Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WD8	32434	2022-07-03	2021-12-21	4.3	3.48	—	3.5	0.002	0.51	0.0	0.04	6.43	0.00	2.246	9.18	0.00	4.1	95.7	0.2	-0.96	0.60	0.61	—	3.5	0.004	0.77	0.0	0.05	12.47	0.01	2.178	15.72	0.00	6.8	93.0	0.2	-0.59	1.66	0.63	0.67	—	4029	524	4	0	0	0	0	logfile
✔	7MVV	24057	2022-07-05	2021-05-15	3.22	4.20	3.24	3.5	0.002	0.36	0.0	0.03	6.43	0.00	2.161	3.07	0.07	1.3	98.7	0.0	-0.66	0.88	0.76	0.50	3.6	0.003	0.52	0.0	0.03	11.12	0.00	2.027	7.30	0.07	3.4	96.6	0.0	2.79	0.96	0.90	0.82	1.13	25764	1609	4	0	0	0	12907	logfile
✔	6B19	7031	2022-07-03	2017-09-18	4.5	4.61	—	4.4	0.023	1.38	0.0	0.05	6.45	0.01	2.201	16.18	0.00	19.4	80.5	0.1	-5.73	0.74	0.63	—	4.4	0.003	0.87	0.0	0.04	13.09	0.00	1.943	28.42	0.00	24.5	75.5	0.0	-5.38	1.33	0.77	0.65	—	5699	907	4	38	0	0	409	logfile
✔	7TK0	25948	2022-07-04	2022-01-17	4.4	6.63	4.39	4.1	0.019	2.21	0.0	0.00	6.55	0.01	2.394	0.08	0.00	3.9	94.5	1.5	-0.40	0.58	0.62	—	4.1	0.004	0.83	0.0	0.00	5.40	0.00	2.153	9.44	0.00	10.9	88.8	0.3	-0.57	0.81	0.83	0.81	—	20220	5054	27	0	0	0	0	logfile
✔	7JG6	22312	2022-07-04	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.003	0.91	0.0	0.00	5.94	0.00	2.230	1.09	0.00	10.6	89.3	0.1	-1.07	1.66	0.70	0.68	—	19320	4819	20	0	11	0	0	logfile
✔	6QPi	4614	2022-07-02	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.002	0.44	0.0	0.04	4.28	0.00	2.462	1.49	0.00	2.8	97.2	0.0	2.25	1.20	0.41	0.62	—	2288	462	2	0	0	0	0	logfile
✔	7MVY	24058	2022-07-05	2021-05-15	2.39	3.24	1.97	3.1	0.002	0.39	0.0	0.03	6.61	0.00	2.209	3.31	0.00	0.7	99.3	0.0	-0.54	0.72	0.64	0.92	3.0	0.005	0.69	0.0	0.04	13.97	0.01	1.983	13.40	1.72	3.7	96.3	0.0	0.97	1.62	0.76	0.75	2.16	26555	1694	2	0	0	0	13337	logfile
✔	7TJZ	25947	2022-07-04	2022-01-17	4.4	7.00	4.54	4.2	0.019	2.21	0.0	0.00	6.67	0.01	2.384	0.19	0.00	4.2	94.2	1.6	-0.41	0.58	0.63	—	4.3	0.012	0.93	0.0	0.00	5.55	0.00	2.081	10.56	0.00	10.4	89.3	0.3	0.17	0.73	0.79	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	7TK8	25960	2022-07-04	2022-01-17	4.7	7.79	12.86	4.4	0.019	2.21	0.0	0.00	6.68	0.01	2.390	0.08	0.00	4.1	94.4	1.5	-0.46	0.60	0.61	—	4.4	0.008	1.17	0.0	0.00	6.80	0.01	1.933	31.40	0.00	11.8	87.8	0.4	-1.32	1.58	0.81	0.81	—	20227	5056	27	0	0	0	0	logfile
✔	7TKP	25977	2022-07-04	2022-01-17	4.6	7.57	4.97	4.4	0.019	2.20	0.0	0.00	6.68	0.01	2.352	0.12	0.00	4.2	94.5	1.3	-0.50	0.60	0.63	—	4.4	0.004	0.83	0.0	0.00	5.46	0.00	2.080	13.25	0.00	10.0	89.8	0.2	0.34	0.82	0.82	0.84	—	20228	5056	27	0	0	0	0	logfile
