Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Ji0	22341	2023-09-27	2020-07-21	2.95	3.30	3.08	3.2	0.003	0.48	0.0	0.04	12.97	0.00	2.233	3.94	5.91	4.5	95.5	0.0	-3.04	0.73	0.84	4.32	3.2	0.002	0.47	0.0	0.04	15.32	0.00	2.210	3.66	2.96	3.8	96.2	0.0	1.47	0.45	0.70	0.83	3.46	3556	432	4	0	0	0	0	logfile
✔	8E4N	27893	2023-09-27	2022-08-18	3.07	3.58	3.04	3.3	0.003	0.47	0.0	0.04	11.07	0.01	2.123	8.01	0.00	1.8	98.2	0.0	3.01	0.70	0.79	2.72	3.3	0.003	0.68	0.0	0.03	13.61	0.00	2.129	8.20	0.46	3.0	97.0	0.1	2.62	0.69	0.70	0.79	2.64	52736	3604	8	0	4	0	25460	logfile
✔	8HDS	34679	2023-09-27	2022-11-06	3.57	3.28	3.59	3.4	0.007	1.11	0.0	0.06	10.70	0.01	2.312	4.13	0.63	10.9	89.1	0.0	-6.20	0.55	0.77	2.49	3.4	0.004	0.71	0.0	0.04	16.09	0.00	2.083	10.70	0.96	9.7	90.3	0.0	-2.59	1.26	0.56	0.78	1.67	53532	6864	24	0	0	0	0	logfile
✔	7N5F	24188	2023-09-27	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.57	0.0	0.04	17.55	0.00	2.307	7.74	1.59	1.6	98.4	0.0	2.51	0.79	0.36	0.78	3.13	3037	386	1	0	1	0	0	logfile
✔	7Y7Y	33674	2023-09-27	2022-06-22	2.4	2.62	2.37	2.6	0.006	0.73	0.0	0.07	17.14	0.00	1.789	6.02	0.45	3.0	97.0	0.0	0.29	0.72	0.87	3.50	2.6	0.003	0.57	0.0	0.04	16.60	0.00	2.148	6.02	2.68	1.7	98.3	0.0	0.96	0.41	0.71	0.88	3.46	4303	527	1	0	7	54	0	logfile
✔	7KU5	23034	2023-09-27	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	3.9	0.002	0.72	0.0	0.04	15.66	0.01	2.252	10.89	0.00	9.3	90.7	0.0	-1.34	1.18	0.24	0.69	2.46	750	88	1	0	4	0	0	logfile
✔	8DT3	27690	2023-09-27	2022-07-25	3.3	3.99	3.55	3.7	0.004	0.67	0.0	0.04	13.45	0.00	2.125	10.67	0.00	8.2	91.8	0.0	-0.65	0.78	0.83	2.90	3.7	0.004	0.66	0.0	0.05	15.28	0.00	2.083	12.94	0.00	8.0	92.0	0.0	-0.49	0.39	0.79	0.85	2.73	3821	485	4	0	3	0	0	logfile
✔	8EFP	28087	2023-09-27	2022-09-08	3.8	4.73	3.90	4.0	0.006	1.46	7.0	0.09	18.61	0.01	1.908	33.65	3.07	13.3	86.7	0.0	-4.26	0.82	0.62	-0.42	4.0	0.003	0.86	0.0	0.04	18.75	0.00	2.083	23.79	0.38	9.6	90.4	0.0	-2.53	0.88	0.84	0.73	-0.29	4705	594	2	0	0	0	0	logfile
✔	6Y97	10733	2023-09-27	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.17	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.003	0.70	0.0	0.04	13.33	0.00	2.077	12.75	0.00	7.2	92.8	0.0	0.76	1.20	0.71	0.71	—	4366	564	4	0	0	0	0	logfile
✔	6X2Z	22014	2023-09-27	2020-05-21	3.03	3.18	—	3.2	0.005	0.84	0.0	0.05	15.51	0.01	2.131	6.52	0.00	3.6	96.4	0.0	-5.65	0.44	0.86	2.63	3.2	0.003	0.67	0.0	0.04	16.15	0.00	2.195	9.40	0.28	2.9	97.1	0.0	0.74	0.96	0.44	0.87	2.26	3205	420	1	0	3	0	0	logfile
