Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6X1A	21994	2022-05-13	2020-05-18	2.5	1.99	2.50	2.6	0.006	0.93	0.0	0.07	15.41	0.00	2.140	14.66	3.79	3.9	96.1	0.0	-3.15	0.51	0.71	2.96	2.6	0.008	0.99	0.0	0.04	16.94	0.01	1.528	10.61	3.60	3.2	96.8	0.0	-0.54	0.99	0.53	0.73	2.65	10140	1262	5	0	1	23	0	logfile
✔	7Z0o	14428	2022-05-13	2022-02-23	2.8	1.99	2.70	1.8	0.004	0.66	0.0	0.04	19.63	0.00	2.189	6.24	1.42	1.7	98.3	0.0	1.08	0.68	0.73	3.27	1.7	0.004	0.60	0.0	0.04	21.28	0.00	2.126	9.04	2.84	2.4	97.6	0.0	1.69	0.49	0.77	0.78	3.19	11864	1256	10	78	0	0	0	logfile
✔	7SiM	25144	2022-05-13	2021-10-14	2.7	2.00	—	1.6	0.005	0.69	0.0	0.05	13.44	0.00	2.302	7.94	0.07	1.7	98.3	0.0	0.36	0.74	0.72	3.19	1.6	0.006	0.87	0.0	0.04	15.91	0.00	2.210	9.55	1.11	1.6	98.4	0.0	0.40	0.93	0.75	0.76	3.19	12826	1564	8	0	28	0	0	logfile
✔	7TZF	26208	2022-05-13	2022-02-15	2.4	2.00	2.39	2.3	0.004	0.52	0.0	0.04	14.53	0.00	2.252	5.13	1.43	1.0	99.0	0.0	-2.36	0.54	0.77	4.70	2.0	0.004	0.63	0.0	0.04	16.84	0.00	2.207	6.55	1.72	1.9	98.1	0.0	0.56	0.84	0.56	0.80	4.91	10342	1272	13	0	19	25	0	logfile
✔	7RYF	24738	2022-05-17	2021-08-25	2.65	2.01	—	2.3	0.006	0.62	0.0	0.07	15.08	0.02	1.764	4.34	0.02	2.5	97.4	0.1	1.04	0.76	0.73	2.78	1.6	0.006	0.85	0.0	0.05	16.12	0.01	1.778	6.93	2.66	3.2	96.7	0.1	0.11	0.35	0.78	0.76	2.66	137516	5497	55	4408	8	0	0	logfile
✘	7S8B	24892	2022-05-14	2021-09-17	2.43	2.01	—	2.3	0.011	1.37	0.0	0.06	16.42	0.01	1.839	7.72	0.56	4.9	95.1	0.0	-4.06	0.72	0.74	3.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21124	2448	8	0	46	0	0	logfile
✔	7P0Z	13153	2022-05-13	2021-07-01	2.43	2.02	2.41	2.2	0.016	0.94	0.0	0.06	14.02	0.01	2.141	7.53	0.00	4.3	95.7	0.0	1.90	0.83	0.86	2.91	2.3	0.004	0.55	0.0	0.03	18.11	0.00	2.143	5.09	2.08	0.9	99.1	0.0	5.03	0.54	0.84	0.88	2.29	12873	1652	7	0	0	0	0	logfile
✔	5A1A	2984	2022-05-16	2015-04-29	2.2	2.04	2.58	2.5	0.009	1.21	0.0	0.04	13.14	0.01	0.020	14.28	1.03	3.9	95.5	0.6	-1.86	0.53	0.76	4.20	2.5	0.005	0.78	0.0	0.05	17.68	0.01	1.924	12.44	3.18	3.0	96.9	0.1	-0.70	0.61	0.54	0.79	3.98	33696	4088	12	0	20	776	0	logfile
✔	5FTK	3296	2022-05-16	2016-01-14	2.4	2.04	—	2.0	0.011	1.39	0.0	0.07	12.31	0.01	2.216	25.10	0.65	6.1	93.5	0.4	-4.37	0.44	0.66	3.22	2.0	0.008	1.12	1.0	0.05	18.03	0.01	2.074	19.63	4.07	8.9	91.0	0.1	-2.22	1.09	0.49	0.68	1.94	34374	4338	18	0	12	96	0	logfile
✔	7QKL	14046	2022-05-12	2021-12-17	2.07	2.04	1.98	2.0	0.011	2.37	0.0	0.25	12.79	0.01	2.537	0.71	0.00	3.6	96.4	0.0	-1.75	0.40	0.83	7.75	2.0	0.005	0.71	0.0	0.05	17.30	0.00	2.476	5.23	0.25	2.7	97.3	0.0	-1.26	2.03	0.45	0.91	8.23	3468	456	6	0	0	0	0	logfile
