Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5LiJ	4054	2023-09-27	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.005	1.18	0.0	0.04	10.31	0.00	2.148	15.12	0.00	32.0	68.0	0.0	-5.66	1.48	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	5LJ3	4055	2023-09-30	2016-07-17	3.8	3.92	—	3.8	0.007	1.46	40.0	0.09	17.30	0.01	1.631	5.99	8.54	8.1	90.7	1.2	-1.69	0.70	0.81	1.37	3.8	0.003	0.72	0.0	0.04	17.06	0.00	2.050	14.82	0.42	4.8	95.1	0.2	0.33	0.87	0.69	0.78	1.35	63161	7305	45	458	142	0	0	logfile
✔	5LKi	4068	2023-09-28	2016-07-22	3.46	3.72	—	3.5	0.013	1.24	5.0	0.06	10.71	0.01	0.579	39.51	0.18	7.7	91.7	0.6	-4.39	0.65	0.79	2.37	3.5	0.004	0.83	0.0	0.04	15.10	0.00	2.088	15.46	0.70	7.1	92.5	0.4	0.24	0.81	0.63	0.80	1.65	55415	7135	5	0	0	0	0	logfile
✔	5LL6	4071	2023-09-28	2016-07-26	3.9	4.01	—	3.9	0.012	1.50	6.0	0.11	19.04	0.01	0.924	4.96	2.53	10.6	85.7	3.7	-3.86	0.69	0.82	1.20	3.9	0.009	1.02	0.0	0.05	19.15	0.01	1.728	25.33	1.83	13.9	85.1	0.9	-2.96	0.90	0.70	0.81	1.06	55262	3429	20	1325	5	0	0	logfile
✔	5LMU	4080	2023-09-28	2016-08-01	4.0	4.12	4.00	4.0	0.008	1.44	43.0	0.12	21.34	0.02	1.289	21.15	25.30	12.0	84.2	3.8	-2.57	0.73	0.78	—	4.0	0.006	0.86	0.0	0.04	17.76	0.01	1.776	29.46	1.59	8.7	90.7	0.6	-1.67	0.88	0.76	0.84	—	55195	2550	29	1612	82	0	0	logfile
✔	5LMV	4083	2023-09-29	2016-08-01	4.9	6.86	6.64	6.7	0.008	1.34	34.0	0.11	20.14	0.01	0.977	14.22	15.18	9.6	87.9	2.5	-1.98	0.70	0.58	—	6.7	0.003	0.72	0.0	0.04	16.73	0.01	2.048	27.68	0.00	6.8	92.7	0.5	-1.55	2.19	0.77	0.75	—	59470	3124	30	1612	4	0	0	logfile
✘	5LMR	4077	2023-09-28	2016-08-01	4.45	4.71	4.60	4.4	0.008	1.39	20.0	0.12	20.52	0.02	1.426	17.92	16.73	8.7	88.5	2.8	-2.16	0.79	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	55662	2628	29	1609	4	0	0	logfile
✔	5LMo	4074	2023-09-28	2016-08-01	4.3	4.71	4.30	4.3	0.009	1.47	50.0	0.12	20.86	0.01	0.865	18.49	20.40	10.6	85.8	3.6	-2.76	0.80	0.69	—	4.3	0.005	0.80	0.0	0.04	16.93	0.01	0.957	39.06	0.00	9.6	89.9	0.5	-1.93	2.18	0.88	0.84	—	54110	2622	29	1533	110	0	0	logfile
✔	5LMQ	4076	2023-09-28	2016-08-01	4.2	4.46	4.25	4.2	0.009	1.44	30.0	0.12	20.84	0.02	1.387	19.43	21.46	10.5	86.1	3.4	-2.56	0.80	0.76	—	4.2	0.003	0.72	0.0	0.03	16.43	0.01	1.903	23.92	0.05	7.4	92.2	0.5	-1.12	1.62	0.84	0.84	—	55841	2635	29	1612	66	0	0	logfile
