Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TP9	26049	2022-12-15	2022-01-25	3.48	3.86	—	3.5	0.013	1.76	6.0	0.09	12.66	0.01	2.518	0.13	0.94	6.9	92.4	0.7	-0.96	0.84	0.84	3.41	3.5	0.004	0.63	0.0	0.04	13.46	0.00	2.021	5.71	0.13	5.8	94.1	0.1	0.17	0.49	0.85	0.87	2.70	23199	2983	18	0	58	0	0	logfile
✔	7SCZ	25043	2022-12-14	2021-09-29	3.5	4.01	3.49	3.8	0.014	1.91	1.0	0.09	27.47	0.03	2.529	0.13	0.00	1.7	98.3	0.0	0.09	0.80	0.77	2.51	3.8	0.005	0.64	0.0	0.04	27.86	0.00	1.978	6.73	0.28	2.3	97.7	0.0	2.83	1.42	0.79	0.80	1.56	23205	850	11	294	0	0	10435	logfile
✔	7LYo	23597	2022-12-15	2021-03-07	3.32	3.53	—	3.5	0.013	1.74	5.0	0.09	12.44	0.01	2.511	0.13	0.43	5.4	94.3	0.3	-0.89	0.78	0.83	3.84	3.5	0.005	0.65	0.0	0.05	14.24	0.00	2.164	6.76	0.35	3.9	96.0	0.1	0.25	0.66	0.81	0.87	3.01	23649	2982	6	0	40	0	0	logfile
✔	7TPF	26053	2022-12-15	2022-01-25	3.4	3.74	—	3.4	0.013	1.75	3.0	0.09	12.67	0.01	2.518	0.13	0.72	6.1	93.5	0.3	-0.86	0.84	0.86	3.82	3.4	0.003	0.60	0.0	0.04	13.29	0.00	2.204	4.45	0.09	4.2	95.7	0.1	0.35	0.45	0.85	0.87	3.19	23199	2983	18	0	58	0	0	logfile
✔	7QK1	14028	2022-12-11	2021-12-17	3.03	3.20	2.13	3.2	0.011	1.97	2.0	0.11	12.98	0.01	2.502	0.14	0.00	5.5	94.5	0.0	-1.61	0.48	0.84	4.10	3.2	0.006	0.81	0.0	0.05	16.34	0.00	2.070	6.83	1.01	4.1	95.9	0.0	-1.96	3.39	0.42	0.84	4.26	3444	450	6	0	0	0	0	logfile
✔	7LWP	23553	2022-12-15	2021-03-01	3.01	3.22	—	3.2	0.013	1.79	8.0	0.09	13.56	0.01	2.498	0.15	1.14	5.6	93.9	0.5	-1.08	0.74	0.81	3.01	3.2	0.004	0.62	0.0	0.04	14.62	0.00	2.142	5.05	0.31	4.3	95.7	0.0	0.36	1.23	0.75	0.84	2.81	23499	2982	6	0	31	0	0	logfile
✔	7LYN	23596	2022-12-15	2021-03-07	3.32	3.52	—	3.5	0.013	1.74	1.0	0.09	12.67	0.01	2.504	0.15	0.86	5.8	94.0	0.3	-0.95	0.77	0.84	3.55	3.5	0.003	0.58	0.0	0.04	14.26	0.00	2.221	5.45	0.20	3.1	96.8	0.1	0.62	0.64	0.81	0.86	2.84	23641	2985	6	0	38	0	0	logfile
✔	7LWU	23557	2022-12-15	2021-03-01	3.22	3.45	—	3.4	0.013	1.76	3.0	0.09	12.68	0.01	2.528	0.15	0.94	5.5	94.3	0.2	-0.75	0.74	0.83	3.14	3.4	0.003	0.58	0.0	0.04	14.07	0.00	2.179	5.01	0.08	3.3	96.7	0.0	0.64	1.24	0.75	0.86	2.87	23576	2980	6	0	35	0	0	logfile
✔	7THE	25893	2022-12-11	2022-01-10	3.87	4.06	3.94	4.0	0.013	1.88	0.0	0.11	13.70	0.02	2.548	0.15	0.00	8.2	91.8	0.0	-2.01	0.67	0.75	3.24	4.0	0.004	0.78	0.0	0.05	15.65	0.00	2.180	17.59	1.39	7.7	92.3	0.0	-1.24	0.72	0.68	0.76	2.45	3305	423	4	0	1	0	0	logfile
✔	7M71	23707	2022-12-11	2021-03-26	2.66	3.67	2.73	3.0	0.013	1.86	5.0	0.11	13.04	0.02	2.531	0.15	0.41	5.0	95.0	0.0	-0.93	0.52	0.79	3.87	3.0	0.003	0.63	0.0	0.04	13.71	0.00	2.162	7.58	0.82	3.4	96.6	0.0	-0.43	1.35	0.59	0.90	3.76	6646	852	6	0	4	0	0	logfile
