Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VEC	21155	2022-07-02	2019-12-31	3.9	3.99	—	3.9	0.008	1.02	0.0	0.05	10.32	0.01	1.923	3.67	0.95	7.2	92.3	0.5	-3.21	0.79	0.82	2.06	3.8	0.004	0.70	0.0	0.04	13.16	0.00	1.941	10.00	0.19	5.8	93.9	0.3	0.10	1.64	0.80	0.87	1.64	53064	6721	33	0	22	0	0	logfile
✔	6X2Z	22014	2022-07-02	2020-05-21	3.03	3.18	—	3.2	0.005	0.84	0.0	0.05	15.51	0.01	2.131	6.52	0.00	3.6	96.4	0.0	-5.65	0.44	0.86	2.63	3.2	0.003	0.68	0.0	0.04	16.16	0.01	2.184	10.16	0.28	3.1	96.9	0.0	0.65	0.95	0.45	0.87	2.16	3205	420	1	0	3	0	0	logfile
✔	6W6M	21559	2022-07-02	2020-03-17	2.7	2.83	2.64	2.8	0.008	1.02	14.0	0.06	12.30	0.01	1.953	13.25	2.97	7.8	92.2	0.0	-3.02	0.62	0.73	2.71	2.8	0.004	0.76	0.0	0.05	14.72	0.01	2.138	6.36	3.11	5.9	94.1	0.0	-1.21	1.69	0.73	0.82	2.52	43638	5768	14	0	0	0	0	logfile
✔	6W1N	21513	2022-07-02	2020-03-04	4.0	4.43	4.16	4.1	0.002	0.55	0.0	0.04	12.17	0.00	2.226	6.56	0.41	1.4	98.6	0.0	-0.42	0.72	0.75	—	4.1	0.003	0.77	0.0	0.04	14.18	0.00	2.104	12.19	0.22	3.1	96.9	0.0	0.83	0.77	0.74	0.80	—	105232	13984	12	0	1320	0	0	logfile
✔	6ZS5	11388	2022-07-02	2020-07-15	3.5	4.02	3.66	3.8	0.008	1.01	1.0	0.06	15.42	0.01	2.202	4.52	0.00	4.7	95.3	0.0	-2.98	0.67	0.80	2.81	3.9	0.003	0.71	0.0	0.04	16.58	0.00	2.239	9.05	0.93	3.2	96.8	0.0	-1.66	2.34	0.67	0.79	2.65	2036	257	4	0	7	0	0	logfile
✔	7JZU	22574	2022-07-02	2020-09-02	3.1	3.26	3.10	3.3	0.015	1.33	0.0	0.08	9.63	0.01	2.509	0.78	0.00	3.3	96.7	0.0	0.23	0.69	0.76	4.15	3.3	0.003	0.59	0.0	0.04	14.23	0.00	2.252	5.19	0.00	3.3	96.7	0.0	0.46	1.61	0.69	0.80	4.31	1987	248	3	0	3	0	0	logfile
✔	7LXW	23577	2022-07-02	2021-03-05	2.8	3.13	2.86	3.2	0.012	1.20	0.0	0.07	10.03	0.01	2.593	0.61	0.00	1.3	98.7	0.0	0.97	0.78	0.81	5.37	3.2	0.004	0.65	0.0	0.05	15.02	0.01	2.225	10.77	1.52	1.7	98.3	0.0	0.44	1.17	0.72	0.82	5.04	2524	317	5	0	5	0	0	logfile
✔	6WKT	21708	2022-07-02	2020-04-16	3.4	3.21	3.09	3.3	0.004	0.81	0.0	0.05	13.97	0.01	2.329	0.65	0.00	1.9	98.1	0.0	-3.42	0.65	0.75	3.69	3.3	0.003	0.59	0.0	0.03	15.90	0.00	2.202	11.45	0.00	4.8	95.2	0.0	3.63	1.34	0.65	0.75	3.76	3152	424	4	0	0	0	0	logfile
✔	7C1D	30269	2022-07-02	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	18.87	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.004	0.69	0.0	0.05	14.90	0.00	2.239	18.63	0.52	24.5	75.5	0.0	-4.57	2.82	0.39	0.75	2.42	2034	306	6	0	0	0	0	logfile
✔	7E23	30950	2022-07-02	2021-02-04	3.3	3.62	—	3.6	0.004	0.82	0.0	0.05	14.42	0.01	2.123	14.37	0.00	17.3	82.7	0.0	-3.70	0.70	0.77	2.78	3.6	0.011	1.49	0.0	0.05	16.45	0.01	2.152	14.70	0.30	15.5	84.5	0.0	-3.10	1.12	0.70	0.79	2.23	3133	403	4	0	1	0	0	logfile
