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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7JMC | 22391 | 2022-05-17 | 2020-07-31 | 2.5 | 2.76 | 2.68 | 2.7 | 0.010 | 1.29 | 0.0 | 0.06 | 13.90 | 0.01 | 2.249 | 2.77 | 0.57 | 1.6 | 98.4 | 0.0 | 3.40 | 0.62 | 0.82 | 4.76 | 2.7 | 0.003 | 0.48 | 0.0 | 0.04 | 13.42 | 0.00 | 2.126 | 5.15 | 1.71 | 1.1 | 98.9 | 0.0 | 3.44 | 0.68 | 0.65 | 0.86 | 4.05 | 39828 | 2304 | 36 | 0 | 144 | 168 | 18576 | logfile |
✔ | 6KPK | 0749 | 2022-05-13 | 2019-08-15 | 2.3 | 3.44 | — | 3.0 | 0.006 | 0.71 | 0.0 | 0.06 | 12.55 | 0.00 | 2.127 | 4.93 | 0.37 | 5.5 | 94.5 | 0.0 | -3.66 | 0.84 | 0.88 | 4.21 | 3.2 | 0.003 | 0.72 | 1.0 | 0.13 | 14.45 | 0.00 | 2.010 | 5.11 | 0.62 | 3.6 | 96.4 | 0.0 | 1.15 | 0.76 | 0.84 | 0.89 | 4.11 | 62209 | 3936 | 24 | 0 | 24 | 0 | 31225 | logfile |
✔ | 6KQo | 0754 | 2022-05-13 | 2019-08-18 | 2.52 | 3.75 | — | 3.2 | 0.019 | 1.14 | 0.0 | 0.07 | 15.24 | 0.00 | 1.883 | 10.69 | 0.03 | 9.4 | 90.6 | 0.0 | -5.07 | 0.87 | 0.85 | 3.52 | 3.3 | 0.005 | 0.77 | 1.0 | 0.12 | 15.95 | 0.00 | 1.796 | 9.28 | 0.84 | 3.7 | 96.3 | 0.0 | 0.25 | 1.66 | 0.85 | 0.85 | 3.16 | 63373 | 3936 | 24 | 0 | 48 | 0 | 31225 | logfile |
✔ | 6KPH | 0746 | 2022-05-13 | 2019-08-15 | 2.41 | 3.45 | — | 3.2 | 0.014 | 1.01 | 0.0 | 0.15 | 14.01 | 0.00 | 1.838 | 8.27 | 0.00 | 8.5 | 91.5 | 0.0 | -4.25 | 0.81 | 0.85 | 4.19 | 3.2 | 0.004 | 0.73 | 0.0 | 0.15 | 15.62 | 0.00 | 1.777 | 7.89 | 1.06 | 4.1 | 95.9 | 0.0 | 0.19 | 0.81 | 0.80 | 0.86 | 4.21 | 62832 | 3936 | 24 | 0 | 48 | 0 | 31212 | logfile |
✔ | 6KPE | 0743 | 2022-05-13 | 2019-08-15 | 2.83 | 4.04 | — | 3.7 | 0.009 | 0.82 | 0.0 | 0.14 | 13.07 | 0.00 | 2.040 | 13.53 | 0.00 | 10.4 | 89.6 | 0.0 | -5.24 | 0.83 | 0.84 | 3.18 | 3.5 | 0.004 | 0.83 | 0.0 | 0.16 | 15.55 | 0.00 | 2.043 | 10.01 | 1.34 | 6.0 | 94.0 | 0.0 | -0.31 | 1.70 | 0.83 | 0.85 | 3.26 | 62184 | 3936 | 24 | 0 | 12 | 0 | 31212 | logfile |
✔ | 7JLW | 22382 | 2022-05-17 | 2020-07-30 | 2.5 | 2.52 | 2.49 | 2.5 | 0.011 | 1.39 | 0.0 | 0.07 | 14.27 | 0.00 | 2.377 | 4.26 | 1.14 | 1.1 | 98.9 | 0.0 | 0.51 | 0.62 | 0.82 | 4.64 | 2.5 | 0.004 | 0.51 | 0.0 | 0.04 | 15.02 | 0.00 | 2.005 | 5.66 | 1.42 | 0.7 | 99.3 | 0.0 | 2.85 | 0.97 | 0.67 | 0.86 | 4.30 | 40284 | 2316 | 36 | 0 | 132 | 204 | 18720 | logfile |
