Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XYo	10650	2021-08-07	2020-01-30	2.6	2.79	2.31	2.7	0.008	0.74	0.0	0.06	12.93	0.00	2.300	5.78	0.93	2.6	97.4	0.0	-2.90	0.46	0.89	5.98	2.7	0.005	0.57	0.0	0.05	18.09	0.00	2.185	4.80	2.22	3.1	96.9	0.0	-1.78	0.97	0.49	0.90	4.64	5490	800	10	0	0	0	0	logfile
✔	6UVA	20906	2021-08-07	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.07	0.00	2.207	6.60	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.004	0.70	0.0	0.05	18.44	0.00	2.149	9.40	2.88	4.7	95.3	0.0	0.04	1.32	0.66	0.78	3.01	9561	1199	7	0	0	0	0	logfile
✔	7BGL	12183	2021-08-10	2021-01-07	2.2	2.57	2.32	2.5	0.007	0.65	0.0	0.08	19.44	0.00	1.980	29.57	2.50	7.3	92.7	0.0	0.56	0.73	0.86	3.07	2.5	0.004	0.64	0.0	0.05	16.86	0.00	2.150	8.50	3.42	7.8	92.2	0.0	-0.20	0.45	0.75	0.89	3.16	120484	15626	104	0	52	0	0	logfile
✔	6QJP	4565	2021-08-07	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.003	0.72	0.0	0.05	12.84	0.00	2.423	11.00	0.00	1.1	98.9	0.0	-3.26	1.60	0.33	0.73	4.12	816	105	3	0	0	0	0	logfile
✔	6PXM	20521	2021-08-10	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.61	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	2.3	0.002	0.43	0.0	0.03	17.65	0.00	2.202	3.26	0.09	1.8	98.2	0.0	5.35	1.49	0.78	0.89	3.87	32736	4080	24	0	0	0	0	logfile
✔	6SDZ	10150	2021-08-07	2019-07-29	2.97	3.77	2.35	3.5	0.009	1.13	0.0	0.08	12.17	0.01	2.263	27.27	0.12	5.5	94.5	0.0	-3.05	0.89	0.88	3.72	3.5	0.005	1.14	0.0	0.05	15.70	0.01	2.255	25.12	1.75	6.5	93.5	0.0	-2.97	1.95	0.86	0.87	3.65	7909	1012	11	0	0	0	0	logfile
✔	7DD9	30650	2021-08-11	2020-10-28	2.4	2.49	2.37	2.4	0.007	0.71	0.0	0.05	15.88	0.00	1.932	8.58	1.93	7.1	92.9	0.0	-1.19	0.79	0.87	4.70	2.4	0.006	0.71	0.0	0.05	16.32	0.00	1.925	9.29	2.48	6.8	93.2	0.0	-1.16	0.22	0.80	0.88	4.73	37149	4516	12	0	12	949	0	logfile
✔	7N8H	24236	2021-08-10	2021-06-14	2.3	2.39	2.37	2.4	0.012	1.25	0.0	0.08	11.01	0.01	2.409	1.59	0.00	1.7	98.3	0.0	0.64	0.73	0.78	4.69	2.4	0.006	0.78	0.0	0.05	14.39	0.01	1.901	4.82	1.40	2.8	97.2	0.0	0.65	0.99	0.76	0.85	4.83	32921	4356	36	0	60	771	0	logfile
✔	6XLU	22251	2021-08-09	2020-06-29	2.4	2.54	2.37	2.5	0.009	1.09	0.0	0.08	14.26	0.01	2.240	1.89	0.36	6.0	93.8	0.1	-2.50	0.71	0.83	4.42	2.5	0.002	0.56	0.0	0.04	15.32	0.00	2.143	3.72	0.61	3.0	97.0	0.0	-0.01	0.94	0.71	0.85	3.52	25990	3178	24	0	62	250	0	logfile
✔	7BoJ	30130	2021-08-10	2020-03-19	2.5	2.54	2.38	2.5	0.007	0.92	0.0	0.06	12.86	0.01	2.271	3.34	0.00	2.4	97.6	0.0	-2.48	0.76	0.86	4.26	2.5	0.003	0.58	0.0	0.04	15.67	0.00	2.190	6.84	2.27	1.7	98.3	0.0	1.46	0.48	0.77	0.87	3.88	123525	16165	61	0	0	0	0	logfile
