Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WTJ	32788	2023-04-19	2022-02-04	4.2	4.07	—	4.1	0.006	0.85	3.0	0.05	13.86	0.01	2.242	10.88	0.58	8.9	91.1	0.0	-2.21	0.55	0.79	—	4.0	0.005	0.75	0.0	0.05	14.22	0.00	2.204	11.35	0.00	14.6	85.4	0.0	-2.22	0.37	0.55	0.81	—	3261	424	3	0	0	0	0	logfile
✔	7WRY	32737	2023-04-19	2022-01-27	3.28	3.44	—	3.4	0.006	0.91	0.0	0.06	14.45	0.01	2.313	3.13	0.29	6.7	93.3	0.0	-2.76	0.58	0.84	4.11	3.4	0.004	0.59	0.0	0.04	15.81	0.00	2.227	9.38	0.86	6.2	93.8	0.0	-1.47	0.39	0.57	0.85	4.21	3267	413	4	0	3	0	0	logfile
✔	7URM	26714	2023-04-19	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	23.67	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.16	0.0	0.05	22.87	0.01	1.983	29.94	0.00	0.0	0.0	0.0	—	1.70	0.15	0.54	—	1905	0	1	90	0	0	0	logfile
✔	7RU8	24699	2023-04-19	2021-08-16	3.8	4.10	3.80	3.9	0.022	1.87	0.0	0.12	10.44	0.01	2.356	1.12	0.00	6.1	93.9	0.0	-0.23	0.77	0.72	2.53	3.9	0.003	0.76	0.0	0.04	14.71	0.00	2.128	13.07	0.29	8.1	91.9	0.0	-1.30	1.48	0.78	0.75	1.12	3198	405	5	0	3	0	0	logfile
✔	7V2Q	31660	2023-04-19	2021-08-09	3.24	3.12	3.13	3.0	0.008	1.14	2.0	0.10	15.54	0.00	2.189	6.75	0.16	6.4	93.6	0.1	-1.01	0.82	0.86	1.80	2.9	0.006	0.70	0.0	0.04	16.49	0.01	2.111	10.94	0.62	6.6	93.3	0.0	-0.43	1.48	0.82	0.88	2.05	52904	2875	25	1391	2	0	0	logfile
✔	7WR9	32719	2023-04-19	2022-01-26	3.24	3.43	—	3.4	0.006	1.05	1.0	0.06	13.72	0.01	2.350	3.92	1.15	9.6	89.9	0.5	-2.72	0.56	0.81	3.11	3.4	0.003	0.60	0.0	0.04	15.21	0.01	2.184	5.80	0.00	7.2	92.6	0.2	-1.66	0.35	0.56	0.83	2.44	3266	411	5	0	5	0	0	logfile
✔	7V2L	31655	2023-04-19	2021-08-09	3.3	3.14	3.24	3.1	0.008	1.07	1.0	0.10	16.30	0.00	2.214	5.68	0.09	6.7	93.1	0.2	-0.61	0.78	0.87	2.42	3.1	0.003	0.56	0.0	0.03	16.73	0.00	2.080	8.24	0.32	7.0	92.9	0.1	-0.28	0.24	0.79	0.88	2.06	53410	2621	24	1507	2	0	0	logfile
✘	7KKL	22910	2023-04-19	2020-10-27	2.85	3.36	2.85	3.2	0.020	1.69	0.0	0.12	10.22	0.01	2.377	0.94	0.41	1.5	98.5	0.0	0.96	0.80	0.84	4.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52461	3360	27	0	63	0	25437	logfile
✔	7XPZ	33386	2023-04-19	2022-05-06	3.4	3.31	3.34	3.6	0.005	0.73	0.0	0.05	12.26	0.01	2.311	6.57	0.58	5.5	94.5	0.0	-6.77	0.49	0.79	3.43	3.6	0.004	0.68	0.0	0.04	14.09	0.00	2.156	8.10	0.58	5.0	95.0	0.0	-0.80	1.17	0.43	0.76	2.59	3227	402	1	0	0	0	0	logfile
✘	7UNC	26620	2023-04-19	2022-04-10	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	105726	7924	38	311	9	0	48096	logfile
