Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6D3R	7793	2022-05-12	2018-04-16	4.3	4.80	4.40	4.5	0.017	1.75	0.0	0.10	9.07	0.01	2.385	0.71	0.00	1.5	98.5	0.0	0.66	0.66	0.76	—	4.5	0.002	0.65	0.0	0.04	11.84	0.00	2.257	6.79	0.00	2.2	97.8	0.0	1.88	1.21	0.68	0.77	—	7610	1127	1	0	2	0	0	logfile
✘	6RDK	4821	2022-05-12	2019-04-12	3.7	3.64	—	3.7	0.006	0.91	0.0	0.06	14.09	0.01	2.103	6.44	0.44	4.9	94.9	0.2	-4.35	0.70	0.82	2.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53748	7103	37	0	11	0	0	logfile
✔	6VQi	21351	2022-05-12	2020-02-05	4.3	4.89	—	4.2	0.005	1.14	0.0	0.05	3.90	0.01	2.327	1.95	0.00	1.3	98.2	0.5	2.16	0.56	0.73	—	4.1	0.002	0.54	0.0	0.03	3.92	0.00	2.243	3.65	0.00	5.4	94.5	0.1	3.11	0.74	0.57	0.74	—	5278	1062	8	0	0	0	0	logfile
✔	6SAG	10130	2022-05-12	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.004	0.63	0.0	0.04	15.40	0.01	2.054	3.11	1.17	3.1	96.9	0.0	1.56	0.73	0.60	0.89	6.90	54080	6120	240	120	240	2840	0	logfile
✔	5W3J	8757	2022-05-12	2017-06-07	4.0	4.33	—	4.1	0.002	0.54	0.0	0.04	8.15	0.00	2.262	6.64	0.00	8.7	90.2	1.2	-5.17	0.60	0.82	—	4.1	0.003	0.79	0.0	0.04	13.49	0.00	1.968	15.06	0.27	4.6	95.0	0.3	-0.63	1.75	0.61	0.85	—	6913	867	4	1	3	0	0	logfile
✔	5W3H	8756	2022-05-12	2017-06-07	4.0	4.09	—	4.0	0.007	1.46	0.0	0.08	14.89	0.01	1.046	4.52	0.94	3.8	95.7	0.5	-0.90	0.59	0.85	—	4.0	0.005	0.85	0.0	0.04	17.04	0.00	1.932	15.43	0.67	4.3	95.4	0.3	0.25	1.81	0.59	0.84	—	6876	867	4	1	3	0	0	logfile
✔	6RE6	4843	2022-05-12	2019-04-12	3.4	3.45	3.43	3.4	0.010	0.94	0.0	0.06	14.48	0.01	2.163	5.78	0.27	4.8	95.0	0.2	-3.94	0.65	0.77	2.31	3.4	0.007	0.82	1.0	0.04	16.14	0.01	1.709	11.85	0.02	3.9	96.0	0.1	-0.04	1.22	0.68	0.84	1.94	53720	7099	37	0	11	0	0	logfile
✔	6RDC	4813	2022-05-12	2019-04-12	3.2	3.06	—	3.2	0.013	1.07	1.0	0.06	13.88	0.01	1.864	5.79	0.41	5.2	94.6	0.2	-5.20	0.72	0.84	3.50	3.2	0.004	0.63	0.0	0.04	15.40	0.00	1.921	9.47	0.39	3.8	96.0	0.1	-0.15	0.47	0.74	0.86	2.64	53776	7103	44	0	11	28	0	logfile
✘	6REC	4849	2022-05-12	2019-04-12	3.3	3.39	3.31	3.3	0.011	1.02	0.0	0.06	14.40	0.01	2.140	5.49	0.37	4.8	95.1	0.1	-3.95	0.66	0.81	2.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53756	7104	37	0	11	0	0	logfile
✘	6JH6	9825	2022-05-12	2019-02-17	4.8	5.31	—	4.8	0.006	1.07	1.0	0.05	11.37	0.01	2.197	12.23	0.58	10.8	88.9	0.3	-4.03	0.79	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	108924	14244	12	0	8	0	0	logfile
