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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6RWE | 10038 | 2022-12-11 | 2019-06-04 | 3.0 | 3.12 | — | 3.7 | 0.009 | 1.02 | 1.0 | 0.06 | 13.12 | 0.01 | 1.975 | 6.40 | 0.73 | 7.4 | 92.5 | 0.1 | -4.84 | 0.44 | 0.32 | 0.00 | 3.1 | 0.004 | 0.80 | 0.0 | 0.05 | 18.30 | 0.00 | 2.038 | 13.99 | 2.31 | 5.9 | 94.1 | 0.0 | -1.29 | 1.56 | 0.75 | 0.80 | 1.57 | 53719 | 6454 | 26 | 95 | 8 | 0 | 0 | logfile |
✘ | 6RBE | 4794 | 2022-12-19 | 2019-04-10 | 3.8 | 4.03 | 3.73 | 40.0 | 0.007 | 1.27 | 0.0 | 0.06 | 18.44 | 0.01 | 2.076 | 9.23 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.25 | 0.02 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✔ | 7TR9 | 26083 | 2022-12-18 | 2022-01-28 | 3.9 | 4.30 | — | 4.1 | 0.003 | 0.68 | 2.0 | 0.05 | 13.00 | 0.00 | 1.387 | 16.29 | 0.17 | 8.7 | 90.9 | 0.4 | -2.44 | 0.80 | 0.72 | 0.00 | 4.0 | 0.003 | 0.79 | 0.0 | 0.05 | 15.86 | 0.00 | 1.168 | 25.43 | 0.41 | 9.0 | 90.8 | 0.3 | -2.23 | 2.93 | 0.82 | 0.77 | 0.52 | 34208 | 4192 | 20 | 75 | 2 | 0 | 0 | logfile |
✔ | 6CRZ | 7577 | 2022-12-15 | 2018-03-19 | 3.3 | 3.42 | 3.35 | 4.5 | 0.007 | 0.96 | 0.0 | 0.06 | 9.21 | 0.01 | 2.254 | 6.85 | 0.04 | 7.8 | 92.2 | 0.0 | -4.10 | 0.39 | 0.17 | 0.01 | 3.4 | 0.004 | 0.74 | 0.0 | 0.05 | 13.55 | 0.01 | 2.094 | 13.15 | 0.36 | 6.7 | 93.3 | 0.0 | -1.76 | 1.51 | 0.62 | 0.60 | 0.91 | 25909 | 3205 | 25 | 0 | 66 | 0 | 0 | logfile |
✔ | 6QYM | 4679 | 2022-12-15 | 2019-03-09 | 3.6 | 3.25 | — | 4.0 | 0.007 | 0.89 | 0.0 | 0.05 | 9.66 | 0.01 | 2.201 | 9.00 | 0.00 | 6.5 | 93.5 | 0.0 | -4.63 | 0.62 | 0.60 | 0.02 | 3.5 | 0.004 | 0.91 | 0.0 | 0.05 | 17.40 | 0.00 | 2.103 | 24.96 | 0.85 | 4.7 | 95.3 | 0.0 | -0.54 | 1.92 | 0.69 | 0.67 | -0.04 | 26880 | 3360 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TZ4 | 20588 | 2022-12-19 | 2019-08-10 | 3.2 | 3.81 | 3.16 | 3.7 | 0.010 | 0.48 | 0.0 | 0.04 | 8.47 | 0.00 | 2.212 | 3.95 | 0.00 | 1.4 | 98.6 | 0.0 | -0.10 | 0.51 | 0.57 | 0.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 99216 | 12852 | 72 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LTJ | 0974 | 2022-12-18 | 2020-01-22 | 3.7 | 4.16 | — | 15.0 | 0.010 | 1.08 | 12.0 | 0.07 | 22.08 | 0.01 | 2.173 | 14.06 | 2.63 | 6.4 | 93.3 | 0.3 | -3.67 | 0.46 | 0.08 | 0.04 | 10.0 | 0.003 | 0.75 | 0.0 | 0.04 | 22.18 | 0.00 | 2.125 | 17.36 | 0.22 | 3.7 | 96.3 | 0.0 | 0.01 | 1.54 | 0.58 | 0.25 | 0.32 | 34283 | 3656 | 21 | 238 | 1 | 0 | 0 | logfile |
