The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5LiJ | 4054 | 2023-09-27 | 2016-07-14 | 4.2 | 3.63 | — | 4.2 | 0.009 | 2.92 | 4.0 | 0.17 | 15.82 | 0.01 | 2.249 | 25.64 | 0.00 | 10.7 | 89.3 | 0.0 | -6.36 | 0.85 | 0.76 | — | 3.8 | 0.005 | 1.18 | 0.0 | 0.04 | 10.31 | 0.00 | 2.148 | 15.12 | 0.00 | 32.0 | 68.0 | 0.0 | -5.66 | 1.48 | 0.86 | 0.78 | — | 761 | 152 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LJ3 | 4055 | 2023-09-30 | 2016-07-17 | 3.8 | 3.92 | — | 3.8 | 0.007 | 1.46 | 40.0 | 0.09 | 17.30 | 0.01 | 1.631 | 5.99 | 8.54 | 8.1 | 90.7 | 1.2 | -1.69 | 0.70 | 0.81 | 1.37 | 3.8 | 0.003 | 0.72 | 0.0 | 0.04 | 17.06 | 0.00 | 2.050 | 14.82 | 0.42 | 4.8 | 95.1 | 0.2 | 0.33 | 0.87 | 0.69 | 0.78 | 1.35 | 63161 | 7305 | 45 | 458 | 142 | 0 | 0 | logfile |
✔ | 5LKi | 4068 | 2023-09-28 | 2016-07-22 | 3.46 | 3.72 | — | 3.5 | 0.013 | 1.24 | 5.0 | 0.06 | 10.71 | 0.01 | 0.579 | 39.51 | 0.18 | 7.7 | 91.7 | 0.6 | -4.39 | 0.65 | 0.79 | 2.37 | 3.5 | 0.004 | 0.83 | 0.0 | 0.04 | 15.10 | 0.00 | 2.088 | 15.46 | 0.70 | 7.1 | 92.5 | 0.4 | 0.24 | 0.81 | 0.63 | 0.80 | 1.65 | 55415 | 7135 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LL6 | 4071 | 2023-09-28 | 2016-07-26 | 3.9 | 4.01 | — | 3.9 | 0.012 | 1.50 | 6.0 | 0.11 | 19.04 | 0.01 | 0.924 | 4.96 | 2.53 | 10.6 | 85.7 | 3.7 | -3.86 | 0.69 | 0.82 | 1.20 | 3.9 | 0.009 | 1.02 | 0.0 | 0.05 | 19.15 | 0.01 | 1.728 | 25.33 | 1.83 | 13.9 | 85.1 | 0.9 | -2.96 | 0.90 | 0.70 | 0.81 | 1.06 | 55262 | 3429 | 20 | 1325 | 5 | 0 | 0 | logfile |
✔ | 5LMU | 4080 | 2023-09-28 | 2016-08-01 | 4.0 | 4.12 | 4.00 | 4.0 | 0.008 | 1.44 | 43.0 | 0.12 | 21.34 | 0.02 | 1.289 | 21.15 | 25.30 | 12.0 | 84.2 | 3.8 | -2.57 | 0.73 | 0.78 | — | 4.0 | 0.006 | 0.86 | 0.0 | 0.04 | 17.76 | 0.01 | 1.776 | 29.46 | 1.59 | 8.7 | 90.7 | 0.6 | -1.67 | 0.88 | 0.76 | 0.84 | — | 55195 | 2550 | 29 | 1612 | 82 | 0 | 0 | logfile |
✔ | 5LMV | 4083 | 2023-09-29 | 2016-08-01 | 4.9 | 6.86 | 6.64 | 6.7 | 0.008 | 1.34 | 34.0 | 0.11 | 20.14 | 0.01 | 0.977 | 14.22 | 15.18 | 9.6 | 87.9 | 2.5 | -1.98 | 0.70 | 0.58 | — | 6.7 | 0.003 | 0.72 | 0.0 | 0.04 | 16.73 | 0.01 | 2.048 | 27.68 | 0.00 | 6.8 | 92.7 | 0.5 | -1.55 | 2.19 | 0.77 | 0.75 | — | 59470 | 3124 | 30 | 1612 | 4 | 0 | 0 | logfile |
