Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YXY	14369	2023-04-23	2022-02-16	3.1	3.25	3.02	3.1	0.003	0.59	0.0	0.04	13.93	0.00	2.219	10.79	0.00	4.9	95.0	0.1	0.42	0.64	0.78	1.95	3.1	0.003	0.64	0.0	0.04	15.70	0.00	2.180	10.72	0.46	5.2	94.8	0.1	0.75	0.51	0.64	0.81	1.83	14031	1739	1	0	0	0	0	logfile
✔	7UVK	26812	2023-04-21	2022-05-02	3.28	3.22	3.00	3.3	0.005	0.74	0.0	0.05	13.60	0.00	2.168	11.01	0.00	9.0	91.0	0.0	-3.16	0.57	0.78	2.35	3.2	0.003	0.68	0.0	0.04	16.31	0.00	2.075	11.69	0.61	9.4	90.6	0.0	-2.27	1.11	0.71	0.87	2.85	10350	1295	1	0	0	0	0	logfile
✔	7URM	26714	2023-04-19	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	23.67	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.16	0.0	0.05	22.87	0.01	1.983	29.94	0.00	0.0	0.0	0.0	—	1.70	0.15	0.54	—	1905	0	1	90	0	0	0	logfile
✔	5W81	8782	2023-04-21	2017-06-21	3.37	3.79	—	3.9	0.008	1.26	1.0	0.06	13.30	0.00	1.940	1.47	0.00	5.1	94.9	0.0	-3.11	0.45	0.60	0.57	3.8	0.003	0.72	0.0	0.04	16.92	0.00	1.899	8.26	0.20	3.2	96.7	0.1	0.14	1.56	0.57	0.81	1.38	9393	1173	1	0	4	0	0	logfile
✔	7URi	26713	2023-04-19	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	25.77	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.008	1.44	0.0	0.07	23.84	0.01	2.072	23.68	0.00	0.0	0.0	0.0	—	2.06	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	7Z1H	14446	2023-04-23	2022-02-24	3.12	4.01	—	3.5	0.016	0.97	2.0	0.04	12.32	0.00	1.830	20.25	0.18	10.8	88.7	0.5	-1.31	0.79	0.79	1.28	3.5	0.016	0.94	2.0	0.04	14.23	0.00	1.692	20.59	0.00	11.7	87.9	0.4	-1.08	0.41	0.79	0.77	1.28	15032	1848	1	0	0	0	0	logfile
✔	6C0V	7325	2023-04-21	2018-01-02	3.4	3.67	—	3.9	0.008	1.14	0.0	0.06	12.84	0.00	1.961	0.33	0.00	4.3	95.7	0.0	-2.20	0.42	0.67	2.82	3.8	0.003	0.63	0.0	0.04	16.30	0.00	1.939	7.86	0.96	2.8	97.2	0.0	1.00	1.45	0.58	0.86	2.33	8976	1154	1	0	4	0	0	logfile
✔	7Mi6	23841	2023-04-29	2021-04-16	3.9	4.23	3.91	4.0	0.012	1.49	3.0	0.08	13.51	0.01	2.027	6.46	1.32	5.3	94.3	0.4	-2.30	0.84	0.82	1.35	4.0	0.003	0.75	0.0	0.04	16.29	0.00	1.991	14.50	0.14	3.1	96.8	0.0	0.58	1.19	0.85	0.83	1.41	19653	2419	1	0	4	0	0	logfile
✔	7YZ4	14387	2023-04-25	2022-02-18	3.84	3.32	4.13	3.2	0.004	0.78	0.0	0.05	11.95	0.01	2.253	1.46	0.92	3.6	96.4	0.0	-2.13	0.65	0.63	1.40	3.1	0.003	0.59	0.0	0.04	14.32	0.00	1.985	7.22	0.28	3.6	96.4	0.0	0.61	1.23	0.66	0.63	0.97	19805	1234	1	0	0	0	9953	logfile
