Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J94	6204	2022-07-05	2014-12-05	4.2	2.69	—	3.1	0.009	1.96	0.0	0.07	15.84	0.01	1.261	31.36	5.87	5.0	93.0	2.0	2.31	0.83	0.77	—	2.7	0.004	0.82	0.0	0.04	13.92	0.01	1.560	18.95	0.00	5.5	94.0	0.5	0.45	2.62	0.85	0.80	—	21509	2895	12	0	11	0	0	logfile
✔	3J9C	6224	2022-07-05	2014-12-25	2.9	3.02	—	3.1	0.005	1.11	0.0	0.05	14.41	0.00	2.277	7.02	6.13	4.8	95.2	0.0	-0.81	0.74	0.87	2.67	3.0	0.003	0.59	0.0	0.04	16.40	0.00	2.184	8.15	3.09	2.6	97.4	0.0	0.29	1.52	0.76	0.86	3.08	23296	2961	7	0	14	0	0	logfile
✔	3J9D	6239	2022-07-03	2015-01-09	3.3	2.70	—	3.4	0.027	2.04	0.0	0.08	20.57	0.01	2.034	23.82	24.92	8.2	89.6	2.2	-3.64	0.81	0.89	2.90	3.3	0.022	0.86	0.0	0.04	17.39	0.00	2.179	16.27	0.30	7.0	92.2	0.8	-1.73	2.37	0.76	0.84	3.01	6086	746	1	0	1	0	0	logfile
✔	3J9E	6240	2022-07-03	2015-01-10	3.3	2.66	—	3.3	0.032	3.28	0.0	0.09	21.31	0.02	1.223	21.30	24.26	9.8	87.3	2.9	-3.41	0.77	0.88	3.26	3.3	0.003	0.83	0.0	0.04	17.71	0.00	2.229	9.85	0.46	7.8	91.3	1.0	0.97	1.23	0.74	0.85	3.56	4098	520	1	0	0	0	0	logfile
✔	5AEY	2850	2022-07-03	2015-01-12	4.3	4.01	—	4.0	0.011	1.71	35.0	0.11	21.88	0.01	2.197	7.21	18.45	8.7	88.5	2.8	-3.27	0.64	0.81	—	3.9	0.003	0.76	0.0	0.04	15.48	0.00	2.110	13.31	0.07	9.1	90.6	0.3	-1.26	2.83	0.63	0.76	—	12675	1590	10	0	5	0	0	logfile
✔	3J9G	2699	2022-07-06	2015-01-16	3.5	2.75	—	3.5	0.011	1.34	0.0	0.06	10.86	0.01	2.365	2.17	0.00	3.6	95.7	0.7	-0.80	0.40	0.65	0.85	3.1	0.004	0.74	0.0	0.04	16.40	0.01	2.097	10.79	0.58	2.5	97.4	0.1	0.64	1.17	0.42	0.80	2.01	132930	16710	60	0	0	0	0	logfile
✔	3J9i	5623	2022-07-07	2015-02-02	3.3	3.34	2.96	3.2	0.034	3.61	574.0	0.23	18.10	0.03	1.922	5.67	9.27	8.0	90.1	1.9	-3.61	0.80	0.79	3.08	3.2	0.007	0.89	0.0	0.05	17.62	0.00	2.132	14.08	1.20	3.3	96.4	0.3	0.06	0.84	0.87	0.89	2.61	46228	5978	28	0	0	0	0	logfile
✔	3J9J	5778	2022-07-04	2015-02-02	3.275	3.52	3.19	3.6	0.015	1.08	0.0	0.09	9.35	0.01	2.266	2.70	0.00	3.3	94.5	2.2	-0.65	0.53	0.57	2.57	3.5	0.003	0.65	0.0	0.04	15.80	0.00	1.905	14.19	0.17	6.7	92.7	0.6	2.30	3.87	0.59	0.76	1.97	21068	1260	4	0	0	0	10624	logfile
✔	3J9L	2871	2022-07-03	2015-02-04	4.0	4.10	—	4.0	0.022	1.96	105.0	0.12	19.47	0.01	1.058	81.48	27.30	10.5	88.6	0.9	-4.09	0.66	0.68	—	4.0	0.044	3.04	47.0	0.12	19.31	0.02	1.806	99.15	3.02	41.1	57.3	1.6	-7.66	2.86	0.73	0.82	—	112951	8688	31	0	8320	0	0	logfile
✔	3J9K	2870	2022-07-05	2015-02-04	4.1	4.22	—	4.1	0.022	2.13	128.0	0.13	20.83	0.01	1.058	99.65	29.75	12.8	86.2	1.0	-3.18	0.68	0.68	—	4.1	0.003	0.78	0.0	0.04	13.93	0.00	2.137	16.74	0.00	5.1	94.8	0.2	-1.17	1.16	0.70	0.70	—	126512	10352	48	0	8304	0	0	logfile
