Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5UJ9	8559	2021-12-01	2017-01-17	3.49	3.63	3.85	3.6	0.008	1.14	0.0	0.06	12.10	0.00	2.364	0.67	0.00	4.3	95.7	0.0	-2.72	0.50	0.68	2.42	3.6	0.003	0.70	0.0	0.04	15.60	0.00	2.148	10.23	0.69	3.1	96.9	0.0	1.52	0.98	0.59	0.83	1.57	9857	1170	1	0	125	0	0	logfile
✔	7ASA	11891	2021-12-01	2020-10-27	3.5	3.33	—	3.2	0.013	1.98	6.0	0.10	15.71	0.02	2.490	0.68	0.18	3.5	95.8	0.7	-2.30	0.75	0.75	1.26	3.2	0.011	0.91	0.0	0.04	17.52	0.01	2.051	16.94	0.55	5.6	94.3	0.1	-0.25	1.45	0.76	0.76	0.62	8104	750	5	116	0	0	0	logfile
✔	6BHU	7099	2021-12-02	2017-10-31	3.14	3.58	3.62	3.7	0.008	1.22	0.0	0.06	12.26	0.00	1.915	0.69	0.00	3.7	96.3	0.0	-1.76	0.48	0.69	2.60	3.7	0.003	0.59	0.0	0.04	15.33	0.00	1.999	5.37	0.47	2.0	98.0	0.0	1.76	0.74	0.58	0.83	1.52	10273	1208	1	0	127	0	0	logfile
✔	6G79	4358	2021-12-01	2018-04-05	3.78	3.99	—	4.0	0.008	1.15	0.0	0.06	12.12	0.01	2.442	0.69	0.56	4.9	94.6	0.5	-2.95	0.69	0.80	2.34	4.0	0.004	0.68	0.0	0.04	14.44	0.01	2.120	9.96	0.37	2.5	97.3	0.2	0.36	1.28	0.71	0.81	2.45	6053	860	4	0	1	0	0	logfile
✔	7N8i	24237	2021-12-01	2021-06-14	3.0	3.22	3.02	3.2	0.011	1.22	0.0	0.07	10.84	0.01	2.309	0.71	0.26	1.6	98.4	0.0	1.04	0.75	0.87	5.46	3.2	0.008	0.73	0.0	0.05	14.99	0.01	2.088	5.38	1.03	2.8	97.2	0.0	0.99	0.98	0.75	0.91	5.67	3600	445	3	0	5	0	0	logfile
✘	7SoC	25266	2021-12-01	2021-10-29	3.3	3.48	3.25	3.5	0.010	1.21	0.0	0.07	10.55	0.00	2.526	0.74	0.00	1.9	98.1	0.0	0.30	0.70	0.86	4.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3448	433	5	0	7	0	0	logfile
✔	7KKK	22907	2021-12-01	2020-10-27	3.03	3.38	3.82	3.3	0.020	1.73	3.0	0.12	10.39	0.01	2.364	0.75	0.21	1.8	98.2	0.0	0.60	0.63	0.82	3.30	3.3	0.008	0.84	1.0	0.04	14.24	0.00	1.886	6.96	0.35	2.3	97.7	0.0	0.38	1.48	0.62	0.84	3.17	52320	3360	21	0	54	0	25449	logfile
✔	7JZM	22533	2021-12-01	2020-09-02	3.5	3.74	3.50	3.7	0.015	1.37	0.0	0.08	9.25	0.01	2.420	0.76	0.00	2.0	98.0	0.0	0.75	0.75	0.78	4.01	3.7	0.003	0.69	0.0	0.04	13.98	0.00	2.201	6.85	0.00	2.4	97.6	0.0	0.71	1.24	0.75	0.79	2.69	2033	258	3	0	3	0	0	logfile
✔	6GDG	4390	2021-12-01	2018-04-23	4.11	3.92	—	4.0	0.009	1.11	0.0	0.06	12.82	0.00	2.449	0.79	2.07	4.9	94.6	0.5	-3.15	0.76	0.78	—	4.0	0.003	0.70	0.0	0.04	12.55	0.00	2.189	15.22	0.00	3.7	96.3	0.0	-0.21	0.85	0.77	0.76	—	7223	997	6	0	1	0	0	logfile
✔	7JVA	22497	2021-12-01	2020-08-20	3.6	3.93	3.68	3.9	0.016	1.50	0.0	0.09	10.05	0.01	2.398	0.80	0.30	1.0	98.8	0.2	0.87	0.84	0.81	3.50	3.9	0.004	0.72	0.0	0.04	14.67	0.00	2.183	10.23	0.30	3.4	96.6	0.0	-0.06	0.68	0.85	0.82	2.50	3248	420	4	0	3	0	0	logfile
