Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NSK	0499	2021-12-01	2019-01-24	2.7	2.82	2.55	3.1	0.008	1.11	0.0	0.06	14.47	0.01	2.213	4.78	0.00	3.6	96.4	0.0	-3.23	0.62	0.77	5.14	3.1	0.002	0.56	0.0	0.04	14.80	0.00	2.256	5.65	1.96	2.9	97.1	0.0	2.76	0.42	0.61	0.80	3.31	9096	1092	12	0	18	0	0	logfile
✔	6SKi	10225	2021-12-01	2019-08-15	2.6	2.97	2.57	2.9	0.004	0.72	0.0	0.04	16.20	0.00	2.210	8.64	1.29	1.6	98.4	0.0	-0.80	0.63	0.83	4.83	2.9	0.003	0.55	0.0	0.04	16.67	0.00	2.267	7.50	1.94	3.1	96.9	0.0	0.90	0.51	0.66	0.86	4.48	4434	569	2	0	0	0	0	logfile
✔	6WBV	21599	2021-12-02	2020-03-27	2.5	2.82	2.57	2.7	0.006	0.94	2.0	0.05	15.30	0.01	1.797	7.03	4.26	3.5	96.5	0.0	-0.54	0.67	0.87	4.32	2.8	0.007	1.07	0.0	0.04	16.43	0.01	1.950	6.66	2.66	2.3	97.7	0.0	1.97	0.96	0.54	0.59	3.80	6860	892	7	0	4	11	0	logfile
✔	6TJo	10512	2021-12-01	2019-11-26	3.2	3.43	2.57	3.5	0.013	1.18	0.0	0.07	9.67	0.01	2.394	2.20	0.00	12.7	87.3	0.0	-4.63	0.36	0.76	4.64	3.5	0.006	0.88	0.0	0.05	13.23	0.00	2.284	10.02	0.35	11.1	88.9	0.0	-3.87	1.40	0.36	0.78	3.90	2439	321	3	0	0	0	0	logfile
✔	7N72	24217	2021-12-01	2021-06-09	2.5	3.08	2.57	2.9	0.007	0.87	0.0	0.06	13.12	0.01	1.971	6.06	0.00	1.4	98.6	0.0	-0.87	0.72	0.85	3.04	2.9	0.004	0.61	0.0	0.04	14.47	0.01	1.812	5.79	1.07	2.4	97.6	0.0	1.61	0.42	0.66	0.82	2.83	7705	1030	1	0	11	5	0	logfile
✔	7RPH	24614	2021-12-01	2021-08-03	2.5	2.68	2.59	2.7	0.017	1.89	4.0	0.11	14.66	0.01	1.952	2.03	0.61	2.1	97.9	0.0	-0.70	0.53	0.76	4.93	2.7	0.002	0.61	0.0	0.04	15.96	0.00	2.202	6.54	2.33	1.7	98.3	0.0	1.75	1.30	0.67	0.85	2.95	8573	926	1	0	36	86	0	logfile
✔	7S8o	24899	2021-12-01	2021-09-18	2.58	2.12	2.59	1.9	0.008	0.79	0.0	0.05	13.16	0.00	2.102	3.18	0.00	5.8	94.2	0.0	0.31	0.81	0.80	4.50	1.9	0.008	0.99	0.0	0.04	15.83	0.00	2.222	3.55	1.61	4.2	95.8	0.0	0.97	0.38	0.83	0.83	3.24	8331	1101	6	0	1	0	0	logfile
✔	7P65	13218	2021-12-01	2021-07-15	2.7	2.87	2.60	2.8	0.004	0.63	0.0	0.05	12.60	0.00	2.381	2.01	0.00	2.8	97.2	0.0	-2.90	0.55	0.86	5.81	2.8	0.007	0.70	0.0	0.05	15.71	0.00	2.309	5.56	1.26	3.3	96.7	0.0	-2.84	0.47	0.48	0.88	5.48	4145	550	5	0	0	0	0	logfile
✔	7EGK	31135	2021-12-01	2021-03-24	2.7	2.79	2.60	2.7	0.008	0.97	0.0	0.05	14.76	0.01	2.240	2.92	8.02	3.2	96.5	0.2	-5.67	0.74	0.87	3.24	2.7	0.002	0.65	0.0	0.04	16.72	0.00	2.238	6.15	1.64	2.6	97.4	0.0	1.06	1.21	0.73	0.88	2.12	9894	1317	12	0	6	0	0	logfile
✔	7RPi	24615	2021-12-01	2021-08-03	2.5	2.74	2.62	2.8	0.016	1.82	2.0	0.11	13.77	0.01	2.170	0.93	0.12	2.0	98.0	0.0	-0.69	0.50	0.73	4.35	2.8	0.003	0.63	0.0	0.04	15.23	0.00	2.235	5.73	0.74	1.6	98.4	0.0	1.66	1.00	0.60	0.82	3.00	8526	926	1	0	35	43	0	logfile
