Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6CB1	7445	2022-07-04	2018-02-01	4.6	4.77	—	4.6	0.006	1.02	0.0	0.06	16.94	0.00	0.266	5.97	0.00	5.0	94.8	0.1	-2.68	0.66	0.49	—	4.5	0.004	0.81	0.0	0.04	18.29	0.00	1.994	22.52	0.00	10.5	89.5	0.0	-1.78	2.32	0.75	0.76	—	69945	6459	42	1615	694	0	0	logfile
✔	5NGM	3640	2022-07-07	2017-03-18	2.9	3.05	—	3.0	0.006	0.86	0.0	0.05	17.23	0.01	0.270	7.62	0.81	8.3	91.7	0.0	-4.79	0.70	0.72	2.80	3.0	0.006	0.68	0.0	0.04	17.58	0.00	1.845	11.49	4.22	7.4	92.6	0.0	-2.02	1.23	0.76	0.82	2.24	140965	5610	57	4559	205	0	0	logfile
✘	3J5Q	5776	2022-07-04	2013-10-28	3.8	4.64	—	7.1	0.010	1.45	0.0	0.09	20.92	0.01	0.275	105.06	29.72	6.4	93.1	0.5	-0.53	0.58	0.44	-0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18264	2324	8	0	168	0	0	logfile
✔	6FTi	4316	2022-07-11	2018-02-22	4.2	4.31	—	4.2	0.011	1.38	18.0	0.10	19.92	0.01	0.284	12.10	11.77	9.7	87.9	2.4	-4.07	0.61	0.61	—	4.2	0.005	0.87	1.0	0.04	17.97	0.01	1.092	28.41	0.06	9.0	90.4	0.6	-1.89	1.00	0.63	0.66	—	153850	8349	75	4014	399	0	0	logfile
✔	6SMH	10235	2022-07-07	2019-08-21	4.3	4.36	—	4.3	0.009	1.33	2.0	0.07	17.19	0.04	0.292	54.51	14.61	12.0	85.8	2.2	-4.97	0.68	0.79	—	4.3	0.006	0.96	0.0	0.05	14.32	0.01	2.076	23.35	0.10	11.9	87.7	0.4	-2.35	2.98	0.69	0.80	—	39744	5025	16	0	0	0	0	logfile
✔	6N1R	9318	2022-07-07	2018-11-10	4.0	4.12	—	4.0	0.006	0.89	0.0	0.05	8.46	0.01	0.296	17.83	0.00	8.7	91.3	0.0	-2.90	0.80	0.71	—	4.0	0.004	0.76	0.0	0.05	12.80	0.00	2.118	17.37	0.48	7.1	92.9	0.0	0.31	1.68	0.83	0.78	—	46044	5796	12	0	0	0	0	logfile
✔	3JC5	6535	2022-07-07	2015-11-24	4.7	5.02	—	4.8	0.009	1.54	5.0	0.06	12.17	0.01	0.300	46.35	0.63	9.4	88.9	1.7	-4.21	0.76	0.60	—	4.8	0.004	1.01	0.0	0.05	13.22	0.00	1.966	23.19	0.02	9.3	89.9	0.9	-1.49	1.56	0.83	0.78	—	40041	5039	11	0	0	0	0	logfile
✔	6S61	10101	2022-07-04	2019-07-02	1.84	1.89	1.85	1.9	0.011	1.36	0.0	0.06	12.21	0.01	0.312	2.62	1.29	1.8	98.2	0.0	3.69	0.77	0.86	8.46	1.9	0.003	0.57	0.0	0.03	14.82	0.00	1.798	5.19	0.65	1.8	98.2	0.0	4.54	0.74	0.79	0.89	8.65	71060	4128	72	0	30	3854	32904	logfile
✔	6TA3	10421	2022-07-03	2019-10-29	3.8	4.18	—	3.9	0.024	2.45	4.0	0.08	18.76	0.01	0.317	210.77	16.02	0.8	99.2	0.0	1.86	0.67	0.49	0.26	4.0	0.008	1.20	1.0	0.05	17.85	0.01	1.307	34.27	0.00	3.2	96.8	0.0	-0.17	2.41	0.77	0.73	0.34	9491	1201	6	0	5	0	0	logfile
✔	7o3X	12711	2022-07-08	2021-04-03	3.9	4.85	4.22	6.5	0.017	1.96	0.0	0.11	18.05	0.01	0.321	15.91	1.39	1.6	97.8	0.6	2.94	0.58	0.46	-0.41	6.7	0.005	1.18	0.0	0.05	19.84	0.01	1.938	33.55	1.00	1.9	98.0	0.1	1.55	2.43	0.76	0.84	0.06	148395	19290	105	0	15	0	0	logfile
