Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5ND1	3619	2022-04-05	2017-03-07	3.7	3.86	—	3.9	0.017	2.27	54.0	0.15	22.44	0.01	0.204	100.06	32.66	7.8	89.7	2.5	-2.95	0.47	0.82	1.08	3.9	0.006	0.90	0.0	0.04	18.16	0.01	2.087	15.49	0.57	9.8	89.7	0.5	-2.03	1.59	0.48	0.83	1.04	14963	1977	2	0	0	0	0	logfile
✔	7K3V	22657	2022-04-08	2020-09-14	1.34	1.44	—	1.4	0.005	0.79	0.0	0.04	14.68	0.00	0.211	2.71	0.00	1.2	98.8	0.0	3.60	0.69	0.78	8.90	1.4	0.005	0.76	0.0	0.04	14.89	0.01	1.975	1.80	0.00	1.2	98.8	0.0	3.84	0.31	0.73	0.83	8.91	38406	4128	72	0	334	2672	0	logfile
✔	3J9S	6272	2022-04-05	2015-02-19	2.6	3.83	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.216	24.94	6.86	1.3	98.0	0.8	1.97	0.68	0.76	3.15	3.5	0.003	0.64	0.0	0.04	17.34	0.00	1.152	8.77	1.52	1.9	98.1	0.0	1.29	1.91	0.70	0.89	3.42	9813	1191	3	0	15	315	0	logfile
✔	3JBU	6483	2022-04-09	2015-10-16	3.64	3.71	—	3.6	0.008	1.32	5.0	0.10	19.19	0.01	0.232	33.71	2.84	8.0	89.1	2.9	-2.66	0.70	0.74	0.87	3.6	0.009	0.91	3.0	0.04	17.86	0.01	1.755	15.90	0.33	9.1	90.5	0.5	-2.28	2.04	0.72	0.78	0.95	143334	5599	54	4638	0	0	0	logfile
✘	5UCY	8539	2022-04-07	2016-12-22	4.6	4.99	—	4.6	0.011	1.21	3.0	0.06	13.21	0.01	0.244	89.25	0.68	11.3	88.3	0.5	-4.47	0.50	0.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24990	2610	12	3	6	0	4452	logfile
✔	6V4J	21041	2022-04-07	2019-11-27	2.97	2.66	—	2.6	0.010	1.79	8.0	0.09	13.20	0.01	0.244	16.38	5.36	4.0	95.7	0.3	-0.54	0.47	0.48	1.90	2.6	0.009	1.09	0.0	0.04	16.45	0.01	1.671	20.08	3.58	4.2	95.8	0.0	-1.78	1.51	0.50	0.52	1.52	20637	2697	8	0	0	0	0	logfile
✔	5FYW	3378	2022-04-09	2016-03-10	4.35	4.82	—	4.3	0.010	1.14	2.0	0.07	12.79	0.01	0.245	16.99	0.77	5.4	94.1	0.5	-2.84	0.80	0.75	—	4.3	0.006	0.82	0.0	0.04	14.56	0.01	1.901	23.51	0.00	6.7	93.1	0.2	-0.30	2.89	0.83	0.82	—	41710	5176	30	94	11	0	0	logfile
✔	6oLG	0601	2022-04-20	2019-04-16	3.4	3.49	3.45	3.4	0.006	1.05	2.0	0.05	15.40	0.01	0.250	8.16	1.48	9.3	89.8	0.9	-3.80	0.68	0.76	1.55	3.4	0.006	0.74	2.0	0.04	16.72	0.01	1.287	14.38	0.22	9.2	90.6	0.2	-1.43	2.01	0.71	0.81	1.39	216796	11777	101	5688	332	0	0	logfile
✔	6ZXD	11517	2022-04-07	2020-07-29	3.2	3.08	3.17	3.1	0.007	0.94	0.0	0.05	16.74	0.01	0.254	5.74	0.21	7.2	92.6	0.2	-3.93	0.76	0.76	2.67	3.1	0.004	0.65	0.0	0.04	17.03	0.00	2.053	8.71	0.34	4.9	95.0	0.1	-0.89	1.17	0.76	0.76	2.11	80922	5944	39	1645	2	0	0	logfile
✔	6G51	4350	2022-04-09	2018-03-28	4.1	4.42	—	4.0	0.007	1.44	22.0	0.10	21.21	0.00	0.264	3.79	0.00	7.0	92.3	0.8	-2.90	0.71	0.63	—	3.9	0.004	0.75	0.0	0.04	21.98	0.00	1.945	9.45	0.00	12.1	87.8	0.1	-1.57	1.59	0.81	0.69	—	50662	6237	38	1659	0	0	0	logfile
