Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TPF	26053	2022-07-05	2022-01-25	3.4	3.74	—	3.4	0.013	1.75	3.0	0.09	12.67	0.01	2.518	0.13	0.72	6.1	93.5	0.3	-0.86	0.84	0.86	3.82	3.4	0.008	0.91	0.0	0.04	13.36	0.00	2.163	4.61	0.04	4.0	95.9	0.1	0.37	0.44	0.85	0.87	3.19	23199	2983	18	0	58	0	0	logfile
✔	7SCZ	25043	2022-07-05	2021-09-29	3.5	4.01	3.49	3.8	0.014	1.91	1.0	0.09	27.47	0.03	2.529	0.13	0.00	1.7	98.3	0.0	0.09	0.80	0.77	2.51	3.8	0.005	0.64	0.0	0.04	27.86	0.00	1.978	6.73	0.28	2.3	97.7	0.0	2.83	1.42	0.79	0.80	1.56	23205	850	11	294	0	0	10435	logfile
✔	7QK1	14028	2022-07-03	2021-12-17	3.03	3.20	2.13	3.2	0.011	1.97	2.0	0.11	12.98	0.01	2.502	0.14	0.00	5.5	94.5	0.0	-1.61	0.48	0.84	4.10	3.2	0.006	0.81	0.0	0.05	16.34	0.00	2.070	6.83	1.01	4.1	95.9	0.0	-1.96	3.39	0.42	0.84	4.26	3444	450	6	0	0	0	0	logfile
✔	7M71	23707	2022-07-03	2021-03-26	2.66	3.67	2.73	3.0	0.013	1.86	5.0	0.11	13.04	0.02	2.531	0.15	0.41	5.0	95.0	0.0	-0.93	0.52	0.79	3.87	3.0	0.003	0.63	0.0	0.04	13.71	0.00	2.162	7.58	0.82	3.4	96.6	0.0	-0.43	1.35	0.59	0.90	3.76	6646	852	6	0	4	0	0	logfile
✔	7THE	25893	2022-07-03	2022-01-10	3.79	4.06	3.94	4.0	0.013	1.88	0.0	0.11	13.70	0.02	2.548	0.15	0.00	8.2	91.8	0.0	-2.01	0.67	0.75	3.24	4.0	0.004	0.79	0.0	0.05	16.02	0.00	2.183	17.28	0.83	7.0	93.0	0.0	-1.23	0.72	0.68	0.75	2.31	3305	423	4	0	1	0	0	logfile
✔	7N5F	24188	2022-07-02	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.56	0.0	0.04	17.43	0.00	2.324	7.74	0.95	1.3	98.7	0.0	2.60	0.79	0.35	0.77	3.26	3037	386	1	0	1	0	0	logfile
✔	7LWS	23555	2022-07-05	2021-03-01	3.22	3.43	—	3.4	0.013	1.79	3.0	0.09	12.79	0.01	2.500	0.17	0.50	4.4	95.2	0.4	-0.93	0.74	0.78	3.58	3.4	0.008	0.91	0.0	0.04	14.21	0.00	1.791	6.63	0.08	2.7	97.3	0.1	0.33	1.23	0.75	0.84	3.24	23439	3000	3	0	0	0	0	logfile
✔	7KDL	22826	2022-07-05	2020-10-08	2.96	3.49	—	3.4	0.013	1.75	2.0	0.10	12.25	0.01	1.479	0.18	0.27	6.1	93.6	0.3	-0.99	0.78	0.78	3.84	3.4	0.003	0.63	0.0	0.04	14.14	0.00	2.110	6.53	1.20	3.3	96.7	0.0	0.31	1.22	0.79	0.81	3.39	22365	2875	18	0	59	0	0	logfile
✔	7NCJ	12268	2022-07-03	2021-01-28	4.23	3.11	3.97	4.5	0.011	1.60	2.0	0.10	13.68	0.01	2.444	0.18	0.76	7.7	92.0	0.3	-2.36	0.65	0.46	—	4.5	0.003	0.61	1.0	0.05	14.19	0.00	1.945	15.31	0.00	10.3	89.7	0.0	-2.78	1.36	0.70	0.58	—	10860	774	12	0	0	0	5586	logfile
✔	7TP8	26048	2022-07-05	2022-01-25	3.4	3.77	—	3.4	0.013	1.75	6.0	0.09	12.89	0.01	2.519	0.18	0.98	6.3	92.8	0.9	-0.98	0.84	0.85	4.23	3.4	0.003	0.58	0.0	0.04	13.46	0.00	2.221	4.05	0.13	4.5	95.4	0.1	0.27	1.60	0.85	0.86	2.89	23199	2983	18	0	58	0	0	logfile
