Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6MAT	9063	2021-08-09	2018-08-28	4.5	4.61	—	4.5	0.012	1.81	9.0	0.11	18.41	0.01	2.397	2.81	2.79	6.4	91.6	2.0	-1.24	0.77	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27030	3448	13	0	38	0	0	logfile
✔	6S3K	10092	2021-08-07	2019-06-25	3.7	4.09	3.85	4.1	0.008	1.12	0.0	0.06	15.38	0.01	2.276	5.87	0.62	10.7	89.3	0.0	-4.54	0.57	0.75	0.73	4.1	0.004	0.74	0.0	0.04	16.94	0.01	2.279	10.26	0.31	8.1	91.9	0.0	0.53	3.50	0.56	0.72	0.73	8902	1146	4	0	6	0	0	logfile
✔	5K10	8192	2021-08-08	2016-05-17	3.8	4.74	—	3.8	0.009	0.93	0.0	0.06	12.22	0.02	2.138	32.87	0.30	6.9	92.6	0.5	-4.07	0.80	0.57	0.98	3.8	0.004	0.84	0.0	0.04	15.95	0.01	2.184	27.63	0.60	5.0	94.8	0.3	-0.92	1.89	0.92	0.86	0.91	6338	794	4	0	2	0	0	logfile
✔	5L93	4015	2021-08-10	2016-06-09	3.9	4.05	—	4.1	0.004	0.94	0.0	0.04	8.71	0.00	1.566	6.96	0.00	9.8	90.2	0.0	-2.97	0.53	0.75	1.23	4.0	0.007	0.95	0.0	0.04	17.04	0.01	2.161	12.13	0.68	7.1	92.8	0.2	0.78	1.72	0.56	0.81	1.16	31212	4032	18	0	0	0	0	logfile
✔	5K11	8193	2021-08-08	2016-05-17	3.8	4.50	—	3.8	0.012	1.23	0.0	0.06	12.12	0.01	2.061	28.74	0.30	6.1	93.4	0.5	-4.89	0.80	0.59	1.53	3.8	0.004	0.88	0.0	0.05	15.12	0.00	2.190	19.53	0.00	3.6	96.3	0.1	0.10	1.44	0.90	0.84	1.19	6338	794	4	0	2	0	0	logfile
✔	6E10	8951	2021-08-08	2018-07-08	4.16	4.27	—	4.2	0.008	1.16	11.0	0.07	10.73	0.01	1.063	10.25	1.07	5.8	93.8	0.4	-4.45	0.79	0.72	—	4.1	0.003	0.69	0.0	0.04	12.92	0.00	2.116	14.22	0.02	5.9	94.0	0.1	-0.47	1.52	0.82	0.79	—	57352	6823	34	0	359	0	0	logfile
✔	5TJ5	8409	2021-08-08	2016-10-03	3.9	4.19	—	4.1	0.010	1.29	0.0	0.05	9.13	0.01	1.040	27.20	0.12	14.4	85.2	0.4	-6.37	0.62	0.69	1.87	4.2	0.011	1.22	1.0	0.05	12.90	0.01	1.794	20.65	0.24	6.3	93.5	0.2	0.63	1.78	0.63	0.74	0.65	14976	2102	14	0	365	0	0	logfile
✔	6N1H	8902	2021-08-08	2018-11-08	3.17	3.22	—	3.2	0.006	1.13	0.0	0.06	12.23	0.01	0.657	30.92	3.97	7.4	92.6	0.0	-7.22	0.39	0.46	0.05	3.2	0.003	0.69	0.0	0.04	17.79	0.01	2.180	9.31	3.04	6.6	93.4	0.0	1.00	4.70	0.63	0.84	1.76	10991	1328	16	0	0	0	0	logfile
✔	6N9Y	0383	2021-08-07	2018-12-04	4.0	3.80	—	3.7	0.008	1.10	0.0	0.05	10.30	0.01	2.229	4.80	0.42	9.1	90.9	0.0	-4.98	0.38	0.73	—	3.7	0.003	0.71	0.0	0.04	15.77	0.00	2.172	12.94	0.21	7.5	92.5	0.0	-1.13	1.78	0.40	0.79	—	4527	552	1	0	0	0	0	logfile