✘ | 5LMR | 4077 | 2023-09-28 | 2016-08-01 | 4.45 | 4.71 | 4.60 | 4.4 | 0.008 | 1.39 | 20.0 | 0.12 | 20.52 | 0.02 | 1.426 | 17.92 | 16.73 | 8.7 | 88.5 | 2.8 | -2.16 | 0.79 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 55662 | 2628 | 29 | 1609 | 4 | 0 | 0 | logfile |
✔ | 5LMo | 4074 | 2023-09-28 | 2016-08-01 | 4.3 | 4.71 | 4.30 | 4.3 | 0.009 | 1.47 | 50.0 | 0.12 | 20.86 | 0.01 | 0.865 | 18.49 | 20.40 | 10.6 | 85.8 | 3.6 | -2.76 | 0.80 | 0.69 | — | 4.3 | 0.005 | 0.80 | 0.0 | 0.04 | 16.93 | 0.01 | 0.957 | 39.06 | 0.00 | 9.6 | 89.9 | 0.5 | -1.93 | 2.18 | 0.88 | 0.84 | — | 54110 | 2622 | 29 | 1533 | 110 | 0 | 0 | logfile |
✔ | 5LMQ | 4076 | 2023-09-28 | 2016-08-01 | 4.2 | 4.46 | 4.25 | 4.2 | 0.009 | 1.44 | 30.0 | 0.12 | 20.84 | 0.02 | 1.387 | 19.43 | 21.46 | 10.5 | 86.1 | 3.4 | -2.56 | 0.80 | 0.76 | — | 4.2 | 0.003 | 0.72 | 0.0 | 0.03 | 16.43 | 0.01 | 1.903 | 23.92 | 0.05 | 7.4 | 92.2 | 0.5 | -1.12 | 1.62 | 0.84 | 0.84 | — | 55841 | 2635 | 29 | 1612 | 66 | 0 | 0 | logfile |
✔ | 5LMT | 4079 | 2023-09-28 | 2016-08-01 | 4.15 | 4.33 | 4.20 | 4.2 | 0.008 | 1.43 | 21.0 | 0.12 | 20.76 | 0.02 | 1.290 | 18.78 | 22.35 | 11.9 | 84.8 | 3.3 | -2.73 | 0.77 | 0.76 | — | 4.1 | 0.005 | 0.79 | 0.0 | 0.04 | 16.67 | 0.01 | 1.811 | 29.47 | 0.00 | 9.0 | 90.6 | 0.4 | -1.66 | 0.91 | 0.80 | 0.83 | — | 55776 | 2622 | 31 | 1612 | 88 | 0 | 0 | logfile |
✔ | 5LMN | 4073 | 2023-09-28 | 2016-08-01 | 3.55 | 3.68 | 3.61 | 3.6 | 0.007 | 1.42 | 35.0 | 0.12 | 20.67 | 0.01 | 0.925 | 19.85 | 21.59 | 10.4 | 86.7 | 2.8 | -2.30 | 0.79 | 0.88 | 1.35 | 3.6 | 0.006 | 0.76 | 0.0 | 0.04 | 17.16 | 0.01 | 1.813 | 21.10 | 1.18 | 7.4 | 92.4 | 0.2 | -1.24 | 1.56 | 0.77 | 0.84 | 1.47 | 54149 | 2623 | 27 | 1534 | 129 | 0 | 0 | logfile |
✔ | 5SY1 | 8315 | 2023-09-30 | 2016-08-10 | 3.9 | 3.66 | 3.96 | 3.8 | 0.008 | 1.02 | 0.0 | 0.05 | 10.05 | 0.01 | 1.524 | 5.60 | 0.08 | 7.1 | 92.7 | 0.1 | -5.23 | 0.51 | 0.62 | 1.65 | 3.7 | 0.003 | 0.75 | 0.0 | 0.04 | 15.30 | 0.00 | 2.152 | 10.11 | 0.24 | 5.4 | 94.6 | 0.0 | 0.02 | 0.93 | 0.62 | 0.78 | 1.19 | 11462 | 1458 | 8 | 0 | 10 | 0 | 0 | logfile |
✘ | 5GUP | 9539 | 2023-09-28 | 2016-08-30 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109982 | 13895 | 107 | 0 | 77 | 0 | 0 | logfile |
