The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6SMH | 10235 | 2022-12-20 | 2019-08-21 | 4.3 | 4.36 | — | 4.3 | 0.009 | 1.33 | 2.0 | 0.07 | 17.19 | 0.04 | 0.292 | 54.51 | 14.61 | 12.0 | 85.8 | 2.2 | -4.97 | 0.68 | 0.79 | — | 4.3 | 0.007 | 0.93 | 0.0 | 0.05 | 14.32 | 0.01 | 1.992 | 24.35 | 0.15 | 12.6 | 87.0 | 0.4 | -2.46 | 2.72 | 0.69 | 0.81 | — | 39744 | 5025 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N1R | 9318 | 2022-12-21 | 2018-11-10 | 4.0 | 4.12 | — | 4.0 | 0.006 | 0.89 | 0.0 | 0.05 | 8.46 | 0.01 | 0.296 | 17.83 | 0.00 | 8.7 | 91.3 | 0.0 | -2.90 | 0.80 | 0.71 | — | 4.0 | 0.004 | 0.76 | 0.0 | 0.05 | 12.80 | 0.00 | 2.118 | 17.37 | 0.48 | 7.1 | 92.9 | 0.0 | 0.31 | 1.68 | 0.83 | 0.78 | — | 46044 | 5796 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 3JC5 | 6535 | 2022-12-20 | 2015-11-24 | 4.7 | 5.02 | — | 4.8 | 0.009 | 1.54 | 5.0 | 0.06 | 12.17 | 0.01 | 0.300 | 46.35 | 0.63 | 9.4 | 88.9 | 1.7 | -4.21 | 0.76 | 0.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40041 | 5039 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 8E01 | 27812 | 2022-12-16 | 2022-08-08 | 3.4 | 3.80 | 3.71 | 3.8 | 0.002 | 0.56 | 0.0 | 0.04 | 17.85 | 0.00 | 0.307 | 13.45 | 0.41 | 2.0 | 98.0 | 0.0 | -0.28 | 0.62 | 0.59 | 0.19 | 3.8 | 0.006 | 0.94 | 14.0 | 0.06 | 17.98 | 0.01 | 1.639 | 22.45 | 0.64 | 5.4 | 94.5 | 0.1 | -0.49 | 1.37 | 0.72 | 0.77 | 1.33 | 92598 | 12261 | 61 | 0 | 0 | 0 | 0 | logfile |
✔ | 6S61 | 10101 | 2022-12-14 | 2019-07-02 | 1.84 | 1.89 | 1.85 | 1.9 | 0.011 | 1.36 | 0.0 | 0.06 | 12.21 | 0.01 | 0.312 | 2.62 | 1.29 | 1.8 | 98.2 | 0.0 | 3.69 | 0.77 | 0.86 | 8.46 | 1.9 | 0.003 | 0.57 | 0.0 | 0.03 | 14.82 | 0.00 | 1.798 | 5.19 | 0.65 | 1.8 | 98.2 | 0.0 | 4.54 | 0.74 | 0.80 | 0.90 | 8.65 | 71060 | 4128 | 72 | 0 | 30 | 3854 | 32904 | logfile |
✔ | 6TA3 | 10421 | 2022-12-12 | 2019-10-29 | 3.8 | 4.18 | — | 3.9 | 0.024 | 2.45 | 4.0 | 0.08 | 18.76 | 0.01 | 0.317 | 210.77 | 16.02 | 0.8 | 99.2 | 0.0 | 1.86 | 0.67 | 0.49 | 0.26 | 4.0 | 0.004 | 0.86 | 0.0 | 0.04 | 17.60 | 0.01 | 1.333 | 27.41 | 0.78 | 3.1 | 96.9 | 0.0 | -0.05 | 2.41 | 0.77 | 0.73 | 0.40 | 9491 | 1201 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 6T61 | 10381 | 2022-12-16 | 2019-10-17 | 3.7 | 3.68 | — | 3.6 | 0.006 | 0.93 | 0.0 | 0.05 | 15.61 | 0.01 | 0.321 | 8.35 | 0.00 | 8.1 | 91.9 | 0.0 | -3.35 | 0.50 | 0.77 | 1.47 | 3.6 | 0.003 | 0.76 | 0.0 | 0.04 | 17.80 | 0.00 | 2.091 | 12.21 | 0.48 | 6.0 | 94.0 | 0.0 | 0.82 | 1.64 | 0.51 | 0.78 | 0.72 | 30978 | 3906 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GJ1 | 0009 | 2022-12-13 | 2018-05-15 | 4.7 | 4.83 | — | 4.4 | 0.010 | 1.51 | 5.0 | 0.07 | 11.65 | 0.01 | 0.341 | 23.90 | 0.72 | 18.3 | 81.3 | 0.4 | -5.15 | 0.83 | 0.71 | — | 4.4 | 0.003 | 0.89 | 0.0 | 0.05 | 12.54 | 0.01 | 2.091 | 23.54 | 0.07 | 17.5 | 82.4 | 0.1 | -3.80 | 1.19 | 0.85 | 0.76 | — | 13013 | 1638 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FKH | 4271 | 2022-12-20 | 2018-01-24 | 4.2 | 4.29 | 4.16 | 4.2 | 0.015 | 1.45 | 28.0 | 0.09 | 11.91 | 0.01 | 0.343 | 62.35 | 0.15 | 3.9 | 96.0 | 0.1 | -0.16 | 0.63 | 0.67 | — | 4.2 | 0.004 | 0.79 | 0.0 | 0.05 | 13.67 | 0.01 | 1.865 | 19.09 | 0.07 | 4.2 | 95.8 | 0.1 | -0.09 | 1.92 | 0.69 | 0.80 | — | 39231 | 5201 | 31 | 0 | 10 | 0 | 0 | logfile |
✔ | 5N61 | 3593 | 2022-12-22 | 2017-02-14 | 3.4 | 3.59 | — | 3.5 | 0.012 | 1.19 | 0.0 | 0.05 | 14.76 | 0.01 | 0.343 | 36.53 | 7.23 | 9.1 | 88.8 | 2.1 | -4.08 | 0.72 | 0.65 | 2.60 | 3.5 | 0.003 | 0.75 | 0.0 | 0.05 | 16.28 | 0.01 | 1.983 | 15.32 | 0.34 | 5.6 | 94.1 | 0.2 | -0.45 | 2.75 | 0.81 | 0.84 | 1.97 | 48547 | 5887 | 27 | 79 | 9 | 0 | 0 | logfile |
✔ | 6SAG | 10130 | 2022-12-11 | 2019-07-16 | 2.0 | 2.11 | 2.01 | 2.1 | 0.004 | 0.65 | 0.0 | 0.04 | 12.99 | 0.00 | 0.351 | 2.79 | 0.00 | 2.6 | 97.4 | 0.0 | -0.33 | 0.58 | 0.86 | 6.64 | 2.1 | 0.004 | 0.65 | 0.0 | 0.04 | 15.31 | 0.01 | 2.030 | 3.13 | 1.19 | 3.0 | 97.0 | 0.0 | 1.39 | 0.73 | 0.59 | 0.89 | 6.90 | 54080 | 6120 | 240 | 120 | 240 | 2840 | 0 | logfile |
✔ | 6RDB | 4812 | 2022-12-18 | 2019-04-12 | 2.8 | 2.89 | 2.82 | 2.9 | 0.008 | 1.00 | 0.0 | 0.06 | 14.82 | 0.01 | 0.351 | 8.72 | 1.23 | 4.1 | 95.8 | 0.1 | -4.44 | 0.70 | 0.84 | 3.24 | 2.9 | 0.009 | 0.67 | 0.0 | 0.04 | 16.51 | 0.01 | 1.868 | 11.11 | 2.44 | 3.8 | 96.2 | 0.0 | -0.15 | 0.54 | 0.70 | 0.86 | 2.92 | 33961 | 4506 | 31 | 0 | 10 | 40 | 0 | logfile |
✔ | 6EML | 3886 | 2022-12-15 | 2017-10-02 | 3.6 | 3.65 | — | 3.6 | 0.014 | 1.54 | 11.0 | 0.10 | 18.16 | 0.01 | 0.382 | 12.87 | 1.27 | 12.5 | 86.2 | 1.3 | -4.67 | 0.66 | 0.77 | 2.11 | 3.6 | 0.004 | 0.75 | 0.0 | 0.04 | 18.33 | 0.00 | 2.075 | 16.57 | 0.72 | 12.1 | 87.7 | 0.3 | -2.00 | 0.78 | 0.67 | 0.78 | 1.43 | 75886 | 5233 | 32 | 1675 | 0 | 0 | 0 | logfile |
