Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6LN9	0928	2022-12-11	2019-12-28	3.4	3.61	3.06	3.6	0.003	0.54	0.0	0.04	12.32	0.00	2.075	7.70	0.00	4.1	95.9	0.0	-3.36	0.63	0.73	1.41	3.6	0.003	0.60	0.0	0.04	14.86	0.00	1.358	10.76	0.24	4.5	95.5	0.0	-0.23	0.53	0.62	0.75	1.21	7612	987	1	0	2	0	0	logfile
✔	6FU8	4319	2022-12-11	2018-02-26	3.2	4.43	2.97	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.003	0.82	0.0	0.04	14.91	0.00	2.261	15.40	0.00	10.0	88.8	1.2	-1.84	3.11	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	6TAX	10429	2022-12-19	2019-10-31	3.2	2.63	—	1.9	0.009	1.13	0.0	0.06	11.18	0.01	2.065	5.52	0.46	9.5	90.3	0.2	-4.10	0.88	0.80	3.18	1.9	0.002	0.67	0.0	0.04	13.73	0.00	2.032	10.32	0.23	8.0	92.0	0.0	-0.17	1.60	0.88	0.81	2.02	35235	4349	1	0	71	0	0	logfile
✔	6KWX	0780	2022-12-13	2019-09-09	3.75	4.07	—	4.0	0.011	1.55	1.0	0.17	12.89	0.01	1.627	13.88	1.69	9.0	90.6	0.3	-4.69	0.68	0.72	1.40	4.0	0.004	0.88	0.0	0.05	17.14	0.00	2.133	15.70	0.63	7.2	92.8	0.0	-0.78	1.45	0.69	0.80	0.86	14227	1751	1	0	2	0	0	logfile
✔	6L42	0828	2022-12-13	2019-10-15	3.4	3.83	—	3.7	0.013	3.32	109.0	0.17	16.55	0.02	1.223	41.60	6.61	11.4	86.6	2.0	-5.16	0.79	0.75	1.25	3.7	0.003	0.89	0.0	0.04	16.65	0.01	2.077	12.86	0.67	10.3	89.4	0.3	-2.64	0.84	0.82	0.83	1.49	14827	1864	1	0	1	0	0	logfile
✔	6Y6K	10706	2022-12-12	2020-02-26	3.78	3.86	—	3.8	0.012	0.99	1.0	0.06	16.00	0.01	1.889	11.51	2.36	12.5	87.4	0.2	-5.70	0.75	0.88	2.58	3.8	0.003	0.64	0.0	0.04	16.81	0.00	1.988	4.79	0.35	5.7	94.2	0.1	-2.59	1.33	0.76	0.86	2.08	10351	1299	1	0	1	0	0	logfile
✔	6D3R	7793	2022-12-11	2018-04-16	4.3	4.80	4.40	4.5	0.017	1.75	0.0	0.10	9.07	0.01	2.385	0.71	0.00	1.5	98.5	0.0	0.66	0.66	0.76	—	4.6	0.003	0.63	0.0	0.04	11.99	0.00	2.245	7.92	0.00	2.6	97.4	0.0	1.98	1.20	0.67	0.77	—	7610	1127	1	0	2	0	0	logfile
✔	6LLY	0915	2022-12-11	2019-12-24	2.8	2.92	2.72	2.9	0.003	0.60	0.0	0.04	12.24	0.00	2.043	6.26	0.12	3.1	96.9	0.0	-4.03	0.66	0.79	2.62	2.9	0.003	0.57	0.0	0.04	15.47	0.00	1.330	8.18	1.16	2.9	97.1	0.0	0.06	0.49	0.64	0.80	1.86	7774	1006	1	0	2	0	0	logfile
✔	6WBY	21601	2022-12-12	2020-03-27	3.4	3.73	3.45	3.6	0.010	1.04	0.0	0.06	12.68	0.01	2.042	3.28	0.32	6.3	93.6	0.1	-5.12	0.78	0.87	3.21	3.6	0.003	0.63	0.0	0.04	13.46	0.00	2.224	5.85	0.11	4.4	95.6	0.0	-0.48	0.36	0.76	0.87	2.48	9156	1250	1	0	2	0	0	logfile
✔	6YJ5	10816	2022-12-11	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.49	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.004	0.71	0.0	0.05	15.00	0.01	2.270	8.98	0.00	10.5	89.5	0.0	-1.97	0.80	0.50	0.72	3.38	2061	306	1	0	0	0	0	logfile
