Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7DRT	30827	2021-12-01	2020-12-29	2.2	2.32	—	2.3	0.011	1.53	9.0	0.09	13.34	0.01	2.064	5.88	2.38	5.4	94.1	0.5	-0.76	0.39	0.58	3.02	2.3	0.003	0.74	0.0	0.04	17.33	0.01	2.233	9.77	4.90	5.1	94.8	0.1	-0.18	1.11	0.64	0.76	2.48	6849	830	7	0	7	10	0	logfile
✘	7FiJ	31599	2021-12-01	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3061	561	1	0	0	0	0	logfile
✔	7RTB	24680	2021-12-01	2021-08-12	2.14	2.32	2.23	2.3	0.003	0.59	0.0	0.04	14.52	0.00	2.277	5.37	0.77	1.6	98.4	0.0	-0.80	0.64	0.69	3.38	2.3	0.003	0.58	0.0	0.04	16.92	0.00	2.262	4.51	2.43	2.3	97.7	0.0	1.24	0.68	0.68	0.82	4.06	8972	1169	7	0	0	1	0	logfile
✔	3KTT	5148	2021-12-01	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	179.94	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	1.9	0.006	1.32	0.0	0.06	17.22	0.01	2.001	37.19	1.22	10.2	88.6	1.2	-2.54	1.70	0.31	0.42	—	3855	513	1	0	0	0	0	logfile
✔	6i5A	4413	2021-12-01	2018-11-13	2.3	2.34	1.50	2.3	0.012	1.84	1.0	0.10	14.16	0.01	2.431	6.70	0.74	1.3	97.4	1.3	-0.89	0.26	0.84	3.95	2.3	0.003	0.54	0.0	0.04	16.64	0.00	2.349	2.93	4.44	2.0	98.0	0.0	2.46	1.23	0.30	0.87	4.22	1206	153	1	0	0	0	0	logfile
✔	6WWP	21943	2021-12-01	2020-05-09	3.1	2.34	3.10	2.2	0.007	0.96	0.0	0.07	15.33	0.01	1.992	6.69	0.67	6.5	93.3	0.2	-4.23	0.58	0.80	3.85	2.2	0.004	0.65	0.0	0.04	17.29	0.00	1.905	7.27	0.58	4.3	95.6	0.1	-0.40	1.10	0.60	0.85	2.99	9645	1213	5	1	3	0	0	logfile
✔	6ZXA	11516	2021-12-01	2020-07-29	2.38	2.34	—	2.3	0.019	3.63	0.0	0.07	20.59	0.01	2.324	10.63	5.21	12.8	87.2	0.0	-1.00	0.75	0.90	5.13	2.3	0.018	2.56	0.0	0.06	20.71	0.01	2.154	13.10	2.53	11.5	88.5	0.0	0.83	0.35	0.75	0.88	4.32	8442	791	28	0	35	0	0	logfile
✔	7KBB	22788	2021-12-01	2020-10-01	4.02	2.37	4.07	2.0	0.006	1.16	0.0	0.06	14.88	0.01	2.073	14.81	1.58	5.4	94.1	0.5	-1.59	0.57	0.58	—	1.7	0.008	1.17	0.0	0.05	14.56	0.01	2.104	15.92	0.00	6.4	93.6	0.0	-0.45	1.23	0.59	0.59	—	6422	812	7	0	0	0	0	logfile
✔	6WWV	21949	2021-12-01	2020-05-09	3.1	2.37	3.04	2.1	0.008	1.00	1.0	0.05	14.78	0.01	1.934	5.67	0.67	6.0	93.5	0.6	-4.33	0.57	0.78	4.01	3.0	0.003	0.65	0.0	0.04	16.98	0.00	1.929	8.51	0.38	4.5	95.3	0.2	-0.50	1.70	0.59	0.83	3.31	9676	1215	6	1	4	0	0	logfile
✘	7CoY	30420	2021-12-01	2020-08-05	2.5	2.41	2.54	2.5	0.017	1.68	5.0	0.10	14.30	0.01	1.106	11.55	0.90	5.6	94.3	0.1	-3.23	0.57	0.80	3.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57966	6096	66	0	279	84	0	logfile
