Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	3J5Q	5776	2022-07-04	2013-10-28	3.8	4.64	—	7.1	0.010	1.45	0.0	0.09	20.92	0.01	0.275	105.06	29.72	6.4	93.1	0.5	-0.53	0.58	0.44	-0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18264	2324	8	0	168	0	0	logfile
✘	6RBE	4794	2022-07-04	2019-04-10	3.8	4.03	3.73	40.0	0.007	1.27	0.0	0.06	18.44	0.01	2.076	9.23	1.35	11.9	86.8	1.2	-4.17	0.25	0.02	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✔	6RWE	10038	2022-07-02	2019-06-04	3.0	3.12	—	3.7	0.009	1.02	1.0	0.06	13.12	0.01	1.975	6.79	0.73	7.4	92.5	0.1	-4.84	0.44	0.32	0.00	3.1	0.008	1.01	2.0	0.05	18.21	0.01	2.002	17.29	2.52	6.2	93.8	0.0	-1.73	1.38	0.71	0.73	1.38	53719	6454	26	95	8	0	0	logfile
✔	6CRZ	7577	2022-07-05	2018-03-19	3.3	3.42	3.35	4.5	0.007	0.96	0.0	0.06	9.21	0.01	2.254	6.85	0.04	7.8	92.2	0.0	-4.10	0.39	0.17	0.01	3.4	0.007	0.94	0.0	0.05	13.56	0.01	2.084	15.47	0.61	7.1	92.9	0.1	-2.19	1.45	0.59	0.55	0.91	25909	3205	6	0	66	0	0	logfile
✔	6QYM	4679	2022-07-05	2019-03-09	3.6	3.25	—	4.0	0.007	0.89	0.0	0.05	9.66	0.01	2.201	9.00	0.00	6.5	93.5	0.0	-4.63	0.62	0.60	0.02	3.5	0.006	1.00	0.0	0.05	17.55	0.01	2.058	32.70	1.38	5.9	94.1	0.0	-1.09	1.93	0.69	0.68	-0.22	26880	3360	12	0	0	0	0	logfile
✔	6TZ4	20588	2022-07-06	2019-08-10	3.2	3.81	3.16	3.7	0.010	0.48	0.0	0.04	8.47	0.00	2.212	3.95	0.00	1.4	98.6	0.0	-0.10	0.51	0.57	0.03	3.5	0.005	0.95	0.0	0.04	17.71	0.00	1.988	19.71	0.70	1.4	98.6	0.0	2.28	1.70	0.60	0.84	0.18	99216	12852	72	0	0	0	0	logfile
✔	7ML4	23908	2022-07-03	2021-04-27	3.1	4.68	—	2.8	0.006	0.74	0.0	0.04	13.76	0.00	1.382	21.85	0.53	9.0	90.8	0.2	-1.53	0.52	0.34	0.04	2.4	0.004	0.70	0.0	0.04	15.64	0.00	1.889	19.37	0.11	7.9	92.0	0.1	-0.68	1.80	0.80	0.77	1.56	62733	7907	42	91	138	0	0	logfile
✔	6K9F	9948	2022-07-04	2019-06-15	3.7	7.50	4.15	7.2	0.002	0.45	0.0	0.03	11.87	0.00	2.356	5.29	0.00	0.0	100.0	0.0	-0.68	0.66	0.76	0.04	7.0	0.004	1.14	0.0	0.05	18.10	0.00	2.005	26.86	0.63	1.3	98.7	0.0	-0.41	3.86	0.67	0.84	0.10	8484	1044	12	0	0	0	0	logfile
✔	6LTJ	0974	2022-07-06	2020-01-22	3.7	4.16	—	15.0	0.010	1.08	12.0	0.07	22.08	0.01	2.173	14.06	2.63	6.4	93.3	0.3	-3.67	0.46	0.08	0.04	9.6	0.010	1.10	2.0	0.05	22.65	0.01	1.911	26.45	0.09	5.2	94.8	0.0	-1.05	1.51	0.59	0.27	0.44	34283	3656	21	238	1	0	0	logfile
✔	6XSS	22305	2022-07-03	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.34	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.015	1.65	1.0	0.04	17.18	0.01	2.065	21.16	0.36	1.6	98.4	0.0	2.61	1.33	0.75	0.80	0.22	8048	1040	4	0	0	0	0	logfile
