Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7C99	30309	2021-08-07	2020-06-05	3.36	3.44	—	3.5	0.006	0.89	0.0	0.05	16.02	0.00	1.776	9.93	0.00	6.0	94.0	0.0	-5.91	0.50	0.85	3.07	3.5	0.004	0.61	0.0	0.04	18.25	0.00	2.190	6.05	0.26	6.7	93.3	0.0	-2.69	2.00	0.51	0.87	2.87	7656	927	8	18	6	0	0	logfile
✔	7C9A	30310	2021-08-07	2020-06-05	3.43	3.55	—	3.6	0.005	0.89	0.0	0.05	17.52	0.01	1.965	8.39	0.00	4.9	95.1	0.0	-4.96	0.48	0.87	3.13	3.6	0.005	0.65	0.0	0.04	18.87	0.00	2.129	5.86	0.54	5.1	94.9	0.0	-0.39	1.35	0.48	0.89	2.53	7590	933	7	18	6	0	0	logfile
✔	7K0L	22601	2021-08-07	2020-09-04	3.4	3.83	—	3.7	0.004	0.69	0.0	0.04	12.60	0.00	2.141	4.28	0.00	1.9	98.1	0.0	1.09	0.74	0.87	3.05	3.7	0.003	0.50	0.0	0.04	13.98	0.00	2.210	5.00	0.12	2.0	98.0	0.0	1.00	1.05	0.74	0.88	2.61	7619	964	4	0	2	0	0	logfile
✔	7K0Q	22608	2021-08-07	2020-09-04	3.3	3.61	—	3.5	0.007	0.77	0.0	0.05	12.67	0.00	2.116	5.13	0.00	3.3	96.7	0.0	0.45	0.70	0.85	3.35	3.5	0.003	0.54	0.0	0.04	14.40	0.00	2.183	4.67	0.21	2.7	97.3	0.0	1.07	1.46	0.73	0.86	2.76	8778	1107	5	0	2	0	0	logfile
✔	7KMB	22922	2021-08-07	2020-11-02	3.39	3.84	3.64	3.7	0.003	0.72	0.0	0.05	14.85	0.00	2.298	3.78	0.00	4.8	95.2	0.0	-3.57	0.77	0.80	1.91	3.7	0.011	1.08	0.0	0.04	16.35	0.00	2.133	10.16	0.72	4.7	95.3	0.0	-0.44	1.14	0.79	0.83	1.74	6509	788	5	0	9	0	0	logfile
✔	7JLU	22380	2021-08-07	2020-07-30	3.8	3.27	—	3.8	0.003	0.78	0.0	0.05	16.63	0.00	2.187	11.55	0.21	9.3	90.7	0.0	-1.56	0.74	0.78	1.46	3.8	0.004	0.70	0.0	0.04	17.79	0.00	2.141	11.43	0.42	10.1	89.9	0.0	-1.84	0.43	0.74	0.80	1.80	8592	1079	2	0	1	0	0	logfile
✔	7CRB	30449	2021-08-07	2020-08-13	3.16	3.51	—	3.4	0.005	0.81	2.0	0.05	13.84	0.00	2.288	8.58	0.77	8.8	91.2	0.0	-2.29	0.75	0.82	3.00	3.4	0.004	0.65	0.0	0.04	15.53	0.00	2.269	9.68	0.51	7.9	92.1	0.0	-1.08	1.17	0.74	0.82	2.62	6806	851	2	0	0	0	0	logfile
✔	7JZM	22533	2021-08-07	2020-09-02	3.5	3.74	3.50	3.7	0.015	1.37	0.0	0.08	9.25	0.01	2.420	0.76	0.00	2.0	98.0	0.0	0.75	0.75	0.78	4.01	3.7	0.003	0.65	0.0	0.04	14.77	0.00	2.193	8.12	0.00	2.4	97.6	0.0	0.55	1.27	0.76	0.79	2.82	2033	258	3	0	3	0	0	logfile
✔	6WKY	21813	2021-08-07	2020-04-17	4.2	4.29	—	4.1	0.006	0.74	0.0	0.05	16.88	0.00	2.366	8.91	0.00	0.6	99.4	0.0	-5.20	0.76	0.88	—	4.2	0.004	0.95	0.0	0.05	15.71	0.00	2.311	18.73	0.00	0.0	100.0	0.0	-1.69	3.29	0.75	0.86	—	9140	1160	40	0	0	0	0	logfile
✔	6VP9	21307	2021-08-07	2020-02-02	3.46	3.63	—	3.6	0.008	0.73	0.0	0.04	15.50	0.01	2.032	21.68	0.00	9.4	90.6	0.0	-3.63	0.77	0.86	1.78	3.6	0.009	1.13	0.0	0.04	16.97	0.01	2.159	9.69	0.00	6.3	93.7	0.0	-0.58	0.45	0.77	0.86	1.32	8610	1077	4	0	1	0	0	logfile