✔ | 6SD3 | 10147 | 2022-12-12 | 2019-07-26 | 3.3 | 3.67 | — | 3.2 | 0.008 | 0.84 | 19.0 | 0.04 | 13.90 | 0.01 | 0.390 | 14.35 | 1.24 | 10.8 | 88.5 | 0.7 | -5.37 | 0.79 | 0.84 | 2.93 | 3.2 | 0.003 | 0.65 | 0.0 | 0.04 | 15.22 | 0.00 | 2.128 | 11.22 | 0.14 | 3.8 | 96.2 | 0.0 | -0.41 | 0.69 | 0.79 | 0.85 | 2.38 | 63144 | 8212 | 34 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KZo | 23084 | 2022-12-11 | 2020-12-10 | 3.3 | 2.88 | — | 3.3 | 0.005 | 0.86 | 1.0 | 0.05 | 15.08 | 0.01 | 0.399 | 14.08 | 0.29 | 4.0 | 96.0 | 0.0 | -1.81 | 0.77 | 0.76 | 2.07 | 3.3 | 0.003 | 0.69 | 0.0 | 0.04 | 17.01 | 0.00 | 1.894 | 11.73 | 0.29 | 3.4 | 96.6 | 0.0 | 0.21 | 1.51 | 0.78 | 0.79 | 1.60 | 54110 | 6873 | 34 | 8 | 14 | 0 | 0 | logfile |
✔ | 6SPD | 10282 | 2022-12-16 | 2019-09-01 | 3.28 | 3.35 | — | 3.3 | 0.010 | 1.16 | 0.0 | 0.06 | 18.38 | 0.01 | 0.400 | 15.54 | 1.26 | 12.2 | 87.1 | 0.7 | -5.12 | 0.66 | 0.50 | 0.28 | 3.3 | 0.008 | 0.86 | 0.0 | 0.05 | 17.63 | 0.01 | 1.960 | 9.82 | 0.87 | 12.2 | 87.7 | 0.1 | -3.18 | 2.06 | 0.87 | 0.87 | 1.94 | 90352 | 3458 | 32 | 2967 | 0 | 0 | 0 | logfile |
✔ | 6i26 | 0328 | 2022-12-14 | 2018-10-31 | 4.3 | 4.37 | — | 4.2 | 0.005 | 0.89 | 0.0 | 0.05 | 8.22 | 0.01 | 0.411 | 6.12 | 0.50 | 6.4 | 93.3 | 0.3 | -6.25 | 0.75 | 0.60 | — | 4.2 | 0.002 | 0.67 | 0.0 | 0.04 | 10.66 | 0.00 | 2.210 | 5.49 | 0.07 | 5.9 | 94.1 | 0.0 | 0.04 | 0.98 | 0.84 | 0.77 | — | 22765 | 3366 | 1 | 0 | 221 | 0 | 0 | logfile |
✘ | 6YMY | 10848 | 2022-12-18 | 2020-04-10 | 3.41 | 3.81 | 3.50 | 3.7 | 0.008 | 1.25 | 0.0 | 0.06 | 16.55 | 0.01 | 0.424 | 7.47 | 0.27 | 8.9 | 91.0 | 0.1 | -6.00 | 0.68 | 0.82 | 2.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14612 | 1766 | 19 | 0 | 16 | 0 | 0 | logfile |
✔ | 6H05 | 0108 | 2022-12-21 | 2018-07-06 | 2.9 | 3.15 | — | 3.5 | 0.016 | 1.09 | 0.0 | 0.07 | 9.74 | 0.01 | 0.426 | 17.81 | 0.00 | 8.5 | 91.5 | 0.0 | -5.50 | 0.36 | 0.13 | 0.50 | 3.1 | 0.003 | 0.86 | 0.0 | 0.04 | 15.56 | 0.00 | 2.134 | 15.94 | 2.28 | 4.3 | 95.7 | 0.0 | -1.34 | 1.63 | 0.58 | 0.47 | 0.65 | 44544 | 5664 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SVU | 25453 | 2022-12-15 | 2021-11-19 | 3.5 | 2.79 | 3.45 | 3.4 | 0.020 | 1.92 | 12.0 | 0.11 | 13.88 | 0.01 | 0.437 | 14.82 | 0.42 | 2.3 | 97.6 | 0.2 | -0.41 | 0.73 | 0.74 | 1.30 | 3.3 | 0.003 | 0.73 | 0.0 | 0.04 | 18.40 | 0.00 | 1.934 | 10.42 | 0.56 | 3.3 | 96.7 | 0.0 | 1.11 | 1.68 | 0.73 | 0.80 | 1.33 | 28015 | 3283 | 35 | 56 | 22 | 0 | 0 | logfile |