Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6H3i	0133	2022-07-04	2018-07-18	3.5	3.59	—	3.5	0.009	0.92	0.0	0.05	10.08	0.01	2.012	39.59	0.40	21.4	78.4	0.2	-5.64	0.78	0.86	4.47	3.5	0.010	0.93	1.0	0.04	13.26	0.00	2.010	52.82	0.00	21.1	78.8	0.1	-4.42	2.52	0.78	0.87	3.45	20599	2597	3	0	0	0	53	logfile
✔	6H3J	0134	2022-07-04	2018-07-18	3.7	3.83	—	3.7	0.007	0.87	0.0	0.05	10.17	0.00	2.025	43.43	0.05	23.8	76.2	0.0	-6.63	0.77	0.85	3.89	3.7	0.005	0.65	0.0	0.04	13.39	0.00	1.860	56.31	0.32	21.3	78.7	0.0	-4.95	2.68	0.78	0.86	2.86	20301	2511	3	0	0	0	212	logfile
✔	6H3L	0135	2022-07-06	2018-07-19	4.2	4.88	—	3.9	0.015	1.70	0.0	0.08	11.55	0.01	2.124	6.00	0.06	7.7	91.4	0.9	-1.43	0.92	0.69	—	3.7	0.005	0.73	0.0	0.04	13.32	0.01	1.925	24.36	0.00	10.2	89.6	0.2	-2.30	1.35	0.91	0.77	—	29319	1881	3	0	0	0	14388	logfile
✔	6H3N	0136	2022-07-06	2018-07-19	3.25	3.45	—	3.4	0.015	1.52	0.0	0.07	10.78	0.01	2.457	2.39	0.00	4.7	94.6	0.7	-0.43	0.77	0.79	4.55	3.4	0.004	0.60	0.0	0.04	14.73	0.00	2.076	6.45	0.06	5.7	94.3	0.0	-0.21	1.46	0.72	0.77	4.06	29319	1881	3	0	0	0	14388	logfile
✔	6H4N	0137	2022-07-08	2018-07-22	3.0	3.20	—	3.1	0.007	0.96	4.0	0.05	14.51	0.01	0.418	6.04	0.74	10.1	89.4	0.5	-4.18	0.86	0.87	3.31	3.1	0.005	0.66	0.0	0.04	15.36	0.01	2.022	11.24	4.24	9.7	90.2	0.1	-1.35	1.21	0.87	0.90	2.49	147282	6188	57	4636	0	0	0	logfile
✔	6H5i	0140	2022-07-02	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.64	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.8	0.005	0.83	0.0	0.04	15.12	0.01	1.992	18.45	0.63	4.7	95.3	0.0	0.75	1.92	0.38	0.26	0.19	43900	5392	26	0	0	0	0	logfile
✔	6H5Q	0141	2022-07-07	2018-07-25	3.3	3.43	—	3.4	0.010	1.14	0.0	0.06	11.79	0.01	1.628	11.72	1.54	4.0	96.0	0.0	-4.31	0.46	0.87	4.00	3.4	0.004	0.69	0.0	0.04	15.04	0.01	2.102	11.31	0.70	3.8	96.2	0.0	0.34	0.62	0.49	0.89	2.74	46650	5715	30	90	0	0	0	logfile
✔	6H5S	0142	2022-07-07	2018-07-25	3.3	3.45	—	3.4	0.010	1.12	0.0	0.06	10.77	0.01	1.817	7.18	0.65	7.3	92.7	0.0	-5.39	0.51	0.88	4.96	3.4	0.004	0.63	0.0	0.04	14.96	0.00	2.120	8.98	0.19	3.6	96.4	0.0	-0.19	0.63	0.53	0.90	3.43	44700	5445	30	90	0	0	0	logfile
✔	6H61	0143	2022-07-03	2018-07-25	4.02	4.20	3.87	4.0	0.007	0.84	0.0	0.05	9.67	0.00	2.107	14.83	0.18	9.5	90.5	0.0	-2.98	0.62	0.78	—	4.0	0.002	0.57	0.0	0.04	12.00	0.00	2.087	22.68	0.00	6.1	93.9	0.0	0.63	1.83	0.63	0.77	—	9912	660	4	30	1	0	4057	logfile
✔	6H66	0145	2022-07-03	2018-07-26	4.16	4.23	3.99	4.2	0.008	0.88	0.0	0.05	9.41	0.01	2.070	15.50	0.17	10.4	89.4	0.2	-3.09	0.61	0.76	—	4.2	0.002	0.63	0.0	0.04	11.99	0.00	2.063	21.64	0.00	7.8	92.2	0.0	0.56	1.86	0.62	0.77	—	10017	667	4	30	1	0	4120	logfile
