Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RTV	24690	2023-04-19	2021-08-15	3.96	4.06	—	4.1	0.004	0.76	0.0	0.05	14.21	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.91	0.0	0.04	16.58	0.00	2.168	18.02	0.32	3.3	96.7	0.0	2.73	1.76	0.41	0.64	0.28	2881	366	3	0	6	0	0	logfile
✔	7TAX	25789	2023-04-28	2021-12-21	2.8	3.31	—	3.3	0.003	0.67	0.0	0.04	15.14	0.01	2.236	6.32	0.00	4.6	95.4	0.0	-0.99	0.64	0.56	0.11	3.2	0.005	0.72	0.0	0.04	17.78	0.00	2.116	12.92	2.45	5.8	94.2	0.0	-0.16	1.24	0.77	0.84	2.79	27855	3349	14	99	0	0	0	logfile
✔	6CXC	7774	2023-04-23	2018-04-02	3.9	4.14	—	4.0	0.006	1.03	0.0	0.06	10.78	0.01	2.198	9.05	0.29	6.2	93.8	0.0	-4.06	0.71	0.71	0.12	4.0	0.006	0.93	0.0	0.05	16.08	0.01	2.004	29.78	0.75	9.0	91.0	0.0	-2.59	2.15	0.72	0.74	0.04	15196	1945	18	0	6	0	0	logfile
✘	7CQ7	30438	2023-04-23	2020-08-08	3.55	3.95	—	4.0	0.008	1.07	0.0	0.06	10.33	0.01	1.915	5.84	0.07	9.3	90.7	0.0	-4.47	0.39	0.42	0.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13810	1766	8	0	9	0	0	logfile
✔	7EGB	31111	2023-04-21	2021-03-24	3.3	3.51	—	34.0	0.008	1.11	62.0	0.07	15.43	0.01	1.322	21.13	3.22	7.3	91.9	0.8	-3.64	0.32	0.02	0.13	3.0	0.006	0.97	0.0	0.05	16.75	0.01	1.840	21.35	0.38	8.6	91.2	0.2	-1.17	1.17	0.43	0.22	0.25	113098	13887	63	138	18	0	0	logfile
✔	7APK	11857	2023-04-27	2020-10-17	3.3	3.26	—	3.5	0.004	0.81	0.0	0.05	8.50	0.01	2.256	4.07	0.10	4.7	95.2	0.1	-2.73	0.41	0.22	0.13	2.9	0.007	0.80	0.0	0.04	13.05	0.00	2.079	13.91	0.12	6.6	93.3	0.1	0.97	1.14	0.50	0.44	0.92	72697	9893	30	0	74	0	0	logfile
✔	8D6X	27225	2023-04-25	2022-06-06	3.2	10.22	—	—	0.003	0.62	0.0	0.04	12.14	0.00	2.195	17.76	0.06	2.6	97.4	0.0	1.17	0.70	0.42	0.14	—	0.003	0.68	0.0	0.04	14.52	0.00	2.006	31.08	0.17	4.9	95.1	0.0	0.20	4.65	0.78	0.54	0.09	68362	8957	41	0	0	0	0	logfile
✔	4V91	2599	2023-04-25	2014-03-21	3.7	3.84	—	3.8	0.133	4.77	525.0	0.43	20.66	0.07	0.695	17.94	12.79	14.1	78.2	7.8	-5.39	0.33	0.36	0.15	3.8	0.032	1.24	0.0	0.04	17.28	0.01	2.047	15.07	1.04	8.1	91.2	0.7	-2.72	2.02	0.63	0.81	1.43	125665	6450	45	3482	0	0	0	logfile
✔	7RTU	24689	2023-04-20	2021-08-15	3.89	4.06	—	4.1	0.003	0.61	0.0	0.04	14.31	0.00	2.175	7.11	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.003	0.56	0.0	0.04	16.58	0.00	2.211	7.03	0.31	2.4	97.6	0.0	4.14	0.30	0.62	0.73	0.38	5962	754	6	0	12	0	0	logfile
✔	6H5i	0140	2023-04-20	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.64	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.7	0.003	0.67	0.0	0.04	15.36	0.00	2.097	14.22	0.32	4.1	95.9	0.0	1.46	1.26	0.37	0.24	0.27	43900	5392	26	0	0	0	0	logfile