✔	7UiU	26553	2023-04-19	2022-03-29	2.8	3.11	2.72	3.1	0.004	0.62	0.0	0.04	13.60	0.00	2.356	3.35	0.00	4.8	95.2	0.0	-2.09	0.28	0.82	1.99	3.1	0.004	0.96	0.0	0.04	17.04	0.00	2.228	11.74	1.67	4.8	95.2	0.0	-2.17	1.37	0.28	0.89	2.33	607	85	1	0	0	0	0	logfile
✔	8E2F	27834	2023-04-22	2022-08-15	2.47	2.75	2.45	2.7	0.003	0.62	0.0	0.04	16.35	0.00	2.040	6.66	1.58	3.0	97.0	0.0	1.05	0.58	0.82	4.21	2.7	0.004	0.57	0.0	0.04	16.59	0.00	1.823	6.66	1.73	2.7	97.3	0.0	1.68	0.37	0.61	0.84	3.95	12305	771	1	0	0	0	6207	logfile
✔	7Mi3	23838	2023-04-21	2021-04-16	3.5	3.72	3.45	3.6	0.012	1.47	0.0	0.08	12.84	0.01	1.978	5.17	1.94	6.8	92.8	0.3	-1.80	0.85	0.86	3.53	3.6	0.003	0.69	0.0	0.04	14.87	0.00	1.987	10.40	0.55	4.0	96.0	0.0	0.70	2.29	0.85	0.87	2.77	9682	1192	1	0	4	0	0	logfile
✔	7NXF	12638	2023-04-20	2021-03-18	3.1	4.01	3.17	3.6	0.006	0.82	0.0	0.04	14.20	0.01	2.281	9.15	0.00	7.9	92.1	0.0	-0.71	0.60	0.80	1.58	3.7	0.005	0.67	0.0	0.04	15.64	0.00	1.905	9.22	0.44	7.3	92.7	0.0	0.44	1.96	0.59	0.86	1.35	6405	829	1	0	3	0	0	logfile
✔	7P05	13144	2023-04-25	2021-06-29	3.13	3.16	—	3.3	0.008	0.87	0.0	0.04	13.66	0.01	1.997	7.44	0.09	4.1	95.9	0.0	0.57	0.66	0.82	3.58	3.3	0.004	0.54	0.0	0.04	14.62	0.00	1.976	5.82	0.00	4.0	96.0	0.0	1.12	0.78	0.67	0.84	3.24	21576	1353	1	0	3	0	10675	logfile
✘	5A7U	3079	2023-04-19	2015-07-10	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✔	6LN8	0927	2023-04-20	2019-12-28	3.1	3.26	3.33	3.3	0.003	0.56	0.0	0.04	12.81	0.00	2.051	6.74	0.00	3.0	97.0	0.0	-2.71	0.70	0.80	2.37	3.3	0.003	0.54	0.0	0.04	15.08	0.00	1.381	9.56	0.12	3.1	96.9	0.0	0.11	0.48	0.69	0.82	1.70	7739	1003	1	0	2	0	0	logfile
✔	7B54	12018	2023-04-23	2020-12-03	3.1	3.96	—	3.6	0.005	0.77	0.0	0.04	14.53	0.00	2.081	15.09	0.19	12.5	87.1	0.4	-1.25	0.82	0.83	1.99	3.6	0.004	0.68	0.0	0.04	15.78	0.00	2.106	13.07	0.19	11.9	87.7	0.4	-0.71	0.32	0.81	0.82	1.57	14148	1732	1	0	0	0	0	logfile
✘	7N6B	24206	2023-04-20	2021-06-08	2.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5942	757	1	0	2	0	0	logfile
✔	3J9D	6239	2023-04-20	2015-01-09	3.3	2.70	—	3.4	0.027	2.04	0.0	0.08	20.57	0.01	2.034	23.66	24.92	8.2	89.6	2.2	-3.64	0.81	0.89	2.90	3.3	0.022	0.83	0.0	0.04	17.52	0.00	2.197	15.77	0.60	7.4	91.9	0.7	-1.61	2.37	0.75	0.84	2.85	6086	746	1	0	1	0	0	logfile
✔	6oUC	20202	2023-04-20	2019-05-04	2.8	3.00	—	3.0	0.008	1.15	1.0	0.08	9.03	0.01	2.131	6.96	0.00	3.5	96.5	0.0	-2.32	0.62	0.88	5.44	3.0	0.003	0.57	0.0	0.05	14.54	0.01	2.233	4.42	0.96	2.7	97.3	0.0	-0.27	1.18	0.64	0.90	3.37	3899	483	1	0	1	124	0	logfile

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