Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6HN4	0246	2023-04-20	2018-09-14	4.2	4.43	—	4.1	0.007	1.50	2.0	0.07	9.75	0.01	2.187	6.18	0.00	6.9	91.4	1.8	-2.18	0.73	0.70	—	4.2	0.003	0.72	0.0	0.05	11.68	0.00	2.112	13.53	0.00	7.7	92.3	0.0	-0.37	1.14	0.76	0.77	—	5702	700	2	0	6	0	0	logfile
✔	6HN5	0247	2023-04-20	2018-09-14	3.2	3.48	—	3.3	0.012	1.20	0.0	0.07	9.75	0.01	2.281	7.43	0.12	10.8	89.2	0.0	-3.94	0.76	0.77	3.25	3.3	0.003	0.70	0.0	0.05	13.19	0.00	2.182	10.21	0.35	7.3	92.7	0.0	-2.09	0.77	0.78	0.80	2.25	7869	953	7	0	11	0	0	logfile
✔	6HRA	0257	2023-04-21	2018-09-26	3.7	3.89	3.68	3.8	0.007	0.93	0.0	0.05	9.85	0.01	2.227	6.64	0.18	7.4	92.6	0.0	-5.34	0.70	0.83	2.52	3.8	0.003	0.72	0.0	0.04	13.93	0.00	2.089	12.23	1.06	4.9	95.1	0.0	-0.84	1.64	0.71	0.85	1.41	10818	1450	5	0	3	0	0	logfile
✔	6HRB	0258	2023-04-21	2018-09-26	4.0	4.20	3.96	4.0	0.008	0.96	0.0	0.05	9.28	0.01	2.186	6.75	0.26	7.2	92.8	0.0	-4.97	0.74	0.84	—	4.0	0.003	0.73	0.0	0.04	13.52	0.00	2.051	13.69	0.26	3.4	96.6	0.0	-0.23	1.28	0.74	0.84	—	10787	1447	5	0	1	0	0	logfile
✔	6HS7	0264	2023-04-19	2018-09-28	4.6	3.02	4.27	4.3	0.006	1.00	1.0	0.05	14.59	0.01	2.156	6.39	0.04	10.5	89.5	0.0	-5.02	0.77	0.69	—	4.3	0.003	0.72	0.0	0.04	14.05	0.00	2.131	10.59	0.07	7.9	92.1	0.0	-2.30	0.94	0.79	0.71	—	52890	6905	25	0	0	0	0	logfile
✘	6HU7	0273	2023-04-20	2018-10-05	2.8	2.82	2.83	2.9	0.008	0.78	0.0	0.05	9.81	0.01	2.130	10.26	0.36	2.7	96.8	0.5	-3.47	0.49	0.84	4.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4890	609	7	0	0	0	0	logfile
✔	6HUJ	0279	2023-04-23	2018-10-08	3.04	3.16	3.04	3.1	0.006	0.88	0.0	0.06	8.77	0.01	2.265	4.61	0.00	4.0	96.0	0.0	-4.37	0.76	0.83	4.82	3.1	0.003	0.57	0.0	0.04	14.01	0.00	2.165	7.71	0.12	2.8	97.2	0.0	0.13	0.66	0.76	0.86	4.13	15255	1812	15	0	35	0	0	logfile
✔	6HUK	0280	2023-04-23	2018-10-08	3.69	3.75	3.64	3.7	0.006	1.05	0.0	0.06	9.60	0.01	2.222	4.96	0.00	4.0	96.0	0.0	-3.20	0.71	0.82	3.81	3.7	0.003	0.64	0.0	0.04	14.70	0.00	2.153	11.21	0.25	3.2	96.8	0.0	-0.25	0.81	0.72	0.83	3.30	15300	1815	16	0	34	0	0	logfile
✘	6HUo	0282	2023-04-23	2018-10-09	3.26	3.38	3.25	3.3	0.006	0.89	0.0	0.06	8.62	0.01	2.257	4.69	0.00	3.8	96.2	0.0	-4.15	0.74	0.83	4.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15227	1808	16	0	35	0	0	logfile
✔	6HUP	0283	2023-04-23	2018-10-09	3.58	3.70	3.52	3.6	0.013	1.19	0.0	0.08	8.93	0.01	2.251	5.90	0.00	4.9	95.1	0.0	-3.42	0.72	0.85	3.56	3.6	0.003	0.63	0.0	0.04	14.77	0.00	2.148	11.20	0.43	3.7	96.3	0.0	-0.24	1.95	0.73	0.85	3.03	15265	1808	17	0	37	0	0	logfile
