Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5LMo	4074	2021-12-01	2016-08-01	4.3	4.71	4.30	4.3	0.009	1.47	50.0	0.12	20.86	0.01	0.865	18.47	20.40	10.6	85.8	3.6	-2.76	0.80	0.69	—	4.3	0.005	0.75	0.0	0.04	16.71	0.01	1.008	33.68	0.00	9.0	90.5	0.5	-1.75	2.17	0.87	0.84	—	54110	2622	29	1533	110	0	0	logfile
✔	5LMQ	4076	2021-12-01	2016-08-01	4.2	4.46	4.25	4.2	0.009	1.44	30.0	0.12	20.82	0.01	1.387	19.42	21.46	10.5	86.1	3.4	-2.56	0.80	0.76	—	4.2	0.005	0.76	0.0	0.04	16.78	0.01	1.816	30.88	0.05	9.1	90.4	0.5	-1.39	1.62	0.84	0.85	—	55841	2635	29	1612	66	0	0	logfile
✔	5LMR	4077	2021-12-01	2016-08-01	4.45	4.71	4.60	4.4	0.008	1.39	20.0	0.12	20.50	0.01	1.426	17.92	16.73	8.7	88.5	2.8	-2.16	0.79	0.74	—	4.4	0.008	0.80	0.0	0.04	16.87	0.01	1.978	36.60	0.05	9.4	90.1	0.5	-1.92	1.60	0.84	0.85	—	55662	2628	29	1609	4	0	0	logfile
✔	5LMT	4079	2021-12-01	2016-08-01	4.15	4.33	4.20	4.2	0.008	1.43	21.0	0.12	20.74	0.01	1.290	18.77	22.35	11.9	84.8	3.3	-2.73	0.77	0.76	—	4.1	0.006	0.82	0.0	0.04	16.60	0.01	1.824	28.21	0.00	8.9	90.8	0.3	-1.60	0.89	0.80	0.83	—	55776	2622	31	1612	88	0	0	logfile
✔	5LMU	4080	2021-12-01	2016-08-01	4.0	4.12	4.00	4.0	0.008	1.44	43.0	0.12	21.32	0.01	1.289	21.15	25.30	12.0	84.2	3.8	-2.57	0.73	0.79	—	4.0	0.008	0.89	1.0	0.04	17.65	0.01	1.707	26.90	0.61	7.0	92.4	0.6	-1.45	1.58	0.75	0.83	—	55195	2550	29	1612	82	0	0	logfile
✔	5LMV	4083	2021-12-02	2016-08-01	4.9	6.86	6.65	6.7	0.008	1.34	34.0	0.11	20.12	0.01	0.977	14.21	15.18	9.6	87.9	2.5	-1.98	0.70	0.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	59470	3124	30	1612	4	0	0	logfile
✔	5LY6	4118	2021-12-01	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.48	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.81	0.0	0.04	13.96	0.00	2.167	15.68	0.24	10.2	89.3	0.4	-2.62	3.61	0.40	0.76	—	3725	471	1	0	0	0	0	logfile
✔	5M5H	4155	2021-12-01	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.94	0.0	0.05	12.39	0.01	2.260	21.55	0.00	7.9	92.1	0.0	-1.85	2.19	0.15	0.13	—	1086	132	1	0	0	0	0	logfile
✔	5M6S	3451	2021-12-01	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.3	0.003	0.66	0.0	0.03	19.58	0.00	1.949	10.68	0.00	6.2	93.8	0.0	2.28	2.49	0.02	0.05	—	1593	98	1	0	0	0	793	logfile
✘	5MLV	3527	2021-12-01	2016-12-07	4.5	4.47	—	4.4	0.009	1.42	0.0	0.08	13.33	0.01	2.060	8.31	0.20	9.0	91.0	0.0	-4.85	0.67	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	56928	7218	36	6	24	0	0	logfile
