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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6Q98 | 4477 | 2024-03-02 | 2018-12-17 | 4.3 | 4.44 | — | 4.4 | 0.008 | 1.20 | 0.0 | 0.15 | 25.15 | 0.02 | 1.954 | 10.00 | 0.48 | 12.0 | 87.9 | 0.0 | -4.86 | 0.83 | 0.80 | — | 4.4 | 0.005 | 0.78 | 0.0 | 0.04 | 24.25 | 0.01 | 1.270 | 23.40 | 0.04 | 12.3 | 87.7 | 0.0 | -2.91 | 1.26 | 0.82 | 0.80 | — | 153878 | 6132 | 71 | 4920 | 431 | 2 | 0 | logfile |
✔ | 6Q9A | 4478 | 2024-03-02 | 2018-12-17 | 3.7 | 3.75 | — | 3.7 | 0.009 | 1.12 | 0.0 | 0.17 | 24.21 | 0.02 | 1.280 | 5.71 | 0.79 | 9.1 | 90.9 | 0.1 | -4.18 | 0.84 | 0.83 | 1.58 | 3.7 | 0.004 | 0.69 | 2.0 | 0.04 | 23.73 | 0.01 | 1.105 | 13.26 | 5.19 | 6.9 | 93.1 | 0.0 | -1.53 | 2.33 | 0.84 | 0.82 | 1.25 | 155169 | 6092 | 70 | 4996 | 439 | 2 | 0 | logfile |
✔ | 5iQR | 8107 | 2024-03-02 | 2016-03-11 | 3.0 | 3.10 | 3.03 | 3.1 | 0.008 | 1.25 | 41.0 | 0.10 | 24.24 | 0.02 | 0.899 | 7.48 | 6.07 | 7.5 | 91.0 | 1.5 | -2.52 | 0.76 | 0.81 | 1.93 | 3.0 | 0.003 | 0.68 | 0.0 | 0.03 | 23.77 | 0.01 | 1.070 | 14.69 | 4.52 | 5.3 | 94.4 | 0.2 | -0.61 | 2.06 | 0.81 | 0.86 | 1.86 | 154519 | 6570 | 74 | 4794 | 303 | 2 | 0 | logfile |
✔ | 6M62 | 30108 | 2024-03-02 | 2020-03-12 | 3.2 | 3.35 | — | 3.3 | 0.012 | 1.03 | 0.0 | 0.06 | 23.52 | 0.01 | 1.750 | 17.45 | 8.91 | 14.8 | 84.9 | 0.2 | -4.39 | 0.73 | 0.81 | 2.04 | 3.3 | 0.005 | 0.70 | 0.0 | 0.04 | 23.07 | 0.00 | 1.830 | 13.43 | 5.79 | 10.3 | 89.6 | 0.1 | -1.71 | 1.10 | 0.75 | 0.84 | 1.81 | 153289 | 10320 | 64 | 3316 | 8 | 0 | 0 | logfile |
✔ | 5oT7 | 3852 | 2024-03-02 | 2017-08-21 | 3.8 | 3.85 | 3.80 | 3.8 | 0.003 | 0.84 | 0.0 | 0.04 | 23.30 | 0.01 | 1.298 | 6.70 | 0.49 | 12.5 | 87.2 | 0.3 | -5.45 | 0.77 | 0.70 | 1.03 | 3.8 | 0.007 | 0.83 | 0.0 | 0.04 | 23.82 | 0.01 | 1.069 | 21.99 | 5.35 | 14.9 | 84.9 | 0.3 | -3.61 | 1.32 | 0.84 | 0.81 | 0.87 | 154665 | 6718 | 75 | 4614 | 805 | 0 | 0 | logfile |
✔ | 6Q95 | 4475 | 2024-03-02 | 2018-12-17 | 3.7 | 3.72 | — | 3.7 | 0.012 | 1.38 | 0.0 | 0.06 | 25.82 | 0.01 | 1.247 | 8.93 | 1.13 | 16.6 | 82.6 | 0.8 | -5.45 | 0.81 | 0.82 | 1.61 | 3.7 | 0.004 | 0.85 | 0.0 | 0.04 | 25.48 | 0.01 | 1.076 | 18.76 | 4.93 | 13.9 | 85.6 | 0.4 | -3.23 | 1.95 | 0.79 | 0.80 | 1.17 | 154751 | 5924 | 84 | 4932 | 910 | 0 | 0 | logfile |
