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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7QJW | 14024 | 2023-11-14 | 2021-12-17 | 2.81 | 2.81 | 1.88 | 2.9 | 0.012 | 2.09 | 0.0 | 0.10 | 11.96 | 0.01 | 2.556 | 0.00 | 0.00 | 2.3 | 96.3 | 1.4 | -1.19 | 0.34 | 0.72 | 5.41 | 2.8 | 0.003 | 0.63 | 0.0 | 0.05 | 15.65 | 0.00 | 2.366 | 4.13 | 1.01 | 2.7 | 97.3 | 0.0 | -1.58 | 1.60 | 0.38 | 0.78 | 4.37 | 7032 | 450 | 6 | 0 | 0 | 0 | 3588 | logfile |
✔ | 8oRM | 17129 | 2023-11-13 | 2023-04-14 | 1.9 | 1.83 | 1.88 | 1.9 | 0.004 | 0.58 | 0.0 | 0.04 | 16.77 | 0.00 | 2.236 | 3.99 | 0.90 | 1.6 | 98.2 | 0.2 | 1.88 | 0.70 | 0.81 | 5.96 | 1.9 | 0.005 | 0.69 | 0.0 | 0.05 | 16.78 | 0.01 | 2.187 | 6.14 | 1.08 | 1.5 | 98.4 | 0.2 | 1.36 | 0.18 | 0.70 | 0.83 | 5.92 | 5341 | 632 | 7 | 0 | 2 | 210 | 0 | logfile |
✔ | 7QEQ | 13937 | 2023-11-17 | 2021-12-03 | 1.9 | 2.38 | 1.89 | 2.1 | 0.005 | 0.87 | 0.0 | 0.04 | 12.39 | 0.00 | 2.181 | 2.19 | 1.18 | 1.1 | 98.9 | 0.0 | 1.60 | 0.82 | 0.90 | 4.56 | 2.1 | 0.003 | 0.58 | 0.0 | 0.04 | 14.10 | 0.00 | 2.251 | 2.71 | 1.18 | 1.8 | 98.2 | 0.0 | 3.93 | 0.99 | 0.82 | 0.92 | 4.12 | 19313 | 2268 | 36 | 0 | 60 | 305 | 0 | logfile |
✘ | 8BQV | 16188 | 2023-11-14 | 2023-01-18 | 2.0 | 1.96 | 1.89 | 1.9 | 0.008 | 1.01 | 0.0 | 0.07 | 8.75 | 0.00 | 0.000 | 15.01 | 0.00 | 6.8 | 93.2 | 0.0 | -2.59 | 0.54 | 0.77 | 8.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8595 | 1155 | 45 | 0 | 105 | 120 | 0 | logfile |
✔ | 8CPS | 16784 | 2023-11-21 | 2023-03-03 | 1.82 | 1.69 | 1.90 | 1.7 | 0.003 | 0.66 | 0.0 | 0.05 | 15.42 | 0.01 | 2.116 | 2.82 | 0.00 | 1.0 | 99.0 | 0.0 | 2.28 | 0.75 | 0.81 | 8.54 | 1.7 | 0.003 | 0.58 | 0.0 | 0.04 | 17.00 | 0.00 | 2.154 | 4.46 | 0.16 | 1.2 | 98.8 | 0.0 | 4.78 | 0.30 | 0.77 | 0.83 | 8.39 | 36034 | 4152 | 72 | 0 | 38 | 1916 | 0 | logfile |
✔ | 8Q8C | 18250 | 2023-11-14 | 2023-08-18 | 1.92 | 1.98 | 1.90 | 2.0 | 0.011 | 1.66 | 0.0 | 0.08 | 10.69 | 0.01 | 2.505 | 0.00 | 0.27 | 1.2 | 98.8 | 0.0 | -1.44 | 0.21 | 0.65 | 7.52 | 1.9 | 0.003 | 0.56 | 0.0 | 0.05 | 16.18 | 0.00 | 2.145 | 1.81 | 0.27 | 1.4 | 98.6 | 0.0 | -1.06 | 1.98 | 0.39 | 0.90 | 7.60 | 6618 | 429 | 6 | 0 | 0 | 0 | 3372 | logfile |
✔ | 7QKY | 14057 | 2023-11-13 | 2021-12-19 | 1.86 | 2.10 | 1.91 | 2.0 | 0.011 | 1.75 | 3.0 | 0.09 | 12.76 | 0.01 | 2.522 | 1.04 | 0.61 | 4.7 | 95.3 | 0.0 | -3.08 | 0.33 | 0.75 | 8.32 | 2.0 | 0.004 | 0.74 | 0.0 | 0.05 | 16.56 | 0.00 | 2.028 | 5.37 | 0.61 | 6.2 | 93.8 | 0.0 | -3.22 | 1.00 | 0.39 | 0.84 | 7.47 | 5760 | 396 | 6 | 0 | 0 | 0 | 2862 | logfile |
