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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5LKi | 4068 | 2023-04-20 | 2016-07-22 | 3.46 | 3.72 | — | 3.5 | 0.013 | 1.24 | 5.0 | 0.06 | 10.71 | 0.01 | 0.579 | 39.51 | 0.18 | 7.7 | 91.7 | 0.6 | -4.39 | 0.65 | 0.79 | 2.37 | 3.5 | 0.004 | 0.83 | 0.0 | 0.04 | 15.10 | 0.00 | 2.088 | 15.46 | 0.70 | 7.1 | 92.5 | 0.4 | 0.24 | 0.81 | 0.63 | 0.80 | 1.65 | 55415 | 7135 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UZ0 | 20949 | 2023-04-21 | 2019-11-14 | 3.24 | 3.60 | — | 3.6 | 0.022 | 1.38 | 5.0 | 0.18 | 17.79 | 0.01 | 0.584 | 27.88 | 2.73 | 7.5 | 91.5 | 1.0 | -2.63 | 0.48 | 0.76 | 1.87 | 3.6 | 0.004 | 0.77 | 0.0 | 0.04 | 17.62 | 0.00 | 2.151 | 12.64 | 0.42 | 6.8 | 92.8 | 0.4 | -0.08 | 0.66 | 0.46 | 0.77 | 1.04 | 9557 | 1138 | 5 | 0 | 26 | 0 | 0 | logfile |
✔ | 7PBX | 13308 | 2023-04-21 | 2021-08-02 | 3.43 | 3.70 | 3.43 | 3.1 | 0.032 | 2.53 | 206.0 | 0.21 | 19.43 | 0.02 | 0.597 | 32.75 | 11.71 | 3.1 | 95.3 | 1.6 | 1.29 | 0.69 | 0.65 | 1.83 | 3.2 | 0.004 | 0.77 | 0.0 | 0.05 | 17.15 | 0.00 | 1.823 | 14.67 | 0.32 | 4.7 | 95.3 | 0.1 | 1.26 | 1.42 | 0.90 | 0.87 | 2.10 | 59472 | 8015 | 35 | 0 | 28 | 0 | 0 | logfile |
✔ | 7WCo | 32426 | 2023-04-21 | 2021-12-20 | 3.8 | 3.89 | — | 3.9 | 0.008 | 1.13 | 0.0 | 0.06 | 11.02 | 0.01 | 0.599 | 4.59 | 0.53 | 14.2 | 85.8 | 0.0 | -5.43 | 0.56 | 0.85 | 2.78 | 3.9 | 0.004 | 0.79 | 0.0 | 0.05 | 15.45 | 0.01 | 2.183 | 9.17 | 0.63 | 8.8 | 91.2 | 0.0 | -2.39 | 1.57 | 0.56 | 0.85 | 2.86 | 8950 | 1195 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G05 | 3388 | 2023-04-22 | 2016-03-16 | 3.4 | 3.84 | — | 3.5 | 0.016 | 1.81 | 55.0 | 0.10 | 18.98 | 0.01 | 0.612 | 56.69 | 17.76 | 4.5 | 93.6 | 1.8 | -0.14 | 0.85 | 0.76 | 1.42 | 3.5 | 0.003 | 0.84 | 0.0 | 0.04 | 17.34 | 0.00 | 2.093 | 16.82 | 0.41 | 4.9 | 94.6 | 0.5 | 0.75 | 3.20 | 0.89 | 0.84 | 1.25 | 63181 | 8027 | 21 | 0 | 3 | 0 | 0 | logfile |
✔ | 6YAM | 10761 | 2023-04-23 | 2020-03-12 | 3.6 | 3.47 | — | 3.5 | 0.021 | 2.06 | 55.0 | 0.12 | 15.03 | 0.02 | 0.634 | 17.64 | 3.01 | 10.8 | 85.2 | 4.0 | -4.49 | 0.39 | 0.52 | 0.80 | 3.4 | 0.003 | 0.74 | 0.0 | 0.04 | 16.51 | 0.00 | 2.048 | 11.35 | 0.48 | 9.5 | 90.2 | 0.3 | -1.76 | 1.54 | 0.45 | 0.63 | 1.12 | 118536 | 9811 | 51 | 1863 | 5 | 0 | 0 | logfile |