✘	5MM2	3528	2021-12-01	2016-12-08	2.7	12.53	1.51	—	0.011	1.29	0.0	0.07	10.78	0.01	1.325	19.72	0.54	12.1	87.0	0.8	-3.96	-0.08	-0.03	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6605	854	3	0	0	0	0	logfile
✔	5MM4	3529	2021-12-01	2016-12-08	4.5	4.77	—	4.7	0.008	1.13	0.0	0.06	12.07	0.01	2.041	12.45	0.10	10.8	89.2	0.0	-4.68	0.40	0.73	—	4.7	0.003	0.76	0.0	0.05	14.36	0.01	1.992	21.33	0.00	7.4	92.6	0.0	-2.18	1.76	0.41	0.73	—	9776	1236	6	1	5	0	0	logfile
✔	5MMJ	3532	2021-12-01	2016-12-10	3.6	3.88	—	3.6	0.008	1.15	0.0	0.05	16.66	0.01	1.774	10.60	7.28	4.9	94.8	0.3	-3.46	0.92	0.86	1.28	3.6	0.008	0.80	0.0	0.04	16.61	0.01	1.228	23.51	1.72	6.5	93.4	0.1	-0.70	1.60	0.92	0.86	1.11	55315	2806	31	1484	359	0	0	logfile
✘	5MPS	3539	2021-12-02	2016-12-18	3.85	4.03	—	3.9	0.008	1.40	13.0	0.09	15.52	0.01	1.421	7.70	2.50	8.5	90.6	0.9	-2.11	0.73	0.82	1.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	58929	6718	36	339	99	0	0	logfile
✔	5MS1	3562	2021-12-01	2016-12-29	4.25	4.22	—	4.2	0.014	1.51	0.0	0.07	9.30	0.01	2.413	2.10	0.00	5.5	93.5	1.1	-0.81	0.37	0.76	—	4.2	0.004	0.73	0.0	0.05	12.70	0.00	2.117	12.11	0.00	4.4	95.6	0.0	-0.65	1.54	0.47	0.85	—	4350	556	2	0	0	0	0	logfile
✔	5MSH	3565	2021-12-01	2017-01-04	4.25	3.96	—	20.0	0.014	1.56	0.0	0.07	9.56	0.01	2.323	3.07	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	3.7	0.009	1.40	0.0	0.05	13.33	0.01	2.113	15.72	0.00	6.4	93.4	0.2	-0.82	2.65	0.04	0.13	—	4287	551	2	0	0	0	0	logfile
✔	5MZ6	3583	2021-12-01	2017-01-31	3.8	3.83	—	3.8	0.005	1.05	0.0	0.05	11.57	0.01	2.269	8.71	0.70	5.2	94.8	0.0	-5.37	0.65	0.71	2.07	3.8	0.003	0.77	0.0	0.04	15.94	0.00	2.192	15.97	0.70	3.5	96.5	0.0	-0.05	0.82	0.75	0.77	0.94	8401	1092	2	0	0	0	0	logfile
✔	5ND4	3622	2021-12-01	2017-03-07	4.4	5.55	—	5.5	0.009	1.49	11.0	0.20	21.69	0.01	1.678	26.62	15.57	14.5	77.1	8.3	-4.90	0.37	0.37	—	5.4	0.004	0.91	0.0	0.05	15.31	0.01	1.348	29.15	0.10	7.9	91.6	0.5	-2.12	1.92	0.48	0.72	—	9435	1175	6	1	6	0	0	logfile
✔	5NJG	3654	2021-12-01	2017-03-28	3.78	3.88	—	3.8	0.014	1.31	0.0	0.07	11.42	0.01	2.183	8.78	0.68	6.9	92.9	0.2	-4.16	0.68	0.82	2.92	3.8	0.004	0.77	0.0	0.04	15.52	0.01	2.154	12.70	0.34	4.7	95.1	0.2	0.18	1.99	0.65	0.82	2.07	8038	1020	8	0	4	0	0	logfile
✔	5oH0	3809	2021-12-01	2017-07-13	4.2	4.36	—	4.3	0.003	0.75	0.0	0.05	8.94	0.00	2.295	3.32	0.00	1.9	98.1	0.0	-3.74	0.64	0.84	—	4.2	0.003	0.53	0.0	0.04	10.58	0.00	2.225	5.25	0.00	2.8	97.2	0.0	-2.07	0.63	0.64	0.86	—	6588	942	6	0	0	0	0	logfile

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