Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6GZ4	0099	2021-10-15	2018-07-03	3.6	3.89	—	3.6	0.004	0.81	0.0	0.04	14.04	0.01	1.337	5.56	0.22	8.9	90.9	0.2	-3.81	0.80	0.74	1.83	3.6	0.007	0.80	0.0	0.04	16.45	0.01	1.232	17.96	1.07	10.5	89.3	0.2	-1.44	1.31	0.87	0.87	1.53	225601	12699	103	5759	333	0	0	logfile
✔	6GZ5	0100	2021-10-15	2018-07-03	3.5	3.86	—	3.6	0.003	0.78	0.0	0.04	13.93	0.01	1.375	5.29	0.15	8.6	91.2	0.2	-3.79	0.79	0.72	1.70	3.6	0.006	0.74	1.0	0.04	16.28	0.01	1.316	16.48	0.87	9.8	90.0	0.1	-1.08	0.90	0.86	0.87	1.53	225601	12699	105	5759	333	0	0	logfile
✔	6GZQ	0101	2021-10-08	2018-07-04	3.28	3.72	—	3.6	0.017	1.33	0.0	0.06	17.34	0.01	1.769	5.58	0.58	15.1	84.4	0.5	-5.41	0.79	0.83	2.31	3.6	0.008	0.89	4.0	0.04	17.27	0.01	1.215	13.76	0.60	12.7	87.2	0.2	-3.59	0.67	0.80	0.83	1.43	144138	5820	53	4540	0	0	0	logfile
✔	6H05	0108	2021-10-07	2018-07-06	2.9	3.15	—	3.5	0.016	1.09	0.0	0.07	9.74	0.01	0.426	17.80	0.00	8.5	91.5	0.0	-5.50	0.36	0.13	0.50	3.2	0.009	1.07	1.0	0.05	15.36	0.01	1.522	22.59	1.65	5.0	95.0	0.0	-1.51	2.10	0.61	0.53	0.98	44544	5664	24	0	0	0	0	logfile
✔	6H25	0128	2021-10-05	2018-07-13	3.8	3.89	—	3.9	0.006	1.10	1.0	0.06	10.98	0.01	1.101	12.74	1.51	5.7	93.9	0.4	-2.77	0.49	0.63	1.51	3.9	0.003	0.72	0.0	0.04	16.09	0.00	2.116	10.04	0.53	5.4	94.6	0.0	0.00	1.59	0.71	0.82	1.47	22138	2971	12	6	0	0	0	logfile
✔	6H3C	0132	2021-10-07	2018-07-18	3.9	3.99	3.83	3.9	0.020	1.86	0.0	0.10	10.54	0.01	1.965	1.58	0.00	5.3	94.2	0.4	-0.37	0.73	0.68	1.52	3.9	0.016	1.14	3.0	0.04	14.81	0.01	1.738	13.61	0.22	7.7	91.9	0.3	-0.74	1.05	0.76	0.71	1.65	49982	3146	14	0	2	2	24860	logfile
✔	6H3i	0133	2021-10-05	2018-07-18	3.5	3.59	—	3.5	0.009	0.92	0.0	0.05	10.08	0.01	2.012	39.37	0.40	21.4	78.4	0.2	-5.64	0.78	0.86	4.47	3.5	0.003	0.60	0.0	0.04	13.43	0.00	1.998	49.45	0.18	17.1	82.8	0.1	-4.11	2.53	0.78	0.86	3.18	20599	2597	3	0	0	0	53	logfile
✔	6H3J	0134	2021-10-04	2018-07-18	3.7	3.83	—	3.7	0.007	0.87	0.0	0.05	10.17	0.00	2.025	43.22	0.05	23.8	76.2	0.0	-6.63	0.77	0.85	3.89	3.7	0.002	0.59	0.0	0.04	13.50	0.00	1.935	54.13	0.23	16.1	83.9	0.0	-5.01	2.69	0.77	0.85	2.73	20301	2511	3	0	0	0	212	logfile
✔	6H3L	0135	2021-10-06	2018-07-19	4.2	4.88	—	3.9	0.015	1.70	0.0	0.08	11.55	0.01	2.124	4.47	0.06	7.7	91.4	0.9	-1.43	0.92	0.69	—	3.7	0.004	0.66	0.0	0.04	13.35	0.00	1.867	21.12	0.00	7.7	92.2	0.1	-2.25	1.41	0.90	0.75	—	29319	1881	3	0	0	0	14388	logfile
✔	6H3N	0136	2021-10-06	2018-07-19	3.25	3.45	—	3.4	0.015	1.52	0.0	0.07	10.78	0.01	2.457	1.23	0.00	4.7	94.6	0.7	-0.43	0.77	0.79	4.55	3.4	0.003	0.57	0.0	0.04	14.78	0.00	1.907	5.90	0.19	4.3	95.7	0.0	-0.20	1.48	0.73	0.78	4.03	29319	1881	3	0	0	0	14388	logfile