✔ | 5LY6 | 4118 | 2023-09-27 | 2016-09-24 | 4.5 | 4.72 | — | 4.3 | 0.006 | 1.24 | 0.0 | 0.03 | 24.28 | 0.02 | 1.526 | 94.62 | 36.32 | 20.9 | 74.2 | 4.9 | -5.32 | 0.34 | 0.59 | — | 4.4 | 0.003 | 0.77 | 0.0 | 0.04 | 13.91 | 0.00 | 2.223 | 14.60 | 0.00 | 8.3 | 91.5 | 0.2 | -2.31 | 3.59 | 0.40 | 0.76 | — | 3725 | 471 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5H1C | 9567 | 2023-09-28 | 2016-10-08 | 4.5 | 4.34 | — | 3.8 | 0.009 | 1.30 | 0.0 | 0.05 | 14.98 | 0.00 | 1.454 | 41.46 | 4.44 | 4.9 | 92.8 | 2.3 | -2.37 | 0.52 | 0.66 | — | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 15.18 | 0.00 | 1.869 | 13.78 | 0.00 | 4.6 | 94.5 | 1.0 | 0.60 | 1.56 | 0.58 | 0.82 | — | 7602 | 933 | 8 | 18 | 6 | 0 | 0 | logfile |
✔ | 5H1B | 9566 | 2023-09-28 | 2016-10-08 | 4.4 | 3.94 | — | 3.6 | 0.010 | 1.41 | 0.0 | 0.06 | 13.44 | 0.01 | 1.503 | 54.25 | 5.67 | 6.2 | 91.1 | 2.6 | -1.51 | 0.59 | 0.70 | — | 3.6 | 0.003 | 0.66 | 0.0 | 0.04 | 13.82 | 0.00 | 1.986 | 15.03 | 0.00 | 3.2 | 95.9 | 0.9 | 0.60 | 2.70 | 0.65 | 0.81 | — | 7359 | 924 | 7 | 9 | 6 | 0 | 0 | logfile |
✔ | 5M5H | 4155 | 2023-09-27 | 2016-10-21 | 4.5 | 2.29 | — | 2.2 | 0.007 | 1.50 | 0.0 | 0.08 | 12.37 | 0.01 | 2.186 | 39.89 | 0.00 | 8.7 | 88.9 | 2.4 | -5.94 | 0.14 | 0.14 | — | 2.1 | 0.004 | 0.89 | 0.0 | 0.05 | 12.67 | 0.01 | 2.275 | 23.84 | 0.00 | 8.7 | 91.3 | 0.0 | -1.45 | 2.20 | 0.15 | 0.14 | — | 1086 | 132 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5M6S | 3451 | 2023-09-27 | 2016-10-25 | 4.8 | 5.27 | — | 6.5 | 0.005 | 0.84 | 0.0 | 0.04 | 27.97 | 0.00 | 2.447 | 23.24 | 44.05 | 7.3 | 89.6 | 3.1 | -5.37 | 0.01 | 0.04 | — | 5.6 | 0.003 | 0.63 | 0.0 | 0.03 | 18.81 | 0.00 | 1.995 | 10.68 | 0.00 | 6.2 | 93.8 | 0.0 | 2.64 | 2.46 | 0.03 | 0.08 | — | 1593 | 98 | 1 | 0 | 0 | 0 | 793 | logfile |
✔ | 5TTP | 8467 | 2023-09-28 | 2016-11-04 | 4.8 | 4.88 | — | 4.5 | 0.006 | 1.36 | 0.0 | 0.06 | 11.70 | 0.01 | 2.038 | 24.92 | 0.00 | 14.1 | 85.2 | 0.7 | -5.87 | 0.61 | 0.60 | — | 4.6 | 0.002 | 0.77 | 0.0 | 0.04 | 5.16 | 0.00 | 2.264 | 6.32 | 0.00 | 13.8 | 85.9 | 0.4 | 0.24 | 1.81 | 0.66 | 0.69 | — | 5616 | 1138 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5TV4 | 8469 | 2023-09-28 | 2016-11-08 | 4.2 | 4.13 | — | 4.0 | 0.008 | 1.26 | 0.0 | 0.06 | 12.84 | 0.01 | 1.511 | 46.46 | 0.48 | 13.1 | 86.2 | 0.7 | -5.82 | 0.48 | 0.57 | — | 4.0 | 0.003 | 0.76 | 0.0 | 0.04 | 10.72 | 0.00 | 2.171 | 9.49 | 0.00 | 6.3 | 93.7 | 0.0 | -0.05 | 1.54 | 0.55 | 0.67 | — | 6548 | 1140 | 5 | 0 | 17 | 0 | 0 | logfile |