Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6P25	20236	2022-07-03	2019-05-21	3.2	3.30	—	3.3	0.006	1.11	0.0	0.06	12.00	0.01	1.329	8.91	0.40	6.7	93.3	0.0	-4.48	0.59	0.77	3.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11739	1424	5	0	6	0	0	logfile
✔	6oHW	20070	2022-07-06	2019-04-07	2.9	3.07	—	3.0	0.026	1.77	9.0	0.11	10.01	0.01	2.085	0.74	0.39	1.9	98.1	0.0	0.44	0.80	0.85	5.00	3.0	0.004	0.61	0.0	0.05	14.43	0.00	2.103	6.42	2.22	2.8	97.2	0.0	0.44	0.58	0.78	0.85	3.82	28917	3525	9	0	96	186	0	logfile
✔	5XLR	6732	2022-07-05	2017-05-11	3.8	3.93	—	3.8	0.008	1.17	0.0	0.06	9.81	0.01	2.139	9.28	0.38	14.6	85.2	0.3	-4.45	0.72	0.64	1.76	3.8	0.003	0.81	0.0	0.05	14.16	0.01	2.021	14.98	0.23	11.0	89.0	0.0	-2.01	2.06	0.79	0.78	1.36	23901	3066	3	0	0	0	0	logfile
✔	6CMo	7517	2022-07-03	2018-03-05	4.5	4.24	—	4.2	0.004	0.99	0.0	0.06	10.43	0.01	2.181	4.01	0.08	1.3	98.7	0.0	-1.97	0.59	0.68	—	4.2	0.005	0.81	0.0	0.04	12.81	0.00	2.072	10.70	0.08	3.8	96.2	0.0	-0.66	0.77	0.59	0.67	—	11834	1516	7	0	2	0	0	logfile
✔	6o0H	0567	2022-07-06	2019-02-16	3.67	3.72	3.76	3.7	0.009	1.16	0.0	0.06	10.65	0.01	2.262	7.17	0.35	4.8	95.2	0.0	-4.11	0.79	0.78	2.27	3.7	0.008	0.93	0.0	0.05	14.99	0.01	1.773	17.16	0.32	4.2	95.8	0.0	-1.88	0.79	0.81	0.81	1.88	32012	4092	8	0	8	0	0	logfile
✘	5VKQ	8702	2022-07-07	2017-04-22	3.55	3.85	3.58	3.6	0.005	1.13	0.0	0.05	10.22	0.01	1.216	11.54	0.72	8.9	90.8	0.3	-5.28	0.83	0.77	1.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	41900	5996	8	0	32	0	0	logfile
✔	5o4U	3746	2022-07-05	2017-05-31	4.2	4.27	4.23	4.3	0.007	1.26	2.0	0.08	11.28	0.01	0.586	16.09	1.75	17.3	82.7	0.0	-4.67	0.39	0.70	—	4.2	0.008	1.10	0.0	0.06	12.95	0.01	1.930	22.29	0.04	18.1	81.9	0.0	-3.26	1.33	0.46	0.76	—	24528	3312	16	0	0	0	0	logfile
✔	6NYY	0552	2022-07-04	2019-02-12	3.0	2.29	2.99	3.1	0.007	0.90	0.0	0.05	10.08	0.01	0.952	5.97	0.05	5.9	94.1	0.0	-5.40	0.70	0.66	3.17	3.1	0.007	0.87	0.0	0.04	16.28	0.01	1.926	11.25	1.83	4.6	95.4	0.0	-0.97	1.35	0.76	0.74	2.67	19226	2894	16	0	13	0	0	logfile
✔	6Q07	20545	2022-07-06	2019-08-01	2.9	3.09	—	3.0	0.025	2.00	19.0	0.15	11.39	0.01	2.256	1.83	0.91	1.6	98.3	0.1	0.58	0.77	0.80	4.66	3.0	0.003	0.59	3.0	0.04	14.93	0.00	2.216	6.73	2.42	2.2	97.8	0.0	0.27	1.25	0.78	0.85	4.21	28737	3477	9	0	135	60	0	logfile
✔	5ZX5	6975	2022-07-05	2018-05-18	3.28	3.43	—	3.4	0.016	1.41	0.0	0.08	11.53	0.01	2.270	11.04	2.12	4.0	95.8	0.2	-4.97	0.69	0.81	3.74	3.4	0.003	0.70	0.0	0.04	15.54	0.01	2.250	7.72	0.12	4.1	95.9	0.0	0.30	0.68	0.70	0.83	2.13	25440	3256	8	0	12	0	0	logfile
