Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6D3R	7793	2021-08-07	2018-04-16	4.3	4.80	4.40	4.5	0.017	1.75	0.0	0.10	9.07	0.01	2.385	0.21	0.00	1.5	98.5	0.0	0.66	0.66	0.76	—	4.5	0.002	0.64	0.0	0.04	12.21	0.00	2.229	7.21	0.00	2.5	97.5	0.0	2.14	1.43	0.68	0.78	—	7610	1127	1	0	2	0	0	logfile
✔	6LLY	0915	2021-08-07	2019-12-24	2.8	2.92	2.72	2.9	0.003	0.57	0.0	0.04	12.24	0.00	2.043	6.26	0.12	3.1	96.9	0.0	-4.03	0.66	0.79	2.62	2.9	0.002	0.56	0.0	0.04	15.61	0.00	2.039	7.92	1.51	2.8	97.2	0.0	0.37	0.52	0.67	0.80	1.77	7774	1006	1	0	2	0	0	logfile
✔	6BHU	7099	2021-08-08	2017-10-31	3.14	3.58	3.62	3.7	0.016	1.28	0.0	0.32	12.37	0.00	1.915	0.69	0.00	3.7	96.3	0.0	-1.76	0.48	0.69	2.60	3.7	0.003	0.85	0.0	0.10	15.34	0.01	1.959	8.62	0.09	2.2	97.8	0.0	1.81	0.75	0.60	0.85	1.59	10273	1208	1	0	127	0	0	logfile
✔	6LN6	0925	2021-08-07	2019-12-28	2.9	3.03	2.87	3.0	0.005	0.61	0.0	0.04	11.78	0.00	2.035	6.53	0.00	2.0	98.0	0.0	-3.94	0.65	0.82	3.55	3.0	0.007	0.72	0.0	0.05	15.36	0.01	2.027	7.36	2.08	2.2	97.8	0.0	0.00	1.33	0.67	0.84	3.32	7836	1010	1	0	4	0	0	logfile
✘	5A7U	3079	2021-08-07	2015-07-10	4.8	3.82	—	4.6	0.020	3.41	3.0	0.25	21.78	0.08	2.651	28.57	25.00	24.0	72.0	4.0	-6.05	-0.01	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✔	6LN7	0926	2021-08-07	2019-12-28	2.8	2.90	2.71	2.9	0.006	0.62	0.0	0.04	11.52	0.00	2.101	5.64	0.00	2.3	97.7	0.0	-3.93	0.70	0.85	3.69	2.9	0.013	1.18	1.0	0.04	16.24	0.00	2.257	7.22	1.27	2.3	97.7	0.0	0.66	0.46	0.70	0.86	2.88	7840	1011	1	0	4	0	0	logfile
✔	5UJ9	8559	2021-08-07	2017-01-17	3.49	3.63	3.85	3.6	0.008	1.14	0.0	0.06	12.10	0.00	2.364	0.67	0.00	4.3	95.7	0.0	-2.72	0.50	0.68	2.42	3.6	0.004	0.73	0.0	0.04	15.94	0.00	2.086	10.08	0.69	3.5	96.5	0.0	1.24	1.25	0.60	0.84	1.54	9857	1170	1	0	125	0	0	logfile
✘	6UoX	20834	2021-08-07	2019-10-15	4.02	4.28	—	4.1	0.010	1.18	1.0	0.08	11.81	0.01	2.461	0.89	0.00	8.2	91.8	0.0	-4.01	0.66	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9138	1161	1	0	14	0	0	logfile
✔	6KZP	0792	2021-08-07	2019-09-25	3.1	2.67	—	3.0	0.020	1.88	1.0	0.28	14.95	0.01	2.390	10.16	2.44	3.3	96.4	0.3	-4.53	0.59	0.81	3.72	3.1	0.003	0.66	0.0	0.04	15.74	0.00	2.183	7.99	0.33	2.5	97.4	0.1	0.05	0.64	0.60	0.83	2.81	8557	1014	1	0	18	0	0	logfile
✔	6UY0	20945	2021-08-07	2019-11-09	3.23	3.39	—	3.4	0.020	1.88	0.0	0.34	13.91	0.00	1.861	1.07	0.00	4.3	95.7	0.0	-2.56	0.47	0.67	1.98	3.4	0.003	0.81	0.0	0.11	16.06	0.00	2.049	7.76	0.09	2.3	97.7	0.0	1.78	1.55	0.69	0.85	1.36	9684	1210	1	0	7	0	0	logfile