✔ | 6U2L | 20623 | 2024-03-02 | 2019-08-20 | 2.83 | 2.89 | 2.94 | 2.9 | 0.009 | 1.03 | 0.0 | 0.06 | 10.25 | 0.01 | 2.351 | 3.16 | 0.19 | 7.1 | 92.9 | 0.0 | -3.75 | 0.78 | 0.84 | 3.92 | 2.9 | 0.006 | 0.92 | 9.0 | 0.05 | 15.78 | 0.01 | 1.978 | 8.59 | 3.53 | 6.7 | 93.3 | 0.0 | -0.89 | 0.69 | 0.80 | 0.87 | 3.28 | 153756 | 19616 | 96 | 0 | 96 | 0 | 0 | logfile |
✔ | 8FL6 | 29268 | 2024-03-02 | 2022-12-21 | 2.62 | 2.81 | 2.72 | 2.9 | 0.008 | 0.77 | 0.0 | 0.04 | 21.83 | 0.02 | 1.894 | 2.18 | 0.00 | 1.9 | 98.1 | 0.0 | 0.69 | 0.85 | 0.85 | 3.93 | 2.9 | 0.003 | 0.68 | 0.0 | 0.03 | 22.13 | 0.01 | 1.916 | 5.77 | 2.12 | 1.9 | 98.1 | 0.0 | 1.31 | 0.45 | 0.85 | 0.87 | 3.37 | 153706 | 9066 | 71 | 3752 | 95 | 0 | 0 | logfile |
✔ | 3JCE | 6550 | 2024-03-02 | 2015-12-01 | 3.2 | 4.36 | — | 14.0 | 0.008 | 0.88 | 0.0 | 0.04 | 22.68 | 0.00 | 1.106 | 32.64 | 0.47 | 10.4 | 84.8 | 4.8 | -2.93 | 0.33 | 0.04 | 0.16 | 3.1 | 0.006 | 1.17 | 5.0 | 0.05 | 25.14 | 0.01 | 1.590 | 49.53 | 2.65 | 13.3 | 85.5 | 1.2 | -3.72 | 1.89 | 0.70 | 0.41 | 0.15 | 154017 | 6546 | 59 | 4798 | 2 | 0 | 0 | logfile |
✔ | 5WE4 | 8814 | 2024-03-02 | 2017-07-07 | 3.1 | 3.04 | 3.02 | 3.0 | 0.008 | 1.14 | 3.0 | 0.10 | 24.21 | 0.02 | 1.575 | 3.75 | 3.52 | 9.8 | 87.9 | 2.3 | -4.03 | 0.78 | 0.81 | 2.62 | 3.0 | 0.005 | 0.78 | 0.0 | 0.04 | 23.77 | 0.01 | 1.021 | 11.61 | 5.67 | 8.3 | 91.2 | 0.5 | -1.85 | 3.97 | 0.84 | 0.83 | 2.36 | 155067 | 6324 | 117 | 4802 | 1620 | 996 | 0 | logfile |
✔ | 8FLA | 29272 | 2024-03-02 | 2022-12-21 | 2.63 | 2.81 | 2.75 | 2.9 | 0.007 | 0.74 | 0.0 | 0.04 | 21.91 | 0.02 | 1.946 | 2.05 | 0.00 | 1.2 | 98.8 | 0.0 | 1.16 | 0.85 | 0.85 | 3.77 | 2.9 | 0.004 | 0.72 | 2.0 | 0.03 | 22.17 | 0.01 | 1.926 | 5.92 | 2.12 | 1.9 | 98.1 | 0.0 | 1.30 | 0.47 | 0.85 | 0.87 | 3.47 | 153309 | 9002 | 72 | 3767 | 95 | 0 | 0 | logfile |
✔ | 5UYN | 8618 | 2024-03-02 | 2017-02-24 | 4.0 | 4.51 | 4.60 | 3.6 | 0.007 | 1.03 | 0.0 | 0.09 | 22.35 | 0.01 | 2.337 | 13.33 | 1.31 | 13.9 | 83.2 | 2.9 | -5.06 | 0.86 | 0.79 | — | 3.6 | 0.005 | 0.77 | 2.0 | 0.04 | 24.01 | 0.01 | 1.714 | 31.27 | 5.35 | 12.9 | 86.8 | 0.3 | -2.94 | 1.42 | 0.86 | 0.81 | — | 153717 | 6474 | 60 | 4809 | 1 | 0 | 0 | logfile |
✔ | 5KPV | 8280 | 2024-03-02 | 2016-07-05 | 4.1 | 5.32 | 4.22 | 4.1 | 0.008 | 1.18 | 5.0 | 0.09 | 22.93 | 0.01 | 2.074 | 34.60 | 0.66 | 13.5 | 80.3 | 6.2 | -4.67 | 0.90 | 0.78 | — | 4.1 | 0.004 | 0.70 | 0.0 | 0.04 | 23.46 | 0.01 | 2.026 | 29.54 | 0.00 | 10.9 | 88.2 | 0.9 | -1.99 | 1.78 | 0.94 | 0.90 | — | 154603 | 6623 | 59 | 4812 | 0 | 0 | 0 | logfile |
