Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QJW	14024	2023-11-14	2021-12-17	2.81	2.81	1.88	2.9	0.012	2.09	0.0	0.10	11.96	0.01	2.556	0.00	0.00	2.3	96.3	1.4	-1.19	0.34	0.72	5.41	2.8	0.003	0.63	0.0	0.05	15.65	0.00	2.366	4.13	1.01	2.7	97.3	0.0	-1.58	1.60	0.38	0.78	4.37	7032	450	6	0	0	0	3588	logfile
✔	8oRM	17129	2023-11-13	2023-04-14	1.9	1.83	1.88	1.9	0.004	0.58	0.0	0.04	16.77	0.00	2.236	3.99	0.90	1.6	98.2	0.2	1.88	0.70	0.81	5.96	1.9	0.005	0.69	0.0	0.05	16.78	0.01	2.187	6.14	1.08	1.5	98.4	0.2	1.36	0.18	0.70	0.83	5.92	5341	632	7	0	2	210	0	logfile
✔	7QEQ	13937	2023-11-17	2021-12-03	1.9	2.38	1.89	2.1	0.005	0.87	0.0	0.04	12.39	0.00	2.181	2.19	1.18	1.1	98.9	0.0	1.60	0.82	0.90	4.56	2.1	0.003	0.58	0.0	0.04	14.10	0.00	2.251	2.71	1.18	1.8	98.2	0.0	3.93	0.99	0.82	0.92	4.12	19313	2268	36	0	60	305	0	logfile
✘	8BQV	16188	2023-11-14	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.01	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✔	8CPS	16784	2023-11-21	2023-03-03	1.82	1.69	1.90	1.7	0.003	0.66	0.0	0.05	15.42	0.01	2.116	2.82	0.00	1.0	99.0	0.0	2.28	0.75	0.81	8.54	1.7	0.003	0.58	0.0	0.04	17.00	0.00	2.154	4.46	0.16	1.2	98.8	0.0	4.78	0.30	0.77	0.83	8.39	36034	4152	72	0	38	1916	0	logfile
✔	8Q8C	18250	2023-11-14	2023-08-18	1.92	1.98	1.90	2.0	0.011	1.66	0.0	0.08	10.69	0.01	2.505	0.00	0.27	1.2	98.8	0.0	-1.44	0.21	0.65	7.52	1.9	0.003	0.56	0.0	0.05	16.18	0.00	2.145	1.81	0.27	1.4	98.6	0.0	-1.06	1.98	0.39	0.90	7.60	6618	429	6	0	0	0	3372	logfile
✔	7QKY	14057	2023-11-13	2021-12-19	1.86	2.10	1.91	2.0	0.011	1.75	3.0	0.09	12.76	0.01	2.522	1.04	0.61	4.7	95.3	0.0	-3.08	0.33	0.75	8.32	2.0	0.004	0.74	0.0	0.05	16.56	0.00	2.028	5.37	0.61	6.2	93.8	0.0	-3.22	1.00	0.39	0.84	7.47	5760	396	6	0	0	0	2862	logfile
✘	8CU8	26996	2023-11-21	2022-05-16	1.91	2.52	1.91	2.2	0.005	0.65	0.0	0.05	13.91	0.01	2.043	0.74	0.00	0.6	99.4	0.0	1.28	0.87	0.93	5.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35271	4032	72	0	24	2271	0	logfile
✔	8F0K	28759	2023-11-15	2022-11-03	1.9	1.70	1.92	1.9	0.010	0.59	0.0	0.04	14.21	0.01	2.252	4.34	0.91	1.2	98.8	0.0	-1.70	0.50	0.67	4.75	1.9	0.004	0.68	0.0	0.04	16.58	0.00	2.187	6.72	1.09	2.1	97.9	0.0	1.33	0.64	0.58	0.73	4.97	10553	1272	12	0	18	39	0	logfile
✔	8AB6	15312	2023-11-21	2022-07-04	2.0	1.80	1.92	1.9	0.010	1.60	28.0	0.11	16.94	0.01	2.091	3.07	1.89	2.3	97.7	0.0	-0.82	0.68	0.86	6.61	1.9	0.003	0.59	0.0	0.04	16.51	0.00	2.033	3.75	0.65	1.6	98.4	0.0	2.05	0.98	0.72	0.87	6.11	32914	3878	53	0	30	1326	0	logfile