✔	6FU8	4319	2022-05-12	2018-02-26	3.2	4.43	2.97	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.003	0.82	0.0	0.04	14.91	0.00	2.261	15.40	0.00	10.0	88.8	1.2	-1.84	3.11	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	6RD6	4807	2022-05-12	2019-04-12	2.75	2.89	2.74	2.8	0.006	0.82	0.0	0.05	13.67	0.01	2.306	4.62	0.38	2.5	97.5	0.0	-3.09	0.62	0.85	3.36	2.8	0.004	0.56	0.0	0.04	15.57	0.00	2.184	6.41	1.14	2.5	97.5	0.0	2.19	1.13	0.61	0.86	3.18	7758	1035	10	0	0	32	0	logfile
✔	6HS7	0264	2022-05-12	2018-09-28	4.6	3.02	4.27	4.3	0.006	1.00	1.0	0.05	14.59	0.01	2.156	6.43	0.04	10.5	89.5	0.0	-5.02	0.77	0.69	—	4.3	0.004	0.80	0.0	0.04	14.02	0.00	1.978	14.87	0.04	8.8	91.2	0.0	-2.56	0.91	0.79	0.71	—	52890	6905	25	0	0	0	0	logfile
✔	6DW1	8923	2022-05-12	2018-06-26	3.1	3.36	—	3.3	0.005	0.91	0.0	0.05	11.32	0.01	2.304	4.79	0.00	5.7	94.3	0.0	-3.70	0.68	0.82	4.57	3.3	0.003	0.66	0.0	0.04	15.34	0.00	2.163	9.64	0.22	5.5	94.5	0.0	-1.57	1.19	0.70	0.85	3.99	8595	1046	9	0	24	0	0	logfile
✔	6RDR	4828	2022-05-12	2019-04-12	4.1	4.19	4.13	4.1	0.007	0.94	0.0	0.05	14.97	0.01	1.908	7.03	0.44	5.2	94.6	0.2	-4.22	0.67	0.74	—	4.1	0.007	0.82	1.0	0.04	14.12	0.00	1.890	15.71	0.04	5.8	94.1	0.1	-0.66	1.28	0.69	0.79	—	53748	7103	37	0	11	0	0	logfile
✔	6RDQ	4827	2022-05-12	2019-04-12	4.0	3.99	—	3.9	0.007	0.94	0.0	0.05	14.97	0.01	1.908	7.03	0.44	5.2	94.6	0.2	-4.22	0.72	0.79	—	3.9	0.009	0.91	3.0	0.04	16.63	0.00	1.743	16.58	0.12	5.2	94.7	0.2	-1.07	0.59	0.73	0.81	—	53748	7103	37	0	11	0	0	logfile
✘	6BNP	7116	2022-05-12	2017-11-17	4.6	4.61	3.78	4.4	0.015	2.10	24.0	0.11	16.18	0.02	1.814	0.78	1.80	8.3	90.3	1.3	-3.94	0.48	0.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	56792	7160	22	0	16	0	0	logfile
✔	6RD4	4805	2022-05-12	2019-04-12	2.9	2.95	—	2.9	0.014	1.11	0.0	0.07	14.22	0.01	0.776	6.68	0.69	4.7	95.0	0.2	-5.13	0.74	0.83	3.17	2.9	0.003	0.67	0.0	0.04	16.44	0.00	1.939	10.35	1.91	3.4	96.5	0.1	0.81	0.65	0.76	0.86	2.70	107552	14206	82	0	22	56	0	logfile
✔	6MSD	9217	2022-05-12	2018-10-16	3.2	3.65	—	3.0	0.007	1.05	2.0	0.06	11.55	0.01	2.019	5.72	0.50	8.3	91.5	0.3	-5.07	0.84	0.81	2.24	3.0	0.005	0.76	1.0	0.04	14.22	0.00	1.939	12.16	0.25	7.3	92.7	0.0	-0.78	1.04	0.85	0.85	1.72	105426	13526	55	0	12	0	0	logfile
✔	6XQo	22291	2022-05-12	2020-07-09	3.1	3.54	—	3.5	0.004	0.57	0.0	0.04	15.61	0.00	1.956	9.56	3.52	4.4	95.6	0.0	-2.83	0.76	0.75	2.70	3.5	0.004	0.63	0.0	0.04	16.63	0.00	2.191	10.65	0.70	2.6	97.4	0.0	0.73	1.25	0.78	0.78	1.70	4301	560	4	0	4	0	0	logfile

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