Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7DCQ	30639	2023-09-28	2020-10-26	2.9	3.09	—	3.1	0.006	0.95	1.0	0.06	10.61	0.01	2.378	4.64	0.85	4.1	95.9	0.0	-3.49	0.70	0.81	4.02	3.1	0.003	0.64	0.0	0.04	15.96	0.00	2.330	7.86	2.04	4.5	95.5	0.0	1.12	0.65	0.70	0.83	2.87	5197	653	1	0	0	0	0	logfile
✔	6S7P	10111	2023-09-29	2019-07-05	3.2	3.38	—	3.4	0.009	1.13	0.0	0.08	10.36	0.01	2.085	3.44	0.33	2.8	97.2	0.0	-3.03	0.65	0.83	4.30	3.4	0.003	0.54	0.0	0.04	14.25	0.00	1.994	5.67	0.11	2.0	98.0	0.0	1.00	0.55	0.66	0.85	2.59	9028	1128	1	0	11	0	0	logfile
✘	7QFQ	13947	2023-09-30	2021-12-06	3.6	3.83	3.58	4.0	0.002	0.54	0.0	0.04	12.93	0.00	2.177	8.31	0.00	5.4	94.6	0.0	-0.70	0.65	0.70	1.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10659	1291	1	0	0	0	0	logfile
✔	7RPJ	24616	2023-09-28	2021-08-03	3.2	3.54	3.29	3.6	0.014	1.72	5.0	0.10	13.98	0.01	2.458	3.51	0.98	4.5	95.4	0.1	-1.66	0.57	0.65	2.39	3.6	0.004	0.73	0.0	0.04	14.93	0.00	2.121	9.90	0.25	3.5	96.5	0.0	1.35	1.13	0.66	0.82	1.60	7926	926	1	0	19	0	0	logfile
✔	7T32	25648	2023-09-28	2021-12-06	3.4	3.96	—	3.9	0.006	0.77	0.0	0.04	14.07	0.01	2.313	6.67	0.00	5.1	94.6	0.3	1.86	0.44	0.76	0.75	3.9	0.003	0.68	0.0	0.04	16.41	0.00	2.232	8.43	1.06	4.3	95.4	0.3	2.45	0.95	0.41	0.76	0.65	2861	375	1	0	1	0	0	logfile
✔	8EA0	27970	2023-09-27	2022-08-27	2.56	2.05	2.66	1.9	0.003	0.55	0.0	0.04	12.24	0.00	2.237	8.88	0.00	4.3	95.7	0.0	-0.24	0.72	0.77	2.21	1.9	0.003	0.56	0.0	0.04	15.18	0.00	2.051	8.02	0.84	5.3	94.7	0.0	1.64	0.46	0.74	0.80	3.17	2286	285	1	0	2	0	0	logfile
✔	7RD6	24413	2023-09-28	2021-07-09	3.25	3.44	—	3.4	0.004	0.79	0.0	0.05	14.65	0.00	2.183	9.73	0.00	5.3	94.7	0.0	-1.73	0.56	0.70	2.23	3.4	0.003	0.66	0.0	0.04	16.29	0.00	2.135	14.09	0.12	6.0	94.0	0.0	-1.38	0.42	0.57	0.73	2.17	7396	929	1	0	2	0	0	logfile
✔	7N5G	24189	2023-09-27	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.17	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.003	0.57	0.0	0.04	16.52	0.00	2.220	4.78	2.61	1.4	98.6	0.0	2.92	1.20	0.39	0.80	2.57	2926	371	1	0	1	0	0	logfile
✔	7MSX	23971	2023-09-27	2021-05-12	3.15	3.24	3.04	3.2	0.008	0.62	0.0	0.05	10.30	0.00	2.385	0.81	0.00	1.9	98.1	0.0	0.06	0.77	0.85	3.76	3.2	0.003	0.51	0.0	0.04	14.93	0.00	2.204	4.88	0.25	1.9	98.1	0.0	1.12	1.12	0.78	0.88	3.52	3706	473	1	0	3	0	0	logfile
✔	7V0Q	26948	2023-09-28	2022-05-10	2.5	2.22	2.45	2.2	0.004	0.61	0.0	0.04	18.36	0.00	2.227	3.48	2.15	1.1	98.9	0.0	1.64	0.60	0.89	5.35	2.2	0.003	0.57	0.0	0.04	18.66	0.00	2.150	4.54	2.86	1.2	98.8	0.0	1.61	0.49	0.59	0.89	5.64	5301	658	1	0	0	127	0	logfile
