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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3JBU | 6483 | 2024-03-20 | 2015-10-16 | 3.64 | 3.71 | — | 3.6 | 0.008 | 1.32 | 5.0 | 0.10 | 25.15 | 0.01 | 0.232 | 33.71 | 2.84 | 8.0 | 89.1 | 2.9 | -2.66 | 0.70 | 0.74 | 0.87 | 3.6 | 0.004 | 0.75 | 0.0 | 0.04 | 24.18 | 0.01 | 1.980 | 14.04 | 6.19 | 9.1 | 90.4 | 0.5 | -2.32 | 1.60 | 0.72 | 0.78 | 0.96 | 143334 | 5599 | 54 | 4638 | 0 | 0 | 0 | logfile |
✔ | 8PDQ | 17618 | 2024-03-22 | 2023-06-12 | 3.1 | 3.25 | 3.11 | 3.2 | 0.004 | 0.57 | 0.0 | 0.04 | 15.29 | 0.00 | 0.235 | 15.65 | 0.00 | 1.9 | 98.1 | 0.0 | 0.16 | 0.77 | 0.82 | 2.60 | 3.2 | 0.004 | 0.54 | 0.0 | 0.04 | 16.40 | 0.00 | 2.151 | 10.61 | 1.75 | 2.5 | 97.5 | 0.0 | 1.46 | 0.38 | 0.78 | 0.83 | 2.34 | 33176 | 4070 | 33 | 77 | 0 | 0 | 0 | logfile |
✘ | 5UCY | 8539 | 2024-03-19 | 2016-12-22 | 4.6 | 4.99 | — | 4.6 | 0.011 | 1.21 | 3.0 | 0.06 | 13.21 | 0.01 | 0.244 | 89.25 | 0.68 | 11.3 | 88.3 | 0.5 | -4.47 | 0.50 | 0.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24990 | 2610 | 12 | 3 | 6 | 0 | 4452 | logfile |
✔ | 6V4J | 21041 | 2024-03-20 | 2019-11-27 | 2.97 | 2.66 | — | 2.6 | 0.010 | 1.79 | 8.0 | 0.09 | 13.20 | 0.01 | 0.244 | 16.47 | 5.36 | 4.0 | 95.7 | 0.3 | -0.54 | 0.47 | 0.48 | 1.90 | 2.6 | 0.003 | 0.80 | 0.0 | 0.04 | 15.99 | 0.00 | 2.021 | 15.56 | 3.99 | 4.9 | 95.1 | 0.0 | -1.37 | 1.49 | 0.50 | 0.52 | 1.55 | 20637 | 2697 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FYW | 3378 | 2024-03-24 | 2016-03-10 | 4.35 | 4.82 | — | 4.3 | 0.010 | 1.14 | 2.0 | 0.07 | 12.92 | 0.01 | 0.245 | 17.00 | 0.77 | 5.4 | 94.1 | 0.5 | -2.84 | 0.80 | 0.75 | — | 4.3 | 0.005 | 0.75 | 0.0 | 0.04 | 14.52 | 0.00 | 1.914 | 20.04 | 0.02 | 6.3 | 93.5 | 0.2 | 0.22 | 2.89 | 0.83 | 0.81 | — | 41710 | 5176 | 30 | 94 | 11 | 0 | 0 | logfile |
✔ | 6ZXD | 11517 | 2024-03-18 | 2020-07-29 | 3.2 | 3.08 | 3.17 | 3.1 | 0.007 | 0.94 | 0.0 | 0.05 | 22.10 | 0.01 | 0.254 | 5.75 | 0.21 | 7.2 | 92.6 | 0.2 | -3.93 | 0.76 | 0.76 | 2.67 | 3.1 | 0.004 | 0.64 | 0.0 | 0.04 | 22.15 | 0.00 | 2.046 | 8.81 | 3.01 | 4.9 | 95.0 | 0.1 | -0.96 | 1.17 | 0.77 | 0.79 | 2.09 | 80922 | 5944 | 39 | 1645 | 2 | 0 | 0 | logfile |
✔ | 6G51 | 4350 | 2024-03-25 | 2018-03-28 | 4.1 | 4.42 | — | 4.0 | 0.007 | 1.44 | 22.0 | 0.10 | 23.12 | 0.00 | 0.264 | 3.79 | 0.00 | 7.0 | 92.3 | 0.8 | -2.90 | 0.71 | 0.63 | — | 3.9 | 0.006 | 0.99 | 0.0 | 0.05 | 23.53 | 0.00 | 1.946 | 13.84 | 0.00 | 11.5 | 88.3 | 0.2 | -1.82 | 1.48 | 0.80 | 0.69 | — | 50662 | 6237 | 38 | 1659 | 0 | 0 | 0 | logfile |