✔	5FTJ	3295	2022-05-16	2016-01-14	2.3	2.04	—	2.0	0.010	1.30	0.0	0.07	14.89	0.01	1.862	40.83	0.81	5.7	93.3	1.0	-3.32	0.42	0.65	2.67	2.0	0.004	0.84	0.0	0.05	18.68	0.01	2.113	14.60	2.17	6.1	93.7	0.1	-0.87	1.23	0.46	0.66	1.57	34602	4338	18	0	18	120	0	logfile
✔	7P6C	13225	2022-05-12	2021-07-15	2.5	2.04	2.40	2.2	0.005	0.80	0.0	0.06	15.34	0.00	2.284	2.77	0.43	2.8	97.2	0.0	-3.05	0.43	0.86	7.56	2.2	0.005	0.72	0.0	0.05	17.16	0.00	2.203	6.13	0.86	3.5	96.5	0.0	-2.59	0.96	0.45	0.89	7.28	8120	1080	10	0	0	0	0	logfile
✔	7VDA	31912	2022-05-15	2021-09-06	2.26	2.04	2.42	2.1	0.003	0.53	0.0	0.04	17.67	0.00	2.142	8.23	2.20	2.6	97.4	0.0	1.67	0.66	0.82	4.06	2.0	0.003	0.60	0.0	0.04	18.09	0.00	2.073	9.24	3.21	2.5	97.5	0.0	0.92	0.42	0.66	0.83	4.25	23292	2976	6	0	0	0	0	logfile
✔	6YL3	10835	2022-05-22	2020-04-06	1.98	2.04	1.99	2.0	0.067	3.60	246.0	0.36	16.35	0.02	1.877	4.58	2.74	5.3	94.4	0.4	-2.46	0.78	0.83	6.40	2.0	0.005	0.78	0.0	0.05	16.28	0.01	1.724	5.71	1.55	4.1	95.8	0.1	-0.22	0.53	0.81	0.86	7.04	150156	9552	84	0	24	3672	73044	logfile
✔	6XZ7	10655	2022-05-16	2020-02-03	2.1	2.05	2.12	2.1	0.010	0.81	1.0	0.05	14.53	0.03	1.564	6.42	3.26	2.8	96.8	0.4	-2.20	0.41	0.69	5.50	2.1	0.003	0.72	0.0	0.04	14.76	0.01	1.285	6.22	2.29	2.1	97.8	0.1	0.28	0.92	0.70	0.86	5.26	94915	3351	45	3169	179	528	0	logfile
✔	7JSX	22462	2022-05-17	2020-08-16	2.06	2.05	—	2.1	0.022	1.67	2.0	0.11	11.97	0.01	2.201	6.88	1.26	3.9	96.1	0.0	-1.03	0.74	0.76	5.10	2.0	0.012	1.10	0.0	0.04	14.60	0.00	2.135	9.41	0.80	2.4	97.6	0.0	1.01	0.64	0.82	0.89	6.51	38813	4832	40	0	0	1141	0	logfile
✔	7RNN	24580	2022-05-12	2021-07-29	2.86	2.05	—	3.2	0.008	0.80	0.0	0.14	14.23	0.00	1.929	6.74	0.55	3.4	96.6	0.0	-1.11	0.50	0.76	5.00	3.2	0.006	0.69	0.0	0.04	16.16	0.00	2.227	6.08	2.46	2.4	97.6	0.0	0.34	0.96	0.49	0.87	4.21	4000	540	2	0	2	0	0	logfile
✔	6WZG	21972	2022-05-12	2020-05-13	2.3	2.06	2.22	2.3	0.012	1.56	18.0	0.12	13.99	0.01	2.270	5.26	1.65	2.0	98.0	0.0	0.81	0.66	0.71	4.83	2.3	0.003	0.57	0.0	0.04	16.28	0.00	2.162	6.46	1.76	1.8	98.2	0.0	1.69	0.99	0.74	0.86	4.86	8939	1165	6	0	0	0	0	logfile
✔	6YBQ	10771	2022-05-16	2020-03-17	1.96	2.06	—	2.0	0.039	1.58	0.0	0.05	15.05	0.01	1.550	4.72	0.00	2.7	97.3	0.0	-1.94	0.82	0.87	6.46	2.0	0.003	0.72	0.0	0.05	15.91	0.00	2.108	4.76	0.41	2.4	97.6	0.0	0.00	0.46	0.84	0.89	6.08	34092	4289	36	0	12	871	0	logfile
✔	7SQ9	25380	2022-05-14	2021-11-04	2.11	2.06	—	2.1	0.016	1.95	0.0	0.41	17.49	0.00	2.223	5.68	0.00	2.2	97.8	0.0	1.70	0.70	0.88	5.56	2.1	0.003	0.83	0.0	0.04	16.74	0.00	2.104	4.00	1.67	2.8	97.2	0.0	2.07	1.22	0.71	0.89	5.40	15810	1876	16	0	18	16	0	logfile

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