✔	6T61	10381	2022-07-06	2019-10-17	3.7	3.68	—	3.6	0.006	0.93	0.0	0.05	15.61	0.01	0.321	8.35	0.00	8.1	91.9	0.0	-3.35	0.50	0.77	1.47	3.6	0.005	0.78	0.0	0.04	17.88	0.01	2.085	12.78	0.83	6.1	93.9	0.0	0.77	1.63	0.51	0.79	0.85	30978	3906	18	0	0	0	0	logfile
✔	6GJ1	0009	2022-07-03	2018-05-15	4.7	4.83	—	4.4	0.010	1.51	5.0	0.07	11.65	0.01	0.341	23.90	0.72	18.3	81.3	0.4	-5.15	0.83	0.71	—	4.4	0.003	0.89	0.0	0.05	12.43	0.01	2.086	22.85	0.00	17.1	82.8	0.1	-3.73	1.19	0.85	0.76	—	13013	1638	4	0	0	0	0	logfile
✔	6FKH	4271	2022-07-07	2018-01-24	4.2	4.29	4.16	4.2	0.015	1.45	28.0	0.09	11.91	0.01	0.343	62.35	0.15	3.9	96.0	0.1	-0.16	0.63	0.67	—	4.2	0.004	0.79	0.0	0.04	13.72	0.01	1.890	19.11	0.07	4.1	95.8	0.1	-0.13	1.61	0.69	0.79	—	39231	5201	31	0	10	0	0	logfile
✔	5N61	3593	2022-07-08	2017-02-14	3.4	3.59	—	3.5	0.012	1.19	0.0	0.05	14.76	0.01	0.343	36.53	7.23	9.1	88.8	2.1	-4.08	0.72	0.65	2.60	3.5	0.004	0.76	0.0	0.04	16.29	0.01	1.743	15.61	0.15	5.6	94.2	0.2	-0.54	2.74	0.81	0.83	2.10	48547	5887	27	79	9	0	0	logfile
✔	6HD7	0202	2022-07-07	2018-08-17	3.4	3.54	—	3.3	0.002	0.43	0.0	0.03	14.93	0.00	0.345	25.04	0.08	11.1	87.1	1.9	-3.26	0.66	0.65	0.74	3.3	0.009	0.84	0.0	0.05	17.90	0.01	1.949	19.83	1.00	7.9	91.7	0.4	-1.37	1.56	0.76	0.87	1.74	141153	7514	52	3767	234	0	0	logfile
✘	6XZA	10656	2022-07-07	2020-02-03	2.66	4.00	—	3.8	0.006	0.66	1.0	0.04	14.20	0.00	0.349	6.78	2.91	3.1	96.4	0.4	-1.96	0.72	0.68	2.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	143983	5732	54	4616	1	0	0	logfile
✔	6RDB	4812	2022-07-06	2019-04-12	2.8	2.89	2.82	2.9	0.008	1.00	0.0	0.06	14.82	0.01	0.351	8.72	1.23	4.1	95.8	0.1	-4.44	0.70	0.84	3.24	2.9	0.010	0.70	0.0	0.04	16.52	0.01	1.861	11.00	2.30	3.6	96.4	0.0	-0.15	0.52	0.70	0.86	2.97	33961	4506	31	0	10	40	0	logfile
✔	6SAG	10130	2022-07-03	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.004	0.63	0.0	0.04	15.40	0.01	2.054	3.11	1.17	3.1	96.9	0.0	1.56	0.73	0.60	0.89	6.90	54080	6120	240	120	240	2840	0	logfile
✔	7o3W	12710	2022-07-06	2021-04-03	4.9	6.81	5.80	7.1	0.017	1.84	0.0	0.11	18.08	0.01	0.360	24.19	0.30	3.5	96.4	0.2	1.74	0.66	0.54	—	6.9	0.004	0.92	0.0	0.04	15.56	0.01	2.027	26.13	0.04	1.8	98.1	0.1	1.66	2.06	0.75	0.81	—	138390	17976	98	0	14	0	0	logfile
✔	6EML	3886	2022-07-05	2017-10-02	3.6	3.65	—	3.6	0.014	1.54	11.0	0.10	18.16	0.01	0.382	12.87	1.27	12.5	86.2	1.3	-4.67	0.66	0.77	2.11	3.6	0.006	0.78	1.0	0.04	18.30	0.01	2.090	15.87	0.58	11.4	88.4	0.2	-1.96	1.32	0.67	0.78	1.46	75886	5233	32	1675	0	0	0	logfile

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