✔	6RWK	10040	2021-08-09	2019-06-05	3.86	3.95	2.39	3.9	0.007	0.76	0.0	0.05	13.64	0.00	2.183	14.27	5.83	12.2	87.8	0.0	-3.93	0.53	0.86	3.51	3.9	0.004	0.89	0.0	0.05	16.70	0.01	2.121	15.73	0.67	9.2	90.7	0.1	-1.04	0.87	0.53	0.86	3.31	21760	2688	32	0	0	0	0	logfile
✔	7M3N	23658	2021-08-07	2021-03-18	2.4	2.15	2.40	1.9	0.005	0.64	0.0	0.04	15.95	0.00	2.168	5.62	4.28	4.3	95.6	0.1	-2.53	0.43	0.82	4.98	1.9	0.005	0.64	0.0	0.05	17.03	0.01	2.269	6.98	2.75	4.4	95.5	0.1	-0.58	0.48	0.44	0.83	4.83	6004	759	3	0	0	0	0	logfile
✔	7Ki0	22882	2021-08-07	2020-10-22	2.5	2.66	2.41	2.6	0.007	0.86	0.0	0.06	13.88	0.00	2.218	7.51	0.10	3.0	97.0	0.0	-0.60	0.66	0.85	4.49	2.6	0.004	0.57	0.0	0.04	16.16	0.00	2.167	4.03	0.71	2.2	97.8	0.0	1.34	1.76	0.70	0.89	4.18	9242	1143	12	0	1	79	0	logfile
✔	6ZHX	11220	2021-08-09	2020-06-24	2.5	3.01	2.42	2.8	0.015	2.04	3.0	0.10	27.67	0.03	2.560	0.14	0.00	1.2	98.8	0.0	-0.83	0.80	0.81	5.74	2.7	0.006	0.62	0.0	0.04	28.61	0.00	2.157	1.81	0.48	1.2	98.8	0.0	2.73	1.06	0.87	0.89	4.62	21561	759	12	290	0	0	9607	logfile
✔	6Fo0	4286	2021-08-09	2018-02-05	4.1	4.16	2.43	4.1	0.012	0.96	0.0	0.05	8.86	0.01	2.040	5.51	0.00	10.2	89.8	0.1	-4.55	0.72	0.79	—	4.1	0.003	0.61	0.0	0.04	12.65	0.00	1.881	10.71	0.00	5.9	94.1	0.0	-1.06	2.44	0.74	0.81	—	61356	3910	24	0	8	0	30362	logfile
✔	6QFA	4542	2021-08-08	2019-01-09	2.49	2.59	2.43	2.6	0.005	0.75	0.0	0.06	10.73	0.01	1.973	5.30	0.00	1.8	98.2	0.0	-2.14	0.73	0.85	4.50	2.6	0.003	0.59	0.0	0.04	14.34	0.00	2.206	6.24	1.37	1.0	99.0	0.0	1.22	1.19	0.75	0.87	3.95	18755	2270	20	0	35	0	0	logfile
✔	6SZU	10354	2021-08-08	2019-10-02	2.41	2.49	2.44	2.5	0.008	0.82	0.0	0.05	15.43	0.01	2.013	3.01	5.28	4.2	95.7	0.1	-2.10	0.71	0.88	5.00	2.5	0.002	0.53	0.0	0.04	17.00	0.00	1.942	6.36	1.72	2.0	98.0	0.0	0.80	0.51	0.72	0.89	4.31	15245	1699	14	54	8	311	0	logfile
✔	6QS6	4624	2021-08-10	2019-02-20	3.9	4.03	2.44	4.0	0.011	1.10	0.0	0.06	10.53	0.01	2.187	6.85	0.07	8.2	91.8	0.0	-4.07	0.57	0.46	0.09	3.9	0.006	1.00	0.0	0.05	16.83	0.01	1.618	21.78	0.37	6.3	93.7	0.0	-0.52	1.76	0.76	0.81	1.13	28557	3568	13	0	35	0	0	logfile
✔	6YSi	10898	2021-08-11	2020-04-22	2.5	2.64	2.46	2.6	0.014	0.90	0.0	0.06	15.44	0.01	1.839	5.87	5.75	4.5	95.4	0.1	-2.34	0.83	0.88	3.75	2.6	0.006	0.75	0.0	0.04	15.62	0.01	1.623	7.13	3.30	4.5	95.5	0.1	-1.41	1.08	0.83	0.89	3.67	83855	3112	35	2800	166	0	0	logfile
✔	7Ki1	22883	2021-08-08	2020-10-22	2.5	2.57	2.46	2.6	0.008	0.94	0.0	0.06	15.56	0.00	2.257	8.06	0.28	3.5	96.5	0.0	-1.64	0.64	0.81	3.96	2.6	0.004	0.60	0.0	0.04	16.96	0.00	2.083	6.02	2.22	2.1	97.9	0.0	0.86	0.53	0.65	0.84	3.73	10265	1285	11	0	1	73	0	logfile

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