✔ | 6CB1 | 7445 | 2024-03-15 | 2018-02-01 | 4.6 | 4.77 | — | 4.6 | 0.006 | 1.02 | 0.0 | 0.06 | 23.82 | 0.00 | 0.266 | 5.97 | 0.00 | 5.0 | 94.8 | 0.1 | -2.68 | 0.66 | 0.49 | — | 4.5 | 0.004 | 0.79 | 0.0 | 0.04 | 23.93 | 0.00 | 2.036 | 21.64 | 0.00 | 9.1 | 90.8 | 0.1 | -1.28 | 2.04 | 0.75 | 0.75 | — | 69945 | 6459 | 42 | 1615 | 694 | 0 | 0 | logfile |
✔ | 8SEW | 40431 | 2024-03-18 | 2023-04-10 | 2.89 | 2.97 | 2.87 | 3.0 | 0.004 | 0.59 | 0.0 | 0.04 | 12.56 | 0.00 | 0.267 | 5.77 | 2.14 | 2.1 | 97.7 | 0.2 | 1.93 | 0.60 | 0.79 | 2.44 | 3.0 | 0.003 | 0.57 | 0.0 | 0.04 | 16.66 | 0.00 | 2.225 | 5.86 | 2.76 | 1.6 | 98.2 | 0.2 | 2.05 | 0.56 | 0.60 | 0.81 | 2.25 | 20716 | 2516 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 5NGM | 3640 | 2024-03-19 | 2017-03-18 | 2.9 | 3.05 | — | 3.0 | 0.006 | 0.86 | 0.0 | 0.05 | 24.17 | 0.01 | 0.270 | 7.58 | 0.81 | 8.3 | 91.7 | 0.0 | -4.79 | 0.70 | 0.72 | 2.80 | 3.0 | 0.006 | 0.69 | 0.0 | 0.04 | 23.98 | 0.01 | 1.864 | 11.63 | 5.59 | 7.9 | 92.1 | 0.0 | -2.06 | 0.67 | 0.78 | 0.86 | 2.19 | 140965 | 5610 | 57 | 4559 | 205 | 0 | 0 | logfile |
✔ | 8PDM | 17614 | 2024-03-21 | 2023-06-12 | 3.3 | 3.51 | 3.38 | 3.5 | 0.006 | 0.73 | 0.0 | 0.05 | 15.48 | 0.01 | 0.279 | 15.39 | 0.00 | 2.0 | 98.0 | 0.0 | 0.75 | 0.75 | 0.79 | 1.66 | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 17.31 | 0.00 | 2.167 | 10.45 | 1.62 | 2.8 | 97.2 | 0.0 | 1.63 | 1.22 | 0.76 | 0.80 | 0.86 | 31471 | 3861 | 22 | 77 | 0 | 0 | 0 | logfile |
✔ | 6FTi | 4316 | 2024-03-02 | 2018-02-22 | 4.2 | 4.31 | — | 4.2 | 0.011 | 1.38 | 18.0 | 0.10 | 25.55 | 0.01 | 0.284 | 12.03 | 11.77 | 9.7 | 87.9 | 2.4 | -4.07 | 0.61 | 0.61 | — | 4.2 | 0.004 | 0.78 | 0.0 | 0.04 | 24.07 | 0.01 | 1.148 | 24.17 | 0.06 | 8.2 | 91.2 | 0.5 | -1.60 | 1.00 | 0.63 | 0.66 | — | 153850 | 8349 | 76 | 4014 | 399 | 0 | 0 | logfile |
✔ | 8EEP | 28054 | 2024-03-10 | 2022-09-07 | 2.2 | 2.31 | 2.33 | 2.3 | 0.004 | 1.00 | 0.0 | 0.71 | 22.11 | 0.00 | 0.286 | 7.98 | 1.59 | 0.0 | 100.0 | 0.0 | 1.98 | 0.74 | 0.81 | 4.21 | 2.3 | 0.033 | 1.72 | 0.0 | 0.12 | 19.42 | 0.01 | 1.841 | 9.30 | 1.61 | 0.4 | 99.6 | 0.0 | 1.86 | 1.38 | 0.74 | 0.81 | 3.63 | 108060 | 13260 | 60 | 0 | 120 | 0 | 0 | logfile |
