Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8A2U	15107	2023-04-23	2022-06-06	2.21	2.31	2.16	2.3	0.004	0.63	0.0	0.04	13.27	0.00	2.173	2.75	0.65	2.5	97.5	0.0	-1.41	0.72	0.86	6.31	2.3	0.002	0.59	0.0	0.04	16.64	0.00	2.155	3.93	0.52	1.3	98.7	0.0	1.13	1.06	0.73	0.88	6.00	15022	1830	15	0	15	512	0	logfile
✔	8A2T	15106	2023-04-23	2022-06-06	2.24	2.35	2.17	2.3	0.004	0.56	0.0	0.04	13.20	0.00	1.880	2.50	0.32	1.9	98.1	0.0	-1.62	0.71	0.87	5.89	2.3	0.003	0.61	0.0	0.04	16.32	0.00	1.898	3.79	0.52	1.1	98.9	0.0	1.10	0.81	0.74	0.90	5.29	15046	1830	15	0	10	556	0	logfile
✔	7ZYV	15027	2023-04-24	2022-05-25	2.13	2.84	2.17	2.6	0.007	0.70	0.0	0.05	18.57	0.01	1.927	11.83	2.20	3.9	96.1	0.0	0.99	0.78	0.90	3.60	2.6	0.003	0.59	0.0	0.04	17.78	0.00	2.186	3.85	2.08	3.4	96.6	0.0	1.50	0.39	0.77	0.90	2.95	16452	1946	29	0	32	0	0	logfile
✔	8A2S	15105	2023-04-23	2022-06-06	2.22	2.37	2.18	2.3	0.009	0.68	0.0	0.05	14.10	0.01	1.758	3.33	0.64	1.9	98.1	0.0	-1.13	0.71	0.87	6.45	2.3	0.003	0.60	0.0	0.05	16.41	0.00	1.907	4.99	0.84	1.4	98.6	0.0	0.79	0.82	0.72	0.89	5.97	15141	1835	15	0	15	591	0	logfile
✔	7QER	13938	2023-04-25	2021-12-03	2.2	2.66	2.18	2.3	0.009	0.94	0.0	0.05	14.11	0.00	2.117	3.04	2.94	1.6	98.4	0.0	-0.05	0.84	0.88	3.46	2.3	0.002	0.55	0.0	0.04	14.91	0.00	2.235	2.48	2.20	1.3	98.7	0.0	3.46	1.24	0.84	0.89	3.42	19097	2244	36	0	60	305	0	logfile
✔	8DBK	27287	2023-04-23	2022-06-14	2.1	2.15	2.19	2.1	0.012	1.13	2.0	0.06	18.10	0.04	1.760	5.45	1.07	3.9	96.0	0.1	0.54	0.71	0.86	6.31	2.1	0.003	1.50	0.0	0.05	16.92	0.00	1.840	5.62	1.52	3.5	96.5	0.0	0.65	0.40	0.72	0.90	6.08	14612	1868	18	0	30	12	0	logfile
✔	7UZS	26917	2023-04-21	2022-05-09	2.2	2.05	2.19	2.0	0.004	0.72	0.0	0.05	17.96	0.01	2.217	2.70	1.79	1.1	98.9	0.0	1.09	0.64	0.87	6.60	2.1	0.004	0.58	0.0	0.04	17.92	0.00	2.030	4.15	2.15	2.2	97.8	0.0	1.03	0.31	0.64	0.87	6.34	10550	658	1	0	0	193	5183	logfile
✔	7TZF	26208	2023-04-21	2022-02-15	2.4	2.00	2.20	2.3	0.004	0.53	0.0	0.04	14.56	0.00	2.252	4.74	1.43	1.0	99.0	0.0	-2.36	0.54	0.77	4.70	2.0	0.002	0.55	0.0	0.04	16.89	0.00	2.212	5.33	1.72	1.7	98.3	0.0	0.92	0.83	0.56	0.82	4.60	10342	1272	13	0	19	25	0	logfile
✔	8GVK	32099	2023-04-20	2022-09-15	2.2	2.06	2.20	2.2	0.006	1.29	0.0	0.06	15.35	0.00	2.057	5.53	4.07	3.4	94.0	2.6	-1.54	0.65	0.80	5.76	2.1	0.003	0.77	0.0	0.04	15.42	0.00	2.211	9.90	2.62	4.3	94.9	0.9	-0.94	0.88	0.74	0.85	6.36	3567	476	8	0	0	19	0	logfile
✔	7ZHG	14731	2023-04-22	2022-04-06	2.25	2.12	2.20	2.2	0.016	0.85	3.0	0.04	13.95	0.06	1.889	2.84	1.41	3.3	96.7	0.0	0.18	0.70	0.86	5.31	2.2	0.004	1.22	0.0	0.04	16.05	0.01	1.874	3.96	0.88	2.9	97.1	0.0	0.54	0.38	0.72	0.88	4.97	64278	3601	69	1533	96	2083	0	logfile
