Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	3J9G	2699	2021-08-11	2015-01-16	3.5	2.75	—	3.5	0.011	1.34	0.0	0.06	10.86	0.01	2.365	1.93	0.00	3.6	95.7	0.7	-0.80	0.40	0.65	0.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	132930	16710	60	0	0	0	0	logfile
✔	3J9i	5623	2021-08-11	2015-02-02	3.3	3.34	2.96	3.2	0.034	3.61	574.0	0.23	18.10	0.03	1.922	5.25	9.27	8.0	90.1	1.9	-3.61	0.80	0.79	3.08	3.2	0.004	0.79	0.0	0.05	17.48	0.00	2.125	13.47	0.46	3.1	96.6	0.3	0.40	0.87	0.87	0.88	2.57	46228	5978	28	0	0	0	0	logfile
✔	3J9J	5778	2021-08-09	2015-02-02	3.275	3.52	3.19	3.6	0.015	1.09	0.0	0.09	9.35	0.01	2.266	2.70	0.00	3.3	94.5	2.2	-0.65	0.53	0.57	2.57	3.5	0.003	0.65	0.0	0.04	15.98	0.00	1.906	14.19	0.61	6.6	92.7	0.6	2.53	2.48	0.60	0.77	1.76	21068	1260	4	0	0	0	10624	logfile
✔	3J9K	2870	2021-08-10	2015-02-04	4.1	4.22	—	4.1	0.022	2.13	128.0	0.13	20.86	0.01	1.058	97.85	29.75	12.8	86.2	1.0	-3.18	0.68	0.68	—	4.1	0.003	0.74	0.0	0.04	13.59	0.00	2.096	15.52	0.02	5.1	94.8	0.2	-0.95	2.31	0.70	0.71	—	126512	10352	48	0	8304	0	0	logfile
✔	3J9L	2871	2021-08-09	2015-02-04	4.0	4.10	—	4.0	0.022	1.96	105.0	0.12	19.47	0.01	1.058	80.55	27.30	10.5	88.6	0.9	-4.09	0.66	0.68	—	4.0	0.048	3.14	45.0	0.12	19.52	0.02	1.798	94.55	3.21	39.7	58.2	2.1	-7.71	2.97	0.73	0.81	—	112951	8688	31	0	8320	0	0	logfile
✔	3J9M	2876	2021-08-18	2015-02-08	3.5	3.59	3.50	3.5	0.007	1.35	38.0	0.09	19.29	0.01	1.242	5.61	9.06	8.2	89.4	2.4	-1.72	0.66	0.76	1.82	3.5	0.006	0.79	2.0	0.04	18.28	0.01	1.507	14.73	0.29	6.8	92.6	0.6	0.05	0.92	0.70	0.80	1.51	158384	12902	97	2454	309	0	0	logfile
✔	3J9P	6267	2021-08-08	2015-02-14	4.24	2.59	—	4.1	0.009	1.85	4.0	0.07	17.68	0.01	2.113	25.49	4.64	10.2	88.2	1.6	-3.58	0.73	0.78	—	4.2	0.005	1.00	0.0	0.05	13.86	0.01	2.059	25.19	0.00	10.0	89.1	0.9	-1.88	1.24	0.74	0.81	—	16952	2240	4	0	0	0	0	logfile
✔	3J9Q	6270	2021-08-13	2015-02-17	3.5	3.51	—	3.5	0.008	1.16	0.0	0.06	14.05	0.00	2.284	4.53	8.68	19.1	75.1	5.8	-5.24	0.60	0.82	2.71	3.5	0.004	0.84	0.0	0.05	16.24	0.01	2.059	14.50	0.69	10.6	87.7	1.7	-1.83	1.45	0.61	0.82	2.55	99648	13224	48	0	0	0	0	logfile
✔	3J9R	6271	2021-08-13	2015-02-17	3.9	3.83	—	3.8	0.006	0.89	0.0	0.04	9.86	0.00	2.112	3.89	0.89	14.5	80.8	4.7	-5.43	0.59	0.82	2.58	3.8	0.005	0.76	0.0	0.04	15.87	0.01	2.066	14.28	0.50	8.8	90.2	1.0	-2.02	1.34	0.58	0.82	1.87	103824	13788	36	0	0	0	0	logfile
✔	3J9S	6272	2021-08-07	2015-02-19	2.6	3.83	—	3.5	0.020	1.78	0.0	0.12	18.55	0.01	0.216	24.62	6.86	1.3	98.0	0.8	1.97	0.68	0.76	3.15	3.5	0.003	0.65	0.0	0.04	17.22	0.00	1.195	8.40	1.14	1.4	98.6	0.0	1.48	1.61	0.71	0.90	3.39	9813	1191	3	0	15	315	0	logfile
