Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6X79	22083	2021-08-09	2020-05-29	2.9	3.14	3.00	3.1	0.013	1.33	0.0	0.09	10.39	0.01	2.382	0.18	0.26	2.5	97.5	0.0	0.59	0.71	0.74	3.18	3.1	0.005	0.80	0.0	0.05	14.58	0.00	2.186	5.86	2.83	2.5	97.5	0.0	0.16	1.37	0.74	0.81	2.69	22251	2850	15	0	51	0	0	logfile
✔	7KQE	22997	2021-08-10	2020-11-15	2.88	3.80	2.90	3.4	0.012	1.80	8.0	0.10	13.99	0.01	2.478	0.20	1.08	6.3	93.6	0.1	-1.09	0.73	0.37	2.42	2.9	0.004	0.60	0.0	0.04	14.12	0.00	1.984	5.35	0.59	4.6	95.4	0.0	0.04	1.54	0.88	0.85	2.34	68370	4467	9	0	0	0	33744	logfile
✔	6oLK	20115	2021-08-09	2019-04-16	4.0	4.14	—	4.1	0.005	1.05	0.0	0.06	5.09	0.01	2.445	0.20	0.00	2.3	97.7	0.0	-0.75	0.56	0.49	—	4.1	0.005	0.93	0.0	0.05	7.10	0.00	2.031	10.04	0.00	14.1	85.8	0.0	-2.36	1.52	0.64	0.61	—	10323	2094	6	0	0	0	0	logfile
✔	7L7T	23218	2021-08-08	2020-12-30	3.7	4.14	3.63	3.9	0.022	1.65	0.0	0.15	10.10	0.01	2.419	0.20	0.00	1.2	98.8	0.0	0.98	0.85	0.85	2.90	3.9	0.003	0.62	0.0	0.04	13.08	0.00	2.225	7.10	0.13	2.8	97.2	0.0	1.23	0.83	0.85	0.85	2.31	15423	1770	39	0	102	0	0	logfile
✔	7LYM	23595	2021-08-09	2021-03-07	3.57	3.82	—	3.7	0.012	1.71	2.0	0.09	12.55	0.02	2.532	0.21	0.57	5.5	94.3	0.2	-1.16	0.78	0.78	2.67	3.7	0.005	0.65	0.0	0.04	14.03	0.00	2.132	6.46	0.31	4.3	95.7	0.0	0.37	0.68	0.81	0.83	2.36	23912	3005	6	0	33	0	0	logfile
✔	6D3R	7793	2021-08-07	2018-04-16	4.3	4.80	4.40	4.5	0.017	1.75	0.0	0.10	9.07	0.01	2.385	0.21	0.00	1.5	98.5	0.0	0.66	0.66	0.76	—	4.5	0.002	0.64	0.0	0.04	12.21	0.00	2.229	7.21	0.00	2.5	97.5	0.0	2.14	1.43	0.68	0.78	—	7610	1127	1	0	2	0	0	logfile
✘	7LWK	23548	2021-08-09	2021-03-01	2.92	3.11	—	3.1	0.013	1.77	2.0	0.09	12.68	0.01	2.505	0.21	0.27	4.4	95.6	0.1	-0.71	0.73	0.78	3.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23847	3003	6	0	30	0	0	logfile
✔	6G8Z	4362	2021-08-08	2018-04-10	3.66	3.88	3.72	3.8	0.005	0.77	0.0	0.04	8.70	0.00	2.362	0.22	0.00	3.8	96.2	0.0	-0.63	0.66	0.79	4.14	3.8	0.005	0.62	0.0	0.04	13.49	0.00	2.169	5.80	0.23	3.5	96.5	0.0	2.24	1.28	0.72	0.86	2.76	15966	1908	6	0	0	0	0	logfile
✔	6UJB	20795	2021-08-07	2019-10-02	3.51	3.73	—	3.6	0.014	1.45	0.0	0.08	10.89	0.01	1.782	0.22	0.00	2.7	97.3	0.0	0.55	0.77	0.83	3.18	3.6	0.004	0.60	0.0	0.04	14.24	0.00	2.150	6.91	0.21	3.8	96.2	0.0	0.03	1.54	0.79	0.85	3.19	9193	1180	6	0	23	0	0	logfile
✔	6UQK	20849	2021-08-11	2019-10-20	3.77	4.46	4.11	4.3	0.003	0.53	0.0	0.04	9.91	0.00	2.196	0.22	0.00	5.0	95.0	0.0	-1.84	0.74	0.78	1.71	4.3	0.004	0.61	0.0	0.04	12.78	0.00	2.254	4.42	0.53	7.3	92.7	0.0	1.11	0.65	0.75	0.81	2.01	51567	8032	8	0	188	0	0	logfile
