Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6V6C	21068	2023-04-20	2019-12-04	4.5	4.50	—	4.4	0.003	0.55	0.0	0.04	13.78	0.00	2.226	7.10	0.00	5.1	94.9	0.0	-4.56	0.42	0.82	—	4.4	0.003	0.67	0.0	0.04	14.26	0.00	2.222	6.48	0.23	4.7	95.3	0.0	-0.11	2.03	0.42	0.81	—	4007	497	1	0	0	0	0	logfile
✔	5YW7	6847	2023-04-21	2017-11-29	4.4	4.45	4.13	4.3	0.004	0.71	1.0	0.05	13.01	0.01	2.246	14.02	6.49	4.3	95.7	0.0	-2.58	0.70	0.79	—	4.3	0.003	0.71	0.0	0.04	13.10	0.00	2.227	12.04	0.00	3.8	96.2	0.0	0.76	1.83	0.71	0.80	—	8944	1140	1	0	2	0	0	logfile
✔	6PLZ	20381	2023-04-23	2019-07-01	3.0	3.68	—	3.5	0.006	0.97	0.0	0.06	8.93	0.01	2.338	4.40	0.00	5.3	94.7	0.0	-5.25	0.60	0.85	4.29	3.5	0.003	0.67	0.0	0.04	15.36	0.00	2.102	9.19	2.85	3.1	96.9	0.0	-0.67	0.70	0.56	0.84	3.32	14210	1725	15	0	20	0	0	logfile
✔	5WRG	6679	2023-04-23	2016-12-01	4.3	4.45	—	4.3	0.007	1.40	0.0	0.07	12.06	0.01	2.191	9.91	0.53	18.0	81.4	0.7	-5.05	0.66	0.69	—	4.3	0.004	1.00	0.0	0.05	12.31	0.00	2.019	20.07	0.00	18.0	81.8	0.1	-3.25	1.52	0.68	0.76	—	16317	2208	3	0	0	0	0	logfile
✔	7NBX	12262	2023-04-26	2021-01-28	4.8	5.30	4.72	4.9	0.008	1.04	0.0	0.05	15.90	0.01	1.950	12.59	0.00	12.3	87.6	0.1	-4.49	0.76	0.82	—	4.9	0.004	0.64	0.0	0.04	14.15	0.00	1.865	13.30	0.00	9.7	90.3	0.0	-2.01	0.71	0.76	0.81	—	22637	1475	5	0	0	0	11129	logfile
✔	7E3B	30978	2023-04-20	2021-02-08	4.2	4.05	—	4.0	0.006	0.81	0.0	0.05	13.28	0.00	2.241	16.63	0.00	8.2	91.8	0.0	-2.04	0.74	0.84	—	4.0	0.003	0.70	0.0	0.05	13.19	0.00	2.247	15.70	0.00	5.8	94.2	0.0	-1.19	0.41	0.74	0.83	—	3299	421	4	0	1	0	0	logfile
✔	7D45	30570	2023-04-28	2020-09-22	3.8	3.90	—	3.9	0.009	0.92	0.0	0.05	15.23	0.00	2.082	19.92	0.35	16.6	83.1	0.2	-4.81	0.79	0.80	1.51	3.8	0.004	0.69	0.0	0.05	16.54	0.00	2.083	14.87	0.39	8.2	91.7	0.1	-1.74	1.57	0.78	0.78	1.20	27529	3659	11	0	0	0	0	logfile
✔	6DUZ	8913	2023-04-27	2018-06-22	3.6	3.88	—	3.8	0.006	0.97	0.0	0.05	11.01	0.01	1.677	4.59	4.35	3.2	96.8	0.0	-4.32	0.76	0.82	2.31	3.8	0.003	0.64	0.0	0.04	16.45	0.00	2.126	7.59	1.01	2.7	97.3	0.0	-0.08	1.86	0.66	0.85	1.70	72744	9072	48	0	0	0	0	logfile
✔	7ZH0	14716	2023-04-20	2022-04-05	3.2	3.63	3.07	3.5	0.004	0.72	0.0	0.04	13.97	0.01	2.191	14.27	0.24	6.0	94.0	0.0	1.08	0.65	0.75	3.58	3.5	0.003	0.68	0.0	0.04	16.34	0.00	2.220	14.02	0.73	5.5	94.3	0.2	1.04	0.51	0.67	0.77	2.84	3869	495	1	0	0	0	0	logfile
✔	7R8C	24315	2023-04-20	2021-06-26	3.7	4.19	—	4.1	0.002	0.49	0.0	0.04	12.82	0.00	2.073	6.73	0.21	4.8	95.2	0.0	-1.63	0.68	0.85	1.76	4.1	0.002	0.66	0.0	0.04	14.79	0.00	2.156	8.76	0.21	5.1	94.9	0.0	1.17	1.05	0.71	0.87	1.83	8538	1090	2	0	0	0	0	logfile
