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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7VV6 | 32139 | 2023-04-19 | 2021-11-04 | 3.3 | 3.47 | — | 3.5 | 0.010 | 1.38 | 0.0 | 0.07 | 19.04 | 0.01 | 2.291 | 4.89 | 10.37 | 5.2 | 94.8 | 0.0 | -4.22 | 0.62 | 0.83 | 1.64 | 3.4 | 0.004 | 0.65 | 0.0 | 0.04 | 17.06 | 0.00 | 2.195 | 6.88 | 0.00 | 3.3 | 96.7 | 0.0 | 2.95 | 0.67 | 0.65 | 0.86 | 1.49 | 2227 | 271 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 8EA0 | 27970 | 2023-04-19 | 2022-08-27 | 2.56 | 2.05 | 2.66 | 1.9 | 0.003 | 0.55 | 0.0 | 0.04 | 12.24 | 0.00 | 2.237 | 8.88 | 0.00 | 4.3 | 95.7 | 0.0 | -0.24 | 0.72 | 0.77 | 2.21 | 1.9 | 0.003 | 0.56 | 0.0 | 0.04 | 15.18 | 0.00 | 2.051 | 8.02 | 0.84 | 5.3 | 94.7 | 0.0 | 1.64 | 0.46 | 0.74 | 0.80 | 3.17 | 2286 | 285 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6QPi | 4614 | 2023-04-19 | 2019-02-14 | 3.3 | 3.37 | 2.73 | 3.4 | 0.005 | 0.70 | 0.0 | 0.04 | 6.59 | 0.01 | 2.432 | 2.09 | 0.00 | 1.4 | 98.6 | 0.0 | -3.02 | 0.39 | 0.62 | — | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 5.28 | 0.00 | 2.448 | 1.19 | 0.00 | 2.6 | 97.4 | 0.0 | 1.11 | 0.59 | 0.41 | 0.64 | — | 2288 | 462 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7T2E | 25611 | 2023-04-19 | 2021-12-03 | 2.7 | 3.14 | — | 3.0 | 0.003 | 0.54 | 0.0 | 0.04 | 16.11 | 0.00 | 2.242 | 1.92 | 1.18 | 0.3 | 99.7 | 0.0 | 0.14 | 0.34 | 0.84 | 5.04 | 3.0 | 0.002 | 0.49 | 0.0 | 0.04 | 16.21 | 0.00 | 2.222 | 2.35 | 1.18 | 0.3 | 99.7 | 0.0 | 0.45 | 0.13 | 0.36 | 0.86 | 4.79 | 2390 | 312 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZQ | 24774 | 2023-04-19 | 2021-08-27 | 2.09 | 2.26 | — | 2.7 | 0.006 | 0.40 | 0.0 | 0.03 | 14.23 | 0.00 | 2.339 | 4.69 | 0.00 | 1.9 | 98.1 | 0.0 | 2.15 | 0.78 | 0.79 | 1.56 | 2.0 | 0.003 | 0.31 | 0.0 | 0.03 | 15.07 | 0.00 | 2.343 | 5.71 | 0.00 | 0.0 | 100.0 | 0.0 | 5.84 | 0.30 | 0.82 | 0.82 | 2.01 | 2421 | 322 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N9A | 24253 | 2023-04-20 | 2021-06-17 | 3.5 | 2.68 | — | 2.4 | 0.007 | 1.26 | 0.0 | 0.06 | 12.63 | 0.01 | 2.135 | 19.96 | 0.00 | 2.9 | 97.1 | 0.0 | -0.16 | 0.72 | 0.70 | 2.72 | 2.4 | 0.003 | 0.68 | 0.0 | 0.04 | 15.36 | 0.01 | 2.150 | 14.08 | 0.39 | 3.6 | 96.4 | 0.0 | -0.97 | 0.55 | 0.73 | 0.70 | 2.00 | 2431 | 312 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZU | 24778 | 2023-04-19 | 2021-08-27 | 2.3 | 2.32 | — | 2.0 | 0.006 | 0.50 | 0.0 | 0.04 | 13.61 | 0.01 | 2.212 | 7.50 | 0.00 | 2.9 | 97.1 | 0.0 | 1.69 | 0.77 | 0.78 | 1.84 | 2.0 | 0.002 | 0.48 | 0.0 | 0.03 | 15.88 | 0.00 | 2.308 | 6.69 | 1.40 | 0.0 | 100.0 | 0.0 | 5.49 | 0.47 | 0.80 | 0.81 | 1.54 | 2439 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZS | 24776 | 2023-04-19 | 2021-08-27 | 2.52 | 2.32 | — | 2.1 | 0.005 | 0.46 | 0.0 | 0.03 | 14.73 | 0.00 | 2.273 | 3.04 | 0.00 | 1.0 | 99.0 | 0.0 | 1.98 | 0.77 | 0.79 | 1.82 | 2.0 | 0.003 | 0.42 | 0.0 | 0.04 | 16.16 | 0.00 | 2.327 | 4.66 | 0.35 | 0.0 | 100.0 | 0.0 | 5.95 | 1.19 | 0.79 | 0.82 | 1.19 | 2445 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZR | 24775 | 2023-04-19 | 2021-08-27 | 2.27 | 2.24 | — | 2.0 | 0.007 | 0.40 | 0.0 | 0.04 | 14.34 | 0.00 | 2.436 | 3.23 | 0.00 | 1.9 | 98.1 | 0.0 | 2.50 | 0.79 | 0.80 | 3.37 | 2.0 | 0.002 | 0.36 | 0.0 | 0.03 | 15.29 | 0.00 | 2.294 | 4.44 | 0.71 | 0.0 | 100.0 | 0.0 | 6.53 | 0.31 | 0.81 | 0.83 | 3.42 | 2448 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8C8P | 16490 | 2023-04-19 | 2023-01-20 | 4.1 | 5.09 | 4.13 | 5.5 | 0.002 | 0.67 | 0.0 | 0.05 | 13.50 | 0.00 | 2.267 | 6.06 | 0.00 | 2.6 | 97.4 | 0.0 | -2.08 | 0.66 | 0.67 | — | 5.0 | 0.003 | 0.74 | 0.0 | 0.04 | 13.37 | 0.00 | 2.169 | 18.39 | 0.00 | 4.8 | 95.2 | 0.0 | -1.28 | 1.17 | 0.68 | 0.71 | — | 2449 | 314 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZT | 24777 | 2023-04-19 | 2021-08-27 | 2.35 | 2.27 | — | 2.1 | 0.005 | 0.32 | 0.0 | 0.03 | 14.89 | 0.00 | 2.388 | 3.83 | 0.00 | 2.9 | 97.1 | 0.0 | 2.81 | 0.77 | 0.79 | 2.62 | 2.0 | 0.003 | 0.32 | 0.0 | 0.03 | 15.52 | 0.00 | 2.337 | 5.44 | 0.35 | 0.0 | 100.0 | 0.0 | 6.26 | 0.24 | 0.80 | 0.83 | 2.93 | 2451 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8G8E | 29846 | 2023-04-19 | 2023-02-17 | 4.2 | 7.38 | 5.01 | 5.9 | 0.004 | 0.73 | 0.0 | 0.04 | 28.65 | 0.00 | 2.277 | 15.90 | 0.79 | 1.5 | 98.5 | 0.0 | 0.35 | 0.81 | 0.66 | — | 6.0 | 0.003 | 0.63 | 0.0 | 0.03 | 28.39 | 0.00 | 2.243 | 15.67 | 0.00 | 2.9 | 97.1 | 0.0 | -0.23 | 1.84 | 0.91 | 0.85 | — | 2464 | 140 | 3 | 64 | 0 | 0 | 0 | logfile |
