Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6SAG	10130	2022-12-11	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.004	0.65	0.0	0.04	15.31	0.01	2.030	3.13	1.19	3.0	97.0	0.0	1.39	0.73	0.59	0.89	6.90	54080	6120	240	120	240	2840	0	logfile
✔	7VD8	31910	2022-12-20	2021-09-06	1.96	1.42	2.01	1.7	0.002	0.54	0.0	0.04	16.17	0.00	2.013	3.17	0.03	2.2	97.8	0.0	5.39	0.75	0.80	7.92	1.7	0.002	0.55	0.0	0.04	16.50	0.00	2.001	2.61	0.05	1.5	98.5	0.0	5.41	0.23	0.74	0.80	8.03	38201	4128	72	0	329	2472	0	logfile
✘	7D1U	30548	2022-12-22	2020-09-15	2.08	1.94	2.04	2.0	0.018	1.83	27.0	0.10	18.50	0.02	1.202	4.10	3.09	2.3	97.5	0.2	-1.36	0.74	0.87	6.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52655	5312	106	0	196	2121	0	logfile
✘	7Z18	14444	2022-12-20	2022-02-24	1.98	2.40	2.04	2.3	0.008	0.94	0.0	0.06	15.02	0.01	1.726	3.47	1.19	1.9	98.1	0.0	1.45	0.79	0.82	5.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37659	2432	18	0	10	2	18660	logfile
✔	6RiU	4898	2022-12-11	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.003	0.67	0.0	0.03	16.53	0.00	2.057	13.17	0.00	5.1	94.9	0.0	-0.39	1.43	0.61	0.75	1.30	2882	182	2	0	0	0	1430	logfile
✘	7oY2	13108	2022-12-18	2021-06-23	2.06	2.12	2.05	2.2	0.007	0.99	1.0	0.05	16.10	0.01	1.205	13.44	0.42	0.8	99.2	0.0	1.10	0.77	0.84	5.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7166	858	7	0	7	24	0	logfile
✔	7TU5	26126	2022-12-20	2022-02-02	2.1	1.97	2.06	1.8	0.009	0.85	6.0	0.06	15.88	0.01	1.910	4.49	1.54	1.4	98.6	0.0	0.64	0.84	0.82	4.27	1.7	0.004	0.52	0.0	0.04	16.37	0.00	1.944	5.78	1.95	1.3	98.6	0.1	1.74	0.43	0.87	0.87	4.95	19656	2574	18	0	6	6	0	logfile
✔	6A6B	6988	2022-12-11	2018-06-27	3.07	3.41	2.07	3.4	0.006	1.07	0.0	0.07	7.61	0.00	2.263	7.15	0.00	11.3	88.7	0.0	-3.85	0.53	0.71	3.91	3.4	0.007	0.80	0.0	0.05	13.63	0.00	2.135	20.16	1.11	10.7	89.3	0.0	-3.01	2.16	0.52	0.71	3.25	5256	756	12	0	0	0	0	logfile
✔	7QKH	14042	2022-12-11	2021-12-17	3.17	3.37	2.07	3.5	0.011	2.48	5.0	0.19	15.22	0.01	2.470	2.26	0.00	14.6	85.4	0.0	-3.56	0.37	0.74	3.98	3.5	0.004	0.97	0.0	0.22	15.37	0.00	2.116	8.71	0.00	6.8	93.2	0.0	-2.57	2.30	0.31	0.69	4.34	3105	204	6	0	0	0	1593	logfile
✔	7JJP	22358	2022-12-21	2020-07-27	1.94	2.15	2.08	2.1	0.011	0.87	0.0	0.07	13.34	0.01	2.228	2.51	0.56	1.6	98.4	0.0	0.39	0.71	0.85	5.30	2.1	0.003	0.54	0.0	0.04	14.41	0.00	2.090	6.65	0.65	1.7	98.3	0.0	3.45	0.92	0.71	0.87	4.95	40920	2352	36	0	180	396	19104	logfile
