Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JMC	22391	2022-05-17	2020-07-31	2.5	2.76	2.68	2.7	0.010	1.29	0.0	0.06	13.90	0.01	2.249	2.77	0.57	1.6	98.4	0.0	3.40	0.62	0.82	4.76	2.7	0.003	0.48	0.0	0.04	13.42	0.00	2.126	5.15	1.71	1.1	98.9	0.0	3.44	0.68	0.65	0.86	4.05	39828	2304	36	0	144	168	18576	logfile
✔	6KPK	0749	2022-05-13	2019-08-15	2.3	3.44	—	3.0	0.006	0.71	0.0	0.06	12.55	0.00	2.127	4.93	0.37	5.5	94.5	0.0	-3.66	0.84	0.88	4.21	3.2	0.003	0.72	1.0	0.13	14.45	0.00	2.010	5.11	0.62	3.6	96.4	0.0	1.15	0.76	0.84	0.89	4.11	62209	3936	24	0	24	0	31225	logfile
✔	6KQo	0754	2022-05-13	2019-08-18	2.52	3.75	—	3.2	0.019	1.14	0.0	0.07	15.24	0.00	1.883	10.69	0.03	9.4	90.6	0.0	-5.07	0.87	0.85	3.52	3.3	0.005	0.77	1.0	0.12	15.95	0.00	1.796	9.28	0.84	3.7	96.3	0.0	0.25	1.66	0.85	0.85	3.16	63373	3936	24	0	48	0	31225	logfile
✔	6KPH	0746	2022-05-13	2019-08-15	2.41	3.45	—	3.2	0.014	1.01	0.0	0.15	14.01	0.00	1.838	8.27	0.00	8.5	91.5	0.0	-4.25	0.81	0.85	4.19	3.2	0.004	0.73	0.0	0.15	15.62	0.00	1.777	7.89	1.06	4.1	95.9	0.0	0.19	0.81	0.80	0.86	4.21	62832	3936	24	0	48	0	31212	logfile
✔	6KPE	0743	2022-05-13	2019-08-15	2.83	4.04	—	3.7	0.009	0.82	0.0	0.14	13.07	0.00	2.040	13.53	0.00	10.4	89.6	0.0	-5.24	0.83	0.84	3.18	3.5	0.004	0.83	0.0	0.16	15.55	0.00	2.043	10.01	1.34	6.0	94.0	0.0	-0.31	1.70	0.83	0.85	3.26	62184	3936	24	0	12	0	31212	logfile
✔	7JLW	22382	2022-05-17	2020-07-30	2.5	2.52	2.49	2.5	0.011	1.39	0.0	0.07	14.27	0.00	2.377	4.26	1.14	1.1	98.9	0.0	0.51	0.62	0.82	4.64	2.5	0.004	0.51	0.0	0.04	15.02	0.00	2.005	5.66	1.42	0.7	99.3	0.0	2.85	0.97	0.67	0.86	4.30	40284	2316	36	0	132	204	18720	logfile
✔	7JM9	22390	2022-05-18	2020-07-31	2.5	2.71	2.65	2.7	0.009	1.47	0.0	0.07	13.53	0.00	2.291	3.08	0.56	1.1	98.9	0.0	0.10	0.62	0.82	5.25	2.7	0.002	0.46	0.0	0.04	13.55	0.00	2.085	6.38	1.27	1.4	98.6	0.0	3.63	0.72	0.64	0.85	4.54	41136	2328	36	0	168	156	18876	logfile
✘	6KPJ	0748	2022-05-13	2019-08-15	2.56	3.82	—	3.3	0.014	0.91	0.0	0.06	13.08	0.00	1.218	8.38	0.00	6.7	93.3	0.0	-4.33	0.85	0.86	3.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62845	3936	24	0	48	0	31225	logfile
✔	6KPi	0747	2022-05-13	2019-08-15	2.43	3.50	—	3.0	0.008	0.67	0.0	0.06	11.99	0.00	1.974	5.19	0.00	7.1	92.9	0.0	-4.39	0.85	0.88	4.58	3.0	0.005	0.78	2.0	0.13	14.39	0.00	1.984	5.77	0.62	3.5	96.5	0.0	1.23	0.72	0.85	0.90	4.27	62209	3936	24	0	24	0	31225	logfile
✔	6KPA	0742	2022-05-13	2019-08-15	2.75	3.85	—	3.3	0.015	0.92	0.0	0.06	14.43	0.00	1.899	6.66	0.00	6.7	93.3	0.0	-4.52	0.87	0.88	3.48	3.3	0.005	0.80	1.0	0.13	16.02	0.00	1.851	5.41	0.19	3.7	96.3	0.0	0.59	0.83	0.87	0.90	3.36	62845	3936	24	0	48	0	31225	logfile
