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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3J9J | 5778 | 2022-12-14 | 2015-02-02 | 3.275 | 3.52 | 3.19 | 3.6 | 0.015 | 1.08 | 0.0 | 0.09 | 9.35 | 0.01 | 2.266 | 2.70 | 0.00 | 3.3 | 94.5 | 2.2 | -0.65 | 0.53 | 0.57 | 2.57 | 3.5 | 0.003 | 0.65 | 0.0 | 0.04 | 15.80 | 0.00 | 1.905 | 14.19 | 0.17 | 6.7 | 92.7 | 0.6 | 2.30 | 3.87 | 0.59 | 0.76 | 1.97 | 21068 | 1260 | 4 | 0 | 0 | 0 | 10624 | logfile |
✔ | 3J9P | 6267 | 2022-12-13 | 2015-02-14 | 4.24 | 2.59 | — | 4.1 | 0.009 | 1.84 | 4.0 | 0.07 | 17.68 | 0.01 | 2.113 | 26.59 | 4.64 | 10.2 | 88.2 | 1.6 | -3.58 | 0.73 | 0.78 | — | 4.2 | 0.003 | 1.08 | 0.0 | 0.04 | 13.94 | 0.00 | 2.147 | 16.50 | 0.00 | 8.3 | 91.0 | 0.7 | -1.68 | 1.18 | 0.73 | 0.80 | — | 16952 | 2240 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9Q | 6270 | 2022-12-19 | 2015-02-17 | 3.5 | 3.51 | — | 3.5 | 0.008 | 1.16 | 0.0 | 0.06 | 14.05 | 0.00 | 2.284 | 4.67 | 8.68 | 19.1 | 75.1 | 5.8 | -5.24 | 0.60 | 0.82 | 2.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 99648 | 13224 | 48 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9R | 6271 | 2022-12-19 | 2015-02-17 | 3.9 | 3.83 | — | 3.8 | 0.006 | 0.89 | 0.0 | 0.04 | 9.86 | 0.00 | 2.112 | 3.86 | 0.89 | 14.5 | 80.8 | 4.7 | -5.43 | 0.59 | 0.82 | 2.58 | 3.8 | 0.005 | 0.75 | 0.0 | 0.04 | 15.72 | 0.00 | 2.013 | 15.42 | 0.65 | 10.0 | 89.0 | 1.0 | -2.00 | 1.33 | 0.63 | 0.83 | 1.97 | 103824 | 13788 | 36 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9S | 6272 | 2022-12-13 | 2015-02-19 | 2.6 | 3.84 | — | 3.5 | 0.020 | 1.80 | 0.0 | 0.12 | 18.55 | 0.01 | 0.104 | 287.40 | 6.86 | 1.3 | 98.0 | 0.8 | 1.95 | 0.60 | 0.63 | 2.26 | 3.6 | 0.032 | 2.66 | 41.0 | 0.17 | 20.84 | 0.02 | 1.083 | 172.48 | 7.64 | 19.4 | 79.1 | 1.5 | -3.76 | 4.12 | 0.56 | 0.66 | 1.10 | 13084 | 1588 | 4 | 0 | 20 | 420 | 0 | logfile |
✔ | 5AJ3 | 2913 | 2022-12-13 | 2015-02-20 | 3.6 | 3.73 | — | 3.7 | 0.018 | 1.27 | 0.0 | 0.05 | 18.73 | 0.01 | 1.844 | 24.09 | 10.71 | 3.9 | 96.0 | 0.1 | -3.65 | 0.86 | 0.86 | 2.03 | 3.6 | 0.004 | 0.70 | 0.0 | 0.04 | 18.12 | 0.00 | 1.816 | 14.88 | 0.83 | 4.5 | 95.4 | 0.0 | 0.15 | 1.61 | 0.84 | 0.82 | 1.66 | 66363 | 4665 | 44 | 1102 | 1006 | 118 | 0 | logfile |