✔	6ZZU	11587	2021-12-02	2020-08-05	3.5	2.41	3.59	3.1	0.005	0.96	0.0	0.05	16.19	0.01	2.125	10.37	0.17	4.9	95.1	0.0	-4.89	0.79	0.78	3.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10760	1340	12	0	4	4	0	logfile
✘	6WTi	21897	2021-12-01	2020-05-02	2.38	2.42	—	2.5	0.010	1.20	5.0	0.07	19.47	0.01	1.179	9.07	11.79	4.6	95.3	0.1	-3.48	0.60	0.74	1.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9980	1207	8	0	14	0	0	logfile
✔	6WWJ	21937	2021-12-01	2020-05-09	3.4	2.45	3.39	3.5	0.009	1.04	1.0	0.05	14.81	0.01	1.997	6.69	0.57	6.6	93.4	0.0	-4.24	0.55	0.79	3.39	3.5	0.004	0.74	0.0	0.05	17.82	0.01	1.894	11.36	0.47	4.4	95.6	0.0	-0.52	0.80	0.58	0.84	2.54	9798	1230	6	1	4	0	0	logfile
✔	6WWF	21933	2021-12-01	2020-05-09	3.3	2.47	3.31	2.3	0.007	1.04	1.0	0.05	14.86	0.01	2.024	4.92	0.47	5.9	94.1	0.0	-3.69	0.55	0.79	3.10	3.5	0.003	0.69	0.0	0.04	17.00	0.00	1.959	9.85	0.28	4.7	95.3	0.0	-0.29	1.19	0.58	0.84	2.41	9804	1231	6	1	4	0	0	logfile
✔	7EXD	31371	2021-12-01	2021-05-27	3.4	2.47	—	2.2	0.002	0.58	0.0	0.15	12.81	0.00	2.114	6.44	0.53	2.1	97.9	0.0	1.95	0.73	0.73	1.79	2.2	0.003	0.66	0.0	0.04	16.20	0.00	2.081	12.41	0.42	2.8	97.2	0.0	0.81	1.21	0.76	0.77	1.99	8749	1118	5	0	1	0	0	logfile
✔	7MKM	23899	2021-12-01	2021-04-24	3.16	2.47	—	2.2	0.003	0.79	0.0	0.05	13.76	0.01	2.304	8.49	0.00	2.2	97.8	0.0	-0.82	0.52	0.59	1.64	2.2	0.004	0.82	0.0	0.05	15.73	0.01	2.190	12.82	0.29	7.5	92.5	0.0	-1.99	0.63	0.53	0.61	1.36	3192	406	3	0	1	0	0	logfile
✔	6GX5	0077	2021-12-01	2018-06-26	3.2	2.51	2.94	3.2	0.017	1.20	0.0	0.11	16.09	0.01	2.596	5.96	4.94	4.3	95.7	0.0	-3.50	0.85	0.88	5.60	3.2	0.005	0.77	0.0	0.05	17.37	0.00	2.112	7.56	0.82	5.4	94.6	0.0	-2.84	0.66	0.83	0.86	4.48	2133	282	3	0	0	0	0	logfile
✔	7KJR	22898	2021-12-01	2020-10-26	2.08	2.52	2.15	2.4	0.007	0.89	0.0	0.05	16.44	0.00	2.254	7.60	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	2.4	0.003	0.52	0.0	0.04	15.79	0.00	2.101	9.36	0.74	2.1	97.9	0.0	1.36	0.39	0.67	0.87	4.69	3840	448	8	0	2	122	0	logfile
✔	7LCi	23274	2021-12-01	2021-01-11	2.9	2.52	2.86	3.0	0.004	0.98	0.0	0.15	14.17	0.00	2.203	10.62	0.00	3.3	96.7	0.0	-0.99	0.50	0.67	2.62	3.0	0.007	0.98	0.0	0.04	17.31	0.01	2.158	11.29	2.61	2.5	97.5	0.0	0.66	1.34	0.53	0.73	1.97	8317	1032	6	0	1	20	0	logfile
✔	6WWi	21936	2021-12-01	2020-05-09	3.6	2.52	3.50	3.8	0.011	1.06	0.0	0.07	15.57	0.01	1.902	6.66	0.47	7.4	92.6	0.1	-4.75	0.51	0.75	2.75	3.6	0.004	0.73	0.0	0.04	17.79	0.00	1.906	10.46	0.19	3.8	96.2	0.0	-0.80	0.89	0.52	0.77	2.24	9753	1229	5	1	3	0	0	logfile

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