✔ | 8EJL | 28186 | 2023-04-26 | 2022-09-17 | 3.9 | 4.30 | 3.90 | 4.1 | 0.005 | 0.54 | 0.0 | 0.04 | 11.63 | 0.00 | 0.636 | 9.14 | 3.04 | 2.2 | 97.8 | 0.0 | 1.75 | 0.68 | 0.85 | 1.79 | 4.1 | 0.004 | 0.67 | 0.0 | 0.04 | 14.77 | 0.00 | 2.108 | 10.38 | 0.37 | 2.3 | 97.7 | 0.0 | 2.24 | 0.60 | 0.68 | 0.85 | 1.21 | 22155 | 3095 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PBJ | 13293 | 2023-04-21 | 2021-08-02 | 3.4 | 3.54 | 3.40 | 3.2 | 0.018 | 2.20 | 140.0 | 0.13 | 19.50 | 0.01 | 0.650 | 29.74 | 11.71 | 2.5 | 96.9 | 0.6 | 1.69 | 0.71 | 0.67 | 2.07 | 3.2 | 0.004 | 0.70 | 0.0 | 0.04 | 17.42 | 0.00 | 1.896 | 14.50 | 0.24 | 3.7 | 96.3 | 0.1 | 0.78 | 2.34 | 0.89 | 0.86 | 2.01 | 59486 | 8015 | 42 | 0 | 28 | 14 | 0 | logfile |
✔ | 7PGV | 13400 | 2023-04-22 | 2021-08-16 | 3.4 | 3.84 | 3.63 | 3.7 | 0.007 | 0.78 | 0.0 | 0.04 | 27.38 | 0.01 | 0.678 | 14.15 | 0.42 | 3.7 | 96.3 | 0.0 | 0.44 | 0.73 | 0.65 | 2.04 | 3.7 | 0.005 | 0.56 | 0.0 | 0.03 | 28.48 | 0.00 | 1.920 | 36.24 | 1.12 | 4.5 | 95.5 | 0.0 | 1.70 | 0.60 | 0.81 | 0.87 | 1.31 | 13484 | 856 | 11 | 290 | 0 | 0 | 713 | logfile |
✔ | 7PH5 | 13407 | 2023-04-22 | 2021-08-16 | 4.0 | 4.33 | 4.10 | 4.2 | 0.007 | 0.78 | 0.0 | 0.04 | 27.45 | 0.01 | 0.679 | 13.94 | 0.42 | 3.7 | 96.3 | 0.0 | 0.43 | 0.72 | 0.65 | — | 4.2 | 0.006 | 0.63 | 0.0 | 0.03 | 27.57 | 0.00 | 1.857 | 44.35 | 0.98 | 5.4 | 94.6 | 0.0 | 1.19 | 2.40 | 0.82 | 0.86 | — | 13483 | 856 | 11 | 290 | 0 | 0 | 713 | logfile |
✔ | 5MQ0 | 3541 | 2023-04-28 | 2016-12-19 | 4.17 | 4.40 | — | 4.2 | 0.010 | 1.54 | 21.0 | 0.11 | 14.99 | 0.01 | 0.679 | 7.92 | 2.73 | 7.7 | 91.4 | 0.9 | -2.01 | 0.68 | 0.56 | — | 4.0 | 0.003 | 0.69 | 0.0 | 0.04 | 14.55 | 0.00 | 1.925 | 17.57 | 0.00 | 5.7 | 94.2 | 0.1 | 0.09 | 2.11 | 0.74 | 0.73 | — | 77441 | 9673 | 52 | 448 | 99 | 0 | 0 | logfile |
✔ | 4V91 | 2599 | 2023-04-25 | 2014-03-21 | 3.7 | 3.84 | — | 3.8 | 0.133 | 4.77 | 525.0 | 0.43 | 20.66 | 0.07 | 0.695 | 17.94 | 12.79 | 14.1 | 78.2 | 7.8 | -5.39 | 0.33 | 0.36 | 0.15 | 3.8 | 0.032 | 1.24 | 0.0 | 0.04 | 17.28 | 0.01 | 2.047 | 15.07 | 1.04 | 8.1 | 91.2 | 0.7 | -2.72 | 2.02 | 0.63 | 0.81 | 1.43 | 125665 | 6450 | 45 | 3482 | 0 | 0 | 0 | logfile |
✔ | 5iT9 | 8124 | 2023-04-29 | 2016-03-16 | 3.8 | 3.86 | 3.80 | 3.9 | 0.007 | 1.31 | 42.0 | 0.10 | 21.51 | 0.01 | 0.713 | 10.39 | 9.44 | 11.2 | 84.3 | 4.6 | -3.05 | 0.60 | 0.76 | 0.99 | 3.8 | 0.005 | 0.84 | 0.0 | 0.04 | 19.92 | 0.01 | 1.810 | 19.12 | 1.00 | 11.9 | 86.6 | 1.5 | -2.03 | 1.72 | 0.62 | 0.79 | 1.00 | 80144 | 4848 | 43 | 1972 | 83 | 0 | 0 | logfile |
