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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6HS7 | 0264 | 2022-12-11 | 2018-09-28 | 4.6 | 3.02 | 4.27 | 4.3 | 0.006 | 1.00 | 1.0 | 0.05 | 14.59 | 0.01 | 2.156 | 6.43 | 0.04 | 10.5 | 89.5 | 0.0 | -5.02 | 0.77 | 0.69 | — | 4.3 | 0.003 | 0.72 | 0.0 | 0.04 | 14.07 | 0.00 | 2.125 | 10.42 | 0.05 | 7.9 | 92.1 | 0.0 | -2.28 | 0.94 | 0.79 | 0.71 | — | 52890 | 6905 | 25 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SAG | 10130 | 2022-12-11 | 2019-07-16 | 2.0 | 2.11 | 2.01 | 2.1 | 0.004 | 0.65 | 0.0 | 0.04 | 12.99 | 0.00 | 0.351 | 2.79 | 0.00 | 2.6 | 97.4 | 0.0 | -0.33 | 0.58 | 0.86 | 6.64 | 2.1 | 0.004 | 0.65 | 0.0 | 0.04 | 15.31 | 0.01 | 2.030 | 3.13 | 1.19 | 3.0 | 97.0 | 0.0 | 1.39 | 0.73 | 0.59 | 0.89 | 6.90 | 54080 | 6120 | 240 | 120 | 240 | 2840 | 0 | logfile |
✔ | 6JC3 | 9793 | 2022-12-11 | 2019-01-28 | 4.8 | 4.87 | — | 4.8 | 0.010 | 1.35 | 2.0 | 0.07 | 15.57 | 0.01 | 1.512 | 30.30 | 3.10 | 10.1 | 89.1 | 0.8 | -4.39 | 0.42 | 0.78 | — | 4.7 | 0.003 | 0.71 | 0.0 | 0.04 | 13.52 | 0.00 | 2.128 | 11.22 | 0.00 | 4.4 | 95.6 | 0.0 | 0.91 | 4.23 | 0.43 | 0.81 | — | 3154 | 391 | 2 | 6 | 0 | 0 | 0 | logfile |
✔ | 6QV6 | 4645 | 2022-12-11 | 2019-03-01 | 3.63 | 4.00 | 3.46 | 4.0 | 0.010 | 1.31 | 0.0 | 0.07 | 11.64 | 0.01 | 2.282 | 4.71 | 1.04 | 8.0 | 91.6 | 0.4 | -4.57 | 0.63 | 0.82 | 2.87 | 4.0 | 0.003 | 0.77 | 0.0 | 0.04 | 15.29 | 0.01 | 2.038 | 12.57 | 0.39 | 6.3 | 93.7 | 0.0 | 0.95 | 0.66 | 0.62 | 0.81 | 1.94 | 7208 | 938 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LKi | 4068 | 2022-12-11 | 2016-07-22 | 3.46 | 3.72 | — | 3.5 | 0.013 | 1.24 | 5.0 | 0.06 | 10.71 | 0.01 | 0.579 | 39.63 | 0.18 | 7.7 | 91.7 | 0.6 | -4.39 | 0.65 | 0.79 | 2.37 | 3.5 | 0.003 | 0.82 | 0.0 | 0.04 | 15.10 | 0.00 | 2.086 | 15.11 | 0.39 | 6.9 | 92.7 | 0.4 | 0.29 | 0.82 | 0.63 | 0.80 | 1.58 | 55415 | 7135 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RDQ | 4827 | 2022-12-11 | 2019-04-12 | 4.0 | 3.99 | — | 3.9 | 0.007 | 0.94 | 0.0 | 0.05 | 14.97 | 0.01 | 1.908 | 7.03 | 0.44 | 5.2 | 94.6 | 0.2 | -4.22 | 0.72 | 0.79 | — | 3.9 | 0.004 | 0.70 | 0.0 | 0.04 | 16.62 | 0.00 | 1.865 | 14.20 | 0.48 | 5.6 | 94.3 | 0.1 | -0.53 | 0.63 | 0.72 | 0.81 | — | 53748 | 7103 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 6RDZ | 4836 | 2022-12-11 | 2019-04-12 | 3.5 | 3.36 | — | 3.4 | 0.009 | 0.96 | 1.0 | 0.06 | 14.94 | 0.01 | 1.846 | 6.12 | 0.43 | 5.4 | 94.4 | 0.2 | -4.22 | 0.69 | 0.82 | 2.47 | 3.4 | 0.004 | 0.61 | 0.0 | 0.04 | 16.20 | 0.00 | 1.906 | 10.48 | 0.34 | 4.3 | 95.6 | 0.1 | -0.01 | 0.49 | 0.69 | 0.82 | 2.06 | 53720 | 7099 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 6E7B | 8997 | 2022-12-11 | 2018-07-25 | 3.5 | 3.67 | 3.28 | 3.7 | 0.006 | 0.83 | 0.0 | 0.04 | 11.47 | 0.00 | 2.009 | 5.71 | 0.14 | 6.5 | 93.5 | 0.0 | -4.13 | 0.56 | 0.76 | 2.80 | 3.6 | 0.003 | 0.71 | 0.0 | 0.04 | 15.64 | 0.00 | 1.928 | 15.99 | 0.27 | 4.2 | 95.8 | 0.0 | -1.25 | 0.95 | 0.58 | 0.80 | 2.52 | 6774 | 854 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6RDH | 4818 | 2022-12-11 | 2019-04-12 | 3.0 | 3.16 | — | 3.2 | 0.010 | 1.01 | 1.0 | 0.06 | 14.11 | 0.01 | 2.025 | 5.68 | 0.34 | 5.0 | 94.8 | 0.2 | -3.87 | 0.72 | 0.85 | 3.15 | 3.2 | 0.003 | 0.63 | 0.0 | 0.04 | 16.16 | 0.00 | 1.911 | 10.07 | 2.08 | 3.9 | 95.9 | 0.1 | 0.11 | 1.17 | 0.73 | 0.87 | 2.49 | 53748 | 7103 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 6RDT | 4830 | 2022-12-11 | 2019-04-12 | 3.4 | 3.29 | — | 3.4 | 0.011 | 1.02 | 1.0 | 0.06 | 15.14 | 0.01 | 2.058 | 6.14 | 0.60 | 5.7 | 94.0 | 0.3 | -4.05 | 0.68 | 0.83 | 2.56 | 3.4 | 0.002 | 0.59 | 0.0 | 0.04 | 16.24 | 0.00 | 1.975 | 9.86 | 0.20 | 4.1 | 95.8 | 0.1 | 0.25 | 2.40 | 0.69 | 0.85 | 1.91 | 53748 | 7103 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 6GC7 | 4382 | 2022-12-11 | 2018-04-17 | 4.3 | 4.85 | — | 4.4 | 0.003 | 0.67 | 0.0 | 0.03 | 13.13 | 0.00 | 2.251 | 5.14 | 0.28 | 5.9 | 93.9 | 0.1 | -4.27 | 0.76 | 0.61 | — | 4.4 | 0.008 | 0.74 | 0.0 | 0.04 | 15.49 | 0.01 | 1.966 | 30.02 | 0.00 | 9.7 | 90.2 | 0.1 | -2.10 | 1.66 | 0.91 | 0.87 | — | 54410 | 1738 | 17 | 1901 | 0 | 0 | 0 | logfile |
✔ | 6MRT | 9212 | 2022-12-11 | 2018-10-15 | 2.8 | 2.93 | — | 2.9 | 0.008 | 0.90 | 0.0 | 0.05 | 10.67 | 0.01 | 2.260 | 1.61 | 0.82 | 1.1 | 98.9 | 0.0 | -1.27 | 0.70 | 0.84 | 3.77 | 2.9 | 0.003 | 0.46 | 0.0 | 0.03 | 15.43 | 0.00 | 2.226 | 3.14 | 1.29 | 0.5 | 99.5 | 0.0 | 5.71 | 3.08 | 0.73 | 0.86 | 2.07 | 26868 | 3420 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RDL | 4822 | 2022-12-11 | 2019-04-12 | 3.7 | 3.82 | 3.81 | 3.8 | 0.006 | 0.91 | 0.0 | 0.06 | 14.09 | 0.01 | 2.103 | 6.44 | 0.44 | 4.9 | 94.9 | 0.2 | -4.35 | 0.65 | 0.77 | 1.54 | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 16.08 | 0.00 | 1.954 | 12.67 | 0.41 | 4.4 | 95.5 | 0.1 | -0.29 | 1.27 | 0.66 | 0.80 | 1.12 | 53748 | 7103 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 6RiU | 4898 | 2022-12-11 | 2019-04-25 | 3.9 | 6.21 | 2.04 | 7.0 | 0.008 | 1.19 | 0.0 | 0.09 | 15.19 | 0.01 | 2.182 | 5.20 | 0.00 | 8.4 | 91.6 | 0.0 | -5.77 | 0.59 | 0.69 | 0.56 | 7.1 | 0.003 | 0.67 | 0.0 | 0.03 | 16.53 | 0.00 | 2.057 | 13.17 | 0.00 | 5.1 | 94.9 | 0.0 | -0.39 | 1.43 | 0.61 | 0.75 | 1.30 | 2882 | 182 | 2 | 0 | 0 | 0 | 1430 | logfile |
