Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5LKi	4068	2023-04-20	2016-07-22	3.46	3.72	—	3.5	0.013	1.24	5.0	0.06	10.71	0.01	0.579	39.51	0.18	7.7	91.7	0.6	-4.39	0.65	0.79	2.37	3.5	0.004	0.83	0.0	0.04	15.10	0.00	2.088	15.46	0.70	7.1	92.5	0.4	0.24	0.81	0.63	0.80	1.65	55415	7135	5	0	0	0	0	logfile
✔	6UZ0	20949	2023-04-21	2019-11-14	3.24	3.60	—	3.6	0.022	1.38	5.0	0.18	17.79	0.01	0.584	27.88	2.73	7.5	91.5	1.0	-2.63	0.48	0.76	1.87	3.6	0.004	0.77	0.0	0.04	17.62	0.00	2.151	12.64	0.42	6.8	92.8	0.4	-0.08	0.66	0.46	0.77	1.04	9557	1138	5	0	26	0	0	logfile
✔	7PBX	13308	2023-04-21	2021-08-02	3.43	3.70	3.43	3.1	0.032	2.53	206.0	0.21	19.43	0.02	0.597	32.75	11.71	3.1	95.3	1.6	1.29	0.69	0.65	1.83	3.2	0.004	0.77	0.0	0.05	17.15	0.00	1.823	14.67	0.32	4.7	95.3	0.1	1.26	1.42	0.90	0.87	2.10	59472	8015	35	0	28	0	0	logfile
✔	7WCo	32426	2023-04-21	2021-12-20	3.8	3.89	—	3.9	0.008	1.13	0.0	0.06	11.02	0.01	0.599	4.59	0.53	14.2	85.8	0.0	-5.43	0.56	0.85	2.78	3.9	0.004	0.79	0.0	0.05	15.45	0.01	2.183	9.17	0.63	8.8	91.2	0.0	-2.39	1.57	0.56	0.85	2.86	8950	1195	15	0	0	0	0	logfile
✔	5G05	3388	2023-04-22	2016-03-16	3.4	3.84	—	3.5	0.016	1.81	55.0	0.10	18.98	0.01	0.612	56.69	17.76	4.5	93.6	1.8	-0.14	0.85	0.76	1.42	3.5	0.003	0.84	0.0	0.04	17.34	0.00	2.093	16.82	0.41	4.9	94.6	0.5	0.75	3.20	0.89	0.84	1.25	63181	8027	21	0	3	0	0	logfile
✔	6YAM	10761	2023-04-23	2020-03-12	3.6	3.47	—	3.5	0.021	2.06	55.0	0.12	15.03	0.02	0.634	17.64	3.01	10.8	85.2	4.0	-4.49	0.39	0.52	0.80	3.4	0.003	0.74	0.0	0.04	16.51	0.00	2.048	11.35	0.48	9.5	90.2	0.3	-1.76	1.54	0.45	0.63	1.12	118536	9811	51	1863	5	0	0	logfile
✔	8EJL	28186	2023-04-26	2022-09-17	3.9	4.30	3.90	4.1	0.005	0.54	0.0	0.04	11.63	0.00	0.636	9.14	3.04	2.2	97.8	0.0	1.75	0.68	0.85	1.79	4.1	0.004	0.67	0.0	0.04	14.77	0.00	2.108	10.38	0.37	2.3	97.7	0.0	2.24	0.60	0.68	0.85	1.21	22155	3095	30	0	0	0	0	logfile
✔	7PBJ	13293	2023-04-21	2021-08-02	3.4	3.54	3.40	3.2	0.018	2.20	140.0	0.13	19.50	0.01	0.650	29.74	11.71	2.5	96.9	0.6	1.69	0.71	0.67	2.07	3.2	0.004	0.70	0.0	0.04	17.42	0.00	1.896	14.50	0.24	3.7	96.3	0.1	0.78	2.34	0.89	0.86	2.01	59486	8015	42	0	28	14	0	logfile
✔	7PGV	13400	2023-04-22	2021-08-16	3.4	3.84	3.63	3.7	0.007	0.78	0.0	0.04	27.38	0.01	0.678	14.15	0.42	3.7	96.3	0.0	0.44	0.73	0.65	2.04	3.7	0.005	0.56	0.0	0.03	28.48	0.00	1.920	36.24	1.12	4.5	95.5	0.0	1.70	0.60	0.81	0.87	1.31	13484	856	11	290	0	0	713	logfile
✔	7PH5	13407	2023-04-22	2021-08-16	4.0	4.33	4.10	4.2	0.007	0.78	0.0	0.04	27.45	0.01	0.679	13.94	0.42	3.7	96.3	0.0	0.43	0.72	0.65	—	4.2	0.006	0.63	0.0	0.03	27.57	0.00	1.857	44.35	0.98	5.4	94.6	0.0	1.19	2.40	0.82	0.86	—	13483	856	11	290	0	0	713	logfile
