Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UM1	20815	2022-07-04	2019-10-08	3.46	3.57	—	3.5	0.014	1.83	7.0	0.09	15.16	0.01	2.014	9.77	0.84	6.9	92.9	0.2	-4.82	0.69	0.70	2.32	3.5	0.009	1.18	1.0	0.05	16.48	0.01	2.007	19.99	0.00	12.3	87.6	0.1	-3.55	1.16	0.72	0.75	2.16	17134	2208	1	0	8	0	0	logfile
✔	5LY6	4118	2022-07-03	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.81	0.0	0.04	13.96	0.00	2.167	15.68	0.24	10.2	89.3	0.4	-2.62	3.61	0.40	0.77	—	3725	471	1	0	0	0	0	logfile
✔	6HYD	0308	2022-07-03	2018-10-19	3.9	4.01	—	4.0	0.004	0.85	0.0	0.05	9.33	0.01	2.319	2.63	0.24	5.7	94.0	0.3	-6.69	0.74	0.77	2.59	4.0	0.003	0.69	0.0	0.04	14.49	0.00	2.163	5.59	0.24	5.8	94.0	0.2	-1.37	1.74	0.77	0.80	1.55	12168	1543	1	0	31	0	0	logfile
✘	5XJY	6724	2022-07-03	2017-05-04	4.1	4.17	—	4.1	0.010	1.29	0.0	0.07	12.18	0.01	2.200	9.29	1.27	14.1	85.8	0.2	-6.01	0.64	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12785	1901	1	0	12	0	0	logfile
✔	6S7P	10111	2022-07-03	2019-07-05	3.2	3.38	—	3.4	0.009	1.13	0.0	0.08	10.36	0.01	2.085	3.44	0.33	2.8	97.2	0.0	-3.03	0.65	0.83	4.30	3.4	0.003	0.54	0.0	0.04	14.19	0.00	1.992	5.56	0.22	2.0	98.0	0.0	1.12	0.54	0.65	0.85	2.61	9028	1128	1	0	11	0	0	logfile
✔	5UAR	8461	2022-07-03	2016-12-19	3.73	4.36	—	4.4	0.008	1.18	0.0	0.06	13.30	0.00	2.393	0.36	1.06	7.4	92.5	0.1	-3.58	0.58	0.77	1.39	4.3	0.003	0.73	0.0	0.04	16.17	0.00	2.132	11.10	0.48	4.4	95.6	0.0	-0.31	1.53	0.61	0.79	0.88	9489	1184	1	0	2	0	0	logfile
✔	6UES	20755	2022-07-03	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	6JNC	9847	2022-07-03	2019-03-14	3.7	3.76	—	3.8	0.009	0.87	0.0	0.05	14.72	0.01	2.304	3.48	9.09	4.8	95.2	0.0	-5.69	0.46	0.78	1.61	3.8	0.003	0.58	0.0	0.05	15.72	0.00	2.278	6.21	0.59	3.1	96.9	0.0	-1.13	1.79	0.52	0.88	2.22	3294	419	1	0	1	0	0	logfile
✔	6iG9	9664	2022-07-04	2018-09-25	4.6	5.44	4.27	4.3	0.007	1.07	0.0	0.05	9.51	0.01	2.299	9.69	0.73	10.2	89.7	0.2	-3.99	0.69	0.65	—	4.2	0.003	0.66	0.0	0.04	5.13	0.00	2.207	2.18	0.00	8.6	91.4	0.0	0.94	1.55	0.84	0.80	—	17122	3386	1	0	0	0	0	logfile
✔	5UJ9	8559	2022-07-03	2017-01-17	3.49	3.63	3.85	3.6	0.008	1.14	0.0	0.06	12.10	0.00	2.364	0.72	0.00	4.3	95.7	0.0	-2.72	0.50	0.68	2.42	3.6	0.003	0.70	0.0	0.04	15.60	0.00	2.148	10.29	0.69	3.1	96.9	0.0	1.52	0.98	0.59	0.83	1.57	9857	1170	1	0	125	0	0	logfile
