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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3J89 | 6123 | 2022-04-04 | 2014-10-07 | 3.6 | 2.21 | — | 3.5 | 0.022 | 1.64 | 0.0 | 0.10 | 11.97 | 0.01 | 2.578 | 2.11 | 0.00 | 3.5 | 96.5 | 0.0 | -0.96 | 0.83 | 0.81 | 0.77 | 3.2 | 0.004 | 0.56 | 0.0 | 0.03 | 20.77 | 0.01 | 2.082 | 10.42 | 2.01 | 1.4 | 98.6 | 0.0 | 2.48 | 1.98 | 0.81 | 0.79 | 0.26 | 9025 | 551 | 19 | 0 | 0 | 0 | 4598 | logfile |
✘ | 3J8A | 6124 | 2022-04-05 | 2014-10-08 | 3.7 | 3.90 | — | 3.8 | 0.006 | 1.28 | 0.0 | 0.05 | 14.94 | 0.01 | 2.145 | 19.64 | 6.28 | 11.2 | 87.4 | 1.4 | -5.31 | 0.73 | 0.80 | 2.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15800 | 1835 | 12 | 0 | 280 | 0 | 0 | logfile |
✔ | 3J8H | 2807 | 2022-04-05 | 2014-10-26 | 3.8 | 3.95 | — | 3.8 | 0.006 | 1.31 | 4.0 | 0.05 | 10.89 | 0.01 | 1.488 | 33.45 | 2.47 | 5.3 | 92.8 | 1.9 | -2.06 | 0.65 | 0.64 | 1.52 | 3.8 | 0.004 | 0.81 | 0.0 | 0.04 | 14.06 | 0.00 | 2.021 | 18.13 | 0.62 | 5.7 | 93.9 | 0.4 | 0.00 | 2.10 | 0.73 | 0.76 | 1.04 | 111160 | 12796 | 12 | 0 | 2276 | 0 | 0 | logfile |
✔ | 3J8i | 6179 | 2022-04-05 | 2014-11-06 | 4.7 | 4.79 | — | 4.7 | 0.018 | 1.67 | 0.0 | 0.11 | 19.47 | 0.01 | 2.125 | 76.17 | 14.53 | 6.4 | 87.5 | 6.1 | -1.59 | 0.66 | 0.76 | — | 4.7 | 0.003 | 0.90 | 0.0 | 0.04 | 14.12 | 0.00 | 2.079 | 17.80 | 0.00 | 11.3 | 88.2 | 0.5 | -2.07 | 1.75 | 0.65 | 0.71 | — | 14800 | 1875 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 3J92 | 2832 | 2022-04-11 | 2014-12-02 | 3.6 | 3.74 | — | 3.7 | 0.010 | 1.59 | 52.0 | 0.11 | 21.53 | 0.01 | 1.186 | 15.75 | 18.87 | 11.1 | 85.7 | 3.2 | -3.22 | 0.79 | 0.74 | 0.42 | 3.7 | 0.008 | 0.86 | 0.0 | 0.04 | 18.89 | 0.01 | 1.077 | 16.23 | 0.29 | 7.5 | 91.9 | 0.6 | -1.59 | 1.00 | 0.86 | 0.86 | 1.65 | 146386 | 7246 | 65 | 4013 | 593 | 0 | 0 | logfile |
✔ | 3J94 | 6204 | 2022-04-06 | 2014-12-05 | 4.2 | 2.69 | — | 3.1 | 0.009 | 1.96 | 0.0 | 0.07 | 15.84 | 0.01 | 1.261 | 31.36 | 5.87 | 5.0 | 93.0 | 2.0 | 2.31 | 0.83 | 0.77 | — | 2.7 | 0.004 | 0.82 | 0.0 | 0.04 | 13.92 | 0.01 | 1.560 | 18.91 | 0.00 | 5.5 | 94.0 | 0.5 | 0.45 | 2.62 | 0.85 | 0.80 | — | 21509 | 2895 | 12 | 0 | 11 | 0 | 0 | logfile |
✔ | 3J9C | 6224 | 2022-04-06 | 2014-12-25 | 2.9 | 3.02 | — | 3.1 | 0.005 | 1.11 | 0.0 | 0.05 | 14.41 | 0.00 | 2.277 | 7.02 | 6.13 | 4.8 | 95.2 | 0.0 | -0.81 | 0.74 | 0.87 | 2.67 | 3.0 | 0.003 | 0.59 | 0.0 | 0.04 | 16.40 | 0.00 | 2.184 | 7.85 | 3.09 | 2.6 | 97.4 | 0.0 | 0.29 | 1.52 | 0.76 | 0.86 | 3.08 | 23296 | 2961 | 7 | 0 | 14 | 0 | 0 | logfile |
