Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7S1M	24805	2022-07-03	2021-09-02	2.41	2.95	2.08	2.8	0.003	0.51	1.0	0.04	13.54	0.00	2.233	5.11	0.10	1.9	98.1	0.0	1.84	0.81	0.87	3.93	2.8	0.003	0.52	1.0	0.04	15.94	0.00	2.177	5.61	0.84	1.7	98.3	0.0	1.83	0.91	0.77	0.87	3.79	9160	1168	6	0	1	0	0	logfile
✔	7JJP	22358	2022-07-07	2020-07-27	1.94	2.15	2.08	2.1	0.011	0.87	0.0	0.07	13.34	0.01	2.228	2.51	0.56	1.6	98.4	0.0	0.39	0.71	0.85	5.30	2.1	0.004	0.58	0.0	0.04	14.55	0.00	2.082	6.69	0.79	2.0	98.0	0.0	3.29	0.94	0.72	0.88	4.96	40920	2352	36	0	180	396	19104	logfile
✔	6WX6	21951	2022-07-04	2020-05-09	2.0	2.11	2.08	2.1	0.006	0.69	0.0	0.04	14.94	0.00	2.277	0.00	0.00	1.2	98.8	0.0	1.60	0.77	0.88	7.70	2.1	0.004	0.55	0.0	0.04	16.24	0.00	2.003	3.40	0.69	1.2	98.8	0.0	4.62	0.53	0.78	0.90	7.39	68332	4128	56	0	8	2420	32664	logfile
✔	6ZJA	11233	2022-07-05	2020-06-28	2.0	2.10	2.09	2.1	0.006	0.86	0.0	0.06	14.19	0.01	1.974	0.84	1.37	4.1	95.9	0.0	-0.40	0.79	0.87	6.97	2.1	0.004	0.72	0.0	0.05	15.95	0.01	1.820	1.85	0.56	4.3	95.7	0.0	0.02	0.39	0.78	0.89	6.77	77951	9684	60	0	36	3191	0	logfile
✘	6X19	21993	2022-07-03	2020-05-18	2.1	2.20	2.11	2.1	0.007	1.03	6.0	0.08	14.03	0.01	1.224	13.22	1.01	2.7	97.3	0.1	-1.61	0.73	0.84	4.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10277	1258	9	0	1	136	0	logfile
✔	6SK0	10219	2022-07-03	2019-08-14	2.3	2.30	2.11	2.2	0.008	0.74	0.0	0.05	15.85	0.00	2.202	9.23	0.97	3.3	96.7	0.0	-1.30	0.70	0.83	6.89	2.2	0.005	0.72	0.0	0.05	17.22	0.00	2.164	10.52	0.65	4.5	95.5	0.0	-1.28	1.50	0.80	0.90	6.82	5826	792	3	0	0	0	0	logfile
✔	7QET	13940	2022-07-04	2021-12-03	2.1	2.53	2.11	2.3	0.009	0.63	0.0	0.04	13.40	0.00	2.140	1.99	2.38	2.2	97.8	0.0	1.49	0.82	0.90	3.95	2.3	0.004	0.56	0.0	0.04	14.36	0.00	2.189	3.28	1.98	1.2	98.8	0.0	3.48	0.38	0.82	0.92	3.56	19205	2256	36	0	60	305	0	logfile
✘	6XZ7	10655	2022-07-06	2020-02-03	2.1	2.05	2.12	2.1	0.007	0.77	1.0	0.05	14.34	0.01	1.128	6.43	3.26	2.8	96.8	0.4	-2.20	0.41	0.69	5.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	94915	3351	45	3169	179	528	0	logfile
✔	7QK1	14028	2022-07-03	2021-12-17	3.03	3.20	2.13	3.2	0.011	1.97	2.0	0.11	12.98	0.01	2.502	0.14	0.00	5.5	94.5	0.0	-1.61	0.48	0.84	4.10	3.2	0.006	0.81	0.0	0.05	16.34	0.00	2.070	6.83	1.01	4.1	95.9	0.0	-1.96	3.39	0.42	0.84	4.26	3444	450	6	0	0	0	0	logfile
✔	7TYF	26178	2022-07-03	2022-02-13	2.2	2.16	2.13	2.2	0.004	0.57	0.0	0.04	14.43	0.00	2.234	5.27	0.87	1.8	98.2	0.0	-1.73	0.64	0.82	5.12	2.2	0.002	0.60	0.0	0.05	15.92	0.00	2.183	6.89	1.36	1.5	98.5	0.0	0.75	0.50	0.66	0.84	4.40	10331	1266	12	0	16	83	0	logfile
