Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6HS7	0264	2022-12-11	2018-09-28	4.6	3.02	4.27	4.3	0.006	1.00	1.0	0.05	14.59	0.01	2.156	6.43	0.04	10.5	89.5	0.0	-5.02	0.77	0.69	—	4.3	0.003	0.72	0.0	0.04	14.07	0.00	2.125	10.42	0.05	7.9	92.1	0.0	-2.28	0.94	0.79	0.71	—	52890	6905	25	0	0	0	0	logfile
✔	6SAG	10130	2022-12-11	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.004	0.65	0.0	0.04	15.31	0.01	2.030	3.13	1.19	3.0	97.0	0.0	1.39	0.73	0.59	0.89	6.90	54080	6120	240	120	240	2840	0	logfile
✔	6JC3	9793	2022-12-11	2019-01-28	4.8	4.87	—	4.8	0.010	1.35	2.0	0.07	15.57	0.01	1.512	30.30	3.10	10.1	89.1	0.8	-4.39	0.42	0.78	—	4.7	0.003	0.71	0.0	0.04	13.52	0.00	2.128	11.22	0.00	4.4	95.6	0.0	0.91	4.23	0.43	0.81	—	3154	391	2	6	0	0	0	logfile
✔	6QV6	4645	2022-12-11	2019-03-01	3.63	4.00	3.46	4.0	0.010	1.31	0.0	0.07	11.64	0.01	2.282	4.71	1.04	8.0	91.6	0.4	-4.57	0.63	0.82	2.87	4.0	0.003	0.77	0.0	0.04	15.29	0.01	2.038	12.57	0.39	6.3	93.7	0.0	0.95	0.66	0.62	0.81	1.94	7208	938	2	0	0	0	0	logfile
✔	5LKi	4068	2022-12-11	2016-07-22	3.46	3.72	—	3.5	0.013	1.24	5.0	0.06	10.71	0.01	0.579	39.63	0.18	7.7	91.7	0.6	-4.39	0.65	0.79	2.37	3.5	0.003	0.82	0.0	0.04	15.10	0.00	2.086	15.11	0.39	6.9	92.7	0.4	0.29	0.82	0.63	0.80	1.58	55415	7135	5	0	0	0	0	logfile
✔	6RDQ	4827	2022-12-11	2019-04-12	4.0	3.99	—	3.9	0.007	0.94	0.0	0.05	14.97	0.01	1.908	7.03	0.44	5.2	94.6	0.2	-4.22	0.72	0.79	—	3.9	0.004	0.70	0.0	0.04	16.62	0.00	1.865	14.20	0.48	5.6	94.3	0.1	-0.53	0.63	0.72	0.81	—	53748	7103	37	0	11	0	0	logfile
✔	6RDZ	4836	2022-12-11	2019-04-12	3.5	3.36	—	3.4	0.009	0.96	1.0	0.06	14.94	0.01	1.846	6.12	0.43	5.4	94.4	0.2	-4.22	0.69	0.82	2.47	3.4	0.004	0.61	0.0	0.04	16.20	0.00	1.906	10.48	0.34	4.3	95.6	0.1	-0.01	0.49	0.69	0.82	2.06	53720	7099	37	0	11	0	0	logfile
✔	6E7B	8997	2022-12-11	2018-07-25	3.5	3.67	3.28	3.7	0.006	0.83	0.0	0.04	11.47	0.00	2.009	5.71	0.14	6.5	93.5	0.0	-4.13	0.56	0.76	2.80	3.6	0.003	0.71	0.0	0.04	15.64	0.00	1.928	15.99	0.27	4.2	95.8	0.0	-1.25	0.95	0.58	0.80	2.52	6774	854	4	0	4	0	0	logfile
✔	6RDH	4818	2022-12-11	2019-04-12	3.0	3.16	—	3.2	0.010	1.01	1.0	0.06	14.11	0.01	2.025	5.68	0.34	5.0	94.8	0.2	-3.87	0.72	0.85	3.15	3.2	0.003	0.63	0.0	0.04	16.16	0.00	1.911	10.07	2.08	3.9	95.9	0.1	0.11	1.17	0.73	0.87	2.49	53748	7103	37	0	11	0	0	logfile
✔	6RDT	4830	2022-12-11	2019-04-12	3.4	3.29	—	3.4	0.011	1.02	1.0	0.06	15.14	0.01	2.058	6.14	0.60	5.7	94.0	0.3	-4.05	0.68	0.83	2.56	3.4	0.002	0.59	0.0	0.04	16.24	0.00	1.975	9.86	0.20	4.1	95.8	0.1	0.25	2.40	0.69	0.85	1.91	53748	7103	37	0	11	0	0	logfile
