Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oZo	13130	2021-12-01	2021-06-28	3.8	4.06	3.82	3.9	0.002	0.39	0.0	0.04	14.07	0.00	1.993	4.62	0.00	2.1	97.9	0.0	1.21	0.79	0.71	0.70	3.9	0.005	0.76	0.0	0.05	16.80	0.01	2.126	16.86	0.37	4.0	96.0	0.0	-0.31	1.28	0.83	0.78	0.96	54330	6774	32	0	10	0	0	logfile
✔	6Xi8	22191	2021-12-01	2020-06-19	3.64	2.63	3.78	2.0	0.010	1.69	4.0	0.11	15.71	0.01	1.333	6.49	0.77	9.0	91.0	0.0	-4.62	0.66	0.54	0.71	2.0	0.004	1.19	0.0	0.05	17.71	0.01	2.174	18.85	0.77	8.5	91.5	0.0	-2.29	1.24	0.68	0.64	0.95	5022	636	4	0	2	0	0	logfile
✔	6S3K	10092	2021-12-01	2019-06-25	3.7	4.09	3.85	4.1	0.008	1.12	0.0	0.06	15.38	0.01	2.276	5.87	0.62	10.7	89.3	0.0	-4.54	0.57	0.75	0.73	4.1	0.004	0.76	0.0	0.04	17.01	0.01	2.256	10.97	0.21	7.8	92.2	0.0	0.22	1.25	0.56	0.72	0.73	8902	1146	4	0	6	0	0	logfile
✔	6ZG1	11191	2021-12-01	2020-06-18	3.77	4.58	—	4.3	0.010	1.61	6.0	0.11	18.20	0.01	2.449	5.97	5.94	2.0	97.9	0.1	-1.53	0.76	0.67	0.74	4.3	0.005	0.99	0.0	0.05	18.09	0.01	2.095	22.48	1.37	5.6	94.4	0.0	-0.96	1.66	0.79	0.80	0.84	9931	1175	16	0	28	0	0	logfile
✔	6Z3Z	11067	2021-12-01	2020-05-22	3.19	3.90	—	3.6	0.003	0.62	0.0	0.04	13.78	0.00	2.198	8.80	0.31	6.4	93.6	0.0	-0.26	0.62	0.69	0.75	3.7	0.010	1.06	0.0	0.04	15.74	0.01	2.225	15.97	0.46	7.7	92.3	0.0	0.03	0.66	0.63	0.72	0.90	6115	769	2	0	0	0	0	logfile
✔	6WFQ	21652	2021-12-01	2020-04-03	3.9	4.88	3.77	3.9	0.002	0.49	0.0	0.03	16.66	0.00	2.265	8.11	0.80	4.3	95.7	0.0	-2.49	0.84	0.78	0.76	3.9	0.004	0.91	0.0	0.05	19.24	0.01	2.157	23.46	0.27	6.5	93.5	0.0	-0.40	1.01	0.85	0.81	0.54	4164	447	4	30	0	0	0	logfile
✔	3J89	6123	2021-12-01	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	2.11	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.004	0.56	0.0	0.03	20.77	0.01	2.082	10.42	2.01	1.4	98.6	0.0	2.48	1.98	0.81	0.80	0.26	9025	551	19	0	0	0	4598	logfile
✔	6Li3	0902	2021-12-01	2019-12-10	3.32	3.48	—	3.8	0.002	0.56	0.0	0.04	13.86	0.00	2.124	7.60	0.00	2.4	97.6	0.0	-2.69	0.55	0.68	0.78	3.6	0.004	0.67	0.0	0.04	16.59	0.00	2.153	9.72	0.22	4.6	95.4	0.0	-0.19	1.34	0.60	0.77	1.53	8289	1045	5	0	0	0	0	logfile
✔	6WU0	21901	2021-12-01	2020-05-04	3.59	3.92	—	3.9	0.003	0.65	0.0	0.04	13.43	0.00	2.211	10.57	0.00	6.0	94.0	0.0	-1.89	0.56	0.63	0.78	3.9	0.015	1.49	1.0	0.04	16.06	0.01	2.103	16.04	1.07	7.4	92.6	0.0	-0.20	0.51	0.55	0.64	0.48	6340	854	1	0	0	0	0	logfile
✔	6XoT	22279	2021-12-01	2020-07-07	3.9	4.56	3.90	4.1	0.006	1.07	0.0	0.06	14.01	0.01	2.272	5.76	0.23	2.8	97.2	0.0	-1.51	0.86	0.74	0.81	4.2	0.004	0.87	1.0	0.05	16.06	0.01	2.086	19.84	0.35	3.0	97.0	0.0	0.73	1.98	0.88	0.81	1.17	7704	966	1	0	0	0	0	logfile
