Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7P13	13154	2022-12-13	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	1.6	0.003	0.49	0.0	0.03	17.22	0.00	2.102	14.62	1.08	2.6	97.4	0.0	5.07	0.51	0.83	0.87	3.72	13727	1743	7	0	0	0	154	logfile
✔	7SiL	25143	2022-12-13	2021-10-14	2.7	1.97	—	1.5	0.004	0.68	0.0	0.05	13.57	0.00	2.160	6.73	0.15	2.1	97.9	0.0	0.60	0.75	0.72	3.10	1.6	0.003	0.56	0.0	0.04	16.08	0.00	2.186	8.21	1.92	2.8	97.2	0.0	0.57	0.39	0.77	0.78	2.72	12924	1564	8	0	34	0	0	logfile
✔	7TU5	26126	2022-12-20	2022-02-02	2.1	1.97	2.06	1.8	0.009	0.85	6.0	0.06	15.88	0.01	1.910	4.49	1.54	1.4	98.6	0.0	0.64	0.84	0.82	4.27	1.7	0.004	0.52	0.0	0.04	16.37	0.00	1.944	5.78	1.95	1.3	98.6	0.1	1.74	0.43	0.87	0.87	4.95	19656	2574	18	0	6	6	0	logfile
✔	7P6B	13224	2022-12-11	2021-07-15	2.2	1.98	2.14	2.1	0.004	0.75	0.0	0.09	13.80	0.01	2.246	4.21	0.00	3.8	96.2	0.0	-2.60	0.48	0.85	6.24	2.0	0.006	0.70	0.0	0.05	17.13	0.00	2.107	8.18	0.65	4.7	95.3	0.0	-2.26	0.86	0.49	0.88	6.83	4060	540	5	0	0	0	0	logfile
✔	7PBW	13307	2022-12-12	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.004	0.78	0.0	0.04	14.65	0.01	2.138	7.63	0.15	0.0	100.0	0.0	4.36	0.28	0.77	0.90	7.37	9500	873	54	0	81	230	0	logfile
✔	7Z0o	14428	2022-12-12	2022-02-23	2.8	1.99	2.70	1.8	0.004	0.66	0.0	0.04	19.63	0.00	2.189	6.24	1.42	1.7	98.3	0.0	1.08	0.68	0.73	3.27	1.7	0.004	0.59	0.0	0.04	21.16	0.00	2.152	8.87	3.02	2.1	97.9	0.0	1.78	0.48	0.77	0.79	3.25	11864	1256	10	78	0	0	0	logfile
✔	6X1A	21994	2022-12-12	2020-05-18	2.5	1.99	2.50	2.6	0.006	0.93	0.0	0.07	15.41	0.00	2.140	14.67	3.79	3.9	96.1	0.0	-3.15	0.51	0.71	2.96	2.6	0.003	0.63	0.0	0.04	16.80	0.00	2.199	8.66	3.51	3.0	97.0	0.0	-0.32	1.00	0.53	0.73	2.72	10140	1262	5	0	1	23	0	logfile
✔	7SiM	25144	2022-12-13	2021-10-14	2.7	2.00	—	1.6	0.005	0.69	0.0	0.05	13.44	0.00	2.302	7.90	0.07	1.7	98.3	0.0	0.36	0.74	0.72	3.19	1.6	0.004	0.58	0.0	0.04	15.83	0.00	2.195	9.63	1.11	1.6	98.4	0.0	0.29	0.93	0.75	0.77	3.30	12826	1564	8	0	28	0	0	logfile
✔	7TZF	26208	2022-12-12	2022-02-15	2.4	2.00	2.39	2.3	0.004	0.52	0.0	0.04	14.53	0.00	2.252	5.13	1.43	1.0	99.0	0.0	-2.36	0.54	0.77	4.70	2.0	0.003	0.57	0.0	0.04	16.98	0.00	2.209	6.35	1.91	2.2	97.8	0.0	0.28	0.83	0.57	0.82	4.82	10342	1272	13	0	19	25	0	logfile
✔	7SSS	25413	2022-12-13	2021-11-11	2.4	2.00	2.36	2.4	0.006	0.66	0.0	0.04	14.29	0.02	2.323	3.97	0.00	2.4	97.6	0.0	0.01	0.59	0.78	4.08	2.4	0.005	0.72	0.0	0.04	18.06	0.01	2.116	10.70	2.24	3.7	96.3	0.0	1.89	0.58	0.61	0.79	3.56	12190	1416	24	0	38	170	0	logfile