✔ | 3J9X | 6310 | 2022-12-14 | 2015-03-21 | 3.8 | 3.84 | — | 3.8 | 0.014 | 1.24 | 0.0 | 0.08 | 13.09 | 0.02 | 2.369 | 3.42 | 0.48 | 2.8 | 95.6 | 1.6 | -0.65 | 0.51 | 0.57 | 0.47 | 3.8 | 0.005 | 0.76 | 0.0 | 0.04 | 16.22 | 0.01 | 2.070 | 21.17 | 0.53 | 2.4 | 97.6 | 0.0 | 1.81 | 1.19 | 0.63 | 0.79 | 2.10 | 70702 | 7424 | 60 | 696 | 0 | 0 | 0 | logfile |
✔ | 4Ui9 | 2924 | 2022-12-13 | 2015-03-27 | 3.6 | 3.87 | — | 3.6 | 0.016 | 1.97 | 124.0 | 0.11 | 17.96 | 0.01 | 0.849 | 20.01 | 11.86 | 5.3 | 92.8 | 1.9 | -1.90 | 0.85 | 0.73 | 1.60 | 3.6 | 0.004 | 0.84 | 0.0 | 0.04 | 17.09 | 0.00 | 2.082 | 16.90 | 0.40 | 5.9 | 93.7 | 0.4 | 0.73 | 3.18 | 0.89 | 0.84 | 1.27 | 66453 | 8472 | 25 | 0 | 5 | 0 | 0 | logfile |
✔ | 4UiS | 2974 | 2022-12-12 | 2015-04-03 | 4.4 | 4.48 | — | 4.4 | 0.009 | 1.29 | 0.0 | 0.06 | 9.92 | 0.01 | 1.546 | 24.94 | 1.19 | 7.7 | 87.4 | 5.0 | -2.00 | 0.50 | 0.56 | — | 4.4 | 0.003 | 0.80 | 0.0 | 0.04 | 12.02 | 0.00 | 2.089 | 16.52 | 0.00 | 10.1 | 88.5 | 1.5 | -1.41 | 1.66 | 0.55 | 0.73 | — | 8518 | 791 | 5 | 0 | 458 | 0 | 0 | logfile |
✔ | 3JA7 | 6324 | 2022-12-21 | 2015-04-21 | 3.6 | 3.71 | — | 3.7 | 0.010 | 1.53 | 0.0 | 0.06 | 15.94 | 0.01 | 1.528 | 38.36 | 10.44 | 11.0 | 86.8 | 2.1 | -4.92 | 0.77 | 0.82 | 1.86 | 3.7 | 0.004 | 0.81 | 0.0 | 0.04 | 16.12 | 0.00 | 2.244 | 10.58 | 0.16 | 5.7 | 93.6 | 0.7 | -1.28 | 1.71 | 0.77 | 0.81 | 1.48 | 41280 | 5136 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 5A0Q | 2981 | 2022-12-21 | 2015-04-22 | 3.5 | 3.34 | — | 3.3 | 0.019 | 2.22 | 14.0 | 0.11 | 15.42 | 0.02 | 0.702 | 33.84 | 1.99 | 4.5 | 95.1 | 0.4 | -3.18 | 0.60 | 0.61 | 1.82 | 3.3 | 0.005 | 0.86 | 0.0 | 0.05 | 17.73 | 0.01 | 2.106 | 22.39 | 1.13 | 5.3 | 94.5 | 0.1 | -1.70 | 0.97 | 0.64 | 0.64 | 1.12 | 43448 | 5582 | 34 | 0 | 6 | 0 | 0 | logfile |
✔ | 5A1A | 2984 | 2022-12-18 | 2015-04-29 | 2.2 | 2.04 | 2.58 | 2.5 | 0.009 | 1.21 | 0.0 | 0.04 | 13.14 | 0.01 | 0.020 | 14.28 | 1.03 | 3.9 | 95.5 | 0.6 | -1.86 | 0.53 | 0.76 | 4.20 | 2.5 | 0.004 | 0.74 | 0.0 | 0.05 | 17.59 | 0.00 | 1.925 | 12.64 | 2.89 | 3.2 | 96.7 | 0.1 | -0.61 | 0.61 | 0.53 | 0.79 | 3.95 | 33696 | 4088 | 12 | 0 | 20 | 776 | 0 | logfile |
✔ | 5A22 | 6337 | 2022-12-16 | 2015-05-06 | 3.8 | 4.20 | — | 4.2 | 0.009 | 1.49 | 0.0 | 0.06 | 15.75 | 0.01 | 2.014 | 14.23 | 5.57 | 13.9 | 84.2 | 2.0 | -5.08 | 0.72 | 0.82 | 1.68 | 4.1 | 0.003 | 0.75 | 0.0 | 0.04 | 16.86 | 0.01 | 1.849 | 17.86 | 0.61 | 12.0 | 87.0 | 1.0 | -1.42 | 2.67 | 0.68 | 0.75 | 1.43 | 32187 | 2002 | 1 | 0 | 2 | 0 | 16110 | logfile |