✔	6H4N	0137	2021-10-09	2018-07-22	3.0	3.20	—	3.1	0.007	0.96	4.0	0.05	14.51	0.01	0.418	5.95	0.74	10.1	89.4	0.5	-4.18	0.86	0.87	3.31	3.1	0.004	0.65	0.0	0.04	15.32	0.01	2.045	11.53	4.10	9.8	90.1	0.1	-1.31	1.22	0.87	0.90	2.41	147282	6188	57	4636	0	0	0	logfile
✔	6H5i	0140	2021-10-03	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.63	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.8	0.011	1.09	1.0	0.04	15.65	0.01	1.554	23.80	0.08	4.8	95.2	0.0	0.00	2.11	0.40	0.29	0.25	43900	5392	26	0	0	0	0	logfile
✔	6H5Q	0141	2021-10-07	2018-07-25	3.3	3.43	—	3.4	0.010	1.14	0.0	0.06	11.79	0.01	1.628	11.70	1.54	4.0	96.0	0.0	-4.31	0.46	0.87	4.00	3.4	0.003	0.67	0.0	0.04	15.05	0.00	2.181	10.93	0.51	3.7	96.3	0.0	0.60	0.65	0.50	0.88	2.46	46650	5715	30	90	0	0	0	logfile
✔	6H5S	0142	2021-10-07	2018-07-25	3.3	3.45	—	3.4	0.010	1.12	0.0	0.06	10.77	0.01	1.817	7.18	0.65	7.3	92.7	0.0	-5.39	0.51	0.88	4.96	3.4	0.003	0.62	0.0	0.04	15.19	0.00	2.158	8.99	0.26	2.9	97.0	0.0	-0.13	0.65	0.53	0.89	3.31	44700	5445	30	90	0	0	0	logfile
✔	6H61	0143	2021-10-03	2018-07-25	4.02	4.20	3.87	4.0	0.007	0.84	0.0	0.05	9.67	0.00	2.107	14.48	0.18	9.5	90.5	0.0	-2.98	0.62	0.78	—	4.0	0.004	0.62	0.0	0.04	11.96	0.00	1.991	28.53	0.00	10.0	90.0	0.0	0.40	1.87	0.64	0.78	—	9912	660	4	30	1	0	4057	logfile
✔	6H66	0145	2021-10-03	2018-07-26	4.16	4.23	3.99	4.2	0.008	0.88	0.0	0.05	9.41	0.01	2.070	15.41	0.17	10.4	89.4	0.2	-3.09	0.61	0.76	—	4.2	0.003	0.65	0.0	0.04	11.99	0.00	2.013	24.32	0.00	8.8	91.2	0.0	0.29	1.89	0.62	0.78	—	10017	667	4	30	1	0	4120	logfile
✔	6H67	0146	2021-10-06	2018-07-26	3.6	3.68	—	3.6	0.006	0.87	0.0	0.06	10.79	0.01	2.050	5.44	0.05	7.5	92.5	0.0	-4.14	0.68	0.72	2.07	3.6	0.007	0.72	0.0	0.04	15.69	0.01	1.929	12.36	0.38	6.2	93.8	0.0	-1.35	3.28	0.69	0.74	1.47	33803	4140	22	43	7	0	0	logfile
✔	6H68	0147	2021-10-07	2018-07-26	4.6	4.70	—	4.6	0.005	0.84	0.0	0.05	11.37	0.01	2.243	6.67	0.05	7.3	92.7	0.0	-3.73	0.72	0.68	—	4.6	0.004	0.73	0.0	0.04	14.29	0.01	1.999	18.14	0.05	6.9	93.1	0.0	-1.05	1.86	0.74	0.73	—	37103	4497	22	67	6	0	0	logfile
✔	6H6B	0148	2021-10-03	2018-07-26	3.4	3.13	—	3.5	0.008	1.10	0.0	0.20	8.13	0.00	2.530	5.82	0.00	14.3	85.7	0.0	-4.80	0.44	0.73	5.60	3.2	0.005	0.90	0.0	0.18	11.45	0.00	2.137	6.56	0.25	18.0	82.0	0.0	-3.84	1.14	0.43	0.78	3.92	8060	580	10	0	0	0	4100	logfile
✔	6H6E	0149	2021-10-03	2018-07-27	3.95	3.43	—	3.8	0.021	1.74	1.0	0.10	10.97	0.01	1.834	1.30	0.01	1.9	97.9	0.3	0.48	0.79	0.80	1.58	3.7	0.004	0.74	0.0	0.04	16.32	0.01	1.967	14.61	0.36	3.0	96.9	0.1	0.96	1.54	0.79	0.81	1.36	112922	14231	6	0	0	0	0	logfile

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