✘	6H67	0146	2022-07-06	2018-07-26	3.6	3.68	—	3.6	0.006	0.86	0.0	0.05	10.69	0.01	1.182	5.49	0.05	7.5	92.5	0.0	-4.14	0.68	0.72	2.07	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33803	4140	22	43	7	0	0	logfile
✘	6H68	0147	2022-07-07	2018-07-26	4.6	4.70	—	4.6	0.005	0.83	0.0	0.05	11.27	0.01	1.182	6.70	0.05	7.3	92.7	0.0	-3.73	0.72	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37103	4497	22	67	6	0	0	logfile
✔	6H6B	0148	2022-07-03	2018-07-26	3.4	3.13	—	3.5	0.008	1.10	0.0	0.20	8.13	0.00	2.530	5.82	0.00	14.3	85.7	0.0	-4.80	0.44	0.74	5.60	3.2	0.005	0.91	0.0	0.18	11.69	0.00	2.137	6.56	0.50	19.6	80.4	0.0	-4.04	1.83	0.42	0.78	3.27	8060	580	10	0	0	0	4100	logfile
✔	6H6E	0149	2022-07-03	2018-07-27	3.95	3.43	—	3.8	0.021	1.74	1.0	0.10	10.97	0.01	1.834	1.98	0.01	1.9	97.9	0.3	0.48	0.79	0.80	1.58	3.8	0.003	0.73	0.0	0.04	16.25	0.00	2.014	14.91	0.25	3.0	96.9	0.1	0.94	1.89	0.79	0.81	1.48	112922	14231	6	0	0	0	0	logfile
✔	6H6F	0150	2022-07-04	2018-07-27	3.72	2.83	—	3.6	0.020	1.68	1.0	0.09	10.88	0.01	2.182	1.44	0.00	1.7	98.1	0.2	0.96	0.83	0.77	1.63	3.5	0.004	0.68	0.0	0.04	15.54	0.00	2.058	13.86	0.36	3.4	96.6	0.0	1.07	0.91	0.84	0.78	1.50	114303	14388	6	0	0	0	0	logfile
✘	6HA1	0176	2022-07-07	2018-08-07	3.1	3.55	—	3.3	0.007	1.09	0.0	0.06	17.10	0.01	1.219	7.14	0.90	8.8	90.7	0.6	-3.85	0.78	0.79	2.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	140824	5299	52	4622	1	0	0	logfile
✘	6HA8	0177	2022-07-08	2018-08-07	3.5	3.62	—	3.6	0.009	1.29	1.0	0.06	17.02	0.01	1.219	7.72	0.87	9.2	90.4	0.5	-3.94	0.78	0.79	1.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	146404	6052	55	4610	3	0	0	logfile
✘	6HBU	0190	2022-07-03	2018-08-13	3.09	3.04	—	3.1	0.009	1.18	0.0	0.06	11.06	0.01	1.965	4.99	0.00	4.9	94.6	0.5	-5.40	0.75	0.86	5.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9146	1168	4	0	4	0	0	logfile
✔	6HCG	0193	2022-07-05	2018-08-15	4.3	3.90	4.21	3.9	0.011	1.31	0.0	0.07	10.57	0.01	1.943	35.63	0.00	9.9	90.1	0.0	-4.43	0.82	0.73	—	3.7	0.003	0.72	0.0	0.04	12.48	0.00	2.065	16.01	0.01	7.3	92.7	0.0	-1.75	2.11	0.84	0.76	—	85185	11295	45	0	0	0	0	logfile
✔	6HCo	0196	2022-07-03	2018-08-15	3.58	4.08	—	3.7	0.009	1.04	0.0	0.06	10.24	0.01	2.082	7.89	0.45	7.9	92.1	0.0	-4.59	0.65	0.75	1.63	3.7	0.004	0.76	0.0	0.04	12.87	0.00	2.131	15.98	0.22	6.2	93.8	0.0	-0.39	1.46	0.67	0.82	2.18	12338	1576	8	0	5	0	0	logfile

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