Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RWE	10038	2022-12-11	2019-06-04	3.0	3.12	—	3.7	0.009	1.02	1.0	0.06	13.12	0.01	1.975	6.40	0.73	7.4	92.5	0.1	-4.84	0.44	0.32	0.00	3.1	0.004	0.80	0.0	0.05	18.30	0.00	2.038	13.99	2.31	5.9	94.1	0.0	-1.29	1.56	0.75	0.80	1.57	53719	6454	26	95	8	0	0	logfile
✘	6RBE	4794	2022-12-19	2019-04-10	3.8	4.03	3.73	40.0	0.007	1.27	0.0	0.06	18.44	0.01	2.076	9.23	1.35	11.9	86.8	1.2	-4.17	0.25	0.02	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✔	7TR9	26083	2022-12-18	2022-01-28	3.9	4.30	—	4.1	0.003	0.68	2.0	0.05	13.00	0.00	1.387	16.29	0.17	8.7	90.9	0.4	-2.44	0.80	0.72	0.00	4.0	0.003	0.79	0.0	0.05	15.86	0.00	1.168	25.43	0.41	9.0	90.8	0.3	-2.23	2.93	0.82	0.77	0.52	34208	4192	20	75	2	0	0	logfile
✔	6CRZ	7577	2022-12-15	2018-03-19	3.3	3.42	3.35	4.5	0.007	0.96	0.0	0.06	9.21	0.01	2.254	6.85	0.04	7.8	92.2	0.0	-4.10	0.39	0.17	0.01	3.4	0.004	0.74	0.0	0.05	13.55	0.01	2.094	13.15	0.36	6.7	93.3	0.0	-1.76	1.51	0.62	0.60	0.91	25909	3205	25	0	66	0	0	logfile
✔	6QYM	4679	2022-12-15	2019-03-09	3.6	3.25	—	4.0	0.007	0.89	0.0	0.05	9.66	0.01	2.201	9.00	0.00	6.5	93.5	0.0	-4.63	0.62	0.60	0.02	3.5	0.004	0.91	0.0	0.05	17.40	0.00	2.103	24.96	0.85	4.7	95.3	0.0	-0.54	1.92	0.69	0.67	-0.04	26880	3360	12	0	0	0	0	logfile
✔	6TZ4	20588	2022-12-19	2019-08-10	3.2	3.81	3.16	3.7	0.010	0.48	0.0	0.04	8.47	0.00	2.212	3.95	0.00	1.4	98.6	0.0	-0.10	0.51	0.57	0.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	99216	12852	72	0	0	0	0	logfile
✔	6LTJ	0974	2022-12-18	2020-01-22	3.7	4.16	—	15.0	0.010	1.08	12.0	0.07	22.08	0.01	2.173	14.06	2.63	6.4	93.3	0.3	-3.67	0.46	0.08	0.04	10.0	0.003	0.75	0.0	0.04	22.18	0.00	2.125	17.36	0.22	3.7	96.3	0.0	0.01	1.54	0.58	0.25	0.32	34283	3656	21	238	1	0	0	logfile
✔	7S8V	24927	2022-12-12	2021-09-20	3.73	4.42	—	3.9	0.003	0.60	0.0	0.09	12.33	0.00	2.098	5.69	0.14	7.0	93.0	0.0	-3.48	0.68	0.64	0.04	3.9	0.004	0.68	0.0	0.04	14.22	0.01	1.959	16.92	0.00	10.4	89.6	0.0	-2.27	1.59	0.70	0.71	0.57	12502	782	7	0	12	0	6045	logfile
✔	6XSS	22305	2022-12-11	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.34	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.003	0.80	0.0	0.04	16.91	0.00	2.278	17.30	0.24	1.0	99.0	0.0	2.54	1.34	0.75	0.79	0.21	8048	1040	4	0	0	0	0	logfile
✔	6K9F	9948	2022-12-13	2019-06-15	3.7	7.50	4.15	7.2	0.002	0.45	0.0	0.03	11.87	0.00	2.356	5.29	0.00	0.0	100.0	0.0	-0.68	0.66	0.76	0.04	4.6	0.004	1.16	0.0	0.05	17.89	0.00	2.058	27.39	0.42	1.2	98.8	0.0	-0.22	3.70	0.67	0.84	0.57	8484	1044	12	0	0	0	0	logfile