✔	6QJQ	4566	2022-07-02	2019-01-24	3.7	3.99	2.14	4.1	0.021	1.17	0.0	0.11	13.36	0.01	2.499	5.58	0.00	4.0	94.0	2.0	-4.41	0.39	0.75	2.60	4.1	0.004	0.79	0.0	0.05	14.26	0.00	2.261	10.37	0.00	6.0	94.0	0.0	-2.92	1.26	0.38	0.75	1.88	1218	162	6	0	0	0	0	logfile
✔	6RJU	4906	2022-07-02	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	10.0	0.003	0.66	0.0	0.03	16.23	0.00	2.422	6.03	0.00	3.9	96.1	0.0	-0.32	1.40	0.27	0.03	-0.67	1992	131	1	0	0	0	997	logfile
✔	7P6B	13224	2022-07-03	2021-07-15	2.2	1.98	2.14	2.1	0.004	0.75	0.0	0.09	13.80	0.01	2.246	4.21	0.00	3.8	96.2	0.0	-2.60	0.48	0.85	6.24	2.0	0.006	0.70	0.0	0.05	17.13	0.00	2.107	8.18	0.65	4.7	95.3	0.0	-2.26	0.86	0.49	0.88	6.83	4060	540	5	0	0	0	0	logfile
✔	7KJR	22898	2022-07-03	2020-10-26	2.08	2.52	2.15	2.4	0.006	0.84	0.0	0.05	16.31	0.00	2.254	8.14	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	2.4	0.003	0.52	0.0	0.04	16.17	0.00	2.108	10.44	0.74	2.3	97.7	0.0	1.38	0.39	0.63	0.85	4.62	3840	448	8	0	2	122	0	logfile
✔	7o6E	12738	2022-07-06	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.61	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.004	0.52	0.0	0.03	18.17	0.01	2.172	3.96	0.38	0.6	99.4	0.0	4.21	0.27	0.88	0.89	5.41	35304	4248	48	0	0	1392	0	logfile
✔	7QK6	14039	2022-07-02	2021-12-17	2.27	2.34	2.17	2.3	0.011	1.84	0.0	0.09	9.70	0.01	2.520	0.00	0.00	6.4	93.6	0.0	-1.99	0.37	0.79	7.78	2.3	0.002	0.57	0.0	0.05	15.85	0.00	2.385	4.06	0.69	5.8	94.2	0.0	-2.20	1.44	0.38	0.85	7.07	2469	162	3	0	0	0	1278	logfile
✔	7QER	13938	2022-07-04	2021-12-03	2.2	2.66	2.18	2.3	0.011	0.71	0.0	0.05	14.00	0.00	2.117	3.04	2.94	1.6	98.4	0.0	-0.05	0.84	0.88	3.46	2.3	0.003	0.57	0.0	0.04	14.90	0.00	2.228	2.27	2.00	1.0	99.0	0.0	3.45	1.24	0.84	0.89	3.51	19097	2244	36	0	60	305	0	logfile
✔	5WP9	8874	2022-07-04	2017-08-03	4.22	4.31	2.20	5.2	0.011	1.24	0.0	0.05	10.03	0.02	1.918	2.77	0.63	5.5	93.1	1.4	-0.58	0.51	0.64	—	4.8	0.003	0.66	0.0	0.04	12.33	0.01	1.866	14.52	0.00	4.5	95.2	0.3	0.15	1.85	0.50	0.69	—	117048	7352	24	0	16	0	59080	logfile
✔	7Z16	14442	2022-07-07	2022-02-24	2.09	2.57	2.21	2.5	0.006	0.73	0.0	0.05	14.14	0.01	1.956	4.94	1.04	2.1	97.9	0.0	1.45	0.77	0.85	5.34	2.5	0.004	0.57	0.0	0.05	15.13	0.00	1.827	3.31	0.33	2.1	97.9	0.0	1.34	1.98	0.71	0.84	5.18	44690	2882	20	0	10	6	22240	logfile
✔	7VFD	31949	2022-07-03	2021-09-13	2.25	2.33	2.21	2.3	0.004	0.53	0.0	0.05	12.47	0.00	2.204	3.85	0.60	3.7	96.3	0.0	-0.65	0.81	0.88	6.01	2.3	0.002	0.49	0.0	0.05	15.37	0.00	2.246	3.23	0.47	2.1	97.9	0.0	0.43	1.13	0.80	0.88	5.42	13262	1623	6	0	0	350	0	logfile

• ← previous
• Page 3 of 392
• next →