✔	6YW7	10960	2022-07-03	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	2.17	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	1.00	0.0	0.02	5.16	0.00	2.215	9.65	0.00	10.5	89.4	0.2	-3.99	6.44	0.82	0.75	—	5426	1788	9	0	2	0	0	logfile
✔	4UQ8	2676	2022-07-06	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	64.12	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.54	0.0	0.41	5.50	0.00	2.100	23.02	0.00	0.0	0.0	0.0	—	2.11	0.61	0.83	—	28647	33	54	0	5686	0	0	logfile
✔	7TKQ	25978	2022-07-04	2022-01-17	4.5	7.57	4.53	4.3	0.019	2.21	0.0	0.00	6.72	0.01	2.371	0.08	0.00	4.0	94.5	1.5	-0.48	0.59	0.61	—	4.3	0.006	0.92	0.0	0.00	6.22	0.00	2.038	17.45	0.00	11.2	88.5	0.3	-0.53	0.80	0.82	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	7TKo	25976	2022-07-04	2022-01-17	4.8	7.71	5.39	4.4	0.019	2.23	0.0	0.00	6.74	0.01	2.314	0.12	0.00	4.8	93.9	1.4	-0.54	0.62	0.65	—	4.4	0.018	1.36	0.0	0.00	7.58	0.01	1.972	30.28	0.00	15.9	83.8	0.3	-2.17	0.89	0.84	0.82	—	20229	5056	27	0	0	0	0	logfile
✔	7TJY	25946	2022-07-04	2022-01-17	3.8	4.84	3.78	3.6	0.020	2.29	0.0	0.00	6.75	0.01	2.333	0.12	0.00	4.3	94.3	1.5	-0.54	0.59	0.68	—	3.7	0.006	0.89	0.0	0.00	5.53	0.00	2.131	6.70	0.00	11.9	87.8	0.3	-0.26	1.48	0.84	0.80	—	20228	5056	27	0	0	0	0	logfile
✔	7RAK	24363	2022-07-03	2021-07-01	3.9	4.13	—	4.1	0.003	0.61	0.0	0.04	6.78	0.00	2.283	4.32	0.00	14.0	85.0	1.0	-3.87	0.62	0.61	0.78	4.1	0.004	0.70	0.0	0.04	12.14	0.00	2.229	8.54	0.35	6.5	93.3	0.2	-1.78	1.72	0.69	0.73	0.56	61296	8112	32	0	16	0	0	logfile
✔	7TKM	25974	2022-07-04	2022-01-17	4.5	7.58	4.88	4.3	0.019	2.22	0.0	0.00	6.78	0.01	2.385	0.12	0.00	4.3	94.2	1.5	-0.44	0.59	0.59	—	4.3	0.005	0.90	0.0	0.00	6.11	0.00	2.052	17.76	0.00	11.5	88.1	0.4	-1.22	1.55	0.83	0.81	—	20227	5056	27	0	0	0	0	logfile
✔	6PM5	20388	2022-07-04	2019-07-01	3.1	3.38	—	3.4	0.001	0.42	0.0	0.06	6.80	0.00	2.275	5.10	0.00	2.4	97.6	0.0	-4.42	0.52	0.78	3.48	3.4	0.003	0.65	0.0	0.04	14.29	0.00	2.238	7.72	0.41	3.2	96.8	0.0	-0.31	1.12	0.58	0.85	3.86	13975	1735	15	0	15	0	0	logfile
✔	3JCF	6551	2022-07-04	2015-12-11	3.8	4.02	—	3.9	0.004	1.03	0.0	0.04	6.81	0.00	2.057	8.41	0.00	4.6	95.4	0.0	-1.63	0.74	0.81	2.11	3.9	0.003	0.66	0.0	0.04	12.69	0.00	1.975	12.25	0.13	3.6	96.4	0.0	1.83	0.69	0.74	0.85	1.74	14228	1745	10	0	13	0	0	logfile
✔	7WK8	32562	2022-07-03	2022-01-08	3.61	2.50	—	2.3	0.002	0.52	0.0	0.04	6.81	0.00	2.270	7.76	0.00	4.5	95.3	0.2	-1.21	0.77	0.74	4.09	2.3	0.003	0.62	0.0	0.04	13.24	0.01	2.165	10.55	0.00	3.0	96.9	0.2	0.47	1.28	0.79	0.78	3.76	3982	516	4	0	0	0	0	logfile

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