Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oiG	20077	2021-08-10	2019-04-09	3.8	5.08	—	5.0	0.011	1.45	2.0	0.07	19.62	0.01	0.087	53.41	1.20	15.9	83.9	0.2	-5.09	0.77	0.48	0.04	4.9	0.010	0.92	2.0	0.05	18.05	0.01	1.456	22.61	0.69	10.7	89.1	0.1	-2.34	2.33	0.89	0.85	0.02	129140	6757	48	3522	116	0	0	logfile
✔	6F1V	4170	2021-08-07	2017-11-23	3.4	4.10	—	3.7	0.014	1.86	0.0	0.09	11.72	0.01	2.246	13.19	0.18	11.1	88.7	0.2	-3.46	0.46	0.69	0.05	3.7	0.003	0.67	0.0	0.04	15.52	0.00	2.162	12.33	0.36	5.5	94.5	0.0	1.84	1.79	0.48	0.76	0.60	5164	628	2	0	0	0	0	logfile
✘	6J5T	0680	2021-08-08	2019-01-12	3.4	3.94	—	3.0	0.009	1.20	0.0	0.07	11.49	0.01	1.182	6.99	0.59	11.3	88.4	0.3	-4.25	0.83	0.67	0.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53488	6640	25	0	15	0	0	logfile
✔	6Q2o	20576	2021-08-08	2019-08-08	3.65	3.77	—	3.9	0.004	0.78	0.0	0.05	8.38	0.01	1.534	3.25	0.12	5.6	94.4	0.0	-3.75	0.48	0.23	0.05	3.6	0.006	0.94	0.0	0.05	15.12	0.01	1.996	18.95	0.60	7.9	92.1	0.0	-2.28	2.25	0.69	0.67	1.00	15196	1900	8	0	20	0	0	logfile
✔	6N1H	8902	2021-08-08	2018-11-08	3.17	3.22	—	3.2	0.006	1.13	0.0	0.06	12.23	0.01	0.657	30.92	3.97	7.4	92.6	0.0	-7.22	0.39	0.46	0.05	3.2	0.003	0.69	0.0	0.04	17.79	0.01	2.180	9.31	3.04	6.6	93.4	0.0	1.00	4.70	0.63	0.84	1.76	10991	1328	16	0	0	0	0	logfile
✔	6RUo	10007	2021-08-11	2019-05-28	3.5	3.56	—	4.0	0.007	1.05	0.0	0.06	13.11	0.01	2.170	7.92	0.40	10.5	89.4	0.1	-4.99	0.53	0.29	0.05	3.5	0.011	1.13	2.0	0.05	17.67	0.01	1.711	24.88	0.13	9.7	90.2	0.0	-3.22	2.49	0.69	0.62	0.77	50792	6086	26	93	8	0	0	logfile
✔	6N1i	8903	2021-08-08	2018-11-08	3.58	3.63	—	3.6	0.009	1.13	0.0	0.06	9.87	0.01	1.147	26.83	0.00	2.4	97.6	0.0	-6.04	0.42	0.58	0.05	3.6	0.003	0.75	0.0	0.04	17.97	0.00	2.199	16.20	0.71	4.8	95.2	0.0	0.07	2.43	0.56	0.82	1.78	11136	1360	16	0	0	0	0	logfile
✔	6o81	0649	2021-08-10	2019-03-08	3.21	3.63	—	3.5	0.003	0.72	0.0	0.05	11.96	0.01	2.285	4.56	0.34	4.5	95.5	0.0	-4.06	0.69	0.65	0.06	3.5	0.005	0.71	0.0	0.05	14.78	0.00	2.033	10.23	0.49	5.6	94.4	0.0	0.05	1.12	0.76	0.86	2.51	33693	4949	17	0	29	0	0	logfile
✔	6SSK	10296	2021-08-18	2019-09-08	3.18	3.64	—	3.6	0.008	0.89	10.0	0.06	14.40	0.01	1.561	4.56	0.18	3.5	96.2	0.3	-4.85	0.57	0.57	0.07	3.6	0.005	0.76	2.0	0.04	16.86	0.01	1.910	9.20	0.38	2.7	97.3	0.0	-0.35	1.42	0.75	0.86	1.61	155900	19870	90	0	0	0	0	logfile
✔	6iH9	9671	2021-08-27	2018-09-29	2.8	2.91	—	3.5	0.008	0.94	0.0	0.05	10.02	0.01	1.244	43.37	0.65	4.2	95.6	0.2	-2.32	0.34	0.23	0.07	2.9	0.006	0.69	0.0	0.04	16.62	0.01	2.137	10.65	2.23	3.6	96.2	0.2	-0.88	1.85	0.84	0.89	4.60	248580	31020	60	0	0	0	0	logfile