✔ | 6SMH | 10235 | 2024-03-24 | 2019-08-21 | 4.3 | 4.36 | — | 4.3 | 0.009 | 1.33 | 2.0 | 0.07 | 17.19 | 0.04 | 0.292 | 54.32 | 14.61 | 12.0 | 85.8 | 2.2 | -4.97 | 0.68 | 0.79 | — | 4.3 | 0.005 | 0.85 | 0.0 | 0.05 | 14.04 | 0.00 | 1.995 | 21.47 | 0.10 | 11.9 | 87.7 | 0.3 | -2.20 | 2.70 | 0.69 | 0.81 | — | 39744 | 5025 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N1R | 9318 | 2024-03-25 | 2018-11-10 | 4.0 | 4.12 | — | 4.0 | 0.006 | 0.89 | 0.0 | 0.05 | 8.46 | 0.01 | 0.296 | 17.83 | 0.00 | 8.7 | 91.3 | 0.0 | -2.90 | 0.80 | 0.71 | — | 4.0 | 0.003 | 0.70 | 0.0 | 0.04 | 12.86 | 0.00 | 2.199 | 13.03 | 1.30 | 5.4 | 94.6 | 0.0 | 0.33 | 1.31 | 0.82 | 0.77 | — | 46044 | 5796 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 3JC5 | 6535 | 2024-03-24 | 2015-11-24 | 4.7 | 5.02 | — | 4.8 | 0.009 | 1.54 | 5.0 | 0.06 | 12.17 | 0.01 | 0.300 | 46.29 | 0.63 | 9.4 | 88.9 | 1.7 | -4.21 | 0.76 | 0.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40041 | 5039 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 6S61 | 10101 | 2024-03-15 | 2019-07-02 | 1.84 | 1.89 | 1.85 | 1.9 | 0.011 | 1.36 | 0.0 | 0.06 | 12.21 | 0.01 | 0.312 | 2.62 | 1.29 | 1.8 | 98.2 | 0.0 | 3.69 | 0.77 | 0.86 | 8.46 | 1.9 | 0.004 | 0.59 | 0.0 | 0.03 | 14.80 | 0.00 | 1.794 | 4.82 | 0.65 | 1.2 | 98.8 | 0.0 | 4.46 | 0.74 | 0.80 | 0.90 | 8.65 | 71060 | 4128 | 72 | 0 | 30 | 3854 | 32904 | logfile |
✔ | 8DMG | 27536 | 2024-03-17 | 2022-07-08 | 4.4 | 5.39 | 4.50 | 4.6 | 0.029 | 2.33 | 20.0 | 0.12 | 16.95 | 0.01 | 0.312 | 28.72 | 6.80 | 6.0 | 92.3 | 1.7 | -2.43 | 0.79 | 0.61 | — | 4.6 | 0.004 | 0.76 | 0.0 | 0.04 | 13.61 | 0.00 | 1.855 | 87.56 | 0.00 | 6.9 | 93.0 | 0.0 | 0.04 | 2.26 | 0.93 | 0.85 | — | 16844 | 2068 | 4 | 0 | 18 | 0 | 202 | logfile |
✔ | 8EET | 28057 | 2024-03-10 | 2022-09-07 | 3.1 | 3.36 | 3.21 | 3.4 | 0.007 | 0.92 | 0.0 | 0.06 | 12.42 | 0.00 | 0.312 | 9.93 | 1.07 | 0.5 | 99.5 | 0.0 | 1.87 | 0.72 | 0.82 | 3.55 | 3.4 | 0.036 | 2.63 | 0.0 | 0.28 | 22.74 | 0.00 | 0.540 | 13.15 | 1.66 | 1.3 | 98.7 | 0.0 | 2.02 | 1.33 | 0.68 | 0.83 | 3.02 | 107640 | 13260 | 60 | 0 | 120 | 0 | 0 | logfile |
✔ | 6TA3 | 10421 | 2024-03-14 | 2019-10-29 | 3.8 | 4.18 | — | 3.9 | 0.024 | 2.45 | 4.0 | 0.08 | 18.96 | 0.01 | 0.317 | 210.72 | 16.02 | 0.8 | 99.2 | 0.0 | 1.86 | 0.67 | 0.49 | 0.26 | 4.0 | 0.004 | 0.92 | 0.0 | 0.05 | 18.35 | 0.01 | 1.266 | 30.60 | 4.47 | 4.1 | 95.9 | 0.0 | -0.17 | 2.46 | 0.78 | 0.74 | 0.37 | 9491 | 1201 | 6 | 0 | 5 | 0 | 0 | logfile |