✔	7RTW	24691	2021-12-01	2021-08-15	3.23	3.74	—	3.7	0.003	0.57	0.0	0.04	15.11	0.00	2.213	9.12	0.00	3.9	96.1	0.0	2.01	0.60	0.70	0.84	3.7	0.009	1.04	0.0	0.04	17.43	0.00	2.277	8.24	0.68	3.8	96.2	0.0	2.37	0.35	0.61	0.73	0.70	5644	701	8	0	17	0	0	logfile
✔	6ZQi	11364	2021-12-01	2020-07-09	3.8	4.13	3.63	4.1	0.002	0.56	0.0	0.04	12.40	0.00	2.336	5.93	1.12	3.1	96.9	0.0	-2.14	0.67	0.78	0.85	4.1	0.003	0.79	0.0	0.05	15.51	0.00	2.217	11.66	0.93	4.5	95.5	0.0	-0.39	0.73	0.67	0.79	1.33	5032	655	4	0	1	0	0	logfile
✔	7BP3	30143	2021-12-01	2020-03-21	3.8	4.06	—	4.1	0.007	1.05	0.0	0.06	16.16	0.01	2.235	6.34	0.00	7.4	92.6	0.0	-4.77	0.48	0.75	0.86	4.1	0.015	1.50	1.0	0.05	18.19	0.01	2.076	22.85	0.78	5.4	94.6	0.0	-0.33	1.30	0.50	0.74	1.14	6080	788	2	0	0	0	0	logfile
✔	6W64	21552	2021-12-01	2020-03-16	3.9	4.06	—	4.0	0.003	0.58	0.0	0.04	13.75	0.00	2.196	9.67	1.29	7.0	92.9	0.1	0.30	0.74	0.70	0.86	4.0	0.004	0.75	0.0	0.04	18.16	0.01	2.143	18.48	0.39	8.6	91.4	0.0	-0.67	0.94	0.75	0.72	1.10	8505	928	3	56	0	0	0	logfile
✔	6BGi	7095	2021-12-01	2017-10-28	3.8	4.07	3.58	4.0	0.008	1.00	0.0	0.05	8.91	0.01	2.002	48.38	0.00	16.1	83.9	0.0	-5.29	0.47	0.64	0.86	4.0	0.003	0.86	0.0	0.04	14.87	0.00	2.139	16.06	0.52	11.2	88.8	0.0	-1.88	1.11	0.48	0.65	1.64	7774	1020	4	0	4	0	0	logfile
✔	7L7Q	23216	2021-12-01	2020-12-30	3.7	4.37	—	4.0	0.005	0.91	0.0	0.05	15.54	0.00	1.873	23.67	0.16	10.2	89.5	0.3	-4.40	0.84	0.81	0.86	4.1	0.004	0.94	0.0	0.05	17.56	0.00	2.094	21.82	0.16	8.4	91.6	0.0	-0.23	1.44	0.84	0.79	0.84	5619	687	3	0	0	0	0	logfile
✔	7oZP	13131	2021-12-01	2021-06-28	3.8	4.17	3.83	4.0	0.002	0.39	0.0	0.04	14.04	0.00	1.969	4.71	0.00	2.1	97.9	0.0	1.24	0.79	0.71	0.86	4.0	0.008	0.95	2.0	0.05	16.68	0.01	1.622	20.31	0.28	3.3	96.7	0.0	0.26	0.93	0.83	0.78	1.20	54330	6774	32	0	10	0	0	logfile
✘	7ARL	11886	2021-12-01	2020-10-25	3.2	3.44	—	3.5	0.003	0.70	0.0	0.05	13.12	0.00	2.378	3.27	0.00	4.6	95.4	0.0	-5.83	0.62	0.73	0.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9467	1256	9	0	6	0	0	logfile
✔	6PZA	20530	2021-12-01	2019-07-31	3.74	3.92	—	3.9	0.007	1.05	0.0	0.06	10.78	0.01	2.252	3.22	0.00	8.0	92.0	0.0	-4.29	0.51	0.50	0.87	3.8	0.011	1.09	1.0	0.04	15.29	0.01	2.186	9.72	1.30	5.9	94.1	0.0	0.20	1.26	0.63	0.80	0.86	9659	1441	3	0	2	0	0	logfile
✔	6J2Q	9771	2021-12-01	2019-01-02	3.8	3.95	—	3.9	0.002	0.40	0.0	0.04	7.17	0.00	2.202	6.56	0.00	5.5	94.4	0.1	-3.50	0.77	0.68	0.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	106311	13518	47	0	0	0	0	logfile

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