The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3J9P | 6267 | 2022-12-13 | 2015-02-14 | 4.24 | 2.59 | — | 4.1 | 0.009 | 1.84 | 4.0 | 0.07 | 17.68 | 0.01 | 2.113 | 26.59 | 4.64 | 10.2 | 88.2 | 1.6 | -3.58 | 0.73 | 0.78 | — | 4.2 | 0.003 | 1.08 | 0.0 | 0.04 | 13.94 | 0.00 | 2.147 | 16.50 | 0.00 | 8.3 | 91.0 | 0.7 | -1.68 | 1.18 | 0.73 | 0.80 | — | 16952 | 2240 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CVM | 7770 | 2022-12-19 | 2018-03-28 | 1.9 | 2.49 | 1.94 | 2.3 | 0.012 | 0.92 | 0.0 | 0.07 | 10.17 | 0.01 | 2.053 | 4.13 | 0.00 | 2.7 | 97.3 | 0.0 | -1.16 | 0.81 | 0.91 | 7.66 | 2.3 | 0.005 | 0.63 | 0.0 | 0.05 | 13.84 | 0.00 | 1.973 | 7.13 | 0.69 | 2.2 | 97.8 | 0.0 | 0.70 | 0.37 | 0.85 | 0.94 | 6.94 | 37062 | 4084 | 12 | 0 | 20 | 4194 | 0 | logfile |
✔ | 6ACD | 9589 | 2022-12-15 | 2018-07-26 | 3.9 | 4.22 | — | 4.0 | 0.007 | 1.04 | 0.0 | 0.06 | 9.72 | 0.01 | 1.629 | 8.00 | 0.25 | 14.3 | 85.1 | 0.5 | -4.47 | 0.79 | 0.77 | 1.25 | 4.0 | 0.004 | 0.76 | 0.0 | 0.05 | 13.69 | 0.00 | 2.076 | 17.71 | 0.47 | 13.6 | 86.2 | 0.3 | -2.56 | 1.59 | 0.79 | 0.78 | 1.13 | 24845 | 3187 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LKH | 4068 | 2022-12-19 | 2016-07-22 | 3.46 | 5.27 | — | 11.0 | 0.018 | 2.37 | 65.0 | 0.12 | 12.66 | 0.02 | 2.255 | 87.25 | 1.96 | 3.4 | 95.2 | 1.4 | -0.27 | 0.38 | 0.17 | -0.03 | 8.8 | 0.003 | 0.81 | 0.0 | 0.04 | 15.64 | 0.00 | 2.120 | 25.20 | 0.34 | 6.3 | 93.7 | 0.0 | -0.80 | 2.12 | 0.50 | 0.56 | 0.41 | 37345 | 4740 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 5ZGB | 6929 | 2022-12-19 | 2018-03-08 | 3.63 | 3.79 | — | 3.7 | 0.012 | 1.47 | 0.0 | 0.07 | 18.52 | 0.02 | 1.175 | 15.16 | 0.43 | 12.9 | 86.8 | 0.3 | -5.22 | 0.73 | 0.74 | 2.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35011 | 3102 | 31 | 0 | 215 | 0 | 0 | logfile |
✔ | 5LKi | 4068 | 2022-12-11 | 2016-07-22 | 3.46 | 3.72 | — | 3.5 | 0.013 | 1.24 | 5.0 | 0.06 | 10.71 | 0.01 | 0.579 | 39.63 | 0.18 | 7.7 | 91.7 | 0.6 | -4.39 | 0.65 | 0.79 | 2.37 | 3.5 | 0.003 | 0.82 | 0.0 | 0.04 | 15.10 | 0.00 | 2.086 | 15.11 | 0.39 | 6.9 | 92.7 | 0.4 | 0.29 | 0.82 | 0.63 | 0.80 | 1.58 | 55415 | 7135 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N7H | 0356 | 2022-12-14 | 2018-11-27 | 3.6 | 3.75 | — | 3.7 | 0.009 | 1.31 | 0.0 | 0.07 | 12.99 | 0.01 | 2.008 | 8.78 | 1.35 | 12.3 | 87.1 | 0.6 | -4.46 | 0.64 | 0.76 | 2.32 | 3.7 | 0.003 | 0.77 | 0.0 | 0.04 | 16.32 | 0.00 | 2.044 | 11.42 | 0.34 | 9.6 | 90.3 | 0.0 | -0.36 | 1.44 | 0.66 | 0.78 | 1.93 | 17242 | 2153 | 8 | 0 | 23 | 0 | 0 | logfile |
