Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7A8P	11679	2022-05-12	2020-08-30	3.5	3.61	3.44	3.6	0.004	0.52	0.0	0.03	16.07	0.00	2.165	2.86	0.63	2.2	97.8	0.0	0.97	0.73	0.78	1.97	3.6	0.008	1.04	0.0	0.04	17.11	0.01	2.072	9.41	0.25	2.0	98.0	0.0	2.25	0.46	0.74	0.80	1.99	7305	911	1	0	1	0	0	logfile
✔	7LCK	23276	2022-05-12	2021-01-11	3.24	3.84	3.15	3.6	0.008	1.05	4.0	0.07	14.23	0.01	2.160	7.79	1.16	6.7	93.3	0.0	-0.93	0.69	0.79	2.21	3.7	0.003	0.62	0.0	0.04	15.17	0.00	2.228	4.83	0.58	4.1	95.9	0.0	0.64	0.55	0.66	0.79	2.04	3258	390	1	0	1	11	0	logfile
✔	7JGG	22326	2022-05-12	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.5	0.002	0.46	0.0	0.03	12.61	0.00	1.976	80.83	0.00	4.5	95.5	0.0	1.72	1.70	0.67	0.69	—	4210	506	1	0	0	0	28	logfile
✔	6WYK	21967	2022-05-12	2020-05-13	4.0	4.14	—	4.2	0.007	0.77	0.0	0.05	11.98	0.00	2.223	5.97	0.00	3.4	96.6	0.0	-2.28	0.62	0.77	—	4.2	0.005	0.89	0.0	0.05	16.27	0.01	2.217	12.88	0.31	1.9	98.1	0.0	1.71	0.87	0.61	0.77	—	3083	415	1	0	0	0	0	logfile
✔	7DCQ	30639	2022-05-12	2020-10-26	2.9	3.09	—	3.1	0.006	0.95	1.0	0.06	10.61	0.01	2.378	4.74	0.85	4.1	95.9	0.0	-3.49	0.70	0.81	4.02	3.1	0.004	0.68	0.0	0.05	15.67	0.01	2.325	8.62	2.39	4.1	95.9	0.0	0.79	0.63	0.70	0.83	2.88	5197	653	1	0	0	0	0	logfile
✔	6X2Z	22014	2022-05-12	2020-05-21	3.03	3.18	—	3.2	0.005	0.84	0.0	0.05	15.51	0.01	2.131	6.52	0.00	3.6	96.4	0.0	-5.65	0.44	0.86	2.63	3.2	0.003	0.68	0.0	0.04	16.16	0.01	2.184	10.16	0.28	3.1	96.9	0.0	0.65	0.95	0.45	0.87	2.16	3205	420	1	0	3	0	0	logfile
✔	6XJB	22205	2022-05-13	2020-06-23	3.8	4.06	—	3.9	0.002	0.56	0.0	0.04	13.15	0.00	2.165	9.70	0.00	8.6	91.4	0.0	-3.06	0.88	0.82	1.76	3.9	0.005	0.69	0.0	0.04	15.37	0.00	2.075	14.28	0.46	8.2	91.8	0.0	-1.64	1.83	0.88	0.86	2.01	10070	1277	1	0	0	0	0	logfile
✔	6XLY	22252	2022-05-12	2020-06-29	3.1	4.00	3.11	3.5	0.006	0.95	0.0	0.05	15.47	0.01	2.336	4.00	0.97	4.3	95.7	0.0	-5.77	0.86	0.77	1.71	3.6	0.003	0.60	0.0	0.04	15.59	0.00	2.135	11.89	0.19	2.8	97.2	0.0	0.46	0.56	0.88	0.84	1.55	5111	646	1	0	1	0	0	logfile
✘	6YV1	10940	2022-05-12	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.76	1.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2496	328	1	0	0	0	0	logfile
✘	7S9Y	24941	2022-05-12	2021-09-21	3.56	3.89	—	3.9	0.007	0.93	0.0	0.05	13.74	0.01	1.241	10.16	0.00	8.2	91.8	0.0	-1.32	0.69	0.82	3.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7395	901	1	0	3	0	0	logfile