✘	6WBX	21600	2022-12-18	2020-03-27	3.5	3.82	3.55	3.7	0.012	1.07	0.0	0.06	13.49	0.01	2.190	4.07	0.11	7.9	92.0	0.1	-5.51	0.77	0.87	3.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9170	1264	1	0	2	0	0	logfile
✔	7KTV	23031	2022-12-11	2020-11-24	4.5	4.83	—	4.5	0.006	1.06	0.0	0.06	12.50	0.01	2.221	17.73	0.12	6.5	93.5	0.0	-5.20	0.80	0.79	—	6.7	0.003	0.75	0.0	0.04	13.26	0.00	2.123	21.97	0.12	4.4	95.6	0.0	-0.21	0.83	0.80	0.77	—	7577	995	1	0	0	0	0	logfile
✔	6XE6	22144	2022-12-11	2020-06-12	4.53	4.61	—	4.5	0.011	1.40	2.0	0.07	14.92	0.01	1.098	10.14	1.05	11.3	87.4	1.2	-4.98	0.52	0.76	—	4.5	0.003	0.76	0.0	0.04	13.55	0.00	2.180	13.85	0.00	9.8	89.7	0.5	-1.86	1.21	0.53	0.75	—	6530	826	1	0	6	0	0	logfile
✔	7JGD	22323	2022-12-14	2020-07-19	3.38	3.68	—	3.6	0.002	0.43	0.0	0.05	12.94	0.00	2.123	11.53	0.00	3.9	96.1	0.0	1.18	0.61	0.66	2.22	3.6	0.003	0.54	0.0	0.06	14.86	0.00	1.946	15.03	0.08	7.8	92.2	0.0	0.36	0.53	0.63	0.71	1.81	20292	1435	1	0	0	0	8505	logfile
✔	6UWL	20923	2022-12-11	2019-11-05	3.62	3.73	—	3.7	0.008	1.16	0.0	0.06	16.05	0.01	2.303	6.24	0.00	7.6	92.2	0.3	-4.71	0.67	0.82	1.71	3.7	0.004	0.77	0.0	0.04	16.09	0.00	2.200	12.65	0.64	6.3	93.7	0.0	-0.08	0.55	0.66	0.81	1.34	3029	402	1	0	1	0	0	logfile
✔	6WYJ	21966	2022-12-11	2020-05-13	3.7	3.74	—	3.8	0.010	0.64	0.0	0.05	12.33	0.00	2.268	5.08	0.00	5.3	94.7	0.0	-4.80	0.59	0.78	4.37	3.8	0.003	0.60	0.0	0.04	14.54	0.00	2.276	5.58	0.00	1.8	98.2	0.0	2.06	0.58	0.63	0.81	1.59	2949	398	1	0	0	0	0	logfile
✔	6WU0	21901	2022-12-11	2020-05-04	3.59	3.92	—	3.9	0.003	0.65	0.0	0.04	13.43	0.00	2.211	10.57	0.00	6.0	94.0	0.0	-1.89	0.56	0.63	0.78	3.9	0.003	0.78	0.0	0.04	15.45	0.01	2.119	12.73	0.61	6.6	93.4	0.0	0.34	0.53	0.54	0.64	0.62	6340	854	1	0	0	0	0	logfile
✘	6V4D	21040	2022-12-18	2019-11-27	3.8	4.13	—	4.1	0.007	0.90	0.0	0.06	13.63	0.01	1.752	21.75	1.35	7.0	93.0	0.0	-3.84	0.49	0.80	2.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3095	422	1	0	0	0	0	logfile
✔	6YNV	10857	2022-12-11	2020-04-14	2.8	3.33	2.74	3.2	0.014	0.90	0.0	0.06	15.71	0.01	2.129	6.07	1.67	6.0	94.0	0.0	-3.24	0.64	0.88	5.38	3.2	0.003	0.55	0.0	0.04	15.77	0.00	2.222	2.81	0.56	5.3	94.7	0.0	0.31	1.43	0.64	0.90	5.07	6724	417	1	0	1	0	3285	logfile
✔	6ZFP	11185	2022-12-16	2020-06-17	3.24	3.95	3.34	3.7	0.006	0.70	0.0	0.05	14.34	0.00	2.198	9.82	0.12	8.4	91.5	0.1	-1.19	0.83	0.83	1.85	3.7	0.002	0.61	0.0	0.04	15.61	0.00	2.206	7.45	0.19	5.9	94.0	0.1	0.30	0.77	0.80	0.77	1.30	29385	3676	1	0	28	0	0	logfile

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