✔	6CB1	7445	2022-04-06	2018-02-01	4.6	4.77	—	4.6	0.006	1.02	0.0	0.06	16.94	0.00	0.266	5.97	0.00	5.0	94.8	0.1	-2.68	0.66	0.49	—	4.5	0.004	0.81	0.0	0.04	18.29	0.00	1.994	22.52	0.00	10.5	89.5	0.0	-1.78	2.32	0.75	0.76	—	69945	6459	42	1615	694	0	0	logfile
✔	5NGM	3640	2022-04-09	2017-03-18	2.9	3.05	—	3.0	0.006	0.86	0.0	0.05	17.23	0.01	0.270	7.58	0.81	8.3	91.7	0.0	-4.79	0.70	0.72	2.80	3.0	0.005	0.77	0.0	0.04	18.08	0.01	1.789	13.74	4.13	8.9	91.1	0.0	-2.42	0.65	0.76	0.82	2.41	140965	5610	57	4559	205	0	0	logfile
✘	3J5Q	5776	2022-04-06	2013-10-28	3.8	4.64	—	7.1	0.010	1.45	0.0	0.09	20.92	0.01	0.275	104.72	29.72	6.4	93.1	0.5	-0.53	0.58	0.44	-0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18264	2324	8	0	168	0	0	logfile
✔	3J7N	6000	2022-04-21	2014-07-18	3.8	3.16	—	3.9	0.014	1.65	120.0	0.11	11.81	0.01	0.277	35.58	1.88	11.4	85.9	2.8	-1.51	0.73	0.78	2.08	3.4	0.036	0.95	1.0	0.05	17.74	0.01	1.559	22.24	0.73	6.0	92.8	1.2	-1.55	1.79	0.71	0.78	1.37	217080	28680	180	0	0	0	0	logfile
✔	6FTi	4316	2022-04-15	2018-02-22	4.2	4.31	—	4.2	0.011	1.38	18.0	0.10	19.92	0.01	0.284	12.01	11.77	9.7	87.9	2.4	-4.07	0.61	0.61	—	4.2	0.006	0.90	1.0	0.04	17.87	0.01	1.092	27.29	0.04	8.8	90.7	0.6	-1.71	0.94	0.63	0.66	—	153850	8349	75	4014	399	0	0	logfile
✔	6ZTP	11423	2022-04-12	2020-07-20	3.0	2.63	3.07	2.9	0.013	1.11	0.0	0.06	16.31	0.02	0.284	6.58	5.10	5.8	93.5	0.7	-2.13	0.81	0.86	2.80	3.0	0.004	0.71	1.0	0.03	15.81	0.01	1.050	10.86	2.46	3.9	96.0	0.0	-0.05	2.16	0.82	0.88	2.33	172846	8886	79	4793	491	0	0	logfile
✔	6SMH	10235	2022-04-09	2019-08-21	4.3	4.36	—	4.3	0.009	1.33	2.0	0.07	17.19	0.04	0.292	54.20	14.61	12.0	85.8	2.2	-4.97	0.68	0.79	—	4.3	0.006	0.96	0.0	0.05	14.32	0.01	2.076	23.08	0.10	11.9	87.7	0.4	-2.35	2.98	0.69	0.80	—	39744	5025	16	0	0	0	0	logfile
✔	6U5T	20655	2022-04-11	2019-08-28	2.9	3.84	—	3.3	0.012	0.83	0.0	0.05	14.37	0.01	0.294	37.60	0.07	14.7	85.2	0.1	-5.87	0.87	0.81	2.18	3.3	0.004	0.85	1.0	0.05	16.44	0.00	2.055	18.48	2.85	5.4	94.5	0.0	-0.91	1.70	0.88	0.83	2.01	169398	21894	24	0	12	0	0	logfile
✔	6N1R	9318	2022-04-09	2018-11-10	4.0	4.12	—	4.0	0.006	0.89	0.0	0.05	8.46	0.01	0.296	17.83	0.00	8.7	91.3	0.0	-2.90	0.80	0.71	—	4.0	0.004	0.76	0.0	0.05	12.80	0.00	2.118	17.16	0.48	7.1	92.9	0.0	0.31	1.68	0.83	0.78	—	46044	5796	12	0	0	0	0	logfile
✔	6ZTJ	11418	2022-04-13	2020-07-20	3.4	3.44	3.74	3.4	0.012	1.14	0.0	0.07	16.58	0.02	0.298	8.36	6.84	6.6	92.7	0.7	-2.31	0.78	0.76	0.84	3.4	0.007	0.74	2.0	0.04	15.77	0.01	1.077	13.65	0.37	4.8	95.2	0.0	-0.31	1.62	0.79	0.78	0.67	176970	9394	80	4806	483	0	0	logfile

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