✔	8Q27	18070	2023-11-14	2023-08-01	2.02	1.98	1.92	2.0	0.011	1.74	0.0	0.08	11.92	0.01	2.517	0.00	1.27	2.3	97.7	0.0	-1.63	0.21	0.69	8.02	2.0	0.002	0.54	0.0	0.05	17.00	0.00	2.208	1.57	0.51	2.5	97.5	0.0	-1.37	1.20	0.34	0.88	7.21	7002	453	6	0	0	0	3567	logfile
✔	8CA7	16520	2023-11-17	2023-01-24	2.06	1.61	1.93	1.9	0.012	1.53	0.0	0.14	14.84	0.03	1.726	0.60	0.71	3.0	96.8	0.1	-1.46	0.62	0.75	4.98	1.9	0.004	0.78	0.0	0.05	15.37	0.01	1.755	8.56	1.56	2.2	97.7	0.1	1.22	0.46	0.68	0.78	4.87	18093	848	19	502	42	543	0	logfile
✔	7MBX	23749	2023-11-14	2021-04-01	1.95	2.56	1.94	2.4	0.012	0.88	1.0	0.06	11.68	0.01	2.287	2.16	0.45	1.5	98.5	0.0	-0.11	0.72	0.86	4.55	2.3	0.002	0.58	0.0	0.04	15.24	0.00	2.221	6.49	0.78	1.1	98.9	0.0	1.97	0.54	0.71	0.87	4.45	8433	1065	11	0	2	61	0	logfile
✔	8iRR	35683	2023-11-16	2023-03-19	3.2	3.00	1.94	3.1	0.013	1.82	3.0	0.09	12.68	0.02	2.395	1.16	0.00	3.9	96.1	0.0	-0.37	0.53	0.79	4.38	3.0	0.003	0.53	0.0	0.04	14.98	0.00	2.118	6.51	0.45	2.7	97.3	0.0	0.63	0.77	0.53	0.82	3.37	16329	1032	5	0	4	2	8080	logfile
✔	8F0J	28758	2023-11-14	2022-11-03	2.0	1.77	1.94	1.9	0.011	0.61	1.0	0.05	14.78	0.00	2.246	4.03	0.40	1.1	98.9	0.0	-1.49	0.53	0.75	5.18	1.9	0.003	0.58	0.0	0.04	16.66	0.00	2.212	5.89	1.01	2.1	97.9	0.0	1.58	0.82	0.54	0.77	5.38	9678	1157	11	0	18	25	0	logfile
✔	8PPo	17806	2023-11-13	2023-07-07	2.0	2.30	1.95	2.2	0.008	1.20	1.0	0.07	13.41	0.01	2.625	0.29	0.00	6.7	93.3	0.0	0.71	0.58	0.84	6.50	2.2	0.004	0.53	0.0	0.06	13.89	0.00	2.300	0.00	1.04	0.0	100.0	0.0	1.18	0.38	0.50	0.88	5.61	1696	240	16	0	0	0	0	logfile
✔	8P6Y	17511	2023-11-13	2023-05-30	1.9	1.73	1.95	1.9	0.005	0.60	0.0	0.04	16.82	0.00	2.148	3.62	0.36	1.0	98.9	0.2	1.99	0.68	0.84	6.33	1.9	0.004	0.63	0.0	0.04	16.85	0.00	2.148	4.60	0.90	1.3	98.5	0.2	1.74	0.21	0.68	0.85	6.33	5266	630	7	0	3	158	0	logfile
✔	6QJM	4564	2023-11-13	2019-01-24	3.3	3.49	1.95	3.4	0.010	1.01	0.0	0.07	8.06	0.01	2.408	6.17	0.00	9.1	90.9	0.0	-2.36	0.38	0.76	3.31	3.5	0.003	0.57	0.0	0.05	13.66	0.00	2.146	4.49	0.00	5.1	94.9	0.0	-2.42	1.59	0.33	0.73	2.58	846	111	3	0	0	0	0	logfile
✔	8D8R	27255	2023-11-13	2022-06-08	4.1	4.18	1.95	4.1	0.011	1.25	0.0	0.06	11.00	0.01	2.512	1.08	0.00	2.1	97.9	0.0	1.96	0.59	0.61	—	4.1	0.003	0.75	0.0	0.05	12.45	0.01	2.191	14.44	0.00	6.7	93.3	0.0	-0.58	1.90	0.62	0.66	—	3323	425	3	0	1	0	0	logfile
✔	6ZRF	11380	2023-11-13	2020-07-13	3.6	3.66	1.96	3.6	0.014	1.28	0.0	0.05	15.23	0.00	1.993	42.14	0.00	4.9	95.1	0.0	-6.22	0.67	0.79	1.84	3.7	0.005	0.78	0.0	0.05	15.71	0.00	2.253	22.30	0.42	13.3	86.7	0.0	-5.85	0.52	0.70	0.82	3.46	2220	300	12	0	0	0	0	logfile

• ← previous
• Page 3 of 528
• next →