Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JFo	22308	2021-08-11	2020-07-17	2.13	2.12	—	2.1	0.022	1.67	2.0	0.11	12.07	0.01	2.198	6.67	1.23	3.9	96.1	0.0	-0.96	0.72	0.77	6.96	2.1	0.006	0.78	0.0	0.05	14.72	0.01	2.183	7.98	1.28	3.0	97.0	0.0	0.80	0.78	0.71	0.76	5.88	38958	4832	40	0	0	1198	0	logfile
✔	7LVQ	23540	2021-08-07	2021-02-26	2.9	2.12	2.86	2.0	0.026	1.30	1.0	0.10	14.92	0.01	1.920	5.31	0.66	6.4	93.5	0.1	-3.20	0.55	0.77	4.09	2.0	0.004	0.71	0.0	0.05	17.26	0.00	1.980	8.27	1.23	3.3	96.7	0.0	0.07	1.06	0.57	0.81	3.20	9767	1226	6	1	5	0	0	logfile
✔	6UVA	20906	2021-08-07	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.07	0.00	2.207	6.60	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.004	0.70	0.0	0.05	18.44	0.00	2.149	9.40	2.88	4.7	95.3	0.0	0.04	1.32	0.66	0.78	3.01	9561	1199	7	0	0	0	0	logfile
✘	6RW4	10021	2021-08-10	2019-06-03	2.97	2.14	2.95	2.8	0.022	0.77	0.0	0.08	13.28	0.01	1.420	2.40	0.06	3.0	97.0	0.1	-2.57	0.85	0.84	4.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	128080	5920	47	955	85	59	59211	logfile
✘	7EDA	31062	2021-08-09	2021-03-15	2.78	2.14	2.78	2.1	0.019	1.95	0.0	0.07	18.23	0.02	1.308	9.41	0.47	3.4	96.6	0.0	-4.11	0.67	0.76	4.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22843	2567	32	0	67	16	0	logfile
✔	7JJP	22358	2021-08-11	2020-07-27	1.94	2.15	2.08	2.1	0.012	1.21	0.0	0.07	14.61	0.01	2.228	2.51	0.56	1.6	98.4	0.0	0.39	0.71	0.85	5.30	2.1	0.004	0.61	0.0	0.04	15.31	0.00	2.076	7.32	0.79	1.8	98.2	0.0	3.42	0.93	0.72	0.87	4.96	40920	2352	36	0	180	396	19104	logfile
✔	7M3N	23658	2021-08-07	2021-03-18	2.4	2.15	2.40	1.9	0.005	0.64	0.0	0.04	15.95	0.00	2.168	5.62	4.28	4.3	95.6	0.1	-2.53	0.43	0.82	4.98	1.9	0.005	0.64	0.0	0.05	17.03	0.01	2.269	6.98	2.75	4.4	95.5	0.1	-0.58	0.48	0.44	0.83	4.83	6004	759	3	0	0	0	0	logfile
✔	6ZKL	11253	2021-08-10	2020-06-30	3.1	2.15	—	2.2	0.007	1.08	0.0	1.04	11.06	0.01	2.242	5.61	0.07	3.9	96.1	0.0	-2.99	0.56	0.74	3.16	2.1	0.011	1.73	1.0	0.31	16.19	0.01	1.917	16.53	0.08	4.6	95.4	0.0	0.01	0.72	0.57	0.76	2.75	67492	8162	71	0	47	0	0	logfile
✔	3JAD	6344	2021-08-08	2015-06-08	3.9	2.16	—	3.8	0.016	1.42	0.0	0.07	8.58	0.01	2.250	16.45	0.43	2.7	97.3	0.0	-2.13	0.68	0.72	0.33	2.7	0.003	0.86	0.0	0.05	12.92	0.00	2.159	16.05	0.17	4.1	95.9	0.0	0.76	1.26	0.70	0.77	0.39	12705	1685	10	0	15	0	0	logfile
✘	6ZZY	11589	2021-08-08	2020-08-05	3.16	2.16	—	2.5	0.025	2.78	0.0	0.13	22.13	0.02	1.092	12.85	0.03	6.1	93.7	0.2	-0.33	0.57	0.76	3.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	54609	4594	44	0	379	0	0	logfile