✔ | 8Di5 | 27439 | 2023-04-19 | 2022-06-28 | 3.04 | 3.55 | 3.03 | 3.5 | 0.006 | 0.95 | 0.0 | 0.06 | 12.37 | 0.01 | 2.300 | 4.17 | 0.38 | 3.3 | 96.7 | 0.0 | -2.40 | 0.65 | 0.80 | 4.29 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 16.01 | 0.00 | 2.309 | 11.48 | 0.75 | 3.3 | 96.7 | 0.0 | -1.55 | 0.53 | 0.64 | 0.80 | 3.57 | 2467 | 311 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 8DM0 | 27522 | 2023-04-19 | 2022-07-08 | 3.21 | 3.62 | 3.12 | 3.5 | 0.006 | 1.01 | 0.0 | 0.06 | 12.69 | 0.01 | 2.288 | 0.83 | 0.00 | 3.5 | 96.5 | 0.0 | -1.78 | 0.59 | 0.80 | 3.29 | 3.6 | 0.004 | 0.63 | 0.0 | 0.04 | 14.82 | 0.00 | 2.185 | 8.26 | 0.00 | 3.5 | 96.5 | 0.0 | -0.86 | 0.48 | 0.60 | 0.82 | 2.80 | 2480 | 314 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 8DLY | 27520 | 2023-04-19 | 2022-07-08 | 3.0 | 3.63 | 2.92 | 3.6 | 0.005 | 0.94 | 0.0 | 0.06 | 12.37 | 0.01 | 2.317 | 1.86 | 0.37 | 3.5 | 96.5 | 0.0 | -1.46 | 0.63 | 0.81 | 3.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2483 | 314 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 6YV1 | 10940 | 2023-04-19 | 2020-04-27 | 3.4 | 4.09 | 3.01 | 3.7 | 0.002 | 0.58 | 0.0 | 0.04 | 12.66 | 0.00 | 2.272 | 8.02 | 1.85 | 1.0 | 99.0 | 0.0 | -4.45 | 0.52 | 0.76 | 1.48 | 3.7 | 0.003 | 0.65 | 0.0 | 0.04 | 13.97 | 0.00 | 2.248 | 6.45 | 0.00 | 2.2 | 97.8 | 0.0 | 1.32 | 0.60 | 0.50 | 0.86 | 1.34 | 2496 | 328 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MLU | 9146 | 2023-04-19 | 2018-09-28 | 4.0 | 4.03 | — | 4.0 | 0.005 | 1.05 | 0.0 | 0.06 | 9.86 | 0.01 | 2.406 | 5.97 | 0.69 | 10.6 | 89.4 | 0.0 | -4.38 | 0.40 | 0.78 | — | 4.0 | 0.005 | 1.16 | 0.0 | 0.06 | 17.79 | 0.01 | 2.194 | 31.82 | 1.39 | 15.2 | 84.8 | 0.0 | -2.34 | 3.45 | 0.43 | 0.76 | — | 2516 | 306 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MJi | 23874 | 2023-04-19 | 2021-04-20 | 2.81 | 3.32 | — | 3.2 | 0.006 | 0.81 | 0.0 | 0.05 | 12.46 | 0.01 | 2.367 | 2.85 | 0.00 | 2.8 | 97.2 | 0.0 | -0.83 | 0.56 | 0.84 | 4.52 | 3.2 | 0.003 | 0.57 | 0.0 | 0.04 | 15.08 | 0.00 | 2.315 | 7.94 | 1.47 | 3.2 | 96.8 | 0.0 | 0.06 | 1.05 | 0.57 | 0.85 | 4.44 | 2522 | 320 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 7UL4 | 26591 | 2023-04-19 | 2022-04-03 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2524 | 351 | 3 | 0 | 1 | 4 | 0 | logfile |
✔ | 8CZi | 27098 | 2023-04-19 | 2022-05-24 | 2.22 | 2.26 | 2.61 | 2.0 | 0.004 | 0.33 | 0.0 | 0.03 | 14.48 | 0.00 | 2.382 | 6.62 | 0.00 | 0.0 | 100.0 | 0.0 | 2.90 | 0.78 | 0.80 | 1.97 | 2.0 | 0.004 | 0.39 | 0.0 | 0.03 | 15.18 | 0.00 | 2.140 | 5.65 | 0.34 | 0.0 | 100.0 | 0.0 | 5.55 | 0.85 | 0.83 | 0.84 | 1.84 | 2550 | 339 | 6 | 0 | 0 | 0 | 0 | logfile |