✔ | 3J9D | 6239 | 2022-04-04 | 2015-01-09 | 3.3 | 2.70 | — | 3.4 | 0.027 | 2.04 | 0.0 | 0.08 | 20.57 | 0.01 | 2.034 | 23.66 | 24.92 | 8.2 | 89.6 | 2.2 | -3.64 | 0.81 | 0.89 | 2.90 | 3.3 | 0.022 | 0.86 | 0.0 | 0.04 | 17.39 | 0.00 | 2.179 | 16.18 | 0.30 | 7.0 | 92.2 | 0.8 | -1.73 | 2.37 | 0.76 | 0.84 | 3.01 | 6086 | 746 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 3J9E | 6240 | 2022-04-04 | 2015-01-10 | 3.3 | 2.66 | — | 3.3 | 0.032 | 3.28 | 0.0 | 0.09 | 21.31 | 0.02 | 1.223 | 20.69 | 24.26 | 9.8 | 87.3 | 2.9 | -3.41 | 0.77 | 0.88 | 3.26 | 3.3 | 0.003 | 0.83 | 0.0 | 0.04 | 17.71 | 0.00 | 2.229 | 9.48 | 0.46 | 7.8 | 91.3 | 1.0 | 0.97 | 1.23 | 0.74 | 0.85 | 3.56 | 4098 | 520 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5AEY | 2850 | 2022-04-05 | 2015-01-12 | 4.3 | 4.01 | — | 4.0 | 0.011 | 1.71 | 35.0 | 0.11 | 21.88 | 0.01 | 2.197 | 7.01 | 18.45 | 8.7 | 88.5 | 2.8 | -3.27 | 0.64 | 0.81 | — | 3.9 | 0.003 | 0.76 | 0.0 | 0.04 | 15.48 | 0.00 | 2.110 | 13.31 | 0.07 | 9.1 | 90.6 | 0.3 | -1.26 | 2.83 | 0.63 | 0.76 | — | 12675 | 1590 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 3J9G | 2699 | 2022-04-07 | 2015-01-16 | 3.5 | 2.75 | — | 3.5 | 0.011 | 1.34 | 0.0 | 0.06 | 10.86 | 0.01 | 2.365 | 1.99 | 0.00 | 3.6 | 95.7 | 0.7 | -0.80 | 0.40 | 0.65 | 0.85 | 3.1 | 0.006 | 0.82 | 1.0 | 0.04 | 16.41 | 0.01 | 1.832 | 12.38 | 0.20 | 2.7 | 97.2 | 0.2 | 0.45 | 1.14 | 0.42 | 0.80 | 2.14 | 132930 | 16710 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9J | 5778 | 2022-04-06 | 2015-02-02 | 3.275 | 3.52 | 3.19 | 3.6 | 0.015 | 1.08 | 0.0 | 0.09 | 9.35 | 0.01 | 2.266 | 2.70 | 0.00 | 3.3 | 94.5 | 2.2 | -0.65 | 0.53 | 0.57 | 2.57 | 3.5 | 0.003 | 0.65 | 0.0 | 0.04 | 15.80 | 0.00 | 1.905 | 14.19 | 0.17 | 6.7 | 92.7 | 0.6 | 2.30 | 3.87 | 0.59 | 0.76 | 1.97 | 21068 | 1260 | 4 | 0 | 0 | 0 | 10624 | logfile |
✔ | 3J9i | 5623 | 2022-04-09 | 2015-02-02 | 3.3 | 3.34 | 2.96 | 3.2 | 0.034 | 3.61 | 574.0 | 0.23 | 18.10 | 0.03 | 1.922 | 5.67 | 9.27 | 8.0 | 90.1 | 1.9 | -3.61 | 0.80 | 0.79 | 3.08 | 3.2 | 0.007 | 0.89 | 0.0 | 0.05 | 17.62 | 0.00 | 2.132 | 14.08 | 1.20 | 3.3 | 96.4 | 0.3 | 0.06 | 0.84 | 0.87 | 0.89 | 2.61 | 46228 | 5978 | 28 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9K | 2870 | 2022-04-07 | 2015-02-04 | 4.1 | 4.22 | — | 4.1 | 0.022 | 2.13 | 128.0 | 0.13 | 20.83 | 0.01 | 1.058 | 99.51 | 29.75 | 12.8 | 86.2 | 1.0 | -3.18 | 0.68 | 0.68 | — | 4.1 | 0.003 | 0.78 | 0.0 | 0.04 | 14.02 | 0.00 | 2.148 | 16.48 | 0.14 | 5.6 | 94.2 | 0.2 | -1.12 | 1.16 | 0.69 | 0.70 | — | 126512 | 10352 | 48 | 0 | 8304 | 0 | 0 | logfile |