✔	5LMT	4079	2023-09-28	2016-08-01	4.15	4.33	4.20	4.2	0.008	1.43	21.0	0.12	20.76	0.02	1.290	18.78	22.35	11.9	84.8	3.3	-2.73	0.77	0.76	—	4.1	0.005	0.79	0.0	0.04	16.67	0.01	1.811	29.47	0.00	9.0	90.6	0.4	-1.66	0.91	0.80	0.83	—	55776	2622	31	1612	88	0	0	logfile
✔	5LMN	4073	2023-09-28	2016-08-01	3.55	3.68	3.61	3.6	0.007	1.42	35.0	0.12	20.67	0.01	0.925	19.85	21.59	10.4	86.7	2.8	-2.30	0.79	0.88	1.35	3.6	0.006	0.76	0.0	0.04	17.16	0.01	1.813	21.10	1.18	7.4	92.4	0.2	-1.24	1.56	0.77	0.84	1.47	54149	2623	27	1534	129	0	0	logfile
✔	5SY1	8315	2023-09-30	2016-08-10	3.9	3.66	3.96	3.8	0.008	1.02	0.0	0.05	10.05	0.01	1.524	5.60	0.08	7.1	92.7	0.1	-5.23	0.51	0.62	1.65	3.7	0.003	0.75	0.0	0.04	15.30	0.00	2.152	10.11	0.24	5.4	94.6	0.0	0.02	0.93	0.62	0.78	1.19	11462	1458	8	0	10	0	0	logfile
✘	5GUP	9539	2023-09-28	2016-08-30	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	109982	13895	107	0	77	0	0	logfile
✔	5LY6	4118	2023-09-27	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.003	0.77	0.0	0.04	13.91	0.00	2.223	14.60	0.00	8.3	91.5	0.2	-2.31	3.59	0.40	0.76	—	3725	471	1	0	0	0	0	logfile
✔	5H1C	9567	2023-09-28	2016-10-08	4.5	4.34	—	3.8	0.009	1.30	0.0	0.05	14.98	0.00	1.454	41.46	4.44	4.9	92.8	2.3	-2.37	0.52	0.66	—	3.8	0.003	0.67	0.0	0.04	15.18	0.00	1.869	13.78	0.00	4.6	94.5	1.0	0.60	1.56	0.58	0.82	—	7602	933	8	18	6	0	0	logfile
✔	5H1B	9566	2023-09-28	2016-10-08	4.4	3.94	—	3.6	0.010	1.41	0.0	0.06	13.44	0.01	1.503	54.25	5.67	6.2	91.1	2.6	-1.51	0.59	0.70	—	3.6	0.003	0.66	0.0	0.04	13.82	0.00	1.986	15.03	0.00	3.2	95.9	0.9	0.60	2.70	0.65	0.81	—	7359	924	7	9	6	0	0	logfile
✔	5M5H	4155	2023-09-27	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.89	0.0	0.05	12.67	0.01	2.275	23.84	0.00	8.7	91.3	0.0	-1.45	2.20	0.15	0.14	—	1086	132	1	0	0	0	0	logfile
✔	5M6S	3451	2023-09-27	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.6	0.003	0.63	0.0	0.03	18.81	0.00	1.995	10.68	0.00	6.2	93.8	0.0	2.64	2.46	0.03	0.08	—	1593	98	1	0	0	0	793	logfile
✔	5TTP	8467	2023-09-28	2016-11-04	4.8	4.88	—	4.5	0.006	1.36	0.0	0.06	11.70	0.01	2.038	24.92	0.00	14.1	85.2	0.7	-5.87	0.61	0.60	—	4.6	0.002	0.77	0.0	0.04	5.16	0.00	2.264	6.32	0.00	13.8	85.9	0.4	0.24	1.81	0.66	0.69	—	5616	1138	2	0	0	0	0	logfile
✔	5TV4	8469	2023-09-28	2016-11-08	4.2	4.13	—	4.0	0.008	1.26	0.0	0.06	12.84	0.01	1.511	46.46	0.48	13.1	86.2	0.7	-5.82	0.48	0.57	—	4.0	0.003	0.76	0.0	0.04	10.72	0.00	2.171	9.49	0.00	6.3	93.7	0.0	-0.05	1.54	0.55	0.67	—	6548	1140	5	0	17	0	0	logfile

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