✔	6KQ4	0750	2022-05-13	2019-08-16	2.3	3.29	—	3.0	0.007	0.65	0.0	0.06	13.31	0.00	2.167	3.58	0.37	4.3	95.7	0.0	-3.29	0.85	0.87	4.30	2.9	0.004	0.72	1.0	0.13	15.63	0.00	1.994	4.44	0.47	3.8	96.2	0.0	1.27	0.77	0.84	0.89	4.24	62206	3936	24	0	24	0	31222	logfile
✔	6KQ8	0751	2022-05-13	2019-08-16	3.0	4.05	—	3.7	0.004	0.68	3.0	0.13	12.41	0.00	2.049	6.27	0.00	4.3	95.7	0.0	-4.72	0.87	0.86	3.55	3.7	0.005	0.76	2.0	0.13	13.89	0.00	2.051	7.78	0.34	5.2	94.8	0.0	0.07	1.38	0.87	0.87	3.92	62197	3936	24	0	12	0	31225	logfile
✔	6KoU	0740	2022-05-13	2019-08-13	2.43	3.57	—	3.0	0.004	0.67	1.0	0.13	11.88	0.00	2.006	4.07	0.00	3.0	97.0	0.0	-4.12	0.85	0.88	4.03	3.1	0.004	0.74	2.0	0.13	13.97	0.00	2.071	6.52	0.28	4.0	96.0	0.0	0.82	1.07	0.85	0.89	3.83	62209	3936	24	0	24	0	31225	logfile
✔	6XKL	22221	2022-05-15	2020-06-26	3.21	2.34	3.27	3.3	0.008	1.01	0.0	0.07	14.28	0.01	2.034	6.61	3.62	4.1	95.8	0.1	-0.34	0.73	0.76	3.00	3.3	0.006	0.82	0.0	0.05	15.37	0.01	2.180	5.81	0.21	2.9	97.1	0.0	0.25	0.47	0.75	0.78	2.64	22895	2920	17	0	50	0	0	logfile
✔	6MRD	9196	2022-05-16	2018-10-12	3.82	4.44	—	3.9	0.008	0.88	0.0	0.07	10.50	0.00	1.941	43.72	0.00	9.7	90.1	0.2	-2.91	0.90	0.86	1.24	3.9	0.006	0.74	1.0	0.07	11.48	0.00	1.717	64.75	0.17	10.0	89.9	0.1	-0.02	0.53	0.90	0.87	1.11	34517	4396	21	0	14	0	1477	logfile
✔	6MRC	9195	2022-05-14	2018-10-12	3.08	3.40	—	3.4	0.007	0.81	0.0	0.07	10.51	0.00	1.988	27.58	0.18	7.5	92.3	0.2	-2.93	0.81	0.83	3.65	3.3	0.002	0.59	0.0	0.07	13.88	0.00	1.893	36.12	0.18	6.2	93.7	0.1	0.55	0.64	0.81	0.85	3.21	69132	8792	56	0	28	98	2954	logfile
✔	6XCM	22127	2022-05-15	2020-06-08	3.42	3.84	—	3.6	0.008	0.73	0.0	0.05	15.64	0.00	2.068	15.56	8.41	11.6	88.3	0.1	-4.31	0.79	0.85	2.08	3.6	0.004	0.65	0.0	0.04	15.76	0.00	2.095	11.77	0.46	6.7	93.2	0.0	-1.66	0.48	0.77	0.86	1.93	26772	3390	23	0	59	0	0	logfile
✔	6XCN	22128	2022-05-16	2020-06-08	3.66	3.89	—	3.7	0.011	0.90	0.0	0.05	14.05	0.00	2.117	15.11	1.08	10.2	89.8	0.0	-4.10	0.78	0.87	2.22	3.7	0.005	0.76	0.0	0.04	15.08	0.00	2.053	9.90	0.07	5.3	94.7	0.0	-1.13	0.99	0.77	0.86	1.63	28662	3636	27	0	60	0	0	logfile
✔	6WNR	21855	2022-05-17	2020-04-23	3.3	3.61	—	3.4	0.005	0.96	1.0	0.06	14.34	0.01	1.869	2.24	1.44	2.8	97.2	0.0	-1.29	0.77	0.85	2.75	3.4	0.003	0.72	0.0	0.04	15.71	0.00	1.932	9.30	0.16	3.1	96.9	0.0	0.76	0.79	0.79	0.88	2.10	36934	4851	28	0	12	0	0	logfile
✔	6VoG	21263	2022-05-15	2020-01-30	4.35	4.16	—	4.1	0.007	1.08	0.0	0.06	16.25	0.01	2.242	15.25	0.49	8.8	91.1	0.1	-3.94	0.75	0.76	—	4.1	0.003	0.80	0.0	0.05	14.83	0.01	2.079	22.20	0.00	6.9	93.1	0.0	-1.45	0.88	0.77	0.78	—	27137	3562	14	0	5	0	0	logfile

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