✘	7BC5	12139	2022-07-02	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1200	161	1	0	0	0	0	logfile
✔	7CYH	30500	2022-07-02	2020-09-03	3.9	4.13	—	4.1	0.011	1.18	0.0	0.06	9.76	0.01	2.087	28.64	0.87	9.8	89.7	0.5	-4.10	0.51	0.61	2.53	4.1	0.005	0.94	0.0	0.05	14.19	0.01	2.099	16.30	0.58	9.4	89.9	0.7	-2.14	1.06	0.57	0.76	1.64	3241	423	3	0	0	0	0	logfile
✔	7oG6	12879	2022-07-02	2021-05-06	3.3	3.47	—	2.9	0.008	0.82	0.0	0.04	17.33	0.01	2.325	7.36	6.10	9.6	90.4	0.0	-4.47	0.28	0.82	2.77	2.9	0.003	0.58	0.0	0.04	16.44	0.00	2.233	9.92	0.00	6.6	93.4	0.0	-0.04	0.54	0.27	0.84	3.04	1602	199	2	5	0	0	0	logfile
✘	7oDR	12845	2022-07-02	2021-04-30	2.9	3.11	—	3.0	0.002	0.40	0.0	0.03	11.06	0.00	1.208	5.13	0.44	1.1	98.9	0.0	0.96	0.74	0.80	3.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	107464	9244	68	1489	135	0	0	logfile
✔	7E39	30977	2022-07-02	2021-02-08	3.7	3.11	—	2.9	0.005	0.76	0.0	0.05	14.34	0.01	2.130	15.98	0.00	10.1	89.9	0.0	-3.52	0.50	0.74	2.30	2.9	0.003	0.65	0.0	0.05	15.89	0.00	2.161	11.51	0.00	6.2	93.8	0.0	-2.43	0.42	0.50	0.74	2.23	3074	414	4	0	1	0	0	logfile
✔	7M62	23687	2022-07-02	2021-03-25	3.9	3.91	—	4.3	0.007	1.13	0.0	0.07	14.83	0.00	2.321	32.83	0.00	23.3	76.7	0.0	-4.97	0.55	0.62	2.27	4.3	0.003	0.99	0.0	0.05	15.87	0.00	2.105	21.17	0.00	22.7	77.3	0.0	-4.56	2.11	0.57	0.65	3.17	2380	320	10	0	10	0	0	logfile
✔	7M64	23688	2022-07-02	2021-03-25	4.0	4.02	—	4.3	0.008	1.15	0.0	0.07	10.07	0.00	2.451	19.77	0.00	8.7	91.3	0.0	-3.84	0.52	0.75	—	4.3	0.003	0.90	0.0	0.04	11.30	0.00	2.242	6.78	0.00	5.2	94.8	0.0	-4.00	1.14	0.51	0.74	—	1850	250	10	0	10	0	0	logfile
✔	7M61	23686	2022-07-02	2021-03-25	3.8	3.83	—	4.1	0.005	1.01	0.0	0.08	12.79	0.00	2.218	23.57	0.00	14.3	85.7	0.0	-4.63	0.49	0.73	2.45	3.9	0.004	0.78	0.0	0.05	14.97	0.00	2.122	21.71	1.03	14.8	85.2	0.0	-4.62	0.86	0.47	0.75	2.83	1690	230	10	0	10	0	0	logfile
✔	7VV0	32133	2022-07-02	2021-11-04	3.5	3.69	—	3.7	0.010	1.49	1.0	0.09	14.09	0.01	2.007	11.04	2.93	4.5	95.5	0.0	-3.44	0.65	0.80	1.76	3.7	0.003	0.61	0.0	0.04	15.15	0.00	2.257	7.66	0.84	4.2	95.8	0.0	2.03	1.25	0.64	0.80	1.65	2175	268	2	0	1	0	0	logfile
✔	7VV4	32137	2022-07-02	2021-11-04	2.97	3.66	—	3.7	0.007	1.20	2.0	0.09	14.57	0.01	1.600	16.21	3.75	4.2	95.8	0.0	-0.53	0.64	0.78	2.05	3.7	0.003	0.71	0.0	0.04	16.91	0.00	2.171	10.81	1.67	1.9	97.7	0.4	2.21	0.61	0.59	0.77	1.02	2181	269	3	0	1	0	0	logfile

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