Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J9J	5778	2022-12-14	2015-02-02	3.275	3.52	3.19	3.6	0.015	1.08	0.0	0.09	9.35	0.01	2.266	2.70	0.00	3.3	94.5	2.2	-0.65	0.53	0.57	2.57	3.5	0.003	0.65	0.0	0.04	15.80	0.00	1.905	14.19	0.17	6.7	92.7	0.6	2.30	3.87	0.59	0.76	1.97	21068	1260	4	0	0	0	10624	logfile
✔	3J9P	6267	2022-12-13	2015-02-14	4.24	2.59	—	4.1	0.009	1.84	4.0	0.07	17.68	0.01	2.113	26.59	4.64	10.2	88.2	1.6	-3.58	0.73	0.78	—	4.2	0.003	1.08	0.0	0.04	13.94	0.00	2.147	16.50	0.00	8.3	91.0	0.7	-1.68	1.18	0.73	0.80	—	16952	2240	4	0	0	0	0	logfile
✔	3J9Q	6270	2022-12-19	2015-02-17	3.5	3.51	—	3.5	0.008	1.16	0.0	0.06	14.05	0.00	2.284	4.67	8.68	19.1	75.1	5.8	-5.24	0.60	0.82	2.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	99648	13224	48	0	0	0	0	logfile
✔	3J9R	6271	2022-12-19	2015-02-17	3.9	3.83	—	3.8	0.006	0.89	0.0	0.04	9.86	0.00	2.112	3.86	0.89	14.5	80.8	4.7	-5.43	0.59	0.82	2.58	3.8	0.005	0.75	0.0	0.04	15.72	0.00	2.013	15.42	0.65	10.0	89.0	1.0	-2.00	1.33	0.63	0.83	1.97	103824	13788	36	0	0	0	0	logfile
✔	3J9S	6272	2022-12-13	2015-02-19	2.6	3.84	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.104	287.40	6.86	1.3	98.0	0.8	1.95	0.60	0.63	2.26	3.6	0.032	2.66	41.0	0.17	20.84	0.02	1.083	172.48	7.64	19.4	79.1	1.5	-3.76	4.12	0.56	0.66	1.10	13084	1588	4	0	20	420	0	logfile
✔	5AJ3	2913	2022-12-13	2015-02-20	3.6	3.73	—	3.7	0.018	1.27	0.0	0.05	18.73	0.01	1.844	24.09	10.71	3.9	96.0	0.1	-3.65	0.86	0.86	2.03	3.6	0.004	0.70	0.0	0.04	18.12	0.00	1.816	14.88	0.83	4.5	95.4	0.0	0.15	1.61	0.84	0.82	1.66	66363	4665	44	1102	1006	118	0	logfile
✔	3J9X	6310	2022-12-14	2015-03-21	3.8	3.84	—	3.8	0.014	1.24	0.0	0.08	13.09	0.02	2.369	3.42	0.48	2.8	95.6	1.6	-0.65	0.51	0.57	0.47	3.8	0.005	0.76	0.0	0.04	16.22	0.01	2.070	21.17	0.53	2.4	97.6	0.0	1.81	1.19	0.63	0.79	2.10	70702	7424	60	696	0	0	0	logfile
✔	4Ui9	2924	2022-12-13	2015-03-27	3.6	3.87	—	3.6	0.016	1.97	124.0	0.11	17.96	0.01	0.849	20.01	11.86	5.3	92.8	1.9	-1.90	0.85	0.73	1.60	3.6	0.004	0.84	0.0	0.04	17.09	0.00	2.082	16.90	0.40	5.9	93.7	0.4	0.73	3.18	0.89	0.84	1.27	66453	8472	25	0	5	0	0	logfile
✔	4UiS	2974	2022-12-12	2015-04-03	4.4	4.48	—	4.4	0.009	1.29	0.0	0.06	9.92	0.01	1.546	24.94	1.19	7.7	87.4	5.0	-2.00	0.50	0.56	—	4.4	0.003	0.80	0.0	0.04	12.02	0.00	2.089	16.52	0.00	10.1	88.5	1.5	-1.41	1.66	0.55	0.73	—	8518	791	5	0	458	0	0	logfile
✔	3JA7	6324	2022-12-21	2015-04-21	3.6	3.71	—	3.7	0.010	1.53	0.0	0.06	15.94	0.01	1.528	38.36	10.44	11.0	86.8	2.1	-4.92	0.77	0.82	1.86	3.7	0.004	0.81	0.0	0.04	16.12	0.00	2.244	10.58	0.16	5.7	93.6	0.7	-1.28	1.71	0.77	0.81	1.48	41280	5136	12	0	0	0	0	logfile