✔	6oiG	20077	2022-07-05	2019-04-09	3.8	5.08	—	5.0	0.011	1.45	2.0	0.07	19.62	0.01	0.087	53.76	1.20	15.9	83.9	0.2	-5.09	0.77	0.48	0.04	4.9	0.011	1.00	5.0	0.05	18.58	0.01	1.477	32.38	0.87	12.9	86.9	0.2	-2.68	3.08	0.89	0.85	0.00	129140	6757	48	3522	116	0	0	logfile
✔	6N1i	8903	2022-07-03	2018-11-08	3.58	3.63	—	3.6	0.009	1.13	0.0	0.06	9.87	0.01	1.147	27.10	0.00	2.4	97.6	0.0	-6.04	0.42	0.58	0.05	3.6	0.004	0.77	0.0	0.04	17.64	0.00	2.141	15.94	0.55	4.3	95.7	0.0	-0.22	2.39	0.56	0.82	1.99	11136	1360	16	0	0	0	0	logfile
✘	6RUo	10007	2022-07-08	2019-05-28	3.5	3.56	—	4.0	0.007	1.05	0.0	0.06	13.11	0.01	2.170	8.01	0.40	10.5	89.4	0.1	-4.99	0.53	0.29	0.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	50792	6086	26	93	8	0	0	logfile
✔	6Q2o	20576	2022-07-04	2019-08-08	3.65	3.77	—	3.9	0.004	0.77	0.0	0.05	8.38	0.01	1.534	3.25	0.12	5.6	94.4	0.0	-3.75	0.48	0.23	0.05	3.6	0.011	1.13	2.0	0.05	14.90	0.01	2.030	15.53	0.78	7.4	92.6	0.0	-1.91	1.86	0.66	0.62	0.66	15196	1900	8	0	20	0	0	logfile
✔	6F1V	4170	2022-07-03	2017-11-23	3.4	4.10	—	3.7	0.014	1.86	0.0	0.09	11.72	0.01	2.246	13.29	0.18	11.1	88.7	0.2	-3.46	0.46	0.69	0.05	3.7	0.003	0.68	0.0	0.04	15.59	0.00	2.229	13.48	0.18	6.1	93.9	0.0	1.09	1.71	0.48	0.76	0.63	5164	628	2	0	0	0	0	logfile
✘	6J5T	0680	2022-07-02	2019-01-12	3.4	3.94	—	3.0	0.009	1.20	0.0	0.07	11.49	0.01	1.182	7.11	0.59	11.3	88.4	0.3	-4.25	0.83	0.67	0.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53488	6640	25	0	15	0	0	logfile
✔	6N1H	8902	2022-07-03	2018-11-08	3.17	3.22	—	3.2	0.006	1.13	0.0	0.06	12.23	0.01	0.657	32.07	3.97	7.4	92.6	0.0	-7.22	0.39	0.46	0.05	3.2	0.003	0.71	0.0	0.04	17.49	0.01	2.165	9.68	2.87	6.3	93.7	0.0	1.26	2.37	0.62	0.83	1.74	10991	1328	16	0	0	0	0	logfile
✔	7WoT	32658	2022-07-06	2022-01-22	3.73	4.26	—	3.8	0.010	1.69	284.0	0.10	15.82	0.01	1.016	24.11	4.41	9.4	88.4	2.2	-3.07	0.49	0.33	0.06	3.9	0.009	1.00	2.0	0.05	16.48	0.01	1.624	22.10	0.13	9.9	89.8	0.3	-1.23	1.08	0.56	0.44	0.23	133827	17285	24	0	0	0	0	logfile
✔	6o81	0649	2022-07-06	2019-03-08	3.21	3.63	—	3.5	0.004	0.71	0.0	0.14	11.98	0.01	2.285	4.59	0.34	4.5	95.5	0.0	-4.06	0.69	0.65	0.06	3.5	0.009	0.85	0.0	0.05	14.79	0.01	2.087	11.86	0.56	7.5	92.5	0.0	-0.57	1.11	0.76	0.86	2.63	33693	4949	17	0	29	0	0	logfile
✔	6NEQ	9358	2022-07-04	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.35	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.004	0.68	0.0	0.04	16.24	0.01	2.099	13.08	0.35	5.3	94.6	0.1	-0.32	1.93	0.84	0.84	1.44	65776	5509	32	952	147	0	0	logfile

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