✔ | 7S8V | 24927 | 2022-12-12 | 2021-09-20 | 3.73 | 4.42 | — | 3.9 | 0.003 | 0.60 | 0.0 | 0.09 | 12.33 | 0.00 | 2.098 | 5.69 | 0.14 | 7.0 | 93.0 | 0.0 | -3.48 | 0.68 | 0.64 | 0.04 | 3.9 | 0.004 | 0.68 | 0.0 | 0.04 | 14.22 | 0.01 | 1.959 | 16.92 | 0.00 | 10.4 | 89.6 | 0.0 | -2.27 | 1.59 | 0.70 | 0.71 | 0.57 | 12502 | 782 | 7 | 0 | 12 | 0 | 6045 | logfile |
✔ | 6XSS | 22305 | 2022-12-11 | 2020-07-16 | 3.7 | 3.37 | — | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 12.31 | 0.00 | 1.843 | 28.34 | 0.00 | 2.5 | 97.5 | 0.0 | -0.32 | 0.74 | 0.78 | 0.04 | 3.3 | 0.003 | 0.80 | 0.0 | 0.04 | 16.91 | 0.00 | 2.278 | 17.30 | 0.24 | 1.0 | 99.0 | 0.0 | 2.54 | 1.34 | 0.75 | 0.79 | 0.21 | 8048 | 1040 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6K9F | 9948 | 2022-12-13 | 2019-06-15 | 3.7 | 7.50 | 4.15 | 7.2 | 0.002 | 0.45 | 0.0 | 0.03 | 11.87 | 0.00 | 2.356 | 5.29 | 0.00 | 0.0 | 100.0 | 0.0 | -0.68 | 0.66 | 0.76 | 0.04 | 4.6 | 0.004 | 1.16 | 0.0 | 0.05 | 17.89 | 0.00 | 2.058 | 27.39 | 0.42 | 1.2 | 98.8 | 0.0 | -0.22 | 3.70 | 0.67 | 0.84 | 0.57 | 8484 | 1044 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 8GWA | 34307 | 2022-12-20 | 2022-09-16 | 2.9 | 3.13 | 3.01 | 7.0 | 0.017 | 1.77 | 0.0 | 0.16 | 16.93 | 0.02 | 1.107 | 14.98 | 0.00 | 5.7 | 94.2 | 0.2 | -1.01 | 0.17 | -0.02 | 0.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37660 | 4006 | 27 | 0 | 160 | 0 | 0 | logfile |
✔ | 6F1V | 4170 | 2022-12-11 | 2017-11-23 | 3.4 | 4.10 | — | 3.7 | 0.014 | 1.86 | 0.0 | 0.09 | 11.72 | 0.01 | 2.246 | 13.29 | 0.18 | 11.1 | 88.7 | 0.2 | -3.46 | 0.46 | 0.69 | 0.05 | 3.7 | 0.003 | 0.71 | 0.0 | 0.04 | 15.64 | 0.00 | 2.200 | 14.64 | 0.18 | 5.9 | 94.1 | 0.0 | 1.12 | 1.71 | 0.48 | 0.75 | 0.47 | 5164 | 628 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6J5T | 0680 | 2022-12-19 | 2019-01-12 | 3.4 | 3.94 | — | 3.0 | 0.009 | 1.20 | 0.0 | 0.07 | 11.49 | 0.01 | 1.182 | 7.10 | 0.59 | 11.3 | 88.4 | 0.3 | -4.25 | 0.83 | 0.67 | 0.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53488 | 6640 | 25 | 0 | 15 | 0 | 0 | logfile |
