Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6QPi	4614	2021-08-07	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.003	0.52	0.0	0.04	5.17	0.00	2.483	1.49	0.00	2.8	97.2	0.0	0.96	1.21	0.42	0.63	—	2288	462	2	0	0	0	0	logfile
✘	7N9A	24253	2021-08-07	2021-06-17	3.5	2.68	—	2.4	0.007	1.26	0.0	0.06	12.63	0.01	2.135	19.75	0.00	2.9	97.1	0.0	-0.16	0.72	0.70	2.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2431	312	2	0	0	0	0	logfile
✔	6TJo	10512	2021-08-07	2019-11-26	3.2	3.43	2.57	3.5	0.013	1.18	0.0	0.07	9.67	0.01	2.394	2.20	0.00	12.7	87.3	0.0	-4.63	0.36	0.76	4.64	3.5	0.005	0.81	0.0	0.05	13.39	0.00	2.307	8.21	1.06	9.5	90.5	0.0	-3.71	1.42	0.36	0.78	3.84	2439	321	3	0	0	0	0	logfile
✔	6VHA	21201	2021-08-07	2020-01-09	4.3	4.35	—	7.8	0.007	1.02	0.0	0.05	15.14	0.01	2.319	25.04	2.13	12.4	87.6	0.0	-4.78	0.55	0.54	—	4.1	0.004	0.80	0.0	0.05	13.30	0.00	2.320	14.82	0.00	11.1	88.9	0.0	-4.20	3.45	0.45	0.48	—	2439	321	3	0	0	0	0	logfile
✔	6YV1	10940	2021-08-07	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.77	1.48	3.7	0.003	0.67	0.0	0.04	14.42	0.00	2.288	7.04	0.00	2.6	97.4	0.0	1.10	0.66	0.51	0.86	1.34	2496	328	1	0	0	0	0	logfile
✔	6MLU	9146	2021-08-07	2018-09-28	4.0	4.03	—	4.0	0.005	1.05	0.0	0.06	9.86	0.01	2.406	5.97	0.69	10.6	89.4	0.0	-4.38	0.40	0.78	—	4.0	0.005	1.13	0.0	0.06	17.83	0.01	2.235	23.47	1.39	15.6	84.4	0.0	-2.41	4.15	0.44	0.76	—	2516	306	2	0	0	0	0	logfile
✔	7MJi	23874	2021-08-07	2021-04-20	2.81	3.32	—	3.2	0.006	0.80	0.0	0.05	12.43	0.01	2.367	2.85	0.00	2.8	97.2	0.0	-0.83	0.56	0.84	4.52	3.2	0.003	0.59	0.0	0.04	15.62	0.00	2.347	6.51	2.57	2.5	97.5	0.0	-0.01	1.44	0.58	0.85	4.26	2522	320	3	0	1	0	0	logfile
✔	7LXW	23577	2021-08-07	2021-03-05	2.8	3.13	2.86	3.2	0.012	1.20	0.0	0.07	10.03	0.01	2.593	0.41	0.00	1.3	98.7	0.0	0.97	0.78	0.81	5.37	3.2	0.005	0.72	0.0	0.06	15.39	0.01	2.238	10.16	1.90	1.7	98.3	0.0	0.49	0.75	0.79	0.84	5.56	2524	317	5	0	5	0	0	logfile
✔	6N37	9339	2021-08-07	2018-11-14	3.8	3.51	—	4.2	0.009	1.42	0.0	0.06	16.98	0.01	2.399	12.55	0.00	14.7	85.3	0.0	-5.92	0.51	0.77	3.18	3.6	0.004	0.82	0.0	0.04	18.22	0.00	2.251	23.31	1.60	8.8	91.2	0.0	-5.12	0.93	0.52	0.77	2.56	2580	360	10	0	0	0	0	logfile
✔	6LRQ	0958	2021-08-07	2020-01-16	3.49	3.59	—	4.0	0.009	0.85	0.0	0.05	11.88	0.00	2.205	20.30	0.00	14.8	85.2	0.0	-4.51	0.46	0.71	1.87	3.6	0.002	0.65	0.0	0.05	14.43	0.00	2.290	9.50	0.74	6.8	93.2	0.0	-2.39	1.03	0.44	0.66	0.90	2628	378	6	0	0	0	0	logfile