✔	6NEQ	9358	2021-08-09	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.27	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.006	0.67	0.0	0.03	16.26	0.00	2.095	11.27	0.35	5.1	94.9	0.1	0.02	2.05	0.85	0.84	1.31	65776	5509	32	952	147	0	0	logfile
✔	6T59	10380	2021-08-13	2019-10-15	3.11	3.19	3.02	7.3	0.011	0.83	0.0	0.05	17.10	0.00	1.148	10.72	0.76	8.9	91.0	0.1	-5.04	0.22	0.01	0.07	3.1	0.005	0.93	1.0	0.05	19.61	0.01	1.077	24.98	0.68	8.6	91.3	0.0	-2.51	2.17	0.61	0.61	0.52	143047	7383	64	3890	225	0	0	logfile
✘	6VoC	21260	2021-08-16	2020-01-30	3.1	3.49	—	20.0	0.006	0.90	0.0	0.06	8.74	0.01	0.163	459.01	0.00	1.9	98.1	0.0	-1.94	0.19	0.06	0.07	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	214200	28560	180	0	0	0	0	logfile
✔	6SSL	10297	2021-08-12	2019-09-08	3.77	4.37	—	4.3	0.007	0.96	0.0	0.06	15.56	0.01	0.755	8.46	0.42	5.5	94.2	0.4	-4.50	0.64	0.65	0.08	4.3	0.007	0.96	5.0	0.05	17.59	0.01	2.081	14.26	0.64	4.6	95.4	0.0	-0.72	2.20	0.74	0.83	1.19	185832	23676	108	0	0	0	0	logfile
✔	6QoZ	4610	2021-08-08	2019-02-13	3.4	3.65	3.13	3.5	0.011	1.46	4.0	0.09	15.40	0.01	1.243	4.14	5.13	6.0	93.1	0.9	-3.28	0.40	0.61	0.09	3.5	0.003	0.64	0.0	0.04	15.36	0.00	2.117	6.73	0.30	2.6	97.4	0.0	-1.35	1.89	0.48	0.86	3.18	17987	2307	9	0	0	0	0	logfile
✘	5AJ0	2875	2021-08-17	2015-02-19	3.5	11.12	—	—	0.011	1.61	31.0	0.09	16.14	0.01	0.414	42.35	8.00	5.7	89.8	4.5	0.77	0.00	0.00	0.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	218559	11738	106	5776	355	0	0	logfile
✔	6QS6	4624	2021-08-10	2019-02-20	3.9	4.03	2.44	4.0	0.011	1.10	0.0	0.06	10.53	0.01	2.187	6.85	0.07	8.2	91.8	0.0	-4.07	0.57	0.46	0.09	3.9	0.006	1.00	0.0	0.05	16.83	0.01	1.618	21.78	0.37	6.3	93.7	0.0	-0.52	1.76	0.76	0.81	1.13	28557	3568	13	0	35	0	0	logfile
✔	5ZYA	6915	2021-08-08	2018-05-23	3.95	4.18	—	4.1	0.009	1.35	0.0	0.16	11.13	0.01	1.673	8.56	0.32	9.6	90.4	0.0	-4.57	0.67	0.52	0.10	4.0	0.012	1.24	0.0	0.06	15.53	0.01	1.726	22.92	0.49	7.4	92.6	0.0	-2.01	1.76	0.77	0.73	0.98	16957	2143	7	0	5	0	0	logfile
✔	7EGC	31112	2021-08-09	2021-03-24	3.9	3.72	—	4.9	0.008	1.13	76.0	0.08	15.44	0.01	1.402	23.95	3.39	7.3	91.9	0.8	-3.59	0.43	0.10	0.10	3.1	0.006	0.87	0.0	0.04	16.58	0.01	2.044	15.73	0.28	5.6	94.2	0.2	-0.55	1.31	0.51	0.32	0.43	113129	13879	63	142	18	0	0	logfile
✔	6MDP	9103	2021-08-11	2018-09-04	3.8	5.39	—	4.1	0.009	1.42	0.0	0.17	12.33	0.01	2.016	5.24	0.33	2.4	97.5	0.1	-3.57	0.80	0.67	0.10	4.2	0.003	0.77	0.0	0.15	13.33	0.00	1.970	12.05	0.17	6.3	93.7	0.0	-0.32	0.78	0.89	0.84	0.44	45210	2832	13	0	11	0	22777	logfile

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