✔	6XE6	22144	2021-08-07	2020-06-12	4.53	4.61	—	4.5	0.032	2.45	2.0	0.35	17.28	0.01	1.098	9.99	1.05	11.3	87.4	1.2	-4.98	0.52	0.76	—	4.5	0.003	0.79	0.0	0.04	13.80	0.00	2.194	17.69	0.00	9.7	89.8	0.5	-1.77	1.50	0.52	0.74	—	6530	826	1	0	6	0	0	logfile
✔	6LR0	0956	2021-08-07	2020-01-15	3.5	2.83	—	3.5	0.009	1.28	0.0	0.07	13.02	0.01	2.228	5.41	1.27	11.1	88.8	0.1	-6.63	0.49	0.72	1.90	2.8	0.008	1.12	0.0	0.05	16.79	0.01	2.094	12.69	0.10	8.6	91.4	0.0	-3.98	1.77	0.49	0.72	1.25	9587	1232	1	0	0	0	0	logfile
✔	6ZPG	11338	2021-08-07	2020-07-08	4.6	4.29	—	7.0	0.004	0.99	0.0	0.05	15.64	0.01	2.313	5.51	0.25	5.6	94.4	0.0	-3.85	0.60	0.55	—	6.9	0.003	0.88	0.0	0.05	15.32	0.00	2.174	18.63	0.00	6.7	93.3	0.0	0.38	2.91	0.65	0.64	—	3808	463	1	0	0	0	0	logfile
✔	7JGE	22324	2021-08-09	2020-07-19	4.0	4.23	—	4.2	0.002	0.44	0.0	0.05	13.35	0.00	2.115	13.80	0.00	3.7	96.3	0.0	1.11	0.54	0.54	—	4.2	0.002	0.53	0.0	0.05	15.79	0.00	2.035	16.21	0.00	6.5	93.5	0.0	0.46	1.23	0.60	0.65	—	20315	1437	1	0	0	0	8508	logfile
✔	6C0V	7325	2021-08-07	2018-01-02	3.4	3.67	—	3.9	0.008	1.14	0.0	0.06	12.84	0.00	1.961	0.33	0.00	4.3	95.7	0.0	-2.20	0.42	0.67	2.82	3.8	0.003	0.62	0.0	0.04	16.42	0.00	2.032	7.63	0.43	2.7	97.3	0.0	1.18	1.21	0.59	0.86	2.17	8976	1154	1	0	4	0	0	logfile
✘	6L42	0828	2021-08-08	2019-10-15	3.4	3.83	—	3.8	0.006	2.50	84.0	0.16	15.34	0.01	1.354	32.19	2.82	10.0	89.4	0.7	-5.07	0.80	0.77	1.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14797	1858	1	0	1	0	0	logfile
✔	6UWF	20922	2021-08-07	2019-11-05	3.08	3.26	—	3.3	0.006	0.99	0.0	0.05	18.24	0.01	2.294	2.29	0.00	3.1	96.9	0.0	-3.86	0.70	0.85	2.48	3.3	0.003	0.59	0.0	0.04	14.85	0.00	2.274	6.42	0.31	3.4	96.6	0.0	1.15	1.12	0.72	0.87	2.48	3178	417	1	0	2	0	0	logfile
✔	6V4D	21040	2021-08-07	2019-11-27	3.8	4.13	—	4.1	0.007	0.90	0.0	0.06	13.63	0.01	1.752	21.31	1.35	7.0	93.0	0.0	-3.84	0.49	0.80	2.10	4.1	0.003	0.84	0.0	0.04	16.76	0.01	2.105	12.06	0.34	5.0	95.0	0.0	-0.56	0.64	0.48	0.78	1.52	3095	422	1	0	0	0	0	logfile
✔	7KTW	23032	2021-08-07	2020-11-24	4.27	4.73	—	4.4	0.007	1.12	0.0	0.05	12.46	0.01	2.214	14.28	0.12	5.1	94.9	0.0	-4.61	0.81	0.82	—	4.4	0.003	0.79	0.0	0.04	13.25	0.00	2.148	20.08	0.00	2.8	97.2	0.0	0.66	1.03	0.80	0.80	—	7577	995	1	0	0	0	0	logfile
✔	7KTV	23031	2021-08-07	2020-11-24	4.5	4.83	—	4.5	0.006	1.06	0.0	0.06	12.50	0.01	2.221	17.73	0.12	6.5	93.5	0.0	-5.20	0.80	0.79	—	6.7	0.003	0.78	0.0	0.04	12.93	0.00	2.161	20.21	0.12	3.6	96.4	0.0	-0.29	0.96	0.79	0.76	—	7577	995	1	0	0	0	0	logfile

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