✔	7oCF	12806	2023-04-24	2021-04-26	3.6	3.48	—	3.5	0.018	0.95	0.0	0.11	13.48	0.00	2.067	5.05	0.00	4.2	95.8	0.0	0.18	0.68	0.78	3.00	3.5	0.004	0.62	0.0	0.04	15.00	0.00	2.035	6.85	0.54	3.3	96.7	0.0	0.90	1.24	0.69	0.82	2.80	17088	2298	15	0	30	0	0	logfile
✔	7WTG	32785	2023-04-20	2022-02-04	3.8	3.93	—	3.9	0.006	1.20	0.0	0.07	14.44	0.01	2.297	4.61	0.00	9.1	90.9	0.0	-2.94	0.67	0.73	2.60	3.9	0.003	0.77	0.0	0.05	15.85	0.01	2.100	12.76	0.56	9.3	90.5	0.2	-2.41	0.66	0.70	0.76	1.80	3318	425	3	0	0	0	0	logfile
✔	6DVW	8919	2023-04-25	2018-06-25	4.3	4.35	—	4.3	0.008	1.19	0.0	0.06	11.88	0.01	1.840	5.62	0.87	15.9	83.7	0.4	-5.79	0.68	0.80	—	4.3	0.004	0.80	0.0	0.04	13.27	0.00	2.102	12.09	0.00	14.6	85.1	0.3	-1.90	0.87	0.67	0.80	—	21004	2576	4	0	0	0	0	logfile
✔	7R19	14235	2023-04-27	2022-02-02	3.3	3.69	3.53	3.6	0.004	0.59	0.0	0.05	11.43	0.01	2.179	4.01	0.18	2.1	97.9	0.0	0.42	0.82	0.83	2.64	3.6	0.003	0.57	0.0	0.04	13.78	0.00	2.246	5.51	0.14	3.0	97.0	0.0	0.12	0.53	0.85	0.86	2.52	25388	3178	10	0	38	0	0	logfile
✔	6PXD	20518	2023-04-23	2019-07-25	2.9	2.99	—	3.3	0.007	1.05	0.0	0.06	10.53	0.01	2.154	11.21	1.32	4.7	95.3	0.0	-3.03	0.64	0.82	4.45	3.2	0.004	0.70	0.0	0.05	15.20	0.00	2.229	8.99	2.12	4.4	95.6	0.0	0.28	0.67	0.65	0.84	3.72	13899	1700	13	0	13	1	0	logfile
✔	5VMS	8712	2023-04-23	2017-04-28	3.7	4.22	—	4.2	0.007	1.47	12.0	0.07	12.69	0.00	2.234	6.34	0.00	3.2	96.8	0.0	2.06	0.56	0.76	1.80	4.2	0.004	0.77	0.0	0.04	16.46	0.00	2.165	14.25	1.10	2.8	97.2	0.0	2.84	0.86	0.60	0.80	1.41	14916	1936	8	0	12	0	0	logfile
✔	6N38	9341	2023-04-27	2018-11-14	3.7	3.82	—	3.8	0.013	1.29	0.0	0.08	10.00	0.01	2.216	1.17	0.31	2.7	97.2	0.1	0.10	0.78	0.79	2.54	3.7	0.002	0.65	0.0	0.04	14.39	0.00	2.192	6.42	0.16	2.2	97.8	0.0	0.89	0.83	0.81	0.83	2.23	24456	3098	11	0	39	0	0	logfile
✔	7VLY	32031	2023-04-22	2021-10-05	2.45	2.52	—	2.5	0.002	0.61	0.0	0.04	15.83	0.01	2.232	6.18	2.49	4.0	96.0	0.0	1.19	0.72	0.85	2.83	2.5	0.003	0.62	0.0	0.04	16.33	0.01	2.227	6.77	2.34	5.2	94.8	0.0	1.75	0.90	0.74	0.88	2.76	13347	1773	18	0	3	30	0	logfile
✔	6X3T	22032	2023-04-24	2020-05-21	2.55	2.18	2.60	2.5	0.005	0.66	0.0	0.05	13.21	0.00	2.171	6.00	2.28	3.0	97.0	0.0	-0.78	0.73	0.82	4.33	2.5	0.004	0.62	0.0	0.04	15.86	0.00	2.144	6.89	3.03	2.7	97.3	0.0	0.90	0.38	0.77	0.85	4.10	17415	2121	18	0	27	0	0	logfile
✔	7K43	22659	2023-04-29	2020-09-14	2.6	2.81	2.75	2.8	0.018	1.50	12.0	0.11	10.83	0.01	2.456	0.84	0.09	2.1	97.9	0.1	0.34	0.74	0.78	4.38	2.8	0.003	0.62	0.0	0.04	15.22	0.00	2.147	7.08	1.91	2.4	97.6	0.0	0.56	1.21	0.72	0.82	3.68	30390	3783	33	0	78	0	0	logfile

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