✔	6HV8	0287	2023-04-21	2018-10-10	4.4	4.51	—	4.4	0.009	1.62	2.0	0.08	10.20	0.01	1.472	8.97	1.31	22.1	77.3	0.6	-4.84	0.74	0.72	—	4.4	0.003	0.84	0.0	0.05	12.78	0.00	2.083	14.58	0.00	14.2	85.8	0.0	-2.84	1.02	0.74	0.71	—	9206	1184	2	0	2	0	0	logfile
✘	6HYD	0308	2023-04-22	2018-10-19	3.9	4.01	—	4.0	0.004	0.85	0.0	0.05	9.33	0.01	2.319	2.63	0.24	5.7	94.0	0.3	-6.69	0.74	0.77	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12168	1543	1	0	31	0	0	logfile
✔	6HYP	0309	2023-04-22	2018-10-22	4.4	4.53	—	4.4	0.003	0.72	0.0	0.05	8.72	0.00	1.943	1.67	0.34	7.3	92.2	0.4	-5.99	0.75	0.69	—	4.4	0.004	0.79	0.0	0.04	8.88	0.00	1.995	5.56	0.00	13.4	86.3	0.2	-1.62	0.63	0.77	0.75	—	12392	2082	1	0	192	0	0	logfile
✔	6HZ5	0311	2023-04-24	2018-10-22	4.2	4.28	4.18	4.3	0.009	0.97	0.0	0.05	14.60	0.01	1.960	2.94	0.70	2.7	97.3	0.0	-0.55	0.79	0.76	—	4.2	0.003	0.58	0.0	0.04	14.66	0.00	1.803	11.78	0.05	4.9	95.1	0.0	0.00	1.88	0.81	0.78	—	67582	4120	26	6	12	0	33368	logfile
✔	6HZ6	0312	2023-04-24	2018-10-22	4.3	4.35	4.18	4.3	0.010	1.00	0.0	0.05	14.61	0.01	1.941	3.48	0.59	2.8	97.2	0.0	-0.71	0.81	0.77	—	4.3	0.003	0.59	0.0	0.04	14.63	0.00	1.839	13.61	0.03	4.2	95.8	0.0	-0.20	1.90	0.82	0.78	—	67582	4120	26	6	12	0	33368	logfile
✘	6HZ7	0313	2023-04-24	2018-10-22	4.3	4.43	4.32	4.3	0.008	0.97	0.0	0.05	14.60	0.01	1.959	2.86	0.59	2.9	97.1	0.0	-0.47	0.81	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67582	4120	26	6	12	0	33368	logfile
✔	6HZ8	0314	2023-04-24	2018-10-22	4.3	4.47	4.31	4.4	0.009	0.99	0.0	0.05	14.59	0.01	1.943	3.29	0.59	2.7	97.3	0.0	-0.48	0.77	0.73	—	4.4	0.005	0.67	0.0	0.04	14.60	0.00	1.739	14.95	0.00	5.3	94.7	0.0	-0.46	1.89	0.79	0.76	—	67582	4120	26	6	12	0	33368	logfile
✔	6HZ9	0315	2023-04-24	2018-10-22	4.8	4.94	4.76	4.8	0.009	1.01	0.0	0.05	14.59	0.01	1.957	3.22	0.51	2.9	97.1	0.0	-0.60	0.83	0.76	—	4.8	0.004	0.62	0.0	0.04	14.32	0.00	1.779	15.48	0.00	5.2	94.8	0.0	-0.16	2.82	0.84	0.78	—	67582	4120	26	6	12	0	33368	logfile
✔	6i1X	0326	2023-04-20	2018-10-30	3.7	3.83	—	3.8	0.013	1.81	34.0	0.10	14.94	0.01	0.458	50.06	4.35	7.5	90.6	1.9	-3.51	0.50	0.32	0.28	3.8	0.003	0.77	0.0	0.05	16.37	0.00	2.134	17.07	0.28	4.8	95.0	0.2	-0.88	1.06	0.65	0.60	0.83	54915	7290	15	0	0	0	0	logfile
✔	6i1Y	0327	2023-04-20	2018-10-30	3.4	3.52	—	3.4	0.015	2.01	16.0	0.10	13.31	0.02	1.301	75.63	0.72	10.9	85.8	3.3	-5.20	0.79	0.83	1.55	3.4	0.004	0.72	0.0	0.05	16.10	0.01	2.139	15.53	0.48	6.4	93.3	0.2	-1.66	1.47	0.77	0.79	1.57	56520	7440	15	0	0	0	0	logfile

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