Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6SMH	10235	2022-12-20	2019-08-21	4.3	4.36	—	4.3	0.009	1.33	2.0	0.07	17.19	0.04	0.292	54.51	14.61	12.0	85.8	2.2	-4.97	0.68	0.79	—	4.3	0.007	0.93	0.0	0.05	14.32	0.01	1.992	24.35	0.15	12.6	87.0	0.4	-2.46	2.72	0.69	0.81	—	39744	5025	16	0	0	0	0	logfile
✔	6N1R	9318	2022-12-21	2018-11-10	4.0	4.12	—	4.0	0.006	0.89	0.0	0.05	8.46	0.01	0.296	17.83	0.00	8.7	91.3	0.0	-2.90	0.80	0.71	—	4.0	0.004	0.76	0.0	0.05	12.80	0.00	2.118	17.37	0.48	7.1	92.9	0.0	0.31	1.68	0.83	0.78	—	46044	5796	12	0	0	0	0	logfile
✘	3JC5	6535	2022-12-20	2015-11-24	4.7	5.02	—	4.8	0.009	1.54	5.0	0.06	12.17	0.01	0.300	46.35	0.63	9.4	88.9	1.7	-4.21	0.76	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40041	5039	11	0	0	0	0	logfile
✔	8E01	27812	2022-12-16	2022-08-08	3.4	3.80	3.71	3.8	0.002	0.56	0.0	0.04	17.85	0.00	0.307	13.45	0.41	2.0	98.0	0.0	-0.28	0.62	0.59	0.19	3.8	0.006	0.94	14.0	0.06	17.98	0.01	1.639	22.45	0.64	5.4	94.5	0.1	-0.49	1.37	0.72	0.77	1.33	92598	12261	61	0	0	0	0	logfile
✔	6S61	10101	2022-12-14	2019-07-02	1.84	1.89	1.85	1.9	0.011	1.36	0.0	0.06	12.21	0.01	0.312	2.62	1.29	1.8	98.2	0.0	3.69	0.77	0.86	8.46	1.9	0.003	0.57	0.0	0.03	14.82	0.00	1.798	5.19	0.65	1.8	98.2	0.0	4.54	0.74	0.80	0.90	8.65	71060	4128	72	0	30	3854	32904	logfile
✔	6TA3	10421	2022-12-12	2019-10-29	3.8	4.18	—	3.9	0.024	2.45	4.0	0.08	18.76	0.01	0.317	210.77	16.02	0.8	99.2	0.0	1.86	0.67	0.49	0.26	4.0	0.004	0.86	0.0	0.04	17.60	0.01	1.333	27.41	0.78	3.1	96.9	0.0	-0.05	2.41	0.77	0.73	0.40	9491	1201	6	0	5	0	0	logfile
✔	6T61	10381	2022-12-16	2019-10-17	3.7	3.68	—	3.6	0.006	0.93	0.0	0.05	15.61	0.01	0.321	8.35	0.00	8.1	91.9	0.0	-3.35	0.50	0.77	1.47	3.6	0.003	0.76	0.0	0.04	17.80	0.00	2.091	12.21	0.48	6.0	94.0	0.0	0.82	1.64	0.51	0.78	0.72	30978	3906	18	0	0	0	0	logfile
✔	6GJ1	0009	2022-12-13	2018-05-15	4.7	4.83	—	4.4	0.010	1.51	5.0	0.07	11.65	0.01	0.341	23.90	0.72	18.3	81.3	0.4	-5.15	0.83	0.71	—	4.4	0.003	0.89	0.0	0.05	12.54	0.01	2.091	23.54	0.07	17.5	82.4	0.1	-3.80	1.19	0.85	0.76	—	13013	1638	4	0	0	0	0	logfile
✔	6FKH	4271	2022-12-20	2018-01-24	4.2	4.29	4.16	4.2	0.015	1.45	28.0	0.09	11.91	0.01	0.343	62.35	0.15	3.9	96.0	0.1	-0.16	0.63	0.67	—	4.2	0.004	0.79	0.0	0.05	13.67	0.01	1.865	19.09	0.07	4.2	95.8	0.1	-0.09	1.92	0.69	0.80	—	39231	5201	31	0	10	0	0	logfile
✔	5N61	3593	2022-12-22	2017-02-14	3.4	3.59	—	3.5	0.012	1.19	0.0	0.05	14.76	0.01	0.343	36.53	7.23	9.1	88.8	2.1	-4.08	0.72	0.65	2.60	3.5	0.003	0.75	0.0	0.05	16.28	0.01	1.983	15.32	0.34	5.6	94.1	0.2	-0.45	2.75	0.81	0.84	1.97	48547	5887	27	79	9	0	0	logfile