✔	7LWo	23552	2022-12-15	2021-03-01	2.85	3.02	—	3.0	0.013	1.78	6.0	0.09	12.61	0.01	2.511	0.15	0.59	4.5	95.1	0.3	-0.78	0.72	0.80	3.55	3.0	0.003	0.58	0.0	0.04	15.12	0.00	2.080	4.59	1.85	2.6	97.2	0.1	0.67	0.61	0.68	0.82	3.21	23556	2980	9	0	36	0	0	logfile
✔	7LYM	23595	2022-12-15	2021-03-07	3.57	3.82	—	3.7	0.013	1.73	2.0	0.09	13.00	0.01	2.536	0.15	0.84	5.3	94.4	0.4	-1.08	0.80	0.83	2.78	3.7	0.003	0.60	0.0	0.04	14.36	0.00	2.122	5.78	0.11	3.3	96.7	0.0	0.46	0.66	0.80	0.83	2.11	23916	3006	6	0	33	0	0	logfile
✔	7LWW	23559	2022-12-15	2021-03-01	3.0	3.20	—	3.2	0.013	1.78	5.0	0.10	12.62	0.01	2.511	0.15	0.55	5.3	94.4	0.3	-0.82	0.75	0.84	3.87	3.2	0.004	0.62	0.0	0.04	14.79	0.00	2.170	5.63	1.81	3.3	96.7	0.0	0.50	0.63	0.78	0.85	3.08	23786	2982	18	0	50	0	0	logfile
✔	7N5F	24188	2022-12-11	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.56	0.0	0.04	17.43	0.00	2.324	7.74	0.95	1.3	98.7	0.0	2.60	0.79	0.36	0.78	3.26	3037	386	1	0	1	0	0	logfile
✔	7LWT	23556	2022-12-15	2021-03-01	3.19	3.41	—	3.4	0.013	1.78	1.0	0.10	12.52	0.01	2.527	0.17	0.90	5.1	94.6	0.3	-0.82	0.76	0.84	3.87	3.4	0.002	0.55	0.0	0.04	14.16	0.00	2.191	4.61	0.35	2.9	97.1	0.1	0.72	1.24	0.77	0.83	2.91	23759	2980	15	0	48	0	0	logfile
✔	7NCJ	12268	2022-12-12	2021-01-28	4.23	3.11	3.97	4.5	0.011	1.60	2.0	0.10	13.68	0.01	2.444	0.18	0.76	7.7	92.0	0.3	-2.36	0.65	0.46	—	4.5	0.003	0.61	1.0	0.05	14.19	0.00	1.945	15.31	0.00	10.3	89.7	0.0	-2.78	1.36	0.70	0.58	—	10860	774	12	0	0	0	5586	logfile
✔	7ToV	26039	2022-12-15	2022-01-24	3.16	3.39	—	3.2	0.013	1.79	5.0	0.09	12.54	0.01	2.515	0.18	0.89	5.8	93.7	0.4	-0.81	0.83	0.86	4.13	3.2	0.002	0.58	0.0	0.04	13.29	0.00	2.094	4.43	0.17	3.9	96.0	0.1	0.35	0.51	0.85	0.88	3.38	23199	2983	18	0	58	0	0	logfile
✔	7TP8	26048	2022-12-15	2022-01-25	3.4	3.77	—	3.4	0.013	1.75	6.0	0.09	12.89	0.01	2.519	0.18	0.98	6.3	92.8	0.9	-0.98	0.84	0.85	4.23	3.4	0.003	0.58	0.0	0.04	13.49	0.00	2.230	3.96	0.09	4.4	95.5	0.1	0.26	1.61	0.85	0.87	2.86	23199	2983	18	0	58	0	0	logfile
✔	7KDL	22826	2022-12-14	2020-10-08	2.96	3.49	—	3.4	0.013	1.75	2.0	0.10	12.25	0.01	1.479	0.18	0.27	6.1	93.6	0.3	-0.99	0.78	0.78	3.84	3.4	0.003	0.61	0.0	0.04	14.19	0.00	2.142	6.76	1.42	3.4	96.6	0.0	0.33	1.22	0.79	0.82	3.35	22365	2875	18	0	59	0	0	logfile
✔	7TJZ	25947	2022-12-14	2022-01-17	4.4	7.00	4.54	4.2	0.019	2.21	0.0	0.00	6.67	0.01	2.384	0.19	0.00	4.2	94.2	1.6	-0.41	0.58	0.63	—	4.3	0.012	0.93	0.0	0.00	5.55	0.00	2.081	10.56	0.00	10.4	89.3	0.3	0.17	0.73	0.79	0.83	—	20228	5056	27	0	0	0	0	logfile

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