✘	6N3B	9350	2021-08-07	2018-11-14	3.8	3.75	—	4.0	0.010	1.21	0.0	0.05	11.40	0.01	2.253	20.70	0.00	13.7	86.3	0.0	-5.17	0.41	0.71	2.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2735	385	10	0	0	0	0	logfile
✔	6VPS	21316	2021-08-07	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.89	6.11	2.7	0.002	0.48	0.0	0.03	19.69	0.00	2.391	3.50	1.63	6.9	93.1	0.0	-3.67	1.20	0.47	0.87	6.71	2736	279	9	0	0	0	0	logfile
✔	7LXX	23578	2021-08-07	2021-03-05	3.0	2.96	3.03	3.2	0.012	1.18	0.0	0.06	10.07	0.01	2.519	0.38	0.00	3.6	96.4	0.0	0.69	0.75	0.78	4.22	3.1	0.005	0.71	0.0	0.05	14.55	0.00	2.130	9.82	3.16	4.5	95.5	0.0	-0.40	1.61	0.75	0.81	4.51	2740	352	5	0	4	0	0	logfile
✔	6UUR	20900	2021-08-07	2019-10-31	3.5	3.51	—	3.6	0.004	0.76	0.0	0.05	15.65	0.00	2.644	8.15	0.00	5.3	94.7	0.0	-4.46	0.56	0.78	3.10	3.6	0.007	0.95	0.0	0.05	16.09	0.00	2.169	14.31	1.20	8.7	91.3	0.0	-4.58	2.24	0.52	0.80	3.17	2770	400	10	0	0	0	0	logfile
✔	7R7N	24299	2021-08-07	2021-06-25	3.95	4.08	3.93	4.1	0.010	1.26	0.0	0.07	9.44	0.00	2.553	0.58	0.45	3.2	96.8	0.0	0.00	0.81	0.77	3.23	4.0	0.005	0.79	0.0	0.05	14.92	0.01	2.191	10.27	0.45	7.0	93.0	0.0	-1.15	1.35	0.84	0.80	2.40	2790	391	4	0	3	0	0	logfile
✔	7LY0	23581	2021-08-07	2021-03-05	2.6	2.57	2.63	2.7	0.012	1.17	0.0	0.08	9.71	0.01	2.515	0.55	0.36	1.2	98.8	0.0	1.70	0.61	0.70	5.23	2.7	0.011	1.09	0.0	0.05	15.81	0.01	2.125	9.02	2.50	2.7	97.3	0.0	0.44	1.63	0.69	0.76	3.88	2805	354	5	0	6	0	0	logfile
✔	6CU8	7619	2021-08-07	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.3	0.005	0.79	0.0	0.06	12.77	0.00	2.126	17.71	0.97	19.2	80.8	0.0	-3.55	2.57	0.44	0.74	2.25	2880	410	10	0	0	0	0	logfile
✔	6RiU	4898	2021-08-07	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.002	0.66	0.0	0.03	16.44	0.00	2.076	12.47	0.66	3.9	96.1	0.0	-0.19	1.47	0.61	0.75	1.30	2882	182	2	0	0	0	1430	logfile
✔	7CAH	30331	2021-08-07	2020-06-08	3.9	4.13	—	4.0	0.005	0.92	0.0	0.05	13.68	0.01	2.137	18.79	0.00	19.9	79.8	0.3	-5.76	0.68	0.64	2.37	4.0	0.004	0.83	0.0	0.05	15.09	0.01	2.157	15.44	0.00	18.4	81.6	0.0	-4.06	1.12	0.71	0.66	1.51	2889	404	3	0	0	0	0	logfile
✔	6HUD	0274	2021-08-07	2018-10-06	4.0	4.06	—	4.3	0.007	1.12	0.0	0.07	8.28	0.01	2.216	5.62	0.00	8.2	91.8	0.0	-5.06	0.59	0.76	—	4.3	0.006	0.85	0.0	0.05	13.13	0.01	2.142	22.67	0.91	11.5	88.5	0.0	-4.95	1.54	0.61	0.79	—	2905	385	5	0	0	0	0	logfile

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