✔	3J9W	6306	2021-08-11	2015-03-16	3.9	3.93	—	3.8	0.010	1.50	0.0	0.03	15.63	0.02	1.433	8.82	0.26	6.0	92.0	2.0	-1.66	0.74	0.72	0.72	3.8	0.005	0.73	1.0	0.04	17.70	0.00	2.068	17.45	1.13	7.2	92.2	0.6	-0.59	1.79	0.80	0.84	1.11	135425	5661	54	4675	0	0	0	logfile
✔	3J9X	6310	2021-08-10	2015-03-21	3.8	3.84	—	3.8	0.014	1.24	0.0	0.08	13.09	0.02	2.369	3.22	0.48	2.8	95.6	1.6	-0.65	0.51	0.57	0.47	3.7	0.004	0.75	0.0	0.04	16.53	0.01	2.084	21.00	0.54	3.0	97.0	0.0	1.92	1.31	0.63	0.79	2.19	70702	7424	60	696	0	0	0	logfile
✔	3J9Y	6311	2021-08-15	2015-03-23	3.9	3.83	—	3.9	0.006	0.84	0.0	0.04	15.12	0.02	0.974	10.17	3.21	10.9	85.6	3.4	-3.83	0.76	0.77	0.68	3.7	0.004	0.79	0.0	0.04	16.35	0.01	2.052	19.30	1.26	10.2	89.1	0.7	-1.96	2.27	0.79	0.85	0.80	148915	6657	58	4645	0	0	0	logfile
✔	3J9Z	6315	2021-08-18	2015-03-27	3.6	3.80	—	3.7	0.017	2.31	171.0	0.16	18.21	0.04	2.267	1.69	3.84	7.6	89.1	3.3	-2.82	0.56	0.39	0.14	3.7	0.005	0.76	0.0	0.04	17.03	0.01	1.977	18.65	0.98	10.1	89.3	0.6	-2.07	2.26	0.84	0.83	1.04	156714	7125	59	4717	1	0	0	logfile
✔	3JA7	6324	2021-08-11	2015-04-21	3.6	3.71	—	3.7	0.010	1.55	0.0	0.06	15.94	0.01	1.528	37.29	10.44	11.0	86.8	2.1	-4.92	0.77	0.82	1.86	3.6	0.004	0.80	0.0	0.04	16.15	0.01	2.216	11.06	0.41	5.8	93.6	0.6	-1.32	1.73	0.78	0.81	1.54	41280	5136	12	0	0	0	0	logfile
✘	3JA8	6338	2021-08-10	2015-05-09	3.8	3.83	—	3.8	0.014	1.58	0.0	0.06	10.98	0.01	1.749	28.41	0.37	7.9	91.0	1.1	-4.26	0.68	0.80	2.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29838	3786	12	0	6	0	0	logfile
✔	3JAC	6343	2021-08-08	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	56.86	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.69	0.0	0.07	13.90	0.01	1.928	75.14	0.00	24.3	74.3	1.4	-4.87	3.68	0.52	0.64	—	15741	1716	3	0	1038	0	0	logfile
✔	3JAD	6344	2021-08-08	2015-06-08	3.9	2.16	—	3.8	0.016	1.42	0.0	0.07	8.58	0.01	2.250	16.45	0.43	2.7	97.3	0.0	-2.13	0.68	0.72	0.33	2.7	0.003	0.86	0.0	0.05	12.92	0.00	2.159	16.05	0.17	4.1	95.9	0.0	0.76	1.26	0.70	0.77	0.39	12705	1685	10	0	15	0	0	logfile
✔	3JAE	6345	2021-08-08	2015-06-08	3.9	2.88	—	3.5	0.006	1.25	0.0	0.05	9.25	0.01	2.202	13.49	0.00	0.9	99.1	0.0	-1.69	0.70	0.75	1.87	3.2	0.003	0.87	0.0	0.04	13.53	0.00	2.095	16.54	0.24	3.2	96.8	0.0	0.54	0.94	0.72	0.82	1.65	12825	1690	10	0	10	0	0	logfile
✔	3JAF	6346	2021-08-08	2015-06-08	3.8	2.26	—	3.8	0.025	1.93	0.0	0.10	10.09	0.01	2.134	18.84	0.70	0.6	99.4	0.0	-0.82	0.69	0.71	1.52	3.8	0.003	1.02	0.0	0.04	13.99	0.00	2.153	19.14	0.14	2.0	98.0	0.0	0.82	1.83	0.72	0.81	1.46	13865	1710	10	0	15	0	0	logfile

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