Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZW6	14993	2023-09-29	2022-05-18	3.7	3.96	3.76	3.7	0.003	0.53	0.0	0.04	16.90	0.00	1.934	8.56	0.31	2.7	97.3	0.0	2.29	0.78	0.59	0.31	3.7	0.002	0.51	0.0	0.04	17.93	0.00	1.920	55.57	0.33	3.2	96.8	0.0	2.03	1.98	0.83	0.72	0.56	57112	6344	8	0	0	0	6176	logfile
✔	7S37	24818	2023-09-29	2021-09-04	3.2	3.10	3.27	2.3	0.006	1.04	0.0	0.05	12.76	0.01	2.211	4.66	0.11	3.7	96.3	0.0	-1.48	0.74	0.62	0.31	2.2	0.003	0.68	0.0	0.04	15.87	0.00	2.128	15.59	0.43	3.6	96.4	0.0	0.32	1.47	0.77	0.67	0.59	9392	1033	2	46	0	0	0	logfile
✔	7XUN	33475	2023-09-28	2022-05-19	3.4	3.91	3.41	3.8	0.002	0.57	0.0	0.04	13.72	0.00	2.129	11.02	0.00	4.1	95.9	0.0	-0.92	0.72	0.76	0.33	3.8	0.003	0.72	0.0	0.05	15.95	0.00	2.159	12.95	0.33	4.9	95.1	0.0	-0.13	1.11	0.72	0.77	0.22	5591	741	1	0	0	0	0	logfile
✔	7YR7	34048	2023-09-28	2022-08-09	3.8	4.63	4.40	4.6	0.008	1.25	1.0	0.09	21.39	0.01	2.385	7.94	4.74	16.7	83.3	0.0	-5.36	0.64	0.60	0.33	4.6	0.005	0.85	0.0	0.04	21.04	0.01	2.101	22.72	1.09	21.7	78.3	0.0	-3.50	1.49	0.67	0.66	0.71	5102	330	7	118	0	0	0	logfile
✔	7S1Y	24812	2023-09-28	2021-09-02	3.6	3.90	—	3.9	0.005	0.77	2.0	0.04	12.89	0.01	1.566	12.97	0.00	7.2	92.6	0.2	-0.33	0.40	0.55	0.33	3.9	0.003	0.72	2.0	0.04	14.86	0.00	2.189	13.61	0.52	6.9	92.9	0.2	-0.45	0.58	0.51	0.64	0.51	6580	948	4	0	6	0	0	logfile
✔	7Y36	33590	2023-09-29	2022-06-10	2.8	3.76	2.72	3.7	0.007	0.73	0.0	0.05	12.89	0.00	2.152	7.06	0.00	4.2	95.8	0.0	-1.26	0.57	0.54	0.34	3.6	0.003	0.75	0.0	0.04	16.83	0.00	0.249	10.79	3.23	3.9	96.1	0.0	0.37	1.49	0.63	0.77	2.04	9206	1151	7	0	1	0	0	logfile
✔	6UKT	20812	2023-09-29	2019-10-05	3.87	4.71	—	4.3	0.007	1.03	0.0	0.06	16.89	0.01	2.247	10.29	0.46	15.8	84.2	0.0	-5.03	0.89	0.80	0.36	4.3	0.003	0.71	0.0	0.04	17.55	0.00	2.116	15.46	0.11	12.1	87.9	0.0	-2.31	0.57	0.90	0.84	0.27	8979	1204	6	0	0	0	0	logfile
✔	8D43	27173	2023-09-28	2022-06-01	2.88	3.12	2.94	5.9	0.004	0.84	1.0	0.06	18.27	0.01	1.371	8.43	5.48	6.5	93.5	0.0	-1.48	0.17	-0.02	0.37	3.2	0.004	0.84	0.0	0.05	18.51	0.01	2.058	18.77	3.10	5.2	94.7	0.1	-1.45	2.71	0.41	0.35	0.56	7763	962	5	0	6	1	0	logfile
✔	7XK8	33247	2023-09-28	2022-04-19	3.3	3.49	3.12	3.4	0.003	0.48	0.0	0.04	11.62	0.00	2.248	7.78	0.00	3.1	96.9	0.0	-1.25	0.55	0.65	0.38	3.5	0.006	0.74	0.0	0.05	14.76	0.00	2.041	16.39	1.34	4.6	95.4	0.0	0.19	0.68	0.59	0.73	0.65	6796	923	5	0	1	0	0	logfile
✔	8EFD	28080	2023-09-28	2022-09-08	3.8	4.67	3.83	3.9	0.002	0.49	0.0	0.04	14.10	0.00	2.048	8.46	0.13	3.8	96.2	0.0	0.81	0.88	0.79	0.38	3.9	0.002	0.61	0.0	0.04	15.94	0.00	2.165	13.04	0.26	4.5	95.5	0.0	0.71	0.55	0.88	0.80	0.54	7107	886	2	0	0	0	0	logfile