✔	5A0Q	2981	2022-12-21	2015-04-22	3.5	3.34	—	3.3	0.019	2.22	14.0	0.11	15.42	0.02	0.702	33.84	1.99	4.5	95.1	0.4	-3.18	0.60	0.61	1.82	3.3	0.005	0.86	0.0	0.05	17.73	0.01	2.106	22.39	1.13	5.3	94.5	0.1	-1.70	0.97	0.64	0.64	1.12	43448	5582	34	0	6	0	0	logfile
✔	5A1A	2984	2022-12-18	2015-04-29	2.2	2.04	2.58	2.5	0.009	1.21	0.0	0.04	13.14	0.01	0.020	14.28	1.03	3.9	95.5	0.6	-1.86	0.53	0.76	4.20	2.5	0.004	0.74	0.0	0.05	17.59	0.00	1.925	12.64	2.89	3.2	96.7	0.1	-0.61	0.61	0.53	0.79	3.95	33696	4088	12	0	20	776	0	logfile
✔	5A22	6337	2022-12-16	2015-05-06	3.8	4.20	—	4.2	0.009	1.49	0.0	0.06	15.75	0.01	2.014	14.23	5.57	13.9	84.2	2.0	-5.08	0.72	0.82	1.68	4.1	0.003	0.75	0.0	0.04	16.86	0.01	1.849	17.86	0.61	12.0	87.0	1.0	-1.42	2.67	0.68	0.75	1.43	32187	2002	1	0	2	0	16110	logfile
✘	3JA8	6338	2022-12-18	2015-05-09	3.8	3.83	—	3.8	0.014	1.56	0.0	0.06	10.98	0.01	1.749	29.26	0.37	7.9	91.0	1.1	-4.26	0.68	0.80	2.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29838	3786	12	0	6	0	0	logfile
✔	5A2Q	3019	2022-12-15	2015-05-21	3.9	4.01	—	3.9	0.008	1.23	0.0	0.05	19.81	0.01	1.830	13.41	12.93	4.3	95.5	0.2	-3.44	0.89	0.88	1.18	3.9	0.004	0.72	0.0	0.04	18.72	0.00	1.818	15.77	0.82	5.1	94.8	0.1	-0.34	1.60	0.86	0.82	1.23	80749	4931	45	1922	115	144	0	logfile
✔	3JAC	6343	2022-12-13	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.72	0.0	0.06	13.91	0.01	1.933	77.25	0.00	27.5	71.1	1.4	-5.52	3.69	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile
✔	3JAF	6346	2022-12-13	2015-06-08	3.8	2.26	—	3.8	0.025	1.93	0.0	0.10	10.09	0.01	2.134	19.02	0.70	0.6	99.4	0.0	-0.82	0.69	0.71	1.52	3.8	0.003	1.04	0.0	0.05	13.94	0.00	2.222	18.49	0.28	2.2	97.8	0.0	0.52	1.36	0.72	0.81	1.69	13865	1710	15	0	15	0	0	logfile
✔	3JAD	6344	2022-12-12	2015-06-08	3.9	2.16	—	3.8	0.008	1.32	0.0	0.06	8.46	0.00	2.250	17.07	0.43	2.7	97.3	0.0	-2.13	0.68	0.72	0.33	2.6	0.004	0.80	0.0	0.04	12.88	0.00	2.172	19.50	0.26	5.1	94.9	0.0	-0.14	1.24	0.70	0.78	0.46	12705	1685	15	0	15	0	0	logfile
✔	3JAE	6345	2022-12-13	2015-06-08	3.9	2.88	—	3.5	0.006	1.25	0.0	0.05	9.25	0.01	2.202	13.89	0.00	0.9	99.1	0.0	-1.69	0.70	0.74	1.87	3.2	0.003	0.85	0.0	0.04	13.60	0.00	2.000	16.30	0.08	2.9	97.1	0.0	0.14	1.48	0.72	0.82	1.52	12825	1690	10	0	10	0	0	logfile
✔	3JAL	6350	2022-12-21	2015-06-16	3.5	3.70	—	3.6	0.009	1.46	5.0	0.08	15.76	0.01	1.948	1.69	1.21	2.9	97.0	0.1	0.16	0.68	0.86	2.81	3.6	0.004	0.65	0.0	0.04	17.02	0.00	1.900	7.75	0.26	2.3	97.7	0.0	0.69	0.79	0.66	0.87	2.55	43012	5428	26	0	18	0	0	logfile

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