✔ | 6QX7 | 4662 | 2023-04-27 | 2019-03-07 | 3.8 | 3.98 | — | 3.9 | 0.006 | 1.16 | 0.0 | 0.06 | 11.55 | 0.01 | 0.726 | 11.76 | 1.75 | 14.3 | 84.1 | 1.6 | -4.94 | 0.63 | 0.59 | 1.19 | 3.9 | 0.004 | 0.94 | 0.0 | 0.05 | 17.09 | 0.01 | 2.061 | 21.16 | 0.77 | 15.3 | 84.3 | 0.4 | -2.07 | 1.16 | 0.66 | 0.59 | 0.63 | 25164 | 3072 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6T7A | 10391 | 2023-04-21 | 2019-10-21 | 3.7 | 4.20 | 3.60 | 3.7 | 0.006 | 0.87 | 0.0 | 0.05 | 25.96 | 0.01 | 0.733 | 6.61 | 0.00 | 1.8 | 98.1 | 0.1 | -3.03 | 0.85 | 0.81 | 1.66 | 3.7 | 0.005 | 0.76 | 0.0 | 0.04 | 26.57 | 0.00 | 2.152 | 16.37 | 1.40 | 2.5 | 97.5 | 0.0 | 2.32 | 1.74 | 0.87 | 0.85 | 1.25 | 10338 | 847 | 11 | 190 | 0 | 0 | 0 | logfile |
✔ | 6Y50 | 10688 | 2023-04-23 | 2020-02-24 | 4.1 | 4.22 | — | 4.0 | 0.003 | 0.52 | 0.0 | 0.04 | 6.93 | 0.00 | 0.761 | 13.95 | 0.00 | 5.9 | 93.9 | 0.2 | -3.48 | 0.68 | 0.68 | — | 4.0 | 0.005 | 0.73 | 0.0 | 0.05 | 9.80 | 0.01 | 1.964 | 10.01 | 0.27 | 14.1 | 85.8 | 0.1 | -1.88 | 0.56 | 0.71 | 0.74 | — | 14916 | 2537 | 10 | 50 | 3 | 0 | 0 | logfile |
✘ | 7DX4 | 30895 | 2023-04-21 | 2021-01-18 | 3.6 | 3.96 | — | 3.8 | 0.007 | 1.00 | 0.0 | 0.06 | 9.71 | 0.01 | 0.766 | 7.28 | 0.23 | 6.0 | 93.7 | 0.3 | -4.20 | 0.71 | 0.79 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8234 | 1027 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 7ASK | 11895 | 2023-04-22 | 2020-10-27 | 4.3 | 4.39 | — | 4.3 | 0.028 | 2.99 | 47.0 | 0.22 | 18.83 | 0.02 | 0.766 | 14.21 | 2.58 | 16.8 | 73.5 | 9.7 | -6.06 | 0.17 | 0.51 | — | 4.3 | 0.015 | 1.14 | 2.0 | 0.05 | 15.52 | 0.01 | 1.979 | 19.61 | 0.00 | 18.6 | 79.9 | 1.4 | -3.48 | 1.34 | 0.19 | 0.61 | — | 12285 | 1523 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6XRE | 22294 | 2023-04-25 | 2020-07-12 | 4.6 | 7.52 | — | 4.5 | 0.011 | 1.16 | 1.0 | 0.07 | 10.73 | 0.01 | 0.771 | 5.15 | 0.24 | 7.9 | 91.5 | 0.6 | -3.72 | 0.62 | 0.29 | — | 4.5 | 0.004 | 0.75 | 0.0 | 0.04 | 11.99 | 0.01 | 1.838 | 19.46 | 0.00 | 14.8 | 85.2 | 0.0 | -2.98 | 0.93 | 0.85 | 0.65 | — | 68542 | 4289 | 18 | 0 | 9 | 0 | 34248 | logfile |
✔ | 6RD4 | 4805 | 2023-04-19 | 2019-04-12 | 2.9 | 2.95 | — | 2.9 | 0.014 | 1.11 | 0.0 | 0.07 | 14.22 | 0.01 | 0.776 | 6.62 | 0.69 | 4.7 | 95.0 | 0.2 | -5.13 | 0.74 | 0.83 | 3.17 | 3.0 | 0.003 | 0.67 | 0.0 | 0.04 | 16.39 | 0.00 | 1.899 | 10.11 | 1.76 | 3.6 | 96.3 | 0.1 | 0.72 | 0.63 | 0.77 | 0.87 | 2.78 | 107552 | 14206 | 82 | 0 | 22 | 56 | 0 | logfile |