✔ | 6CoZ | 7545 | 2022-12-11 | 2018-03-13 | 3.36 | 4.78 | — | 4.7 | 0.009 | 1.71 | 0.0 | 0.07 | 5.63 | 0.01 | 2.541 | 0.00 | 0.00 | 3.2 | 96.2 | 0.6 | -2.49 | 0.78 | 0.68 | — | 4.4 | 0.003 | 0.82 | 0.0 | 0.04 | 4.96 | 0.00 | 2.368 | 4.42 | 0.00 | 8.3 | 91.7 | 0.0 | -1.63 | 1.58 | 0.82 | 0.77 | — | 1586 | 320 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JBS | 6478 | 2022-12-11 | 2015-10-13 | 2.9 | 3.04 | — | 3.2 | 0.010 | 1.32 | 0.0 | 0.06 | 8.67 | 0.01 | 2.510 | 0.00 | 0.00 | 2.9 | 97.1 | 0.0 | 0.51 | 0.21 | 0.76 | 4.15 | 3.1 | 0.003 | 0.63 | 0.0 | 0.04 | 17.65 | 0.00 | 2.262 | 7.24 | 1.97 | 1.7 | 98.3 | 0.0 | 1.01 | 1.32 | 0.21 | 0.80 | 3.18 | 1401 | 175 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RET | 4856 | 2022-12-11 | 2019-04-12 | 4.3 | 4.36 | 4.35 | 4.3 | 0.006 | 0.95 | 0.0 | 0.06 | 15.02 | 0.01 | 1.680 | 8.29 | 0.41 | 6.0 | 93.9 | 0.1 | -5.14 | 0.59 | 0.72 | — | 4.3 | 0.004 | 0.75 | 0.0 | 0.05 | 14.42 | 0.00 | 1.869 | 17.61 | 0.04 | 6.8 | 93.1 | 0.1 | -1.34 | 0.72 | 0.60 | 0.75 | — | 53756 | 7104 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 6RE0 | 4837 | 2022-12-11 | 2019-04-12 | 3.6 | 3.72 | 3.63 | 3.7 | 0.009 | 0.96 | 1.0 | 0.06 | 14.94 | 0.01 | 1.846 | 6.12 | 0.43 | 5.4 | 94.4 | 0.2 | -4.22 | 0.64 | 0.75 | 1.61 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 16.46 | 0.00 | 1.948 | 12.20 | 0.32 | 4.2 | 95.7 | 0.1 | -0.12 | 0.67 | 0.66 | 0.79 | 1.38 | 53720 | 7099 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 6RES | 4855 | 2022-12-11 | 2019-04-12 | 4.3 | 4.30 | — | 4.2 | 0.006 | 0.95 | 0.0 | 0.06 | 15.02 | 0.01 | 1.680 | 8.29 | 0.41 | 6.0 | 93.9 | 0.1 | -5.14 | 0.64 | 0.77 | — | 4.2 | 0.003 | 0.69 | 0.0 | 0.04 | 14.38 | 0.00 | 1.896 | 15.39 | 0.00 | 5.3 | 94.6 | 0.1 | -0.94 | 1.27 | 0.64 | 0.77 | — | 53756 | 7104 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 6REC | 4849 | 2022-12-11 | 2019-04-12 | 3.3 | 3.39 | 3.31 | 3.3 | 0.011 | 1.02 | 0.0 | 0.06 | 14.40 | 0.01 | 2.140 | 5.49 | 0.37 | 4.8 | 95.1 | 0.1 | -3.95 | 0.66 | 0.81 | 2.79 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 15.84 | 0.00 | 1.945 | 10.22 | 0.18 | 4.2 | 95.7 | 0.1 | -0.05 | 1.60 | 0.68 | 0.86 | 2.15 | 53756 | 7104 | 37 | 0 | 11 | 0 | 0 | logfile |