✔	7oP3	13012	2023-09-29	2021-05-28	3.5	3.77	—	3.7	0.004	0.78	0.0	0.05	14.58	0.01	2.278	5.95	0.00	4.8	95.2	0.0	-1.24	0.63	0.81	0.96	3.7	0.003	0.56	0.0	0.04	16.10	0.00	2.172	9.12	0.21	5.1	94.9	0.0	-0.73	0.35	0.61	0.82	0.90	8772	1100	1	0	1	0	0	logfile
✔	7FAS	31505	2023-09-30	2021-07-07	3.6	2.95	—	3.7	0.002	0.52	0.0	0.04	15.63	0.00	2.193	9.10	0.09	4.1	95.9	0.0	0.85	0.72	0.73	0.88	3.7	0.003	0.54	0.0	0.04	17.25	0.00	2.192	9.70	0.18	4.1	95.9	0.0	1.07	0.43	0.73	0.75	0.97	10173	1229	1	0	0	0	0	logfile
✔	7UUZ	26807	2023-09-27	2022-04-29	3.2	3.25	1.51	3.2	0.006	0.57	0.0	0.04	13.36	0.00	2.186	5.97	0.51	5.9	94.1	0.0	1.14	0.62	0.78	2.69	3.2	0.004	0.65	0.0	0.04	15.14	0.00	2.210	10.00	0.25	5.5	94.5	0.0	1.03	1.12	0.60	0.79	2.16	3786	501	1	0	3	0	0	logfile
✔	6KZP	0792	2023-09-29	2019-09-25	3.1	2.67	—	3.0	0.013	1.45	1.0	0.08	14.13	0.01	2.390	10.39	2.44	3.3	96.4	0.3	-4.53	0.59	0.81	3.72	3.1	0.003	0.65	0.0	0.04	16.21	0.00	2.321	5.51	0.33	2.9	97.0	0.1	1.47	0.68	0.59	0.83	2.25	8557	1014	1	0	18	0	0	logfile
✔	8E3S	27871	2023-09-27	2022-08-17	3.1	4.11	3.27	3.9	0.003	0.59	0.0	0.04	13.23	0.00	2.185	10.30	0.00	3.6	96.4	0.0	0.13	0.79	0.75	2.95	3.9	0.003	0.62	0.0	0.04	15.08	0.00	2.182	10.67	0.00	3.8	96.2	0.0	0.07	1.00	0.78	0.75	2.41	4072	503	1	0	1	0	0	logfile
✔	6X2Z	22014	2023-09-27	2020-05-21	3.03	3.18	—	3.2	0.005	0.84	0.0	0.05	15.51	0.01	2.131	6.52	0.00	3.6	96.4	0.0	-5.65	0.44	0.86	2.63	3.2	0.003	0.67	0.0	0.04	16.15	0.00	2.195	9.40	0.28	2.9	97.1	0.0	0.74	0.96	0.44	0.87	2.26	3205	420	1	0	3	0	0	logfile
✔	7MSW	23970	2023-09-29	2021-05-12	3.76	3.93	3.60	3.8	0.009	0.66	0.0	0.05	10.62	0.00	1.933	0.81	0.00	2.5	97.3	0.2	-0.01	0.79	0.80	1.87	3.8	0.003	0.56	0.0	0.04	14.04	0.00	2.077	6.38	0.00	3.2	96.8	0.0	0.24	1.00	0.78	0.81	1.50	9881	635	1	0	3	0	4959	logfile
✔	7N5F	24188	2023-09-27	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.57	0.0	0.04	17.55	0.00	2.307	7.74	1.59	1.6	98.4	0.0	2.51	0.79	0.36	0.78	3.13	3037	386	1	0	1	0	0	logfile
✔	7WHN	32505	2023-09-29	2021-12-31	3.3	2.99	—	3.2	0.009	0.80	0.0	0.05	13.81	0.01	2.147	7.64	0.10	4.5	95.5	0.0	-1.29	0.41	0.83	2.92	3.2	0.002	0.49	0.0	0.04	15.00	0.00	2.281	5.47	0.10	2.7	97.3	0.0	0.94	0.40	0.37	0.82	2.21	9284	1170	1	0	0	0	0	logfile
✔	7XQ0	33387	2023-09-27	2022-05-06	3.0	2.77	3.09	3.2	0.018	1.35	0.0	0.05	13.28	0.01	2.232	7.04	0.86	1.5	98.5	0.0	-6.72	0.49	0.79	4.03	3.2	0.004	1.01	0.0	0.04	14.73	0.00	2.177	8.39	2.02	1.5	98.5	0.0	0.86	1.49	0.44	0.77	2.86	3320	402	1	0	2	0	0	logfile

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