✘ | 8CU8 | 26996 | 2023-11-21 | 2022-05-16 | 1.91 | 2.52 | 1.91 | 2.2 | 0.005 | 0.65 | 0.0 | 0.05 | 13.91 | 0.01 | 2.043 | 0.74 | 0.00 | 0.6 | 99.4 | 0.0 | 1.28 | 0.87 | 0.93 | 5.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35271 | 4032 | 72 | 0 | 24 | 2271 | 0 | logfile |
✔ | 8F0K | 28759 | 2023-11-15 | 2022-11-03 | 1.9 | 1.70 | 1.92 | 1.9 | 0.010 | 0.59 | 0.0 | 0.04 | 14.21 | 0.01 | 2.252 | 4.34 | 0.91 | 1.2 | 98.8 | 0.0 | -1.70 | 0.50 | 0.67 | 4.75 | 1.9 | 0.004 | 0.68 | 0.0 | 0.04 | 16.58 | 0.00 | 2.187 | 6.72 | 1.09 | 2.1 | 97.9 | 0.0 | 1.33 | 0.64 | 0.58 | 0.73 | 4.97 | 10553 | 1272 | 12 | 0 | 18 | 39 | 0 | logfile |
✔ | 8AB6 | 15312 | 2023-11-21 | 2022-07-04 | 2.0 | 1.80 | 1.92 | 1.9 | 0.010 | 1.60 | 28.0 | 0.11 | 16.94 | 0.01 | 2.091 | 3.07 | 1.89 | 2.3 | 97.7 | 0.0 | -0.82 | 0.68 | 0.86 | 6.61 | 1.9 | 0.003 | 0.59 | 0.0 | 0.04 | 16.51 | 0.00 | 2.033 | 3.75 | 0.65 | 1.6 | 98.4 | 0.0 | 2.05 | 0.98 | 0.72 | 0.87 | 6.11 | 32914 | 3878 | 53 | 0 | 30 | 1326 | 0 | logfile |
✔ | 8Q27 | 18070 | 2023-11-14 | 2023-08-01 | 2.02 | 1.98 | 1.92 | 2.0 | 0.011 | 1.74 | 0.0 | 0.08 | 11.92 | 0.01 | 2.517 | 0.00 | 1.27 | 2.3 | 97.7 | 0.0 | -1.63 | 0.21 | 0.69 | 8.02 | 2.0 | 0.002 | 0.54 | 0.0 | 0.05 | 17.00 | 0.00 | 2.208 | 1.57 | 0.51 | 2.5 | 97.5 | 0.0 | -1.37 | 1.20 | 0.34 | 0.88 | 7.21 | 7002 | 453 | 6 | 0 | 0 | 0 | 3567 | logfile |
✔ | 8CA7 | 16520 | 2023-11-17 | 2023-01-24 | 2.06 | 1.61 | 1.93 | 1.9 | 0.012 | 1.53 | 0.0 | 0.14 | 14.84 | 0.03 | 1.726 | 0.60 | 0.71 | 3.0 | 96.8 | 0.1 | -1.46 | 0.62 | 0.75 | 4.98 | 1.9 | 0.004 | 0.78 | 0.0 | 0.05 | 15.37 | 0.01 | 1.755 | 8.56 | 1.56 | 2.2 | 97.7 | 0.1 | 1.22 | 0.46 | 0.68 | 0.78 | 4.87 | 18093 | 848 | 19 | 502 | 42 | 543 | 0 | logfile |
✔ | 7MBX | 23749 | 2023-11-14 | 2021-04-01 | 1.95 | 2.56 | 1.94 | 2.4 | 0.012 | 0.88 | 1.0 | 0.06 | 11.68 | 0.01 | 2.287 | 2.16 | 0.45 | 1.5 | 98.5 | 0.0 | -0.11 | 0.72 | 0.86 | 4.55 | 2.3 | 0.002 | 0.58 | 0.0 | 0.04 | 15.24 | 0.00 | 2.221 | 6.49 | 0.78 | 1.1 | 98.9 | 0.0 | 1.97 | 0.54 | 0.71 | 0.87 | 4.45 | 8433 | 1065 | 11 | 0 | 2 | 61 | 0 | logfile |