✔	6i5A	4413	2022-07-02	2018-11-13	2.3	2.34	1.50	2.3	0.012	1.84	1.0	0.10	14.16	0.01	2.431	6.70	0.74	1.3	97.4	1.3	-0.89	0.26	0.84	3.95	2.3	0.003	0.54	0.0	0.04	16.64	0.00	2.349	2.93	4.44	2.0	98.0	0.0	2.46	1.23	0.30	0.88	4.22	1206	153	1	0	0	0	0	logfile
✔	5YW7	6847	2022-07-03	2017-11-29	4.4	4.45	4.13	4.3	0.004	0.71	1.0	0.05	13.01	0.01	2.246	14.02	6.49	4.3	95.7	0.0	-2.58	0.70	0.79	—	4.3	0.003	0.70	0.0	0.04	13.00	0.00	2.220	12.04	0.00	3.0	97.0	0.0	0.73	1.83	0.71	0.80	—	8944	1140	1	0	2	0	0	logfile
✔	5YWD	6853	2022-07-03	2017-11-29	4.2	4.38	4.11	4.2	0.003	0.73	0.0	0.04	14.12	0.00	2.031	12.08	6.20	4.1	95.9	0.0	-1.54	0.62	0.74	—	4.2	0.003	0.77	0.0	0.04	13.42	0.00	1.924	14.05	0.00	3.8	96.2	0.0	1.24	1.51	0.65	0.77	—	8997	1154	1	0	4	0	0	logfile
✔	5V7V	8642	2022-07-03	2017-03-20	3.9	3.88	—	3.8	0.011	1.19	1.0	0.06	12.64	0.01	1.713	18.52	0.00	11.2	88.7	0.2	-4.92	0.55	0.69	1.61	3.8	0.003	0.65	0.0	0.04	15.80	0.00	1.965	15.13	0.57	9.4	90.6	0.0	-1.01	1.02	0.61	0.78	0.54	9919	613	1	0	9	0	4811	logfile
✔	6SL1	10234	2022-07-04	2019-08-16	3.6	3.62	—	3.5	0.011	0.83	0.0	0.05	14.89	0.01	2.016	13.61	6.72	8.4	91.4	0.2	-4.42	0.72	0.80	2.39	3.5	0.009	1.02	1.0	0.04	16.25	0.01	1.647	9.54	0.44	4.2	95.8	0.0	-0.18	0.79	0.72	0.80	1.79	21041	2652	1	0	2	0	0	logfile
✔	6U2K	20621	2022-07-03	2019-08-20	2.93	3.31	3.29	3.3	0.010	0.98	0.0	0.06	10.03	0.01	2.354	3.34	0.19	9.7	90.3	0.0	-4.70	0.70	0.83	4.65	3.3	0.004	0.72	0.0	0.04	15.07	0.01	2.262	7.00	2.12	8.7	91.3	0.0	-1.93	1.20	0.65	0.81	2.86	4719	604	1	0	4	0	0	logfile
✔	5M5H	4155	2022-07-02	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.94	0.0	0.05	12.39	0.01	2.260	21.55	0.00	7.9	92.1	0.0	-1.85	2.19	0.15	0.14	—	1086	132	1	0	0	0	0	logfile
✔	6LN8	0927	2022-07-03	2019-12-28	3.1	3.26	3.33	3.3	0.003	0.56	0.0	0.04	12.81	0.00	2.051	6.74	0.00	3.0	97.0	0.0	-2.71	0.70	0.80	2.37	3.3	0.003	0.54	0.0	0.04	15.12	0.01	1.935	8.47	0.35	2.6	97.4	0.0	0.31	0.48	0.69	0.81	1.90	7739	1003	1	0	2	0	0	logfile
✔	6UWF	20922	2022-07-02	2019-11-05	3.08	3.26	—	3.3	0.008	1.08	0.0	0.05	16.40	0.01	2.294	2.14	0.00	3.1	96.9	0.0	-3.86	0.70	0.85	2.48	3.3	0.003	0.57	0.0	0.04	15.17	0.00	2.243	6.88	0.00	3.4	96.6	0.0	1.17	0.32	0.67	0.85	2.48	3178	417	1	0	2	0	0	logfile
✔	6UWL	20923	2022-07-03	2019-11-05	3.62	3.73	—	3.7	0.008	1.16	0.0	0.06	16.05	0.01	2.303	6.24	0.00	7.6	92.2	0.3	-4.71	0.67	0.82	1.71	3.7	0.004	0.77	0.0	0.04	16.09	0.00	2.200	12.65	0.64	6.3	93.7	0.0	-0.08	0.55	0.66	0.81	1.34	3029	402	1	0	1	0	0	logfile

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