✔	7S8P	24900	2021-12-01	2021-09-18	2.6	2.11	2.62	1.8	0.024	0.85	0.0	0.18	12.77	0.00	2.183	3.18	0.00	5.8	94.2	0.0	-2.01	0.73	0.75	4.73	1.9	0.004	0.80	0.0	0.12	14.88	0.01	2.152	4.45	1.24	4.6	95.4	0.0	-0.76	0.29	0.83	0.83	4.19	8093	1089	5	0	1	0	0	logfile
✔	7LY0	23581	2021-12-01	2021-03-05	2.6	2.57	2.63	2.7	0.012	1.17	0.0	0.08	9.71	0.01	2.515	0.55	0.36	1.2	98.8	0.0	1.70	0.61	0.70	5.23	2.7	0.009	0.82	0.0	0.04	15.47	0.01	2.156	8.66	2.50	2.1	97.9	0.0	0.63	1.63	0.70	0.76	4.04	2805	354	5	0	6	0	0	logfile
✔	6W6M	21559	2021-12-01	2020-03-17	2.7	2.83	2.64	2.8	0.008	1.02	14.0	0.06	12.30	0.01	1.953	13.25	2.97	7.8	92.2	0.0	-3.02	0.62	0.72	2.71	2.8	0.004	0.78	0.0	0.05	14.60	0.01	2.143	6.54	3.05	6.3	93.7	0.0	-1.25	1.69	0.73	0.82	2.55	43638	5768	14	0	0	0	0	logfile
✔	6Z1o	11031	2021-12-01	2020-05-14	3.2	3.40	2.66	3.4	0.013	2.23	0.0	0.13	13.75	0.01	2.354	5.42	0.00	8.2	91.8	0.0	-4.26	0.60	0.76	2.88	3.4	0.003	0.65	0.0	0.04	17.18	0.00	2.063	8.51	1.17	6.3	93.7	0.0	-3.48	2.03	0.64	0.81	2.62	7758	534	6	0	0	0	3786	logfile
✔	6NSJ	0498	2021-12-01	2019-01-24	2.7	3.69	2.67	3.6	0.007	1.12	0.0	0.06	13.78	0.01	2.340	8.25	2.18	6.0	94.0	0.0	-4.40	0.61	0.75	5.00	3.6	0.004	0.63	0.0	0.04	14.27	0.00	2.223	5.32	1.74	4.1	95.9	0.0	1.71	0.52	0.56	0.72	3.08	9096	1092	12	0	18	0	0	logfile
✔	6WWS	21946	2021-12-01	2020-05-09	2.7	2.11	2.68	2.0	0.009	1.25	8.0	0.07	15.99	0.02	2.077	8.07	3.06	6.5	93.1	0.3	-3.99	0.59	0.78	4.41	2.0	0.004	0.62	0.0	0.04	17.48	0.00	1.967	5.61	2.01	3.7	96.3	0.0	-0.53	1.03	0.60	0.84	4.12	9696	1216	6	1	4	0	0	logfile
✔	6K7N	9942	2021-12-02	2019-06-07	2.84	2.94	2.68	2.9	0.013	1.26	0.0	0.07	15.45	0.01	2.046	6.84	0.44	8.0	91.9	0.1	-3.74	0.61	0.85	3.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10544	1308	4	0	8	0	0	logfile
✔	6WWR	21945	2021-12-01	2020-05-09	2.7	2.08	2.69	1.9	0.009	0.96	1.0	0.06	14.63	0.01	1.967	5.29	0.57	5.8	94.2	0.0	-3.62	0.60	0.77	5.00	2.0	0.004	0.67	0.0	0.04	16.99	0.00	1.916	6.86	1.72	3.9	96.1	0.0	-0.28	1.08	0.62	0.84	3.85	9719	1220	6	1	4	0	0	logfile
✔	7P66	13219	2021-12-01	2021-07-15	3.0	3.09	2.70	3.2	0.004	0.66	0.0	0.06	12.13	0.00	2.388	4.21	0.00	3.8	96.2	0.0	-2.50	0.48	0.82	4.06	3.2	0.005	0.62	0.0	0.05	15.20	0.00	2.173	6.37	1.72	5.5	94.5	0.0	-2.92	1.34	0.48	0.85	4.29	4060	540	5	0	0	0	0	logfile
✔	6LN7	0926	2021-12-01	2019-12-28	2.8	2.90	2.71	2.9	0.006	0.62	0.0	0.04	11.52	0.00	2.101	5.64	0.00	2.3	97.7	0.0	-3.93	0.70	0.85	3.69	2.9	0.008	0.98	0.0	0.04	16.55	0.00	2.104	7.22	1.39	2.4	97.6	0.0	0.35	0.44	0.72	0.87	3.03	7840	1011	1	0	4	0	0	logfile

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