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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6YJ5 | 10816 | 2022-05-12 | 2020-04-02 | 3.5 | 2.92 | 3.56 | 3.3 | 0.007 | 0.87 | 0.0 | 0.05 | 13.19 | 0.01 | 2.183 | 4.49 | 0.00 | 12.5 | 87.5 | 0.0 | -5.13 | 0.42 | 0.62 | 3.01 | 3.3 | 0.003 | 0.67 | 0.0 | 0.05 | 15.25 | 0.01 | 2.265 | 8.18 | 0.61 | 8.2 | 91.8 | 0.0 | -1.96 | 0.81 | 0.51 | 0.72 | 2.81 | 2061 | 306 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DWV | 30887 | 2022-05-12 | 2021-01-18 | 3.07 | 2.95 | — | 3.6 | 0.007 | 0.80 | 0.0 | 0.06 | 14.69 | 0.00 | 2.258 | 17.63 | 0.00 | 26.8 | 73.2 | 0.0 | -7.45 | 0.41 | 0.75 | 4.09 | 4.1 | 0.004 | 0.73 | 0.0 | 0.05 | 17.17 | 0.00 | 2.189 | 19.08 | 0.00 | 23.2 | 76.8 | 0.0 | -5.96 | 1.50 | 0.41 | 0.75 | 2.79 | 2064 | 258 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WQK | 21871 | 2022-05-12 | 2020-04-29 | 3.1 | 3.26 | — | 3.3 | 0.003 | 0.70 | 0.0 | 0.04 | 14.47 | 0.00 | 2.272 | 4.54 | 0.00 | 1.8 | 98.2 | 0.0 | -5.40 | 0.48 | 0.84 | 4.99 | 3.3 | 0.004 | 0.72 | 0.0 | 0.05 | 13.47 | 0.00 | 2.242 | 4.54 | 0.00 | 4.4 | 95.6 | 0.0 | -4.42 | 0.47 | 0.47 | 0.86 | 5.39 | 2070 | 285 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GX5 | 0077 | 2022-05-12 | 2018-06-26 | 3.2 | 2.51 | 2.94 | 3.2 | 0.017 | 1.20 | 0.0 | 0.11 | 16.09 | 0.01 | 2.596 | 5.96 | 4.94 | 4.3 | 95.7 | 0.0 | -3.50 | 0.85 | 0.88 | 5.60 | 3.2 | 0.005 | 0.77 | 0.0 | 0.05 | 17.37 | 0.00 | 2.112 | 7.56 | 0.82 | 5.4 | 94.6 | 0.0 | -2.84 | 0.66 | 0.83 | 0.86 | 4.48 | 2133 | 282 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6F1Z | 4172 | 2022-05-12 | 2017-11-23 | 3.4 | 4.16 | — | 3.4 | 0.004 | 0.97 | 0.0 | 0.06 | 11.17 | 0.01 | 2.264 | 12.14 | 0.81 | 8.6 | 91.4 | 0.0 | -4.21 | 0.64 | 0.68 | -1.41 | 3.4 | 0.004 | 1.01 | 0.0 | 0.05 | 16.44 | 0.01 | 2.105 | 24.74 | 0.81 | 7.8 | 92.2 | 0.0 | -1.37 | 1.33 | 0.66 | 0.75 | -0.09 | 2138 | 265 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JV2 | 22491 | 2022-05-12 | 2020-08-20 | 3.5 | 3.49 | 3.41 | 3.7 | 0.015 | 1.39 | 0.0 | 0.08 | 11.43 | 0.01 | 2.587 | 0.00 | 1.32 | 3.6 | 96.4 | 0.0 | 0.82 | 0.69 | 0.74 | 3.48 | 3.7 | 0.004 | 0.74 | 0.0 | 0.04 | 14.94 | 0.00 | 2.254 | 14.51 | 0.44 | 6.9 | 93.1 | 0.0 | -1.07 | 1.28 | 0.70 | 0.77 | 3.71 | 2151 | 282 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PY2 | 13708 | 2022-05-12 | 2021-10-08 | 2.59 | 2.64 | 1.53 | 2.7 | 0.015 | 1.83 | 0.0 | 0.08 | 17.26 | 0.01 | 2.423 | 1.71 | 2.00 | 9.1 | 90.9 | 0.0 | -5.22 | 0.45 | 0.84 | 6.05 | 2.8 | 0.004 | 0.86 | 0.0 | 0.05 | 18.18 | 0.00 | 2.155 | 2.93 | 4.00 | 5.2 | 94.8 | 0.0 | -3.95 | 1.38 | 0.50 | 0.88 | 5.97 | 2152 | 316 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VV0 | 32133 | 2022-05-12 | 2021-11-04 | 3.5 | 3.69 | — | 3.7 | 0.010 | 1.49 | 1.0 | 0.09 | 14.09 | 0.01 | 2.007 | 11.04 | 2.93 | 4.5 | 95.5 | 0.0 | -3.44 | 0.65 | 0.80 | 1.76 | 3.7 | 0.003 | 0.61 | 0.0 | 0.04 | 15.15 | 0.00 | 2.257 | 7.66 | 0.84 | 4.2 | 95.8 | 0.0 | 2.03 | 1.25 | 0.64 | 0.80 | 1.65 | 2175 | 268 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 7VV4 | 32137 | 2022-05-12 | 2021-11-04 | 2.97 | 3.66 | — | 3.7 | 0.007 | 1.20 | 2.0 | 0.09 | 14.57 | 0.01 | 1.600 | 16.21 | 3.75 | 4.2 | 95.8 | 0.0 | -0.53 | 0.64 | 0.78 | 2.05 | 3.7 | 0.003 | 0.71 | 0.0 | 0.04 | 16.91 | 0.00 | 2.171 | 10.81 | 1.67 | 1.9 | 97.7 | 0.4 | 2.21 | 0.61 | 0.59 | 0.77 | 1.02 | 2181 | 269 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7B6E | 12053 | 2022-05-12 | 2020-12-07 | 4.5 | 2.79 | — | 5.1 | 0.005 | 1.03 | 0.0 | 0.05 | 15.04 | 0.01 | 2.129 | 36.28 | 0.00 | 10.9 | 89.1 | 0.0 | -3.88 | 0.62 | 0.66 | — | 5.1 | 0.004 | 0.97 | 0.0 | 0.05 | 15.19 | 0.01 | 2.191 | 25.33 | 0.00 | 10.6 | 89.4 | 0.0 | -1.71 | 0.86 | 0.61 | 0.66 | — | 2205 | 269 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PEo | 20328 | 2022-05-12 | 2019-06-20 | 3.3 | 3.52 | — | 3.6 | 0.003 | 0.54 | 0.0 | 0.05 | 13.06 | 0.01 | 2.492 | 10.62 | 0.00 | 9.7 | 90.3 | 0.0 | -1.64 | 0.41 | 0.82 | 3.20 | 3.6 | 0.006 | 0.64 | 0.0 | 0.06 | 15.74 | 0.00 | 2.435 | 9.07 | 0.00 | 8.1 | 91.9 | 0.0 | -2.61 | 1.64 | 0.42 | 0.83 | 4.88 | 2205 | 320 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZRF | 11380 | 2022-05-12 | 2020-07-13 | 3.6 | 3.66 | 1.96 | 3.6 | 0.014 | 1.03 | 0.0 | 0.05 | 13.43 | 0.00 | 1.993 | 42.14 | 0.00 | 4.9 | 95.1 | 0.0 | -6.22 | 0.67 | 0.79 | 1.84 | 3.7 | 0.003 | 0.73 | 0.0 | 0.04 | 14.44 | 0.00 | 2.284 | 18.31 | 0.42 | 10.6 | 89.4 | 0.0 | -5.84 | 0.52 | 0.69 | 0.81 | 3.45 | 2220 | 300 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VV6 | 32139 | 2022-05-12 | 2021-11-04 | 3.3 | 3.47 | — | 3.5 | 0.010 | 1.43 | 0.0 | 0.07 | 18.51 | 0.01 | 2.291 | 4.89 | 10.37 | 5.2 | 94.8 | 0.0 | -4.22 | 0.62 | 0.83 | 1.64 | 3.4 | 0.003 | 0.62 | 0.0 | 0.04 | 17.09 | 0.00 | 2.173 | 6.44 | 0.00 | 3.0 | 97.0 | 0.0 | 3.04 | 0.68 | 0.62 | 0.85 | 2.20 | 2227 | 271 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6L4S | 0833 | 2022-05-12 | 2019-10-21 | 3.37 | 3.47 | — | 