✔ | 6RQJ | 4983 | 2022-12-13 | 2019-05-15 | 3.5 | 4.14 | 3.49 | 3.7 | 0.006 | 0.74 | 0.0 | 0.11 | 14.34 | 0.00 | 2.041 | 11.21 | 0.06 | 6.9 | 92.9 | 0.2 | -4.28 | 0.84 | 0.75 | 2.30 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 15.40 | 0.00 | 2.182 | 10.44 | 0.24 | 5.2 | 94.8 | 0.0 | -0.60 | 0.50 | 0.89 | 0.85 | 2.02 | 14971 | 1899 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6QG0 | 4543 | 2022-12-19 | 2019-01-10 | 4.15 | 4.29 | 4.10 | 4.3 | 0.009 | 1.40 | 20.0 | 0.08 | 18.07 | 0.00 | 0.775 | 5.36 | 5.91 | 10.0 | 87.6 | 2.4 | -3.14 | 0.56 | 0.68 | — | 4.2 | 0.003 | 0.79 | 0.0 | 0.05 | 15.15 | 0.00 | 2.084 | 17.23 | 0.05 | 9.4 | 90.1 | 0.5 | -1.82 | 1.72 | 0.57 | 0.63 | — | 36980 | 4742 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MRU | 9213 | 2022-12-12 | 2018-10-15 | 3.2 | 3.31 | — | 3.3 | 0.005 | 0.73 | 0.0 | 0.04 | 10.16 | 0.01 | 2.297 | 2.27 | 0.82 | 1.4 | 98.6 | 0.0 | -1.59 | 0.72 | 0.83 | 3.34 | 3.3 | 0.002 | 0.46 | 0.0 | 0.03 | 13.26 | 0.00 | 2.192 | 3.53 | 0.00 | 0.6 | 99.4 | 0.0 | 5.66 | 3.08 | 0.75 | 0.86 | 1.81 | 29107 | 3705 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PYH | 20524 | 2022-12-13 | 2019-07-29 | 4.3 | 4.52 | — | 4.3 | 0.016 | 1.05 | 0.0 | 0.05 | 14.64 | 0.01 | 2.079 | 28.82 | 0.55 | 18.2 | 81.6 | 0.2 | -5.21 | 0.84 | 0.83 | — | 4.3 | 0.003 | 0.66 | 0.0 | 0.04 | 13.76 | 0.00 | 2.006 | 12.96 | 0.07 | 8.1 | 91.9 | 0.0 | -2.26 | 0.65 | 0.84 | 0.82 | — | 13187 | 1648 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MRT | 9212 | 2022-12-11 | 2018-10-15 | 2.8 | 2.93 | — | 2.9 | 0.008 | 0.90 | 0.0 | 0.05 | 10.67 | 0.01 | 2.260 | 1.61 | 0.82 | 1.1 | 98.9 | 0.0 | -1.27 | 0.70 | 0.84 | 3.77 | 2.9 | 0.003 | 0.46 | 0.0 | 0.03 | 15.43 | 0.00 | 2.226 | 3.14 | 1.29 | 0.5 | 99.5 | 0.0 | 5.71 | 3.08 | 0.73 | 0.86 | 2.07 | 26868 | 3420 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 6Q2R | 20578 | 2022-12-18 | 2019-08-08 | 4.3 | 4.92 | — | 4.6 | 0.004 | 0.81 | 0.0 | 0.05 | 8.41 | 0.01 | 1.384 | 4.93 | 0.00 | 5.4 | 94.6 | 0.0 | -3.85 | 0.68 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30392 | 3800 | 16 | 0 | 40 | 0 | 0 | logfile |