✔	3J9M	2876	2022-07-11	2015-02-08	3.5	3.59	3.50	3.5	0.007	1.35	38.0	0.09	19.29	0.01	1.242	5.74	9.06	8.2	89.4	2.4	-1.72	0.66	0.76	1.82	3.5	0.008	0.84	2.0	0.04	18.35	0.01	1.613	14.70	0.27	6.8	92.6	0.6	-0.01	0.86	0.76	0.83	1.57	158384	12902	97	2454	309	0	0	logfile
✔	3J9P	6267	2022-07-04	2015-02-14	4.24	2.59	—	4.1	0.009	1.84	4.0	0.07	17.68	0.01	2.113	26.59	4.64	10.2	88.2	1.6	-3.58	0.73	0.78	—	4.2	0.003	1.08	0.0	0.04	13.94	0.00	2.147	16.50	0.00	8.3	91.0	0.7	-1.68	1.18	0.73	0.80	—	16952	2240	4	0	0	0	0	logfile
✔	3J9Q	6270	2022-07-06	2015-02-17	3.5	3.51	—	3.5	0.008	1.16	0.0	0.06	14.05	0.00	2.284	4.67	8.68	19.1	75.1	5.8	-5.24	0.60	0.82	2.71	3.5	0.006	0.91	0.0	0.05	16.24	0.01	1.959	16.68	1.07	12.7	85.8	1.6	-2.08	0.90	0.61	0.83	2.64	99648	13224	48	0	0	0	0	logfile
✔	3J9R	6271	2022-07-07	2015-02-17	3.9	3.83	—	3.8	0.006	0.89	0.0	0.04	9.86	0.00	2.112	3.86	0.89	14.5	80.8	4.7	-5.43	0.59	0.82	2.58	3.8	0.006	0.79	0.0	0.04	15.84	0.01	2.006	15.58	0.69	9.6	89.5	1.0	-2.01	1.33	0.63	0.83	1.86	103824	13788	36	0	0	0	0	logfile
✔	3J9S	6272	2022-07-03	2015-02-19	2.6	3.83	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.216	25.26	6.86	1.3	98.0	0.8	1.97	0.68	0.76	3.15	3.5	0.003	0.64	0.0	0.04	17.34	0.00	1.152	8.77	1.52	1.9	98.1	0.0	1.29	1.91	0.70	0.89	3.42	9813	1191	3	0	15	315	0	logfile
✘	5AJ3	2913	2022-07-04	2015-02-20	3.6	3.73	—	3.7	0.014	1.23	0.0	0.05	17.85	0.01	1.305	24.09	10.71	3.9	96.0	0.1	-3.65	0.86	0.86	2.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	66363	4665	44	1102	1006	118	0	logfile
✔	3J9W	6306	2022-07-06	2015-03-16	3.9	3.93	—	3.8	0.010	1.50	0.0	0.03	15.63	0.02	1.433	8.88	0.26	6.0	92.0	2.0	-1.66	0.74	0.72	0.72	3.8	0.004	0.72	0.0	0.04	17.59	0.01	2.027	17.99	1.13	7.6	91.7	0.7	-0.47	1.35	0.80	0.85	1.20	135425	5661	54	4675	0	0	0	logfile
✔	4UFT	2867	2022-07-04	2015-03-19	4.3	4.24	—	4.2	0.005	0.95	0.0	0.05	11.26	0.00	1.169	8.69	0.31	13.2	83.9	3.0	-4.63	0.54	0.70	—	4.2	0.003	0.75	0.0	0.04	13.26	0.00	2.058	10.89	0.08	7.7	91.3	1.0	-2.58	1.91	0.58	0.77	—	119847	14703	78	234	0	0	0	logfile
✔	3J9X	6310	2022-07-04	2015-03-21	3.8	3.84	—	3.8	0.014	1.24	0.0	0.08	13.09	0.02	2.369	3.42	0.48	2.8	95.6	1.6	-0.65	0.51	0.57	0.47	3.8	0.005	0.78	0.0	0.04	16.13	0.01	2.080	20.92	0.59	2.5	97.5	0.0	1.88	1.09	0.62	0.77	1.97	70702	7424	60	696	0	0	0	logfile
✘	3J9Y	6311	2022-07-09	2015-03-23	3.9	3.83	—	3.9	0.005	0.83	0.0	0.04	15.03	0.00	0.974	10.35	3.21	10.9	85.6	3.4	-3.83	0.76	0.77	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	148915	6657	58	4645	0	0	0	logfile

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