✔	6P7W	20271	2022-07-05	2019-06-06	4.1	4.34	4.07	4.1	0.007	0.94	0.0	0.05	15.40	0.01	1.961	6.90	0.07	11.1	88.6	0.3	-3.77	0.84	0.77	—	4.1	0.004	0.63	0.0	0.04	14.47	0.00	1.851	12.10	0.00	10.1	89.9	0.0	-0.07	0.82	0.84	0.77	—	25800	1542	5	0	0	0	12936	logfile
✔	5AEY	2850	2022-07-03	2015-01-12	4.3	4.01	—	4.0	0.011	1.71	35.0	0.11	21.88	0.01	2.197	7.21	18.45	8.7	88.5	2.8	-3.27	0.64	0.81	—	3.9	0.003	0.76	0.0	0.04	15.48	0.00	2.110	13.31	0.07	9.1	90.6	0.3	-1.26	2.83	0.63	0.76	—	12675	1590	10	0	5	0	0	logfile
✔	5A22	6337	2022-07-06	2015-05-06	3.8	4.20	—	4.2	0.009	1.49	0.0	0.06	15.75	0.01	2.014	14.23	5.57	13.9	84.2	2.0	-5.08	0.72	0.82	1.68	4.1	0.011	1.07	1.0	0.04	16.85	0.01	1.842	19.64	0.89	13.6	85.3	1.1	-1.79	2.67	0.69	0.76	1.46	32187	2002	1	0	2	0	16110	logfile
✔	3JC6	6534	2022-07-05	2015-11-24	3.7	4.01	—	3.9	0.009	1.53	0.0	0.06	12.91	0.01	1.203	39.77	0.87	9.8	89.0	1.1	-3.87	0.79	0.76	1.43	3.9	0.004	1.16	0.0	0.05	16.98	0.01	2.018	20.74	0.79	9.7	89.5	0.8	-1.58	1.58	0.82	0.77	1.09	23732	2953	12	0	1	0	0	logfile
✔	6P7V	20270	2022-07-05	2019-06-06	4.0	4.41	3.91	4.0	0.011	1.21	0.0	0.06	15.86	0.01	2.076	6.65	0.08	9.8	90.0	0.2	-3.19	0.84	0.78	—	4.0	0.003	0.61	0.0	0.04	16.44	0.00	1.954	12.57	0.54	8.5	91.5	0.1	0.66	0.83	0.84	0.78	—	23152	1384	4	0	0	0	11620	logfile
✔	6RTB	4996	2022-07-03	2019-05-22	3.46	3.57	—	3.5	0.009	1.23	0.0	0.07	15.08	0.01	2.122	6.27	2.61	18.9	80.9	0.2	-4.64	0.62	0.79	4.22	3.5	0.006	0.85	0.0	0.05	16.16	0.00	2.105	17.65	0.65	22.1	77.9	0.0	-4.34	0.89	0.63	0.81	4.18	4681	699	10	0	0	0	0	logfile
✔	6HiS	0228	2022-07-04	2018-08-30	4.5	4.60	—	4.5	0.010	1.55	0.0	0.08	11.89	0.01	2.228	16.80	0.29	4.9	95.1	0.0	-2.60	0.76	0.77	—	4.5	0.003	0.74	0.0	0.05	12.92	0.00	2.077	14.41	0.00	5.6	94.4	0.0	-0.50	1.36	0.77	0.78	—	16240	1935	10	0	40	0	0	logfile
✔	5VYA	8746	2022-07-05	2017-05-24	4.0	4.09	—	4.0	0.024	1.94	1.0	0.10	12.34	0.01	1.095	11.00	0.77	4.6	94.1	1.4	-1.01	0.73	0.65	—	4.0	0.004	0.84	0.0	0.05	17.47	0.00	2.103	20.74	0.77	6.4	93.1	0.5	-0.66	2.32	0.80	0.78	—	27691	3474	13	0	40	0	0	logfile
✘	6AUi	7006	2022-07-07	2017-09-01	3.3	3.75	—	3.7	0.007	1.07	0.0	0.05	9.47	0.01	1.243	6.42	0.00	5.3	94.7	0.0	-3.97	0.81	0.81	3.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36306	4470	18	0	30	36	0	logfile
✔	5VMS	8712	2022-07-04	2017-04-28	3.7	4.22	—	4.2	0.007	1.47	12.0	0.07	12.69	0.00	2.234	6.34	0.00	3.2	96.8	0.0	2.06	0.56	0.76	1.80	4.2	0.004	0.80	0.0	0.04	16.53	0.00	2.163	13.23	0.76	2.5	97.5	0.0	2.76	0.87	0.60	0.80	1.35	14916	1936	8	0	12	0	0	logfile

• ← previous
• Page 3 of 392
• next →