✘ | 3JA8 | 6338 | 2022-12-18 | 2015-05-09 | 3.8 | 3.83 | — | 3.8 | 0.014 | 1.56 | 0.0 | 0.06 | 10.98 | 0.01 | 1.749 | 29.26 | 0.37 | 7.9 | 91.0 | 1.1 | -4.26 | 0.68 | 0.80 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29838 | 3786 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 5A2Q | 3019 | 2022-12-15 | 2015-05-21 | 3.9 | 4.01 | — | 3.9 | 0.008 | 1.23 | 0.0 | 0.05 | 19.81 | 0.01 | 1.830 | 13.41 | 12.93 | 4.3 | 95.5 | 0.2 | -3.44 | 0.89 | 0.88 | 1.18 | 3.9 | 0.004 | 0.72 | 0.0 | 0.04 | 18.72 | 0.00 | 1.818 | 15.77 | 0.82 | 5.1 | 94.8 | 0.1 | -0.34 | 1.60 | 0.86 | 0.82 | 1.23 | 80749 | 4931 | 45 | 1922 | 115 | 144 | 0 | logfile |
✔ | 3JAC | 6343 | 2022-12-13 | 2015-06-05 | 4.8 | 6.42 | — | 9.4 | 0.007 | 1.81 | 3.0 | 0.07 | 10.64 | 0.03 | 1.020 | 57.64 | 4.17 | 5.0 | 90.3 | 4.8 | 1.36 | 0.42 | 0.40 | — | 9.1 | 0.012 | 1.72 | 0.0 | 0.06 | 13.91 | 0.01 | 1.933 | 77.25 | 0.00 | 27.5 | 71.1 | 1.4 | -5.52 | 3.69 | 0.54 | 0.61 | — | 15741 | 1716 | 3 | 0 | 1038 | 0 | 0 | logfile |
✔ | 3JAF | 6346 | 2022-12-13 | 2015-06-08 | 3.8 | 2.26 | — | 3.8 | 0.025 | 1.93 | 0.0 | 0.10 | 10.09 | 0.01 | 2.134 | 19.02 | 0.70 | 0.6 | 99.4 | 0.0 | -0.82 | 0.69 | 0.71 | 1.52 | 3.8 | 0.003 | 1.04 | 0.0 | 0.05 | 13.94 | 0.00 | 2.222 | 18.49 | 0.28 | 2.2 | 97.8 | 0.0 | 0.52 | 1.36 | 0.72 | 0.81 | 1.69 | 13865 | 1710 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 3JAD | 6344 | 2022-12-12 | 2015-06-08 | 3.9 | 2.16 | — | 3.8 | 0.008 | 1.32 | 0.0 | 0.06 | 8.46 | 0.00 | 2.250 | 17.07 | 0.43 | 2.7 | 97.3 | 0.0 | -2.13 | 0.68 | 0.72 | 0.33 | 2.6 | 0.004 | 0.80 | 0.0 | 0.04 | 12.88 | 0.00 | 2.172 | 19.50 | 0.26 | 5.1 | 94.9 | 0.0 | -0.14 | 1.24 | 0.70 | 0.78 | 0.46 | 12705 | 1685 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 3JAE | 6345 | 2022-12-13 | 2015-06-08 | 3.9 | 2.88 | — | 3.5 | 0.006 | 1.25 | 0.0 | 0.05 | 9.25 | 0.01 | 2.202 | 13.89 | 0.00 | 0.9 | 99.1 | 0.0 | -1.69 | 0.70 | 0.74 | 1.87 | 3.2 | 0.003 | 0.85 | 0.0 | 0.04 | 13.60 | 0.00 | 2.000 | 16.30 | 0.08 | 2.9 | 97.1 | 0.0 | 0.14 | 1.48 | 0.72 | 0.82 | 1.52 | 12825 | 1690 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 3JAL | 6350 | 2022-12-21 | 2015-06-16 | 3.5 | 3.70 | — | 3.6 | 0.009 | 1.46 | 5.0 | 0.08 | 15.76 | 0.01 | 1.948 | 1.69 | 1.21 | 2.9 | 97.0 | 0.1 | 0.16 | 0.68 | 0.86 | 2.81 | 3.6 | 0.004 | 0.65 | 0.0 | 0.04 | 17.02 | 0.00 | 1.900 | 7.75 | 0.26 | 2.3 | 97.7 | 0.0 | 0.69 | 0.79 | 0.66 | 0.87 | 2.55 | 43012 | 5428 | 26 | 0 | 18 | 0 | 0 | logfile |