✔	7JR9	22444	2021-08-07	2020-08-11	2.95	3.21	—	3.1	0.008	0.82	0.0	0.05	8.26	0.01	2.235	4.11	0.00	3.1	96.9	0.0	-2.53	0.84	0.89	5.25	3.1	0.002	0.52	0.0	0.04	13.28	0.00	2.182	6.34	0.78	2.2	97.8	0.0	0.74	0.60	0.85	0.90	4.59	10021	1300	7	0	14	0	0	logfile
✔	7KFZ	22857	2021-08-07	2020-10-15	3.47	4.45	3.43	3.9	0.012	0.76	0.0	0.05	13.43	0.00	1.897	8.91	0.00	3.8	96.2	0.0	-1.10	0.86	0.78	2.74	3.9	0.006	0.63	0.0	0.04	14.14	0.00	1.927	9.29	0.14	2.1	97.9	0.0	2.41	0.53	0.94	0.89	2.75	6592	803	3	0	2	0	0	logfile
✔	6XMP	22260	2021-08-07	2020-06-30	3.5	4.29	3.63	4.0	0.005	0.54	0.0	0.04	13.08	0.00	2.192	6.56	0.00	2.9	97.1	0.0	-1.66	0.72	0.84	1.55	4.0	0.004	0.56	0.0	0.04	14.37	0.00	2.155	6.91	0.11	3.8	96.2	0.0	1.05	0.36	0.71	0.86	1.30	8545	1086	1	0	12	0	0	logfile
✔	6XMQ	22261	2021-08-07	2020-06-30	3.7	4.26	3.79	4.0	0.006	0.64	0.0	0.04	12.85	0.00	1.660	6.05	0.00	3.7	96.3	0.0	-1.63	0.72	0.85	1.50	4.0	0.004	0.60	0.0	0.04	15.16	0.00	2.004	7.31	0.00	4.1	95.9	0.0	0.53	1.29	0.73	0.86	1.28	8362	1085	1	0	2	0	0	logfile
✔	7DCR	30640	2021-08-07	2020-10-26	3.15	3.27	—	3.2	0.005	0.91	1.0	0.06	10.49	0.01	2.260	4.10	0.63	3.0	96.7	0.3	-4.71	0.66	0.78	3.15	3.2	0.003	0.64	0.0	0.04	14.36	0.00	2.144	7.94	0.47	3.9	96.1	0.0	0.50	0.71	0.68	0.81	2.34	5653	711	2	0	0	0	0	logfile
✔	7L1V	23119	2021-08-07	2020-12-15	3.0	3.37	—	3.3	0.008	1.06	0.0	0.06	12.85	0.01	2.306	3.23	0.30	2.8	97.2	0.0	-2.91	0.71	0.86	4.16	3.3	0.005	0.68	0.0	0.04	15.62	0.00	2.215	7.26	2.02	2.7	97.3	0.0	0.38	0.95	0.73	0.88	3.34	9606	1253	7	0	1	0	0	logfile
✔	7CR2	30445	2021-08-07	2020-08-12	3.2	3.42	—	3.6	0.014	0.97	0.0	0.05	15.30	0.00	2.052	38.09	0.48	3.6	96.4	0.0	-2.81	0.58	0.80	2.35	3.6	0.003	0.57	0.0	0.04	16.43	0.00	2.255	7.56	0.36	2.2	97.8	0.0	2.19	0.75	0.57	0.79	2.01	8276	1004	8	0	4	0	0	logfile
✔	7CR0	30443	2021-08-07	2020-08-12	3.1	3.35	—	3.4	0.005	0.63	0.0	0.04	14.38	0.00	2.212	5.63	0.00	4.0	96.0	0.0	-4.99	0.58	0.81	3.75	3.4	0.002	0.59	0.0	0.03	16.02	0.00	2.237	5.75	0.71	2.7	97.3	0.0	3.43	0.81	0.59	0.81	2.57	8188	1004	4	0	0	0	0	logfile
✔	7ARL	11886	2021-08-07	2020-10-25	3.2	3.44	—	3.5	0.003	0.70	0.0	0.05	13.12	0.00	2.378	3.27	0.00	4.6	95.4	0.0	-5.83	0.62	0.73	0.86	3.4	0.004	0.76	0.0	0.04	15.90	0.00	2.075	8.55	0.31	5.4	94.6	0.0	-1.28	1.36	0.68	0.82	1.44	9467	1256	9	0	6	0	0	logfile
✔	7ADM	11731	2021-08-07	2020-09-15	3.5	3.77	3.57	3.8	0.013	1.98	3.0	0.11	15.37	0.02	2.582	0.00	0.73	11.9	88.1	0.0	-2.91	0.49	0.70	2.46	3.8	0.018	1.27	1.0	0.04	16.77	0.00	2.109	11.62	0.73	10.5	89.5	0.0	-1.59	0.98	0.50	0.71	2.34	9726	614	1	0	0	0	4799	logfile

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