✔	7K1V	22630	2022-05-12	2020-09-08	4.6	4.95	—	4.8	0.008	1.12	0.0	0.06	15.77	0.01	2.159	13.77	0.40	11.0	89.0	0.0	-4.04	0.71	0.71	—	4.8	0.003	0.71	0.0	0.04	14.11	0.01	2.178	18.81	0.00	5.2	94.8	0.0	-1.01	1.44	0.70	0.75	—	4971	626	1	0	0	0	0	logfile
✔	7BWM	30233	2022-05-14	2020-04-15	2.9	2.97	—	2.9	0.005	0.78	0.0	0.05	14.21	0.00	2.048	7.48	7.21	5.8	94.0	0.3	-3.28	0.76	0.85	4.49	2.9	0.002	0.61	0.0	0.04	15.57	0.00	2.132	6.73	2.05	4.9	95.1	0.0	-0.79	1.13	0.77	0.85	3.39	9532	1219	1	0	0	0	0	logfile
✔	7JGE	22324	2022-05-14	2020-07-19	4.0	4.23	—	4.2	0.002	0.44	0.0	0.05	13.35	0.00	2.115	14.14	0.00	3.7	96.3	0.0	1.11	0.54	0.54	—	4.2	0.006	0.61	0.0	0.06	15.49	0.00	2.052	17.72	0.23	7.1	92.9	0.0	0.20	0.63	0.59	0.64	—	20315	1437	1	0	0	0	8508	logfile
✔	7KTT	23029	2022-05-12	2020-11-24	4.17	4.46	—	4.2	0.007	1.04	0.0	0.06	13.23	0.01	2.239	12.66	0.25	5.7	94.3	0.0	-5.41	0.81	0.78	—	4.2	0.003	0.72	0.0	0.04	13.88	0.00	2.185	16.38	0.00	3.1	96.9	0.0	0.28	0.72	0.80	0.76	—	7568	994	1	0	0	0	0	logfile
✔	6YJ5	10816	2022-05-12	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.49	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.003	0.67	0.0	0.05	15.25	0.01	2.265	8.18	0.61	8.2	91.8	0.0	-1.96	0.81	0.51	0.72	2.81	2061	306	1	0	0	0	0	logfile
✔	6ZPG	11338	2022-05-12	2020-07-08	4.6	4.29	—	7.0	0.004	0.99	0.0	0.05	15.64	0.01	2.313	5.51	0.25	5.6	94.4	0.0	-3.85	0.60	0.55	—	6.9	0.003	0.85	0.0	0.05	15.43	0.00	2.151	21.12	0.00	7.4	92.6	0.0	-0.02	2.62	0.63	0.61	—	3808	463	1	0	0	0	0	logfile
✔	7K10	22619	2022-05-13	2020-09-06	3.3	3.44	—	3.4	0.006	0.98	0.0	0.05	15.43	0.01	2.300	4.24	0.37	10.6	89.3	0.1	-5.28	0.72	0.77	2.12	3.4	0.005	0.72	0.0	0.04	16.51	0.01	2.099	7.69	0.18	9.5	90.4	0.1	-1.67	0.41	0.72	0.77	1.66	10037	1259	1	0	0	0	0	logfile
✘	6LQA	0942	2022-05-13	2020-01-13	3.3	3.51	—	3.5	0.008	1.28	0.0	0.07	14.15	0.01	1.369	15.42	6.02	7.8	91.4	0.9	-4.09	0.56	0.77	2.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9387	1151	1	0	10	0	0	logfile
✔	7Li4	23360	2022-05-13	2021-01-26	3.1	3.72	—	3.7	0.004	0.79	0.0	0.05	14.51	0.00	1.774	13.22	0.00	12.2	87.8	0.0	-5.41	0.65	0.80	2.65	3.7	0.004	0.73	0.0	0.04	16.49	0.01	2.142	12.70	0.57	10.4	89.6	0.0	-2.57	0.48	0.58	0.84	2.37	14169	1795	1	1	1	0	0	logfile
✔	7B6E	12053	2022-05-12	2020-12-07	4.5	2.79	—	5.1	0.005	1.03	0.0	0.05	15.04	0.01	2.129	36.28	0.00	10.9	89.1	0.0	-3.88	0.62	0.66	—	5.1	0.004	0.97	0.0	0.05	15.19	0.01	2.191	25.33	0.00	10.6	89.4	0.0	-1.71	0.86	0.61	0.66	—	2205	269	1	0	0	0	0	logfile

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