✔ | 7JM9 | 22390 | 2022-05-18 | 2020-07-31 | 2.5 | 2.71 | 2.65 | 2.7 | 0.009 | 1.47 | 0.0 | 0.07 | 13.53 | 0.00 | 2.291 | 3.08 | 0.56 | 1.1 | 98.9 | 0.0 | 0.10 | 0.62 | 0.82 | 5.25 | 2.7 | 0.002 | 0.46 | 0.0 | 0.04 | 13.55 | 0.00 | 2.085 | 6.38 | 1.27 | 1.4 | 98.6 | 0.0 | 3.63 | 0.72 | 0.64 | 0.85 | 4.54 | 41136 | 2328 | 36 | 0 | 168 | 156 | 18876 | logfile |
✘ | 6KPJ | 0748 | 2022-05-13 | 2019-08-15 | 2.56 | 3.82 | — | 3.3 | 0.014 | 0.91 | 0.0 | 0.06 | 13.08 | 0.00 | 1.218 | 8.38 | 0.00 | 6.7 | 93.3 | 0.0 | -4.33 | 0.85 | 0.86 | 3.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62845 | 3936 | 24 | 0 | 48 | 0 | 31225 | logfile |
✔ | 6KPi | 0747 | 2022-05-13 | 2019-08-15 | 2.43 | 3.50 | — | 3.0 | 0.008 | 0.67 | 0.0 | 0.06 | 11.99 | 0.00 | 1.974 | 5.19 | 0.00 | 7.1 | 92.9 | 0.0 | -4.39 | 0.85 | 0.88 | 4.58 | 3.0 | 0.005 | 0.78 | 2.0 | 0.13 | 14.39 | 0.00 | 1.984 | 5.77 | 0.62 | 3.5 | 96.5 | 0.0 | 1.23 | 0.72 | 0.85 | 0.90 | 4.27 | 62209 | 3936 | 24 | 0 | 24 | 0 | 31225 | logfile |
✔ | 6KPA | 0742 | 2022-05-13 | 2019-08-15 | 2.75 | 3.85 | — | 3.3 | 0.015 | 0.92 | 0.0 | 0.06 | 14.43 | 0.00 | 1.899 | 6.66 | 0.00 | 6.7 | 93.3 | 0.0 | -4.52 | 0.87 | 0.88 | 3.48 | 3.3 | 0.005 | 0.80 | 1.0 | 0.13 | 16.02 | 0.00 | 1.851 | 5.41 | 0.19 | 3.7 | 96.3 | 0.0 | 0.59 | 0.83 | 0.87 | 0.90 | 3.36 | 62845 | 3936 | 24 | 0 | 48 | 0 | 31225 | logfile |
✔ | 6KQ4 | 0750 | 2022-05-13 | 2019-08-16 | 2.3 | 3.29 | — | 3.0 | 0.007 | 0.65 | 0.0 | 0.06 | 13.31 | 0.00 | 2.167 | 3.58 | 0.37 | 4.3 | 95.7 | 0.0 | -3.29 | 0.85 | 0.87 | 4.30 | 2.9 | 0.004 | 0.72 | 1.0 | 0.13 | 15.63 | 0.00 | 1.994 | 4.44 | 0.47 | 3.8 | 96.2 | 0.0 | 1.27 | 0.77 | 0.84 | 0.89 | 4.24 | 62206 | 3936 | 24 | 0 | 24 | 0 | 31222 | logfile |
✔ | 6KQ8 | 0751 | 2022-05-13 | 2019-08-16 | 3.0 | 4.05 | — | 3.7 | 0.004 | 0.68 | 3.0 | 0.13 | 12.41 | 0.00 | 2.049 | 6.27 | 0.00 | 4.3 | 95.7 | 0.0 | -4.72 | 0.87 | 0.86 | 3.55 | 3.7 | 0.005 | 0.76 | 2.0 | 0.13 | 13.89 | 0.00 | 2.051 | 7.78 | 0.34 | 5.2 | 94.8 | 0.0 | 0.07 | 1.38 | 0.87 | 0.87 | 3.92 | 62197 | 3936 | 24 | 0 | 12 | 0 | 31225 | logfile |
✔ | 6KoU | 0740 | 2022-05-13 | 2019-08-13 | 2.43 | 3.57 | — | 3.0 | 0.004 | 0.67 | 1.0 | 0.13 | 11.88 | 0.00 | 2.006 | 4.07 | 0.00 | 3.0 | 97.0 | 0.0 | -4.12 | 0.85 | 0.88 | 4.03 | 3.1 | 0.004 | 0.74 | 2.0 | 0.13 | 13.97 | 0.00 | 2.071 | 6.52 | 0.28 | 4.0 | 96.0 | 0.0 | 0.82 | 1.07 | 0.85 | 0.89 | 3.83 | 62209 | 3936 | 24 | 0 | 24 | 0 | 31225 | logfile |