✔	8DBF	27282	2023-04-29	2022-06-14	2.2	2.32	2.21	2.3	0.014	0.99	0.0	0.05	17.66	0.05	1.866	9.33	3.08	4.1	95.9	0.0	0.97	0.74	0.87	5.47	2.3	0.003	1.61	0.0	0.05	17.73	0.00	1.853	5.92	1.93	2.2	97.8	0.0	0.39	1.14	0.75	0.89	5.72	29964	3792	36	0	60	84	0	logfile
✔	7VFD	31949	2023-04-22	2021-09-13	2.25	2.33	2.21	2.3	0.004	0.53	0.0	0.05	12.47	0.00	2.204	3.62	0.60	3.7	96.3	0.0	-0.65	0.81	0.88	6.01	2.3	0.003	0.52	0.0	0.05	15.49	0.00	2.222	3.42	0.40	1.8	98.2	0.0	0.35	1.13	0.80	0.89	5.60	13262	1623	6	0	0	350	0	logfile
✔	6WZG	21972	2023-04-21	2020-05-13	2.3	2.06	2.21	2.3	0.012	1.56	18.0	0.12	14.02	0.01	2.270	4.92	1.65	2.0	98.0	0.0	0.81	0.66	0.71	4.83	2.3	0.004	0.62	0.0	0.04	16.41	0.00	2.112	6.07	1.54	1.9	98.1	0.0	1.42	0.99	0.73	0.87	5.09	8939	1165	6	0	0	0	0	logfile
✔	7ZZ0	15030	2023-04-20	2022-05-25	2.26	2.63	2.22	2.1	0.004	0.71	0.0	0.05	16.82	0.00	2.149	3.28	1.96	1.9	98.1	0.0	-0.34	0.92	0.91	4.41	2.1	0.003	0.53	0.0	0.04	16.72	0.00	2.106	5.73	1.96	1.5	98.5	0.0	1.21	0.19	0.92	0.91	4.56	4387	541	1	0	2	84	0	logfile
✔	7ZZ1	15031	2023-04-20	2022-05-25	2.27	2.59	2.22	2.1	0.007	0.89	0.0	0.05	18.21	0.01	2.159	3.90	2.68	2.6	97.4	0.0	-1.05	0.91	0.90	4.22	2.1	0.003	0.60	0.0	0.04	17.94	0.00	2.116	8.71	2.87	2.6	97.4	0.0	1.09	1.10	0.91	0.90	4.07	4958	618	5	0	4	55	0	logfile
✔	7XXF	33501	2023-04-29	2022-05-30	2.24	2.16	2.23	2.2	0.023	2.96	0.0	0.05	21.41	0.02	2.014	7.34	1.31	2.8	97.2	0.0	1.59	0.77	0.88	5.31	2.2	0.003	1.46	0.0	0.04	18.67	0.00	1.986	7.47	1.02	2.8	97.2	0.0	2.26	0.89	0.77	0.90	4.60	29826	3004	120	0	98	538	0	logfile
✔	7PK6	13466	2023-04-24	2021-08-25	2.15	2.27	2.23	2.3	0.005	0.60	0.0	0.05	17.06	0.01	1.864	4.25	2.22	2.0	98.0	0.0	1.43	0.73	0.77	4.80	2.2	0.003	0.55	0.0	0.04	17.46	0.00	2.152	6.42	2.12	2.2	97.8	0.0	1.53	0.87	0.78	0.88	4.85	120580	15100	20	0	0	0	0	logfile
✔	7RTB	24680	2023-04-21	2021-08-12	2.14	2.32	2.23	2.3	0.003	0.57	0.0	0.04	14.48	0.00	2.277	5.37	0.77	1.6	98.4	0.0	-0.80	0.64	0.69	3.38	2.3	0.003	0.59	0.0	0.04	17.07	0.00	2.260	5.43	2.77	2.7	97.3	0.0	1.12	0.68	0.68	0.82	3.99	8972	1169	7	0	0	1	0	logfile
✔	7oNJ	12996	2023-04-24	2021-05-25	2.3	2.52	2.24	2.5	0.009	0.86	0.0	0.05	18.33	0.00	2.155	8.48	0.47	0.8	99.2	0.0	-0.25	0.76	0.88	5.16	2.5	0.002	0.46	0.0	0.04	18.08	0.00	2.173	8.46	0.61	0.8	99.2	0.0	2.22	1.14	0.75	0.89	4.38	16947	1834	21	0	63	266	0	logfile
✔	7QRU	14124	2023-04-23	2022-01-12	2.24	2.32	2.24	2.4	0.020	2.18	9.0	0.10	14.53	0.02	2.058	6.63	2.50	2.6	97.4	0.1	-1.62	0.79	0.91	4.88	2.4	0.004	0.60	0.0	0.04	15.74	0.00	2.169	5.83	1.43	0.9	99.1	0.0	2.24	1.15	0.79	0.90	4.06	16100	1957	18	0	3	360	0	logfile

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