✔	7M3L	23656	2023-09-28	2021-03-18	3.2	4.99	—	3.3	0.009	0.97	0.0	0.06	15.05	0.01	1.551	6.78	0.30	9.1	90.6	0.3	-3.19	0.29	0.38	0.40	3.1	0.004	0.72	0.0	0.04	15.15	0.00	2.043	15.39	0.30	7.0	92.8	0.1	-0.73	3.83	0.46	0.76	1.89	6113	775	3	0	0	0	0	logfile
✔	6QB8	4489	2023-09-29	2018-12-20	3.97	4.19	—	2.3	0.005	0.96	0.0	0.06	15.67	0.01	2.238	11.60	0.76	8.2	91.8	0.0	-4.47	0.89	0.77	0.40	2.1	0.004	0.79	0.0	0.05	16.49	0.00	2.037	28.20	0.27	9.0	91.0	0.0	-1.64	1.54	0.89	0.80	0.52	60035	7870	18	0	2	0	0	logfile
✔	7M18	23615	2023-09-28	2021-03-12	3.38	4.09	—	4.1	0.007	1.33	0.0	0.05	19.80	0.01	1.728	23.77	0.28	10.4	89.3	0.3	-2.48	0.74	0.73	0.41	4.1	0.003	0.79	0.0	0.04	19.96	0.01	2.078	17.84	0.33	8.5	91.3	0.1	-1.88	0.55	0.75	0.74	0.41	54064	6904	32	8	16	0	0	logfile
✔	7BW8	30230	2023-09-28	2020-04-14	3.8	4.16	3.79	4.4	0.009	1.38	0.0	0.07	17.39	0.01	1.974	49.64	0.00	22.3	77.7	0.0	-5.01	0.70	0.66	0.41	4.4	0.003	0.93	0.0	0.05	18.23	0.01	2.200	21.41	0.88	10.6	89.4	0.0	-3.01	2.07	0.68	0.63	0.53	6021	737	3	0	0	0	0	logfile
✔	7B6X	12057	2023-09-30	2020-12-08	3.6	2.59	—	2.5	0.008	1.06	0.0	0.06	14.17	0.01	2.035	44.45	0.09	13.3	86.7	0.0	-2.77	0.75	0.72	0.42	2.5	0.003	0.74	0.0	0.04	16.14	0.00	2.135	23.78	0.34	7.5	92.4	0.1	-1.21	1.36	0.75	0.71	0.06	10470	1290	8	0	0	0	0	logfile
✔	8AVX	15686	2023-09-28	2022-08-27	3.5	3.71	3.49	3.7	0.008	1.38	0.0	0.08	17.79	0.01	2.316	1.69	4.23	4.5	95.2	0.2	-4.05	0.69	0.67	0.44	3.6	0.003	0.73	0.0	0.04	17.86	0.00	2.183	9.87	0.40	3.7	96.3	0.0	-0.65	1.50	0.71	0.68	1.09	7427	961	4	0	2	0	0	logfile
✔	8oMA	16972	2023-09-30	2023-03-31	3.29	2.61	3.29	3.2	0.008	1.30	1.0	0.09	19.39	0.01	1.878	28.14	2.97	7.9	92.1	0.0	-1.51	0.68	0.70	0.46	2.0	0.003	0.78	0.0	0.04	19.93	0.00	1.955	23.58	0.59	6.2	93.8	0.0	-0.55	1.94	0.63	0.60	0.44	11379	1337	6	34	3	0	0	logfile
✔	7B0U	11971	2023-09-27	2020-11-22	3.86	4.15	—	4.1	0.004	0.71	4.0	0.04	12.48	0.00	2.196	16.72	0.54	5.8	94.2	0.0	-0.21	0.66	0.74	0.48	4.1	0.004	0.70	0.0	0.04	14.96	0.00	2.096	18.38	0.41	6.8	93.2	0.0	-0.05	0.46	0.67	0.75	0.50	105492	13320	60	0	0	0	0	logfile
✔	7WQ3	32698	2023-09-29	2022-01-24	2.7	2.90	—	3.2	0.011	0.72	0.0	0.06	8.04	0.00	2.189	5.16	0.40	1.0	99.0	0.0	-1.34	0.39	0.47	0.48	3.0	0.003	0.62	0.0	0.04	15.73	0.00	2.165	7.11	2.94	2.4	97.6	0.0	0.81	1.89	0.64	0.82	3.09	9209	1160	7	0	5	0	0	logfile
✔	8BVT	16271	2023-09-27	2022-12-06	3.94	4.42	4.04	4.3	0.009	1.19	0.0	0.05	17.66	0.01	2.157	14.86	0.23	4.2	95.8	0.0	0.33	0.60	0.78	0.48	4.3	0.003	0.83	0.0	0.04	17.04	0.00	2.156	13.04	0.70	4.1	95.9	0.0	0.17	0.31	0.60	0.78	-0.07	4517	623	3	0	1	0	0	logfile

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