✔	6WX6	21951	2022-12-13	2020-05-09	2.0	2.11	2.08	2.1	0.006	0.69	0.0	0.04	14.94	0.00	2.277	0.00	0.00	1.2	98.8	0.0	1.60	0.77	0.88	7.70	2.1	0.004	0.55	0.0	0.04	16.24	0.00	2.003	3.40	0.69	1.2	98.8	0.0	4.62	0.53	0.79	0.90	7.39	68332	4128	56	0	8	2420	32664	logfile
✔	7S1M	24805	2022-12-12	2021-09-02	2.41	2.95	2.08	2.8	0.003	0.51	1.0	0.04	13.54	0.00	2.233	5.12	0.10	1.9	98.1	0.0	1.84	0.81	0.87	3.93	2.8	0.003	0.52	1.0	0.04	15.94	0.00	2.177	5.62	0.84	1.7	98.3	0.0	1.83	0.91	0.77	0.87	3.79	9160	1168	6	0	1	0	0	logfile
✔	6ZJA	11233	2022-12-15	2020-06-28	2.0	2.10	2.09	2.1	0.006	0.86	0.0	0.06	14.14	0.01	1.974	0.84	1.37	4.1	95.9	0.0	-0.40	0.79	0.87	6.97	2.1	0.003	0.66	0.0	0.05	15.95	0.00	1.866	1.79	0.56	4.2	95.8	0.0	0.14	0.39	0.78	0.90	6.69	77951	9684	60	0	36	3191	0	logfile
✔	8A2Y	15108	2022-12-13	2022-06-06	2.15	2.21	2.10	2.2	0.005	0.61	0.0	0.05	13.42	0.00	2.177	2.56	0.64	1.9	98.1	0.0	-1.01	0.72	0.87	6.39	2.2	0.004	0.67	0.0	0.05	15.94	0.00	2.130	4.30	0.77	1.2	98.8	0.0	0.86	0.80	0.72	0.89	6.16	15078	1835	15	0	15	528	0	logfile
✘	7UT8	26760	2022-12-18	2022-04-26	2.43	1.94	2.10	1.7	0.020	0.64	0.0	0.05	18.54	0.00	1.974	9.48	3.66	3.2	96.7	0.1	0.19	0.82	0.82	3.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20221	2538	18	0	13	29	0	logfile
✔	8D1G	27129	2022-12-13	2022-05-27	2.07	2.29	2.10	2.3	0.006	0.69	0.0	0.04	19.81	0.00	2.207	13.54	0.66	1.2	98.8	0.0	1.81	0.74	0.85	5.81	2.3	0.002	0.48	0.0	0.04	16.91	0.00	2.240	6.59	0.59	1.2	98.8	0.0	2.03	0.90	0.71	0.86	5.46	16201	1735	15	0	61	620	0	logfile
✔	6SK0	10219	2022-12-11	2019-08-14	2.3	2.30	2.11	2.2	0.008	0.74	0.0	0.05	15.85	0.00	2.202	9.23	0.97	3.3	96.7	0.0	-1.30	0.70	0.83	6.89	2.2	0.005	0.72	0.0	0.05	17.22	0.00	2.164	10.52	0.65	4.5	95.5	0.0	-1.28	1.50	0.80	0.91	6.82	5826	792	3	0	0	0	0	logfile
✔	6X19	21993	2022-12-12	2020-05-18	2.1	2.20	2.11	2.1	0.009	1.31	6.0	0.08	14.25	0.01	2.134	13.22	1.01	2.7	97.3	0.1	-1.61	0.73	0.84	4.93	2.2	0.003	0.77	0.0	0.04	16.73	0.00	2.115	6.69	1.28	2.1	97.9	0.0	1.13	1.01	0.72	0.88	4.61	10277	1258	9	0	1	136	0	logfile
✔	7QET	13940	2022-12-14	2021-12-03	2.1	2.53	2.11	2.3	0.009	0.63	0.0	0.04	13.40	0.00	2.140	1.99	2.38	2.2	97.8	0.0	1.49	0.82	0.90	3.95	2.3	0.004	0.56	0.0	0.04	14.36	0.00	2.189	3.28	1.98	1.2	98.8	0.0	3.48	0.38	0.82	0.92	3.56	19205	2256	36	0	60	305	0	logfile
✔	8A2Z	15109	2022-12-13	2022-06-06	2.15	2.27	2.11	2.2	0.004	0.58	0.0	0.04	11.91	0.00	2.190	1.81	0.00	2.1	97.7	0.3	-1.13	0.74	0.87	6.56	2.2	0.002	0.57	0.0	0.04	15.42	0.00	2.061	4.38	0.65	1.7	98.3	0.0	1.21	1.46	0.74	0.89	5.74	15060	1830	15	0	10	570	0	logfile

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