✘	8GWA	34307	2022-12-20	2022-09-16	2.9	3.13	3.01	7.0	0.017	1.77	0.0	0.16	16.93	0.02	1.107	14.98	0.00	5.7	94.2	0.2	-1.01	0.17	-0.02	0.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37660	4006	27	0	160	0	0	logfile
✔	6F1V	4170	2022-12-11	2017-11-23	3.4	4.10	—	3.7	0.014	1.86	0.0	0.09	11.72	0.01	2.246	13.29	0.18	11.1	88.7	0.2	-3.46	0.46	0.69	0.05	3.7	0.003	0.71	0.0	0.04	15.64	0.00	2.200	14.64	0.18	5.9	94.1	0.0	1.12	1.71	0.48	0.75	0.47	5164	628	2	0	0	0	0	logfile
✘	6J5T	0680	2022-12-19	2019-01-12	3.4	3.94	—	3.0	0.009	1.20	0.0	0.07	11.49	0.01	1.182	7.10	0.59	11.3	88.4	0.3	-4.25	0.83	0.67	0.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53488	6640	25	0	15	0	0	logfile
✔	6N1i	8903	2022-12-12	2018-11-08	3.58	3.63	—	3.6	0.009	1.13	0.0	0.06	9.87	0.01	1.147	27.10	0.00	2.4	97.6	0.0	-6.04	0.42	0.58	0.05	3.6	0.003	0.78	0.0	0.04	17.63	0.00	2.236	15.98	0.87	4.5	95.5	0.0	-0.33	2.36	0.57	0.82	1.93	11136	1360	16	0	0	0	0	logfile
✔	6Q2o	20576	2022-12-13	2019-08-08	3.65	3.77	—	3.9	0.004	0.77	0.0	0.05	8.38	0.01	1.534	3.25	0.12	5.6	94.4	0.0	-3.75	0.48	0.23	0.05	3.6	0.005	0.89	0.0	0.05	14.72	0.01	2.099	18.48	1.20	7.7	92.3	0.0	-1.96	2.05	0.68	0.65	0.76	15196	1900	8	0	20	0	0	logfile
✔	6RUo	10007	2022-12-22	2019-05-28	3.5	3.56	—	4.0	0.007	1.05	0.0	0.06	13.11	0.01	2.170	8.06	0.40	10.5	89.4	0.1	-4.99	0.53	0.29	0.05	3.5	0.004	0.81	0.0	0.05	17.45	0.00	2.062	19.29	0.53	8.4	91.6	0.0	-2.64	2.43	0.68	0.60	0.65	50792	6086	26	93	8	0	0	logfile
✔	6N1H	8902	2022-12-12	2018-11-08	3.17	3.22	—	3.2	0.006	1.13	0.0	0.06	12.23	0.01	0.657	32.07	3.97	7.4	92.6	0.0	-7.22	0.39	0.46	0.05	3.2	0.003	0.68	0.0	0.04	17.82	0.00	2.142	10.27	2.79	6.7	93.3	0.0	0.79	4.74	0.62	0.84	1.69	10991	1328	16	0	0	0	0	logfile
✔	6o81	0649	2022-12-18	2019-03-08	3.21	3.63	—	3.5	0.004	0.71	0.0	0.14	11.98	0.01	2.285	4.78	0.34	4.5	95.5	0.0	-4.06	0.69	0.65	0.06	3.5	0.008	0.80	0.0	0.05	14.66	0.00	2.065	11.37	0.60	7.0	93.0	0.0	-0.48	1.10	0.75	0.85	2.61	33693	4949	17	0	29	0	0	logfile
✔	6NEQ	9358	2022-12-13	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.35	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.004	0.70	0.0	0.04	16.37	0.00	2.024	14.12	0.48	6.2	93.8	0.1	-0.36	2.04	0.85	0.85	1.51	65776	5509	32	952	147	0	0	logfile
✔	6QS6	4624	2022-12-16	2019-02-20	3.9	4.03	2.44	4.0	0.011	1.09	0.0	0.06	10.53	0.01	2.187	6.85	0.07	8.2	91.8	0.0	-4.07	0.57	0.46	0.09	3.9	0.004	0.86	0.0	0.05	16.70	0.00	2.076	21.09	0.71	5.1	94.9	0.0	-0.72	1.39	0.75	0.78	0.89	28557	3568	13	0	35	0	0	logfile

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