✔	5X59	6704	2023-04-28	2017-02-15	3.7	3.77	—	3.7	0.011	1.66	0.0	0.08	14.57	0.01	1.477	23.24	4.97	13.2	85.4	1.3	-3.87	0.48	0.41	0.15	3.7	0.005	1.02	0.0	0.05	15.80	0.01	1.921	22.27	0.65	13.4	86.4	0.2	-2.42	1.59	0.60	0.65	1.20	26838	3423	6	0	30	0	0	logfile
✔	7ZPJ	14855	2023-04-26	2022-04-27	3.81	3.24	3.86	6.5	0.004	0.86	0.0	0.05	13.19	0.01	2.159	2.94	0.67	3.3	96.7	0.0	0.22	0.54	0.33	0.15	2.1	0.004	0.69	0.0	0.04	15.40	0.01	1.881	14.65	0.75	4.9	95.1	0.0	-0.12	1.51	0.64	0.57	0.39	23479	1355	3	55	0	0	11508	logfile
✔	7W0C	32238	2023-04-22	2021-11-18	3.93	4.02	—	3.8	0.002	0.55	0.0	0.04	13.50	0.00	2.105	14.31	0.07	4.2	95.8	0.1	-0.14	0.86	0.73	0.17	3.8	0.003	0.63	0.0	0.04	15.18	0.00	2.147	16.00	0.15	4.3	95.6	0.1	-0.03	0.46	0.86	0.74	0.26	13663	1492	5	72	2	0	0	logfile
✔	7W6P	32331	2023-04-20	2021-12-02	3.47	3.79	—	9.6	0.004	0.70	0.0	0.04	13.78	0.00	2.196	14.60	0.11	7.0	93.0	0.0	-0.94	0.22	0.11	0.18	8.7	0.003	0.68	0.0	0.04	15.37	0.00	2.199	14.66	0.44	5.7	94.3	0.0	-0.83	1.94	0.31	0.25	0.54	8408	1083	5	0	1	0	0	logfile
✔	7FJo	31625	2023-04-28	2021-08-04	3.34	3.72	—	3.5	0.012	1.56	4.0	0.09	12.69	0.02	1.277	9.35	3.26	7.2	92.4	0.4	-1.06	0.55	0.36	0.19	3.5	0.008	0.85	0.0	0.05	14.79	0.00	2.080	12.88	0.42	5.7	94.2	0.0	-0.56	3.15	0.77	0.79	1.92	28547	3640	12	0	25	0	0	logfile
✔	7MVU	24056	2023-04-27	2021-05-15	3.77	4.87	3.73	4.0	0.002	0.36	0.0	0.03	6.38	0.00	2.187	3.55	0.00	1.1	98.9	0.0	-0.33	0.85	0.73	0.19	4.0	0.003	0.58	0.0	0.03	11.75	0.00	1.882	11.93	0.22	3.2	96.8	0.0	2.54	2.06	0.88	0.82	0.36	25645	1604	2	0	0	0	12841	logfile
✔	7MF3	23810	2023-04-26	2021-04-08	3.4	4.14	—	3.2	0.003	0.68	0.0	0.04	15.41	0.00	1.985	17.36	0.04	6.5	93.5	0.0	-0.34	0.90	0.73	0.19	3.1	0.003	0.72	0.0	0.04	17.39	0.00	1.957	17.27	0.24	7.0	93.0	0.0	-0.87	1.45	0.91	0.74	0.04	22938	2822	12	0	8	0	0	logfile
✔	5Y4o	6805	2023-04-22	2017-08-04	3.8	3.55	—	3.6	0.022	2.44	28.0	0.12	19.88	0.02	0.471	78.50	20.31	7.8	87.8	4.5	-2.08	0.55	0.62	0.20	3.6	0.003	0.77	0.0	0.04	17.56	0.00	2.042	14.00	0.45	7.0	92.5	0.5	-0.18	1.75	0.59	0.72	1.52	12341	1561	7	0	0	0	0	logfile
✔	7CMi	30407	2023-04-20	2020-07-27	2.9	3.36	—	3.3	0.006	1.01	0.0	0.05	15.07	0.01	1.904	7.49	1.44	7.2	91.4	1.4	-5.99	0.62	0.67	0.20	3.3	0.004	0.81	0.0	0.05	16.52	0.00	2.092	8.50	2.49	7.4	92.5	0.1	-0.12	1.14	0.69	0.86	1.77	7353	928	7	0	10	6	0	logfile
✔	6PMi	20394	2023-04-21	2019-07-02	3.86	4.66	—	4.1	0.012	1.26	0.0	0.06	15.81	0.01	1.949	12.35	0.24	10.7	88.9	0.4	-4.48	0.69	0.51	0.20	4.1	0.004	0.70	0.0	0.04	17.32	0.00	1.819	21.88	0.54	10.0	89.9	0.1	-2.32	1.00	0.86	0.77	0.35	57985	3453	10	110	4	0	28610	logfile

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