✔	7MSW	23970	2021-12-01	2021-05-12	3.76	3.93	3.60	3.8	0.009	0.66	0.0	0.05	10.62	0.00	1.933	0.81	0.00	2.5	97.3	0.2	-0.01	0.79	0.80	1.87	3.8	0.004	0.60	0.0	0.04	14.05	0.01	2.053	6.58	0.00	4.6	95.4	0.0	-0.05	0.98	0.79	0.81	1.51	9881	635	1	0	3	0	4959	logfile
✔	7MSX	23971	2021-12-01	2021-05-12	3.15	3.24	3.04	3.2	0.008	0.62	0.0	0.05	10.30	0.00	2.385	0.81	0.00	1.9	98.1	0.0	0.06	0.77	0.85	3.76	3.2	0.003	0.49	0.0	0.04	15.13	0.00	2.210	5.29	0.49	2.1	97.9	0.0	1.21	1.12	0.79	0.87	3.16	3706	473	1	0	3	0	0	logfile
✔	7KKL	22910	2021-12-01	2020-10-27	2.85	3.36	2.85	3.2	0.020	1.68	0.0	0.12	10.17	0.01	2.377	0.88	0.41	1.5	98.5	0.0	0.96	0.80	0.84	4.22	3.1	0.003	0.57	0.0	0.04	13.73	0.00	1.884	4.43	0.79	2.1	97.8	0.1	0.57	1.46	0.81	0.87	3.92	52461	3360	27	0	63	0	25437	logfile
✘	6UoX	20834	2021-12-01	2019-10-15	4.02	4.28	—	4.1	0.010	1.17	1.0	0.08	11.80	0.01	2.461	0.89	0.00	8.2	91.8	0.0	-4.01	0.66	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9138	1161	1	0	14	0	0	logfile
✔	7JJJ	22354	2021-12-01	2020-07-26	4.5	4.63	4.47	4.5	0.020	1.77	0.0	0.13	9.94	0.01	2.377	0.90	0.07	2.0	98.0	0.0	0.68	0.79	0.80	—	4.5	0.004	0.71	0.0	0.05	12.24	0.00	2.160	12.85	0.00	5.2	94.8	0.0	-0.44	1.45	0.80	0.83	—	54614	6674	92	0	182	0	0	logfile
✔	5UJA	8560	2021-12-01	2017-01-17	3.34	3.41	3.88	3.4	0.008	1.31	1.0	0.06	13.61	0.00	2.321	0.92	0.00	4.0	96.0	0.0	-3.39	0.49	0.66	2.49	3.3	0.003	0.73	0.0	0.04	16.47	0.00	2.159	12.70	0.49	4.4	95.6	0.0	-0.06	1.05	0.57	0.79	1.74	9900	1170	1	0	126	0	0	logfile
✔	7EZ2	31386	2021-12-01	2021-06-01	3.05	2.80	—	3.0	0.005	0.56	0.0	0.03	13.90	0.00	1.809	0.92	0.00	0.0	0.0	0.0	—	0.69	0.81	—	2.9	0.007	0.84	0.0	0.05	15.80	0.01	1.754	7.27	0.00	0.0	0.0	0.0	—	1.04	0.70	0.82	—	8698	0	3	406	31	0	0	logfile
✔	7RPi	24615	2021-12-01	2021-08-03	2.5	2.74	2.62	2.8	0.016	1.82	2.0	0.11	13.77	0.01	2.170	0.93	0.12	2.0	98.0	0.0	-0.69	0.50	0.73	4.35	2.8	0.003	0.63	0.0	0.04	15.23	0.00	2.235	5.73	0.74	1.6	98.4	0.0	1.66	1.00	0.60	0.82	3.00	8526	926	1	0	35	43	0	logfile
✔	6C5V	7344	2021-12-02	2018-01-16	4.8	4.87	—	4.8	0.013	1.30	0.0	0.07	10.00	0.01	2.307	0.95	0.43	2.4	97.3	0.3	0.06	0.83	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10649	1353	8	0	14	0	0	logfile
✔	6VWK	21419	2021-12-01	2020-02-20	3.3	3.56	—	3.5	0.010	1.30	4.0	0.07	12.71	0.01	2.355	0.98	0.59	0.9	99.1	0.0	-0.35	0.65	0.83	2.71	3.5	0.004	0.70	0.0	0.04	15.34	0.00	2.285	6.61	0.24	2.2	97.8	0.0	3.53	1.22	0.64	0.84	1.42	8423	1133	13	0	0	0	0	logfile

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