✔	5MQ0	3541	2023-04-28	2016-12-19	4.17	4.40	—	4.2	0.010	1.54	21.0	0.11	14.99	0.01	0.679	7.92	2.73	7.7	91.4	0.9	-2.01	0.68	0.56	—	4.0	0.003	0.69	0.0	0.04	14.55	0.00	1.925	17.57	0.00	5.7	94.2	0.1	0.09	2.11	0.74	0.73	—	77441	9673	52	448	99	0	0	logfile
✔	4V91	2599	2023-04-25	2014-03-21	3.7	3.84	—	3.8	0.133	4.77	525.0	0.43	20.66	0.07	0.695	17.94	12.79	14.1	78.2	7.8	-5.39	0.33	0.36	0.15	3.8	0.032	1.24	0.0	0.04	17.28	0.01	2.047	15.07	1.04	8.1	91.2	0.7	-2.72	2.02	0.63	0.81	1.43	125665	6450	45	3482	0	0	0	logfile
✔	5iT9	8124	2023-04-29	2016-03-16	3.8	3.86	3.80	3.9	0.007	1.31	42.0	0.10	21.51	0.01	0.713	10.39	9.44	11.2	84.3	4.6	-3.05	0.60	0.76	0.99	3.8	0.005	0.84	0.0	0.04	19.92	0.01	1.810	19.12	1.00	11.9	86.6	1.5	-2.03	1.72	0.62	0.79	1.00	80144	4848	43	1972	83	0	0	logfile
✔	6QX7	4662	2023-04-27	2019-03-07	3.8	3.98	—	3.9	0.006	1.16	0.0	0.06	11.55	0.01	0.726	11.76	1.75	14.3	84.1	1.6	-4.94	0.63	0.59	1.19	3.9	0.004	0.94	0.0	0.05	17.09	0.01	2.061	21.16	0.77	15.3	84.3	0.4	-2.07	1.16	0.66	0.59	0.63	25164	3072	12	0	0	0	0	logfile
✔	6T7A	10391	2023-04-21	2019-10-21	3.7	4.20	3.60	3.7	0.006	0.87	0.0	0.05	25.96	0.01	0.733	6.61	0.00	1.8	98.1	0.1	-3.03	0.85	0.81	1.66	3.7	0.005	0.76	0.0	0.04	26.57	0.00	2.152	16.37	1.40	2.5	97.5	0.0	2.32	1.74	0.87	0.85	1.25	10338	847	11	190	0	0	0	logfile
✔	6Y50	10688	2023-04-23	2020-02-24	4.1	4.22	—	4.0	0.003	0.52	0.0	0.04	6.93	0.00	0.761	13.95	0.00	5.9	93.9	0.2	-3.48	0.68	0.68	—	4.0	0.005	0.73	0.0	0.05	9.80	0.01	1.964	10.01	0.27	14.1	85.8	0.1	-1.88	0.56	0.71	0.74	—	14916	2537	10	50	3	0	0	logfile
✘	7DX4	30895	2023-04-21	2021-01-18	3.6	3.96	—	3.8	0.007	1.00	0.0	0.06	9.71	0.01	0.766	7.28	0.23	6.0	93.7	0.3	-4.20	0.71	0.79	3.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8234	1027	6	0	5	0	0	logfile
✔	7ASK	11895	2023-04-22	2020-10-27	4.3	4.39	—	4.3	0.028	2.99	47.0	0.22	18.83	0.02	0.766	14.21	2.58	16.8	73.5	9.7	-6.06	0.17	0.51	—	4.3	0.015	1.14	2.0	0.05	15.52	0.01	1.979	19.61	0.00	18.6	79.9	1.4	-3.48	1.34	0.19	0.61	—	12285	1523	1	0	2	0	0	logfile
✔	6XRE	22294	2023-04-25	2020-07-12	4.6	7.52	—	4.5	0.011	1.16	1.0	0.07	10.73	0.01	0.771	5.15	0.24	7.9	91.5	0.6	-3.72	0.62	0.29	—	4.5	0.004	0.75	0.0	0.04	11.99	0.01	1.838	19.46	0.00	14.8	85.2	0.0	-2.98	0.93	0.85	0.65	—	68542	4289	18	0	9	0	34248	logfile
✔	6RD4	4805	2023-04-19	2019-04-12	2.9	2.95	—	2.9	0.014	1.11	0.0	0.07	14.22	0.01	0.776	6.62	0.69	4.7	95.0	0.2	-5.13	0.74	0.83	3.17	3.0	0.003	0.67	0.0	0.04	16.39	0.00	1.899	10.11	1.76	3.6	96.3	0.1	0.72	0.63	0.77	0.87	2.78	107552	14206	82	0	22	56	0	logfile

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