✔ | 6H05 | 0108 | 2022-12-21 | 2018-07-06 | 2.9 | 3.15 | — | 3.5 | 0.016 | 1.09 | 0.0 | 0.07 | 9.74 | 0.01 | 0.426 | 17.81 | 0.00 | 8.5 | 91.5 | 0.0 | -5.50 | 0.36 | 0.13 | 0.50 | 3.1 | 0.003 | 0.86 | 0.0 | 0.04 | 15.56 | 0.00 | 2.134 | 15.94 | 2.28 | 4.3 | 95.7 | 0.0 | -1.34 | 1.63 | 0.58 | 0.47 | 0.65 | 44544 | 5664 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CoZ | 7545 | 2022-12-11 | 2018-03-13 | 3.36 | 4.78 | — | 4.7 | 0.009 | 1.71 | 0.0 | 0.07 | 5.63 | 0.01 | 2.541 | 0.00 | 0.00 | 3.2 | 96.2 | 0.6 | -2.49 | 0.78 | 0.68 | — | 4.4 | 0.003 | 0.82 | 0.0 | 0.04 | 4.96 | 0.00 | 2.368 | 4.42 | 0.00 | 8.3 | 91.7 | 0.0 | -1.63 | 1.58 | 0.82 | 0.77 | — | 1586 | 320 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oHY | 20074 | 2022-12-13 | 2019-04-08 | 4.1 | 4.28 | 4.05 | 4.2 | 0.006 | 0.98 | 0.0 | 0.06 | 11.07 | 0.01 | 2.288 | 4.35 | 0.40 | 10.5 | 88.9 | 0.5 | -3.30 | 0.79 | 0.79 | — | 4.2 | 0.005 | 0.74 | 0.0 | 0.05 | 12.74 | 0.00 | 2.124 | 11.08 | 0.07 | 11.0 | 88.9 | 0.1 | -2.10 | 1.23 | 0.80 | 0.82 | — | 15192 | 1701 | 54 | 0 | 126 | 0 | 0 | logfile |
✔ | 6E1H | 8955 | 2022-12-13 | 2018-07-09 | 3.5 | 3.83 | — | 3.8 | 0.008 | 1.18 | 0.0 | 0.06 | 12.25 | 0.01 | 1.962 | 5.86 | 1.76 | 9.9 | 90.1 | 0.0 | -3.67 | 0.60 | 0.76 | 2.52 | 3.9 | 0.003 | 0.84 | 0.0 | 0.04 | 15.82 | 0.00 | 1.821 | 15.59 | 0.57 | 8.2 | 91.8 | 0.0 | -0.47 | 1.35 | 0.59 | 0.76 | 1.27 | 16667 | 2120 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6MRW | 9214 | 2022-12-12 | 2018-10-15 | 4.3 | 4.76 | — | 4.3 | 0.006 | 0.98 | 0.0 | 0.04 | 10.35 | 0.01 | 2.080 | 4.61 | 0.41 | 2.1 | 97.9 | 0.0 | -0.19 | 0.82 | 0.84 | — | 4.3 | 0.002 | 0.48 | 0.0 | 0.03 | 11.74 | 0.00 | 2.080 | 6.81 | 0.00 | 1.8 | 98.2 | 0.0 | 6.05 | 1.27 | 0.83 | 0.86 | — | 31346 | 3990 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N1R | 9318 | 2022-12-21 | 2018-11-10 | 4.0 | 4.12 | — | 4.0 | 0.006 | 0.89 | 0.0 | 0.05 | 8.46 | 0.01 | 0.296 | 17.83 | 0.00 | 8.7 | 91.3 | 0.0 | -2.90 | 0.80 | 0.71 | — | 4.0 | 0.004 | 0.76 | 0.0 | 0.05 | 12.80 | 0.00 | 2.118 | 17.37 | 0.48 | 7.1 | 92.9 | 0.0 | 0.31 | 1.68 | 0.83 | 0.78 | — | 46044 | 5796 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MHG | 9114 | 2022-12-14 | 2018-09-17 | 3.57 | 3.83 | — | 3.7 | 0.021 | 1.81 | 0.0 | 0.09 | 9.72 | 0.01 | 2.175 | 2.01 | 0.24 | 4.0 | 95.6 | 0.4 | 0.49 | 0.75 | 0.86 | 3.50 | 3.6 | 0.005 | 0.76 | 0.0 | 0.04 | 14.22 | 0.00 | 2.077 | 11.69 | 0.43 | 7.1 | 92.8 | 0.1 | -0.09 | 1.34 | 0.74 | 0.86 | 3.19 | 19931 | 2642 | 23 | 0 | 0 | 0 | 0 | logfile |