✔	7ToV	26039	2022-07-05	2022-01-24	3.16	3.39	—	3.2	0.013	1.79	5.0	0.09	12.54	0.01	2.515	0.18	0.89	5.8	93.7	0.4	-0.81	0.83	0.86	4.13	3.2	0.004	0.65	0.0	0.04	13.24	0.01	2.007	4.30	0.13	3.9	96.0	0.1	0.45	0.53	0.84	0.87	3.22	23199	2983	18	0	58	0	0	logfile
✔	7TJZ	25947	2022-07-04	2022-01-17	4.4	7.00	4.54	4.2	0.019	2.21	0.0	0.00	6.67	0.01	2.384	0.19	0.00	4.2	94.2	1.6	-0.41	0.58	0.63	—	4.3	0.012	0.93	0.0	0.00	5.55	0.00	2.081	10.56	0.00	10.4	89.3	0.3	0.17	0.73	0.79	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	6oLK	20115	2022-07-04	2019-04-16	4.0	4.14	—	4.1	0.005	1.04	0.0	0.06	5.09	0.01	2.445	0.20	0.00	2.3	97.7	0.0	-0.75	0.56	0.49	—	4.1	0.003	0.69	0.0	0.04	4.93	0.00	2.195	4.38	0.00	8.3	91.7	0.0	-1.09	1.39	0.63	0.59	—	10323	2094	6	0	0	0	0	logfile
✔	7ToY	26041	2022-07-05	2022-01-24	3.53	3.95	—	3.5	0.013	1.76	4.0	0.10	13.48	0.01	2.517	0.21	1.50	6.8	92.8	0.4	-1.10	0.85	0.84	2.97	3.5	0.004	0.63	0.0	0.04	14.06	0.00	2.150	6.65	0.15	4.3	95.6	0.1	0.25	0.49	0.85	0.85	2.16	24673	3049	20	0	61	0	0	logfile
✔	7KE9	22835	2022-07-05	2020-10-10	3.08	3.62	—	3.5	0.013	1.73	0.0	0.09	12.05	0.01	2.491	0.21	0.04	5.8	94.0	0.2	-0.81	0.80	0.80	4.06	3.5	0.002	0.57	0.0	0.04	13.70	0.00	2.158	5.84	0.31	3.3	96.7	0.0	0.42	1.22	0.79	0.83	3.22	22365	2875	18	0	59	0	0	logfile
✔	7LWV	23558	2022-07-05	2021-03-01	3.12	3.34	—	3.3	0.013	1.76	6.0	0.09	12.69	0.02	1.569	0.21	0.47	5.4	94.3	0.3	-0.82	0.71	0.78	3.99	3.3	0.003	0.59	0.0	0.04	14.45	0.00	2.219	4.51	0.16	3.1	96.9	0.0	0.60	0.62	0.76	0.84	3.18	23564	2980	6	0	34	0	0	logfile
✔	6UQK	20849	2022-07-08	2019-10-20	3.77	4.46	4.11	4.3	0.003	0.53	0.0	0.04	9.91	0.00	2.196	0.22	0.00	5.0	95.0	0.0	-1.84	0.74	0.78	1.71	4.3	0.004	0.60	0.0	0.04	12.65	0.00	2.253	4.30	0.45	7.4	92.6	0.0	1.18	0.61	0.75	0.81	1.89	51567	8032	8	0	188	0	0	logfile
✔	6G8Z	4362	2022-07-04	2018-04-10	3.66	3.88	3.72	3.8	0.005	0.77	0.0	0.04	8.70	0.00	2.362	0.22	0.00	3.8	96.2	0.0	-0.63	0.66	0.79	4.14	3.8	0.002	0.53	0.0	0.04	13.44	0.00	2.214	4.83	0.45	2.8	97.2	0.0	2.54	1.65	0.70	0.85	2.73	15966	1908	6	0	0	0	0	logfile
✔	6ZHX	11220	2022-07-05	2020-06-24	2.5	3.01	2.42	2.8	0.015	2.04	3.0	0.10	27.67	0.03	2.560	0.23	0.00	1.2	98.8	0.0	-0.83	0.80	0.81	5.74	2.7	0.006	0.64	0.0	0.05	28.64	0.00	2.257	2.00	0.95	1.2	98.8	0.0	2.59	1.04	0.86	0.89	4.67	21561	759	12	290	0	0	9607	logfile
✔	7TPH	26055	2022-07-05	2022-01-25	3.58	4.03	—	3.6	0.013	1.75	5.0	0.09	12.22	0.01	2.501	0.23	1.01	7.2	92.3	0.6	-1.01	0.84	0.85	3.36	3.6	0.004	0.58	0.0	0.04	12.78	0.00	2.203	4.90	0.00	5.1	94.8	0.1	0.30	1.93	0.84	0.86	2.46	22180	2912	14	0	52	0	0	logfile

• ← previous
• Page 3 of 392
• next →