✔ | 6XKL | 22221 | 2022-05-15 | 2020-06-26 | 3.21 | 2.34 | 3.27 | 3.3 | 0.008 | 1.01 | 0.0 | 0.07 | 14.28 | 0.01 | 2.034 | 6.61 | 3.62 | 4.1 | 95.8 | 0.1 | -0.34 | 0.73 | 0.76 | 3.00 | 3.3 | 0.006 | 0.82 | 0.0 | 0.05 | 15.37 | 0.01 | 2.180 | 5.81 | 0.21 | 2.9 | 97.1 | 0.0 | 0.25 | 0.47 | 0.75 | 0.78 | 2.64 | 22895 | 2920 | 17 | 0 | 50 | 0 | 0 | logfile |
✔ | 6MRD | 9196 | 2022-05-16 | 2018-10-12 | 3.82 | 4.44 | — | 3.9 | 0.008 | 0.88 | 0.0 | 0.07 | 10.50 | 0.00 | 1.941 | 43.72 | 0.00 | 9.7 | 90.1 | 0.2 | -2.91 | 0.90 | 0.86 | 1.24 | 3.9 | 0.006 | 0.74 | 1.0 | 0.07 | 11.48 | 0.00 | 1.717 | 64.75 | 0.17 | 10.0 | 89.9 | 0.1 | -0.02 | 0.53 | 0.90 | 0.87 | 1.11 | 34517 | 4396 | 21 | 0 | 14 | 0 | 1477 | logfile |
✔ | 6MRC | 9195 | 2022-05-14 | 2018-10-12 | 3.08 | 3.40 | — | 3.4 | 0.007 | 0.81 | 0.0 | 0.07 | 10.51 | 0.00 | 1.988 | 27.58 | 0.18 | 7.5 | 92.3 | 0.2 | -2.93 | 0.81 | 0.83 | 3.65 | 3.3 | 0.002 | 0.59 | 0.0 | 0.07 | 13.88 | 0.00 | 1.893 | 36.12 | 0.18 | 6.2 | 93.7 | 0.1 | 0.55 | 0.64 | 0.81 | 0.85 | 3.21 | 69132 | 8792 | 56 | 0 | 28 | 98 | 2954 | logfile |
✔ | 6XCM | 22127 | 2022-05-15 | 2020-06-08 | 3.42 | 3.84 | — | 3.6 | 0.008 | 0.73 | 0.0 | 0.05 | 15.64 | 0.00 | 2.068 | 15.56 | 8.41 | 11.6 | 88.3 | 0.1 | -4.31 | 0.79 | 0.85 | 2.08 | 3.6 | 0.004 | 0.65 | 0.0 | 0.04 | 15.76 | 0.00 | 2.095 | 11.77 | 0.46 | 6.7 | 93.2 | 0.0 | -1.66 | 0.48 | 0.77 | 0.86 | 1.93 | 26772 | 3390 | 23 | 0 | 59 | 0 | 0 | logfile |
✔ | 6XCN | 22128 | 2022-05-16 | 2020-06-08 | 3.66 | 3.89 | — | 3.7 | 0.011 | 0.90 | 0.0 | 0.05 | 14.05 | 0.00 | 2.117 | 15.11 | 1.08 | 10.2 | 89.8 | 0.0 | -4.10 | 0.78 | 0.87 | 2.22 | 3.7 | 0.005 | 0.76 | 0.0 | 0.04 | 15.08 | 0.00 | 2.053 | 9.90 | 0.07 | 5.3 | 94.7 | 0.0 | -1.13 | 0.99 | 0.77 | 0.86 | 1.63 | 28662 | 3636 | 27 | 0 | 60 | 0 | 0 | logfile |
✔ | 6WNR | 21855 | 2022-05-17 | 2020-04-23 | 3.3 | 3.61 | — | 3.4 | 0.005 | 0.96 | 1.0 | 0.06 | 14.34 | 0.01 | 1.869 | 2.24 | 1.44 | 2.8 | 97.2 | 0.0 | -1.29 | 0.77 | 0.85 | 2.75 | 3.4 | 0.003 | 0.72 | 0.0 | 0.04 | 15.71 | 0.00 | 1.932 | 9.30 | 0.16 | 3.1 | 96.9 | 0.0 | 0.76 | 0.79 | 0.79 | 0.88 | 2.10 | 36934 | 4851 | 28 | 0 | 12 | 0 | 0 | logfile |
✔ | 6VoG | 21263 | 2022-05-15 | 2020-01-30 | 4.35 | 4.16 | — | 4.1 | 0.007 | 1.08 | 0.0 | 0.06 | 16.25 | 0.01 | 2.242 | 15.25 | 0.49 | 8.8 | 91.1 | 0.1 | -3.94 | 0.75 | 0.76 | — | 4.1 | 0.003 | 0.80 | 0.0 | 0.05 | 14.83 | 0.01 | 2.079 | 22.20 | 0.00 | 6.9 | 93.1 | 0.0 | -1.45 | 0.88 | 0.77 | 0.78 | — | 27137 | 3562 | 14 | 0 | 5 | 0 | 0 | logfile |