✔	7LVR	23541	2021-08-07	2021-02-26	2.9	2.16	2.87	2.1	0.016	1.02	0.0	0.07	14.37	0.01	1.937	3.73	0.19	5.2	94.8	0.0	-3.15	0.57	0.78	4.33	2.1	0.003	0.67	0.0	0.04	17.38	0.01	2.005	7.31	1.42	2.8	97.2	0.0	0.00	1.32	0.58	0.83	3.48	9802	1231	6	1	6	0	0	logfile
✔	6X3T	22032	2021-08-08	2020-05-21	2.55	2.18	2.60	2.5	0.004	0.60	0.0	0.04	13.07	0.00	2.171	5.88	2.28	3.0	97.0	0.0	-0.78	0.73	0.82	4.33	2.5	0.004	0.62	0.0	0.04	15.75	0.00	2.145	6.63	3.19	2.6	97.4	0.0	0.93	0.38	0.76	0.83	4.08	17415	2121	18	0	27	0	0	logfile
✔	6LXV	30007	2021-08-08	2020-02-12	2.1	2.18	—	2.2	0.025	1.66	0.0	0.12	16.07	0.01	2.196	1.97	2.81	3.9	95.9	0.1	-1.79	0.78	0.91	6.69	2.2	0.003	0.59	0.0	0.05	16.52	0.00	2.155	4.02	0.79	2.5	97.5	0.0	0.92	0.92	0.78	0.91	6.12	54924	6448	24	0	16	2967	0	logfile
✔	7L1R	23116	2021-08-09	2020-12-15	3.1	2.19	—	2.1	0.011	1.76	28.0	0.11	14.03	0.01	1.965	3.89	3.32	3.3	96.7	0.0	-0.59	0.65	0.71	2.77	2.0	0.006	0.78	0.0	0.05	18.13	0.01	1.828	10.43	1.13	4.4	95.6	0.0	0.00	1.15	0.77	0.79	2.63	24199	3118	13	0	12	0	0	logfile
✔	7JZ6	22530	2021-08-09	2020-09-01	2.53	2.20	—	2.2	0.009	1.04	8.0	0.11	19.13	0.01	1.219	7.68	11.17	7.8	92.2	0.0	-3.03	0.58	0.65	2.78	2.2	0.004	0.77	0.0	0.04	19.19	0.01	2.159	6.07	5.94	3.6	96.4	0.0	0.13	1.59	0.57	0.64	2.45	20842	2646	12	0	4	18	0	logfile
✔	7AQC	11862	2021-08-12	2020-10-21	2.99	2.20	—	2.5	0.004	0.83	0.0	0.05	16.62	0.01	1.862	5.08	0.13	5.4	94.6	0.0	-1.91	0.83	0.80	2.39	2.5	0.006	0.75	0.0	0.04	17.22	0.01	2.027	9.36	2.51	6.4	93.5	0.1	-0.79	0.54	0.88	0.87	2.78	95378	3752	34	3077	0	0	0	logfile
✔	6X19	21993	2021-08-08	2020-05-18	2.1	2.20	2.11	2.1	0.009	1.31	6.0	0.08	14.25	0.01	2.134	12.47	1.01	2.7	97.3	0.1	-1.61	0.73	0.84	4.93	2.2	0.003	0.77	0.0	0.04	16.63	0.00	2.118	6.33	1.74	2.3	97.7	0.0	1.09	1.56	0.72	0.88	4.59	10277	1258	9	0	1	136	0	logfile
✔	3J89	6123	2021-08-07	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	0.00	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.003	0.46	0.0	0.03	20.47	0.00	2.143	7.98	0.75	0.2	99.8	0.0	4.21	2.00	0.81	0.79	0.30	9025	551	19	0	0	0	4598	logfile
✔	6XS6	22301	2021-08-08	2020-07-15	3.7	2.21	—	2.2	0.004	0.83	0.0	0.05	14.26	0.01	2.240	4.49	0.00	6.1	93.9	0.0	-1.99	0.57	0.59	2.30	2.2	0.009	1.06	1.0	0.05	15.92	0.01	2.163	9.97	0.15	5.6	94.4	0.0	-1.05	0.38	0.57	0.59	2.35	18294	2357	3	0	0	0	0	logfile
✔	6W6P	21562	2021-08-11	2020-03-17	2.9	2.21	—	1.7	0.010	1.07	0.0	0.06	16.55	0.01	1.989	6.41	16.52	12.1	87.6	0.3	-4.00	0.77	0.84	2.96	1.7	0.006	0.95	1.0	0.05	16.46	0.01	1.780	6.46	8.58	10.1	89.8	0.1	-2.04	1.59	0.78	0.86	2.77	133554	5058	51	4378	4	0	0	logfile

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