✔	6SAG	10130	2022-12-11	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.004	0.65	0.0	0.04	15.31	0.01	2.030	3.13	1.19	3.0	97.0	0.0	1.39	0.73	0.59	0.89	6.90	54080	6120	240	120	240	2840	0	logfile
✔	6RDB	4812	2022-12-18	2019-04-12	2.8	2.89	2.82	2.9	0.008	1.00	0.0	0.06	14.82	0.01	0.351	8.72	1.23	4.1	95.8	0.1	-4.44	0.70	0.84	3.24	2.9	0.009	0.67	0.0	0.04	16.51	0.01	1.868	11.11	2.44	3.8	96.2	0.0	-0.15	0.54	0.70	0.86	2.92	33961	4506	31	0	10	40	0	logfile
✔	6EML	3886	2022-12-15	2017-10-02	3.6	3.65	—	3.6	0.014	1.54	11.0	0.10	18.16	0.01	0.382	12.87	1.27	12.5	86.2	1.3	-4.67	0.66	0.77	2.11	3.6	0.004	0.75	0.0	0.04	18.33	0.00	2.075	16.57	0.72	12.1	87.7	0.3	-2.00	0.78	0.67	0.78	1.43	75886	5233	32	1675	0	0	0	logfile
✔	6SD3	10147	2022-12-12	2019-07-26	3.3	3.67	—	3.2	0.008	0.84	19.0	0.04	13.90	0.01	0.390	14.35	1.24	10.8	88.5	0.7	-5.37	0.79	0.84	2.93	3.2	0.003	0.65	0.0	0.04	15.22	0.00	2.128	11.22	0.14	3.8	96.2	0.0	-0.41	0.69	0.79	0.85	2.38	63144	8212	34	0	0	0	0	logfile
✔	7KZo	23084	2022-12-11	2020-12-10	3.3	2.88	—	3.3	0.005	0.86	1.0	0.05	15.08	0.01	0.399	14.08	0.29	4.0	96.0	0.0	-1.81	0.77	0.76	2.07	3.3	0.003	0.69	0.0	0.04	17.01	0.00	1.894	11.73	0.29	3.4	96.6	0.0	0.21	1.51	0.78	0.79	1.60	54110	6873	34	8	14	0	0	logfile
✔	6SPD	10282	2022-12-16	2019-09-01	3.28	3.35	—	3.3	0.010	1.16	0.0	0.06	18.38	0.01	0.400	15.54	1.26	12.2	87.1	0.7	-5.12	0.66	0.50	0.28	3.3	0.008	0.86	0.0	0.05	17.63	0.01	1.960	9.82	0.87	12.2	87.7	0.1	-3.18	2.06	0.87	0.87	1.94	90352	3458	32	2967	0	0	0	logfile
✔	6i26	0328	2022-12-14	2018-10-31	4.3	4.37	—	4.2	0.005	0.89	0.0	0.05	8.22	0.01	0.411	6.12	0.50	6.4	93.3	0.3	-6.25	0.75	0.60	—	4.2	0.002	0.67	0.0	0.04	10.66	0.00	2.210	5.49	0.07	5.9	94.1	0.0	0.04	0.98	0.84	0.77	—	22765	3366	1	0	221	0	0	logfile
✘	6YMY	10848	2022-12-18	2020-04-10	3.41	3.81	3.50	3.7	0.008	1.25	0.0	0.06	16.55	0.01	0.424	7.47	0.27	8.9	91.0	0.1	-6.00	0.68	0.82	2.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14612	1766	19	0	16	0	0	logfile
✔	6H05	0108	2022-12-21	2018-07-06	2.9	3.15	—	3.5	0.016	1.09	0.0	0.07	9.74	0.01	0.426	17.81	0.00	8.5	91.5	0.0	-5.50	0.36	0.13	0.50	3.1	0.003	0.86	0.0	0.04	15.56	0.00	2.134	15.94	2.28	4.3	95.7	0.0	-1.34	1.63	0.58	0.47	0.65	44544	5664	24	0	0	0	0	logfile
✔	7SVU	25453	2022-12-15	2021-11-19	3.5	2.79	3.45	3.4	0.020	1.92	12.0	0.11	13.88	0.01	0.437	14.82	0.42	2.3	97.6	0.2	-0.41	0.73	0.74	1.30	3.3	0.003	0.73	0.0	0.04	18.40	0.00	1.934	10.42	0.56	3.3	96.7	0.0	1.11	1.68	0.73	0.80	1.33	28015	3283	35	56	22	0	0	logfile

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