✔	7Y13	33555	2023-04-19	2022-06-06	3.1	3.20	3.10	3.2	0.005	0.68	0.0	0.04	13.19	0.01	2.195	8.24	0.00	6.1	93.9	0.0	1.88	0.59	0.80	3.01	3.2	0.003	0.56	0.0	0.04	15.52	0.00	2.192	8.24	0.43	5.3	94.7	0.0	2.76	0.26	0.54	0.80	2.48	2199	264	1	0	7	2	0	logfile
✔	7V22	31634	2023-04-19	2021-08-07	3.38	3.61	—	3.6	0.003	0.66	0.0	0.04	14.10	0.00	2.236	8.81	0.46	12.1	87.5	0.4	-2.81	0.53	0.77	4.24	3.6	0.004	0.70	0.0	0.05	16.03	0.00	2.170	11.14	0.46	13.4	86.2	0.4	-2.46	0.55	0.53	0.80	3.78	1958	240	1	0	0	0	0	logfile
✔	7UL5	26592	2023-04-19	2022-04-03	3.1	3.32	3.08	3.3	0.004	0.64	0.0	0.04	11.76	0.01	2.404	3.68	0.00	3.1	96.9	0.0	-1.07	0.64	0.85	3.67	3.3	0.003	0.52	0.0	0.04	13.33	0.00	2.337	1.84	0.37	1.7	98.3	0.0	2.87	0.30	0.64	0.86	3.19	2773	371	2	0	0	0	0	logfile
✔	7UHB	26511	2023-04-19	2022-03-26	3.0	3.17	2.97	3.2	0.011	1.36	3.0	0.12	9.92	0.00	2.562	5.08	1.42	3.0	96.6	0.4	-0.52	0.52	0.54	-0.09	3.2	0.003	0.61	0.0	0.04	16.83	0.00	2.223	8.94	2.84	3.0	97.0	0.0	0.69	2.47	0.69	0.83	3.49	2141	270	3	0	3	0	0	logfile
✔	7V2o	31658	2023-04-19	2021-08-09	3.5	3.22	3.31	3.0	0.008	1.12	2.0	0.10	16.74	0.00	2.203	6.79	0.18	5.3	94.5	0.2	-0.53	0.81	0.84	2.00	3.0	0.006	0.68	0.0	0.04	17.20	0.01	2.071	11.50	0.41	6.4	93.5	0.1	-0.38	0.37	0.80	0.83	1.99	53005	2624	24	1487	2	0	0	logfile
✘	7UL4	26591	2023-04-19	2022-04-03	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2524	351	3	0	1	4	0	logfile
✔	7XiZ	33213	2023-04-19	2022-04-14	3.74	3.27	3.81	3.1	0.013	1.11	0.0	0.06	17.48	0.01	2.386	4.94	0.00	12.8	86.4	0.8	-3.37	0.35	0.71	1.78	3.1	0.004	0.81	0.0	0.05	17.83	0.01	2.218	16.22	1.70	16.6	82.6	0.8	-3.61	1.54	0.37	0.74	1.40	2161	267	1	0	2	0	0	logfile
✔	7WCK	32423	2023-04-19	2021-12-20	3.49	3.79	—	3.6	0.008	1.35	1.0	0.07	13.91	0.01	2.057	11.02	0.28	7.6	90.7	1.7	-3.09	0.67	0.79	2.16	3.6	0.003	0.79	0.0	0.05	15.11	0.01	2.241	14.95	0.00	7.4	92.2	0.5	-2.25	0.48	0.68	0.81	2.12	3245	416	3	0	0	0	0	logfile
✔	6RE8	4845	2023-04-19	2019-04-12	3.8	3.75	—	3.8	0.006	0.86	0.0	0.05	14.58	0.01	1.985	5.76	0.21	4.3	95.5	0.2	-4.12	0.67	0.81	1.73	3.7	0.004	0.67	0.0	0.04	16.16	0.00	1.859	12.39	0.41	4.7	95.3	0.1	-0.18	1.22	0.67	0.82	1.37	53720	7099	37	0	11	0	0	logfile
✔	7BC5	12139	2023-04-19	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	3.0	0.003	0.72	0.0	0.04	17.04	0.00	2.243	14.42	0.76	7.5	92.5	0.0	-2.75	1.30	0.23	0.58	0.92	1200	161	1	0	0	0	0	logfile

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