4.0 | 0.014 | 1.36 | 0.0 | 0.09 | 10.28 | 0.01 | 2.408 | 7.28 | 0.00 | 5.7 | 94.3 | 0.0 | -3.73 | 0.28 | 0.67 | 4.12 | 4.1 | 0.008 | 0.87 | 0.0 | 0.06 | 15.50 | 0.00 | 2.214 | 12.64 | 0.44 | 14.5 | 85.5 | 0.0 | -3.63 | 3.12 | 0.35 | 0.75 | 2.16 | 2268 | 330 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QL2 | 14061 | 2022-05-12 | 2021-12-19 | 2.95 | 2.96 | 2.65 | 3.1 | 0.010 | 2.11 | 2.0 | 0.11 | 10.98 | 0.01 | 2.674 | 0.00 | 0.00 | 7.6 | 92.4 | 0.0 | -2.82 | 0.30 | 0.74 | 4.50 | 3.4 | 0.005 | 0.63 | 0.0 | 0.05 | 12.52 | 0.01 | 2.550 | 1.75 | 2.96 | 9.0 | 91.0 | 0.0 | -3.01 | 0.80 | 0.25 | 0.74 | 5.06 | 2286 | 150 | 3 | 0 | 0 | 0 | 1179 | logfile |
✔ | 6QPi | 4614 | 2022-05-12 | 2019-02-14 | 3.3 | 3.37 | 2.73 | 3.4 | 0.005 | 0.70 | 0.0 | 0.04 | 6.59 | 0.01 | 2.432 | 2.09 | 0.00 | 1.4 | 98.6 | 0.0 | -3.02 | 0.39 | 0.62 | — | 3.3 | 0.002 | 0.44 | 0.0 | 0.04 | 4.28 | 0.00 | 2.462 | 1.49 | 0.00 | 2.8 | 97.2 | 0.0 | 2.25 | 1.20 | 0.41 | 0.62 | — | 2288 | 462 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M62 | 23687 | 2022-05-12 | 2021-03-25 | 3.9 | 3.91 | — | 4.3 | 0.007 | 1.13 | 0.0 | 0.07 | 14.83 | 0.00 | 2.321 | 32.83 | 0.00 | 23.3 | 76.7 | 0.0 | -4.97 | 0.55 | 0.62 | 2.27 | 4.3 | 0.003 | 0.99 | 0.0 | 0.05 | 15.87 | 0.00 | 2.105 | 21.17 | 0.00 | 22.7 | 77.3 | 0.0 | -4.56 | 2.11 | 0.57 | 0.65 | 3.17 | 2380 | 320 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 7RZQ | 24774 | 2022-05-12 | 2021-08-27 | 2.09 | 2.26 | — | 2.7 | 0.006 | 0.40 | 0.0 | 0.03 | 14.23 | 0.00 | 2.339 | 4.69 | 0.00 | 1.9 | 98.1 | 0.0 | 2.15 | 0.78 | 0.79 | 1.56 | 2.0 | 0.003 | 0.30 | 0.0 | 0.03 | 15.08 | 0.00 | 2.337 | 5.30 | 0.36 | 0.0 | 100.0 | 0.0 | 5.90 | 0.30 | 0.81 | 0.82 | 1.87 | 2421 | 322 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7L7H | 23212 | 2022-05-12 | 2020-12-28 | 4.0 | 2.39 | — | 4.0 | 0.008 | 1.47 | 0.0 | 0.08 | 15.10 | 0.01 | 2.199 | 13.87 | 3.53 | 36.3 | 63.7 | 0.0 | -6.00 | 0.47 | 0.60 | — | 4.0 | 0.005 | 0.99 | 0.0 | 0.06 | 16.55 | 0.00 | 2.113 | 18.49 | 1.96 | 32.1 | 67.9 | 0.0 | -4.69 | 0.91 | 0.51 | 0.65 | — | 2430 | 352 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N9A | 24253 | 2022-05-12 | 2021-06-17 | 3.5 | 2.68 | — | 2.4 | 0.007 | 1.26 | 0.0 | 0.06 | 12.63 | 0.01 | 2.135 | 19.96 | 0.00 | 2.9 | 97.1 | 0.0 | -0.16 | 0.72 | 0.70 | 2.72 | 2.4 | 0.003 | 0.71 | 0.0 | 0.04 | 15.45 | 0.00 | 2.164 | 13.87 | 0.00 | 2.9 | 97.1 | 0.0 | -1.00 | 0.56 | 0.73 | 0.70 | 1.84 | 2431 | 312 | 2 | 0 | 0 | 0 | 0 | logfile |