✔ | 6N1i | 8903 | 2022-12-12 | 2018-11-08 | 3.58 | 3.63 | — | 3.6 | 0.009 | 1.13 | 0.0 | 0.06 | 9.87 | 0.01 | 1.147 | 27.10 | 0.00 | 2.4 | 97.6 | 0.0 | -6.04 | 0.42 | 0.58 | 0.05 | 3.6 | 0.003 | 0.78 | 0.0 | 0.04 | 17.63 | 0.00 | 2.236 | 15.98 | 0.87 | 4.5 | 95.5 | 0.0 | -0.33 | 2.36 | 0.57 | 0.82 | 1.93 | 11136 | 1360 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Q2o | 20576 | 2022-12-13 | 2019-08-08 | 3.65 | 3.77 | — | 3.9 | 0.004 | 0.77 | 0.0 | 0.05 | 8.38 | 0.01 | 1.534 | 3.25 | 0.12 | 5.6 | 94.4 | 0.0 | -3.75 | 0.48 | 0.23 | 0.05 | 3.6 | 0.005 | 0.89 | 0.0 | 0.05 | 14.72 | 0.01 | 2.099 | 18.48 | 1.20 | 7.7 | 92.3 | 0.0 | -1.96 | 2.05 | 0.68 | 0.65 | 0.76 | 15196 | 1900 | 8 | 0 | 20 | 0 | 0 | logfile |
✔ | 6RUo | 10007 | 2022-12-22 | 2019-05-28 | 3.5 | 3.56 | — | 4.0 | 0.007 | 1.05 | 0.0 | 0.06 | 13.11 | 0.01 | 2.170 | 8.06 | 0.40 | 10.5 | 89.4 | 0.1 | -4.99 | 0.53 | 0.29 | 0.05 | 3.5 | 0.004 | 0.81 | 0.0 | 0.05 | 17.45 | 0.00 | 2.062 | 19.29 | 0.53 | 8.4 | 91.6 | 0.0 | -2.64 | 2.43 | 0.68 | 0.60 | 0.65 | 50792 | 6086 | 26 | 93 | 8 | 0 | 0 | logfile |
✔ | 6N1H | 8902 | 2022-12-12 | 2018-11-08 | 3.17 | 3.22 | — | 3.2 | 0.006 | 1.13 | 0.0 | 0.06 | 12.23 | 0.01 | 0.657 | 32.07 | 3.97 | 7.4 | 92.6 | 0.0 | -7.22 | 0.39 | 0.46 | 0.05 | 3.2 | 0.003 | 0.68 | 0.0 | 0.04 | 17.82 | 0.00 | 2.142 | 10.27 | 2.79 | 6.7 | 93.3 | 0.0 | 0.79 | 4.74 | 0.62 | 0.84 | 1.69 | 10991 | 1328 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6o81 | 0649 | 2022-12-18 | 2019-03-08 | 3.21 | 3.63 | — | 3.5 | 0.004 | 0.71 | 0.0 | 0.14 | 11.98 | 0.01 | 2.285 | 4.78 | 0.34 | 4.5 | 95.5 | 0.0 | -4.06 | 0.69 | 0.65 | 0.06 | 3.5 | 0.008 | 0.80 | 0.0 | 0.05 | 14.66 | 0.00 | 2.065 | 11.37 | 0.60 | 7.0 | 93.0 | 0.0 | -0.48 | 1.10 | 0.75 | 0.85 | 2.61 | 33693 | 4949 | 17 | 0 | 29 | 0 | 0 | logfile |
✔ | 6NEQ | 9358 | 2022-12-13 | 2018-12-18 | 3.32 | 3.85 | — | 3.5 | 0.001 | 0.37 | 0.0 | 0.03 | 12.81 | 0.00 | 1.949 | 3.35 | 0.35 | 10.3 | 88.1 | 1.6 | -2.42 | 0.69 | 0.51 | 0.07 | 3.5 | 0.004 | 0.70 | 0.0 | 0.04 | 16.37 | 0.00 | 2.024 | 14.12 | 0.48 | 6.2 | 93.8 | 0.1 | -0.36 | 2.04 | 0.85 | 0.85 | 1.51 | 65776 | 5509 | 32 | 952 | 147 | 0 | 0 | logfile |
✔ | 6QS6 | 4624 | 2022-12-16 | 2019-02-20 | 3.9 | 4.03 | 2.44 | 4.0 | 0.011 | 1.09 | 0.0 | 0.06 | 10.53 | 0.01 | 2.187 | 6.85 | 0.07 | 8.2 | 91.8 | 0.0 | -4.07 | 0.57 | 0.46 | 0.09 | 3.9 | 0.004 | 0.86 | 0.0 | 0.05 | 16.70 | 0.00 | 2.076 | 21.09 | 0.71 | 5.1 | 94.9 | 0.0 | -0.72 | 1.39 | 0.75 | 0.78 | 0.89 | 28557 | 3568 | 13 | 0 | 35 | 0 | 0 | logfile |