✘	7S8B	24892	2022-12-18	2021-09-17	2.43	2.01	—	2.3	0.011	1.37	0.0	0.06	16.42	0.01	1.839	7.72	0.56	4.9	95.1	0.0	-4.06	0.72	0.74	3.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21124	2448	8	0	46	0	0	logfile
✔	7RXG	24730	2022-12-12	2021-08-23	2.28	2.01	—	2.3	0.008	1.27	0.0	0.05	17.95	0.00	2.211	14.09	0.18	2.5	97.4	0.2	-0.83	0.61	0.82	4.82	2.3	0.004	0.59	0.0	0.04	16.89	0.00	1.995	15.78	0.54	3.3	96.7	0.0	1.49	0.91	0.66	0.87	5.26	11380	1300	6	0	26	48	96	logfile
✔	7P0Z	13153	2022-12-13	2021-07-01	2.43	2.02	2.41	2.2	0.016	0.94	0.0	0.06	14.02	0.01	2.141	7.53	0.00	4.3	95.7	0.0	1.90	0.83	0.86	2.91	2.3	0.003	0.49	0.0	0.03	18.16	0.00	2.229	4.53	1.64	0.8	99.2	0.0	5.38	0.54	0.84	0.87	2.25	12873	1652	7	0	0	0	0	logfile
✔	7XJG	33226	2022-12-13	2022-04-17	2.51	2.02	2.63	1.6	0.005	0.71	0.0	0.05	22.26	0.01	1.962	7.72	3.44	4.1	95.9	0.0	-0.23	0.76	0.76	2.80	1.6	0.003	0.57	0.0	0.04	21.98	0.00	2.110	7.64	4.90	4.0	96.0	0.0	0.64	0.25	0.79	0.79	2.59	13167	1066	12	216	2	0	0	logfile
✘	7UT6	26756	2022-12-18	2022-04-26	1.91	2.02	1.94	2.0	0.042	0.66	0.0	0.05	16.31	0.01	1.975	5.33	0.93	2.4	97.6	0.0	0.26	0.75	0.87	6.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16442	1998	12	0	8	415	0	logfile
✔	7P5H	13199	2022-12-15	2021-07-14	2.3	2.03	2.33	2.1	0.004	0.62	0.0	0.04	18.38	0.01	1.894	10.02	2.38	3.6	96.4	0.0	0.35	0.64	0.77	4.46	2.2	0.004	0.60	0.0	0.04	18.40	0.00	1.880	9.44	2.61	3.4	96.6	0.0	0.18	0.32	0.66	0.83	4.38	80392	5060	36	0	40	640	39924	logfile
✔	7TJQ	25929	2022-12-16	2022-01-16	3.13	2.03	—	2.0	0.004	0.76	0.0	0.05	13.20	0.01	2.288	1.18	1.03	4.5	95.5	0.0	-0.55	0.75	0.75	3.94	2.0	0.004	0.62	0.0	0.04	15.35	0.00	2.193	8.92	0.27	2.7	97.3	0.0	-0.05	0.94	0.75	0.78	3.10	20538	2679	21	0	12	0	0	logfile
✔	5FTK	3296	2022-12-19	2016-01-14	2.4	2.04	—	2.0	0.011	1.39	0.0	0.07	12.31	0.01	2.216	25.10	0.65	6.1	93.5	0.4	-4.37	0.44	0.66	3.22	2.0	0.004	0.86	0.0	0.05	17.71	0.01	2.108	17.11	3.82	8.6	91.3	0.1	-1.94	1.08	0.49	0.69	1.72	34374	4338	18	0	12	96	0	logfile
✔	5A1A	2984	2022-12-18	2015-04-29	2.2	2.04	2.58	2.5	0.009	1.21	0.0	0.04	13.14	0.01	0.020	14.28	1.03	3.9	95.5	0.6	-1.86	0.53	0.76	4.20	2.5	0.004	0.74	0.0	0.05	17.59	0.00	1.925	12.64	2.89	3.2	96.7	0.1	-0.61	0.61	0.53	0.79	3.95	33696	4088	12	0	20	776	0	logfile
✔	8AG4	15415	2022-12-12	2022-07-19	2.46	2.04	2.48	1.7	0.003	0.49	0.0	0.04	13.59	0.00	2.170	5.34	0.00	3.9	96.1	0.0	0.77	0.82	0.83	4.04	1.7	0.002	0.47	0.0	0.04	15.71	0.00	2.188	6.06	1.03	3.2	96.8	0.0	0.97	0.89	0.81	0.83	3.75	11155	1384	4	0	0	0	0	logfile

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