✔	7LWT	23556	2021-08-09	2021-03-01	3.19	3.41	—	3.4	0.013	1.77	5.0	0.10	12.28	0.02	2.408	0.23	0.79	4.7	94.8	0.5	-0.76	0.72	0.78	3.87	3.4	0.004	0.61	0.0	0.04	14.12	0.00	2.186	4.48	0.24	3.4	96.6	0.1	0.50	1.25	0.75	0.85	3.29	23760	2980	15	0	48	0	0	logfile
✔	7LJR	23400	2021-08-09	2021-01-30	3.66	3.92	—	3.7	0.013	1.83	9.0	0.10	13.96	0.01	2.509	0.23	1.12	9.2	90.0	0.8	-1.91	0.69	0.65	1.95	3.7	0.010	1.00	0.0	0.04	14.89	0.01	1.552	14.68	0.03	7.1	92.8	0.1	-1.07	1.27	0.78	0.78	1.63	26291	3378	5	0	0	0	0	logfile
✔	7KDJ	22824	2021-08-09	2020-10-08	3.49	4.11	—	3.8	0.012	1.68	1.0	0.09	12.17	0.01	1.477	0.23	0.49	6.4	93.2	0.4	-0.75	0.80	0.79	2.84	3.8	0.003	0.59	0.0	0.04	13.36	0.00	2.193	5.95	0.13	3.5	96.5	0.0	0.67	1.21	0.84	0.85	2.15	22365	2875	18	0	59	0	0	logfile
✔	6WPS	21864	2021-08-10	2020-04-27	3.1	3.36	3.25	3.3	0.013	1.32	0.0	0.09	10.34	0.01	2.364	0.24	0.10	2.4	97.6	0.0	0.67	0.73	0.74	3.01	3.3	0.004	0.63	0.0	0.04	14.53	0.00	2.111	7.53	0.17	3.1	96.9	0.0	0.05	1.67	0.78	0.81	2.82	28116	3540	27	0	75	0	0	logfile
✔	6U7H	20668	2021-08-09	2019-09-02	3.1	3.91	3.18	3.6	0.012	1.77	33.0	0.11	13.25	0.01	2.282	0.24	0.24	4.3	95.7	0.0	-0.94	0.86	0.85	3.84	3.6	0.003	0.57	0.0	0.04	13.44	0.00	2.279	6.37	0.20	3.2	96.8	0.0	0.55	1.25	0.86	0.85	3.05	23394	2895	6	0	81	0	0	logfile
✔	6WJ5	21688	2021-08-10	2020-04-11	3.6	3.81	—	3.8	0.013	1.88	4.0	0.10	13.20	0.01	2.369	0.25	0.05	3.8	95.7	0.5	-2.50	0.51	0.70	3.53	3.8	0.003	0.57	0.0	0.04	16.23	0.00	2.025	6.75	0.15	3.4	96.6	0.0	1.17	1.46	0.61	0.79	2.69	36320	2248	8	0	4	0	18268	logfile
✔	7B9V	12106	2021-08-08	2020-12-14	2.8	2.94	—	2.9	0.010	1.40	6.0	0.10	14.62	0.01	1.604	0.25	0.17	2.5	97.4	0.1	-0.42	0.51	0.65	2.27	2.9	0.004	0.70	0.0	0.04	16.66	0.00	1.928	9.68	1.89	2.5	97.5	0.0	1.40	0.76	0.56	0.70	1.73	109105	12183	58	545	150	0	0	logfile
✔	6VGK	21197	2021-08-08	2020-01-08	3.1	3.32	—	3.4	0.020	1.84	0.0	0.09	9.91	0.01	2.394	0.26	0.00	3.4	95.8	0.8	-0.29	0.54	0.69	4.26	3.4	0.004	0.64	0.0	0.04	13.95	0.00	2.129	8.57	0.15	3.7	96.0	0.3	1.78	1.25	0.66	0.80	3.30	19222	2513	14	0	0	0	0	logfile
✔	5UAR	8461	2021-08-07	2016-12-19	3.73	4.36	—	4.4	0.008	1.18	0.0	0.06	13.30	0.00	2.393	0.26	1.06	7.4	92.5	0.1	-3.58	0.58	0.77	1.39	4.3	0.003	0.76	0.0	0.04	16.43	0.01	2.131	11.46	0.48	4.3	95.7	0.0	0.00	1.58	0.62	0.80	1.08	9489	1184	1	0	2	0	0	logfile
✔	6SKL	10227	2021-08-09	2019-08-16	3.7	3.87	—	3.7	0.013	1.93	50.0	0.11	15.20	0.02	1.901	0.26	0.09	3.3	96.7	0.0	-1.69	0.71	0.72	1.97	3.7	0.002	0.59	0.0	0.04	16.49	0.00	1.960	7.80	0.14	3.2	96.8	0.0	1.08	2.60	0.74	0.78	1.61	118181	7251	24	59	11	0	58997	logfile

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