✔ | 5UYP | 8619 | 2024-03-02 | 2017-02-24 | 3.9 | 4.42 | 4.29 | 3.6 | 0.007 | 1.07 | 0.0 | 0.09 | 22.43 | 0.01 | 1.318 | 13.07 | 1.57 | 14.3 | 82.6 | 3.1 | -5.15 | 0.87 | 0.79 | 0.53 | 3.6 | 0.004 | 0.73 | 0.0 | 0.04 | 23.84 | 0.01 | 1.030 | 28.72 | 5.39 | 12.3 | 87.6 | 0.2 | -3.02 | 0.77 | 0.87 | 0.82 | 0.39 | 153780 | 6476 | 63 | 4811 | 1 | 0 | 0 | logfile |
✔ | 5UYM | 8617 | 2024-03-02 | 2017-02-24 | 3.2 | 4.16 | 3.27 | 3.2 | 0.007 | 1.00 | 0.0 | 0.08 | 22.19 | 0.01 | 1.331 | 12.54 | 1.17 | 11.5 | 86.5 | 2.0 | -5.21 | 0.91 | 0.82 | 2.50 | 3.2 | 0.005 | 0.68 | 0.0 | 0.04 | 22.98 | 0.00 | 1.782 | 18.57 | 5.35 | 10.1 | 89.7 | 0.2 | -1.76 | 1.78 | 0.95 | 0.91 | 1.83 | 154139 | 6476 | 72 | 4810 | 386 | 0 | 0 | logfile |
✔ | 7TGH | 25882 | 2024-03-02 | 2022-01-07 | 2.6 | 2.85 | — | 2.7 | 0.005 | 0.59 | 0.0 | 0.69 | 16.31 | 0.00 | 2.115 | 6.27 | 0.01 | 3.2 | 96.8 | 0.0 | 0.89 | 0.79 | 0.86 | 3.66 | 2.7 | 0.006 | 1.08 | 0.0 | 0.21 | 17.04 | 0.00 | 1.468 | 6.56 | 1.21 | 3.0 | 97.0 | 0.0 | 1.36 | 0.89 | 0.80 | 0.88 | 3.35 | 153366 | 18084 | 146 | 0 | 313 | 0 | 0 | logfile |
✔ | 5WFS | 8829 | 2024-03-02 | 2017-07-12 | 3.0 | 3.09 | 3.13 | 3.0 | 0.008 | 1.16 | 2.0 | 0.10 | 24.59 | 0.02 | 1.324 | 4.18 | 3.10 | 9.3 | 88.2 | 2.4 | -4.11 | 0.73 | 0.77 | 2.42 | 3.0 | 0.006 | 0.84 | 1.0 | 0.04 | 24.01 | 0.01 | 1.031 | 12.54 | 4.92 | 8.9 | 90.5 | 0.6 | -1.93 | 1.52 | 0.84 | 0.85 | 2.39 | 155100 | 6324 | 114 | 4802 | 1479 | 1175 | 0 | logfile |
✔ | 5UYQ | 8620 | 2024-03-02 | 2017-02-24 | 3.8 | 4.28 | 4.16 | 3.7 | 0.007 | 1.05 | 0.0 | 0.09 | 22.52 | 0.01 | 1.314 | 14.34 | 1.29 | 13.9 | 83.4 | 2.7 | -5.24 | 0.86 | 0.79 | 0.45 | 3.5 | 0.005 | 0.78 | 1.0 | 0.04 | 23.98 | 0.01 | 1.096 | 30.27 | 5.43 | 13.4 | 86.4 | 0.2 | -3.16 | 0.73 | 0.87 | 0.82 | 0.42 | 153759 | 6476 | 63 | 4810 | 2 | 0 | 0 | logfile |
✔ | 5KPX | 8282 | 2024-03-02 | 2016-07-05 | 3.9 | 5.30 | 4.08 | 3.8 | 0.008 | 1.18 | 6.0 | 0.09 | 22.84 | 0.01 | 2.087 | 29.88 | 0.58 | 13.2 | 80.2 | 6.6 | -4.56 | 0.90 | 0.77 | 0.50 | 4.0 | 0.006 | 0.80 | 1.0 | 0.04 | 23.90 | 0.01 | 1.550 | 36.46 | 4.53 | 11.5 | 87.5 | 1.0 | -2.35 | 1.08 | 0.94 | 0.90 | 0.13 | 154603 | 6623 | 59 | 4812 | 0 | 0 | 0 | logfile |
✔ | 7K52 | 22671 | 2024-03-02 | 2020-09-16 | 3.4 | 3.87 | — | 3.3 | 0.011 | 1.24 | 0.0 | 0.10 | 22.47 | 0.01 | 1.331 | 22.57 | 2.03 | 16.0 | 82.6 | 1.4 | -4.35 | 0.84 | 0.82 | 1.25 | 3.2 | 0.005 | 0.72 | 0.0 | 0.04 | 23.26 | 0.01 | 1.940 | 20.10 | 4.97 | 12.6 | 87.3 | 0.1 | -2.60 | 1.19 | 0.85 | 0.84 | 0.95 | 153370 | 6631 | 62 | 4732 | 2 | 0 | 0 | logfile |