✔ | 8iRR | 35683 | 2023-11-16 | 2023-03-19 | 3.2 | 3.00 | 1.94 | 3.1 | 0.013 | 1.82 | 3.0 | 0.09 | 12.68 | 0.02 | 2.395 | 1.16 | 0.00 | 3.9 | 96.1 | 0.0 | -0.37 | 0.53 | 0.79 | 4.38 | 3.0 | 0.003 | 0.53 | 0.0 | 0.04 | 14.98 | 0.00 | 2.118 | 6.51 | 0.45 | 2.7 | 97.3 | 0.0 | 0.63 | 0.77 | 0.53 | 0.82 | 3.37 | 16329 | 1032 | 5 | 0 | 4 | 2 | 8080 | logfile |
✔ | 8F0J | 28758 | 2023-11-14 | 2022-11-03 | 2.0 | 1.77 | 1.94 | 1.9 | 0.011 | 0.61 | 1.0 | 0.05 | 14.78 | 0.00 | 2.246 | 4.03 | 0.40 | 1.1 | 98.9 | 0.0 | -1.49 | 0.53 | 0.75 | 5.18 | 1.9 | 0.003 | 0.58 | 0.0 | 0.04 | 16.66 | 0.00 | 2.212 | 5.89 | 1.01 | 2.1 | 97.9 | 0.0 | 1.58 | 0.82 | 0.54 | 0.77 | 5.38 | 9678 | 1157 | 11 | 0 | 18 | 25 | 0 | logfile |
✔ | 8PPo | 17806 | 2023-11-13 | 2023-07-07 | 2.0 | 2.30 | 1.95 | 2.2 | 0.008 | 1.20 | 1.0 | 0.07 | 13.41 | 0.01 | 2.625 | 0.29 | 0.00 | 6.7 | 93.3 | 0.0 | 0.71 | 0.58 | 0.84 | 6.50 | 2.2 | 0.004 | 0.53 | 0.0 | 0.06 | 13.89 | 0.00 | 2.300 | 0.00 | 1.04 | 0.0 | 100.0 | 0.0 | 1.18 | 0.38 | 0.50 | 0.88 | 5.61 | 1696 | 240 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 8P6Y | 17511 | 2023-11-13 | 2023-05-30 | 1.9 | 1.73 | 1.95 | 1.9 | 0.005 | 0.60 | 0.0 | 0.04 | 16.82 | 0.00 | 2.148 | 3.62 | 0.36 | 1.0 | 98.9 | 0.2 | 1.99 | 0.68 | 0.84 | 6.33 | 1.9 | 0.004 | 0.63 | 0.0 | 0.04 | 16.85 | 0.00 | 2.148 | 4.60 | 0.90 | 1.3 | 98.5 | 0.2 | 1.74 | 0.21 | 0.68 | 0.85 | 6.33 | 5266 | 630 | 7 | 0 | 3 | 158 | 0 | logfile |
✔ | 6QJM | 4564 | 2023-11-13 | 2019-01-24 | 3.3 | 3.49 | 1.95 | 3.4 | 0.010 | 1.01 | 0.0 | 0.07 | 8.06 | 0.01 | 2.408 | 6.17 | 0.00 | 9.1 | 90.9 | 0.0 | -2.36 | 0.38 | 0.76 | 3.31 | 3.5 | 0.003 | 0.57 | 0.0 | 0.05 | 13.66 | 0.00 | 2.146 | 4.49 | 0.00 | 5.1 | 94.9 | 0.0 | -2.42 | 1.59 | 0.33 | 0.73 | 2.58 | 846 | 111 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D8R | 27255 | 2023-11-13 | 2022-06-08 | 4.1 | 4.18 | 1.95 | 4.1 | 0.011 | 1.25 | 0.0 | 0.06 | 11.00 | 0.01 | 2.512 | 1.08 | 0.00 | 2.1 | 97.9 | 0.0 | 1.96 | 0.59 | 0.61 | — | 4.1 | 0.003 | 0.75 | 0.0 | 0.05 | 12.45 | 0.01 | 2.191 | 14.44 | 0.00 | 6.7 | 93.3 | 0.0 | -0.58 | 1.90 | 0.62 | 0.66 | — | 3323 | 425 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 6ZRF | 11380 | 2023-11-13 | 2020-07-13 | 3.6 | 3.66 | 1.96 | 3.6 | 0.014 | 1.28 | 0.0 | 0.05 | 15.23 | 0.00 | 1.993 | 42.14 | 0.00 | 4.9 | 95.1 | 0.0 | -6.22 | 0.67 | 0.79 | 1.84 | 3.7 | 0.005 | 0.78 | 0.0 | 0.05 | 15.71 | 0.00 | 2.253 | 22.30 | 0.42 | 13.3 | 86.7 | 0.0 | -5.85 | 0.52 | 0.70 | 0.82 | 3.46 | 2220 | 300 | 12 | 0 | 0 | 0 | 0 | logfile |