✔	6GC7	4382	2022-12-11	2018-04-17	4.3	4.85	—	4.4	0.003	0.67	0.0	0.03	13.13	0.00	2.251	5.14	0.28	5.9	93.9	0.1	-4.27	0.76	0.61	—	4.4	0.008	0.74	0.0	0.04	15.49	0.01	1.966	30.02	0.00	9.7	90.2	0.1	-2.10	1.66	0.91	0.87	—	54410	1738	17	1901	0	0	0	logfile
✔	6MRT	9212	2022-12-11	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.46	0.0	0.03	15.43	0.00	2.226	3.14	1.29	0.5	99.5	0.0	5.71	3.08	0.73	0.86	2.07	26868	3420	12	0	0	0	0	logfile
✔	6RDL	4822	2022-12-11	2019-04-12	3.7	3.82	3.81	3.8	0.006	0.91	0.0	0.06	14.09	0.01	2.103	6.44	0.44	4.9	94.9	0.2	-4.35	0.65	0.77	1.54	3.8	0.003	0.67	0.0	0.04	16.08	0.00	1.954	12.67	0.41	4.4	95.5	0.1	-0.29	1.27	0.66	0.80	1.12	53748	7103	37	0	11	0	0	logfile
✔	6RiU	4898	2022-12-11	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.003	0.67	0.0	0.03	16.53	0.00	2.057	13.17	0.00	5.1	94.9	0.0	-0.39	1.43	0.61	0.75	1.30	2882	182	2	0	0	0	1430	logfile
✔	6CoZ	7545	2022-12-11	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.82	0.0	0.04	4.96	0.00	2.368	4.42	0.00	8.3	91.7	0.0	-1.63	1.58	0.82	0.77	—	1586	320	2	0	0	0	0	logfile
✔	3JBS	6478	2022-12-11	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.1	0.003	0.63	0.0	0.04	17.65	0.00	2.262	7.24	1.97	1.7	98.3	0.0	1.01	1.32	0.21	0.80	3.18	1401	175	1	0	0	0	0	logfile
✔	6RET	4856	2022-12-11	2019-04-12	4.3	4.36	4.35	4.3	0.006	0.95	0.0	0.06	15.02	0.01	1.680	8.29	0.41	6.0	93.9	0.1	-5.14	0.59	0.72	—	4.3	0.004	0.75	0.0	0.05	14.42	0.00	1.869	17.61	0.04	6.8	93.1	0.1	-1.34	0.72	0.60	0.75	—	53756	7104	37	0	11	0	0	logfile
✔	6RE0	4837	2022-12-11	2019-04-12	3.6	3.72	3.63	3.7	0.009	0.96	1.0	0.06	14.94	0.01	1.846	6.12	0.43	5.4	94.4	0.2	-4.22	0.64	0.75	1.61	3.7	0.003	0.64	0.0	0.04	16.46	0.00	1.948	12.20	0.32	4.2	95.7	0.1	-0.12	0.67	0.66	0.79	1.38	53720	7099	37	0	11	0	0	logfile
✔	6RES	4855	2022-12-11	2019-04-12	4.3	4.30	—	4.2	0.006	0.95	0.0	0.06	15.02	0.01	1.680	8.29	0.41	6.0	93.9	0.1	-5.14	0.64	0.77	—	4.2	0.003	0.69	0.0	0.04	14.38	0.00	1.896	15.39	0.00	5.3	94.6	0.1	-0.94	1.27	0.64	0.77	—	53756	7104	37	0	11	0	0	logfile
✔	6REC	4849	2022-12-11	2019-04-12	3.3	3.39	3.31	3.3	0.011	1.02	0.0	0.06	14.40	0.01	2.140	5.49	0.37	4.8	95.1	0.1	-3.95	0.66	0.81	2.79	3.3	0.003	0.61	0.0	0.04	15.84	0.00	1.945	10.22	0.18	4.2	95.7	0.1	-0.05	1.60	0.68	0.86	2.15	53756	7104	37	0	11	0	0	logfile

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