✔	3JBS	6478	2023-09-27	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.003	0.61	0.0	0.04	18.11	0.00	2.225	5.17	3.95	1.7	98.3	0.0	0.99	1.75	0.21	0.81	3.63	1401	175	1	0	0	0	0	logfile
✔	7YNi	33962	2023-09-27	2022-07-31	3.26	3.56	3.00	3.6	0.005	0.66	0.0	0.04	10.99	0.01	2.206	19.26	0.00	5.0	94.5	0.5	0.78	0.44	0.69	1.96	3.6	0.004	0.68	0.0	0.04	13.96	0.01	2.229	12.72	0.00	4.8	94.8	0.3	1.03	0.93	0.49	0.73	1.44	4387	594	3	0	1	0	0	logfile
✔	7UUZ	26807	2023-09-27	2022-04-29	3.2	3.25	1.51	3.2	0.006	0.57	0.0	0.04	13.36	0.00	2.186	5.97	0.51	5.9	94.1	0.0	1.14	0.62	0.78	2.69	3.2	0.004	0.65	0.0	0.04	15.14	0.00	2.210	10.00	0.25	5.5	94.5	0.0	1.03	1.12	0.60	0.79	2.16	3786	501	1	0	3	0	0	logfile
✔	8CSY	26975	2023-09-27	2022-05-13	2.7	2.51	2.69	2.6	0.003	0.56	0.0	0.04	14.36	0.00	2.224	4.67	4.06	1.6	98.4	0.0	1.07	0.63	0.86	4.96	2.6	0.003	0.54	0.0	0.04	17.50	0.00	2.137	6.84	2.03	1.6	98.4	0.0	1.15	0.81	0.63	0.87	4.32	4638	584	4	0	0	19	0	logfile
✔	7CKR	30391	2023-09-27	2020-07-18	3.0	3.32	—	3.4	0.009	1.22	9.0	0.09	17.22	0.01	1.896	18.09	11.04	8.0	91.9	0.2	-2.89	0.45	0.60	2.22	3.3	0.003	0.78	0.0	0.05	17.05	0.01	2.178	14.60	3.58	4.1	95.9	0.0	0.75	1.85	0.53	0.73	1.92	4094	597	3	0	1	0	0	logfile
✘	8DLY	27520	2023-09-27	2022-07-08	3.0	3.63	2.92	3.6	0.005	0.94	0.0	0.06	12.37	0.01	2.317	1.86	0.37	3.5	96.5	0.0	-1.46	0.63	0.81	3.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2483	314	3	0	1	0	0	logfile
✔	7CKo	30389	2023-09-27	2020-07-18	2.95	3.28	—	3.3	0.012	1.32	10.0	0.13	16.64	0.01	1.964	11.96	12.88	9.1	90.8	0.2	-2.69	0.47	0.62	2.15	3.3	0.004	0.84	0.0	0.04	16.28	0.01	2.084	9.99	4.29	5.0	95.0	0.0	-0.14	2.24	0.47	0.70	1.77	4029	591	3	0	1	0	0	logfile
✔	7UAQ	26430	2023-09-27	2022-03-13	3.1	3.91	2.90	3.7	0.006	1.19	2.0	0.07	12.79	0.01	2.101	25.20	0.22	11.5	88.5	0.0	-2.56	0.57	0.74	2.32	3.7	0.004	0.86	0.0	0.05	15.30	0.01	2.192	16.76	0.65	10.3	89.7	0.0	-2.20	1.27	0.57	0.78	2.09	4362	533	8	0	10	0	0	logfile
✔	7DA5	30623	2023-09-27	2020-10-14	3.3	3.66	—	3.8	0.008	1.21	10.0	0.09	16.47	0.01	1.673	16.04	10.06	9.1	90.6	0.3	-3.63	0.43	0.58	1.81	3.7	0.004	0.78	0.0	0.04	16.11	0.00	2.233	8.41	0.91	5.1	94.9	0.0	0.00	1.49	0.49	0.71	2.09	4013	591	2	0	0	0	0	logfile
✔	8HND	34911	2023-09-27	2022-12-07	3.19	3.62	3.32	3.6	0.008	1.22	4.0	0.07	12.21	0.02	2.231	14.77	0.65	4.5	95.5	0.0	-2.74	0.50	0.73	2.07	3.6	0.004	0.63	0.0	0.04	14.97	0.00	2.206	7.90	0.00	3.6	96.4	0.0	1.02	1.07	0.44	0.69	1.97	4370	560	3	0	4	0	0	logfile

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