✔ | 3J9L | 2871 | 2022-04-05 | 2015-02-04 | 4.0 | 4.10 | — | 4.0 | 0.022 | 1.96 | 105.0 | 0.12 | 19.47 | 0.01 | 1.058 | 81.48 | 27.30 | 10.5 | 88.6 | 0.9 | -4.09 | 0.66 | 0.68 | — | 4.0 | 0.046 | 3.09 | 53.0 | 0.12 | 19.38 | 0.02 | 1.821 | 98.71 | 4.04 | 40.2 | 57.9 | 1.9 | -7.58 | 2.86 | 0.70 | 0.77 | — | 112951 | 8688 | 31 | 0 | 8320 | 0 | 0 | logfile |
✔ | 3J9M | 2876 | 2022-04-16 | 2015-02-08 | 3.5 | 3.59 | 3.50 | 3.5 | 0.007 | 1.35 | 38.0 | 0.09 | 19.29 | 0.01 | 1.242 | 5.66 | 9.06 | 8.2 | 89.4 | 2.4 | -1.72 | 0.66 | 0.76 | 1.82 | 3.5 | 0.006 | 0.82 | 3.0 | 0.04 | 18.30 | 0.01 | 1.706 | 13.60 | 0.37 | 6.6 | 92.8 | 0.6 | 0.04 | 0.88 | 0.76 | 0.83 | 1.45 | 158384 | 12902 | 97 | 2454 | 309 | 0 | 0 | logfile |
✔ | 3J9P | 6267 | 2022-04-06 | 2015-02-14 | 4.24 | 2.59 | — | 4.1 | 0.009 | 1.84 | 4.0 | 0.07 | 17.68 | 0.01 | 2.113 | 26.26 | 4.64 | 10.2 | 88.2 | 1.6 | -3.58 | 0.73 | 0.78 | — | 4.2 | 0.003 | 1.08 | 0.0 | 0.04 | 13.94 | 0.00 | 2.147 | 16.50 | 0.00 | 8.3 | 91.0 | 0.7 | -1.68 | 1.18 | 0.73 | 0.80 | — | 16952 | 2240 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9Q | 6270 | 2022-04-09 | 2015-02-17 | 3.5 | 3.51 | — | 3.5 | 0.008 | 1.16 | 0.0 | 0.06 | 14.05 | 0.00 | 2.284 | 4.67 | 8.68 | 19.1 | 75.1 | 5.8 | -5.24 | 0.60 | 0.82 | 2.71 | 3.5 | 0.006 | 0.91 | 0.0 | 0.05 | 16.24 | 0.01 | 1.959 | 16.64 | 1.07 | 12.7 | 85.8 | 1.6 | -2.08 | 0.90 | 0.61 | 0.83 | 2.64 | 99648 | 13224 | 48 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9R | 6271 | 2022-04-09 | 2015-02-17 | 3.9 | 3.83 | — | 3.8 | 0.006 | 0.89 | 0.0 | 0.04 | 9.86 | 0.00 | 2.112 | 3.86 | 0.89 | 14.5 | 80.8 | 4.7 | -5.43 | 0.59 | 0.82 | 2.58 | 3.8 | 0.006 | 0.79 | 0.0 | 0.04 | 15.84 | 0.01 | 2.006 | 15.57 | 0.69 | 9.6 | 89.5 | 1.0 | -2.01 | 1.33 | 0.63 | 0.83 | 1.86 | 103824 | 13788 | 36 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9S | 6272 | 2022-04-05 | 2015-02-19 | 2.6 | 3.83 | — | 3.5 | 0.020 | 1.80 | 0.0 | 0.12 | 18.55 | 0.01 | 0.216 | 24.94 | 6.86 | 1.3 | 98.0 | 0.8 | 1.97 | 0.68 | 0.76 | 3.15 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 17.34 | 0.00 | 1.152 | 8.77 | 1.52 | 1.9 | 98.1 | 0.0 | 1.29 | 1.91 | 0.70 | 0.89 | 3.42 | 9813 | 1191 | 3 | 0 | 15 | 315 | 0 | logfile |