✘	5WPV	8883	2021-08-08	2017-08-07	3.59	3.68	—	3.7	0.006	0.90	0.0	0.05	10.97	0.01	2.329	2.66	0.18	3.7	96.3	0.0	-4.61	0.62	0.81	2.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14889	1816	8	0	9	0	0	logfile
✔	5WPT	8882	2021-08-08	2017-08-07	3.75	3.87	—	3.8	0.008	1.03	0.0	0.05	11.16	0.01	2.276	2.56	0.24	8.1	91.7	0.2	-5.18	0.62	0.82	3.22	3.8	0.003	0.75	0.0	0.04	15.83	0.01	2.222	7.35	0.18	6.6	93.4	0.0	0.87	0.99	0.63	0.81	1.84	14889	1816	8	0	9	0	0	logfile
✔	6iUG	9734	2021-08-08	2018-11-28	3.9	3.96	—	3.8	0.005	0.90	0.0	0.05	10.73	0.01	2.105	7.69	0.96	8.4	91.6	0.0	-3.83	0.72	0.83	1.84	3.8	0.004	0.79	0.0	0.05	14.35	0.00	1.942	16.93	0.26	8.8	91.2	0.0	-0.98	1.34	0.72	0.84	1.64	14585	1855	10	0	10	0	0	logfile
✔	6J40	9777	2021-08-12	2019-01-07	3.8	4.30	—	3.8	0.112	3.66	4.0	0.19	22.22	0.03	1.376	17.66	0.33	4.5	95.5	0.0	-5.08	0.80	0.72	1.93	3.8	0.010	2.99	1.0	0.07	22.98	0.01	1.299	71.20	0.22	4.7	95.2	0.0	-3.19	0.52	0.83	0.76	1.85	96390	8392	120	0	1656	0	0	logfile
✔	6NT7	0504	2021-08-07	2019-01-28	4.0	4.27	—	4.1	0.008	0.91	0.0	0.05	14.13	0.01	2.238	5.64	0.00	6.2	93.8	0.0	-3.29	0.75	0.85	—	4.1	0.004	0.69	0.0	0.04	15.90	0.00	2.243	9.72	0.20	4.1	95.9	0.0	0.75	1.47	0.76	0.85	—	4729	588	3	0	1	0	0	logfile
✔	5WPQ	8881	2021-08-08	2017-08-07	3.64	3.71	—	3.7	0.005	0.96	0.0	0.05	11.37	0.01	2.310	2.00	0.49	5.9	94.1	0.0	-4.69	0.58	0.79	2.64	3.7	0.002	0.66	0.0	0.04	15.88	0.00	2.231	6.96	0.43	4.8	95.2	0.0	1.23	0.94	0.59	0.79	1.11	14889	1816	8	0	9	0	0	logfile
✔	6E11	8952	2021-08-08	2018-07-08	4.23	4.35	—	4.2	0.007	1.11	6.0	0.06	9.72	0.01	1.079	10.20	0.49	7.9	91.8	0.3	-4.77	0.79	0.73	—	4.2	0.003	0.68	0.0	0.04	12.50	0.00	2.079	13.26	0.02	7.1	92.8	0.1	-0.79	1.11	0.81	0.78	—	57401	6820	34	0	373	0	0	logfile
✔	6HRE	0259	2021-08-07	2018-09-26	3.2	2.74	2.87	3.3	0.019	1.47	0.0	0.11	13.34	0.01	2.474	5.59	0.00	12.0	88.0	0.0	-4.17	0.32	0.80	4.40	3.3	0.004	0.79	0.0	0.05	17.07	0.00	2.194	6.99	0.50	5.8	94.2	0.0	-3.28	0.79	0.29	0.77	3.95	3522	462	6	0	0	0	0	logfile
✔	6Y1A	10669	2021-08-07	2020-02-11	4.2	3.60	1.84	4.3	0.005	1.09	0.0	0.07	9.42	0.00	2.509	15.01	0.00	4.3	95.7	0.0	-4.99	0.53	0.63	—	4.2	0.004	0.70	0.0	0.04	10.74	0.00	2.058	13.24	0.60	7.3	92.7	0.0	-4.93	1.56	0.57	0.75	—	2960	400	32	0	16	0	0	logfile
✔	6A96	6998	2021-08-08	2018-07-11	3.51	4.46	—	4.3	0.008	0.96	0.0	0.06	10.88	0.01	2.158	6.30	0.22	7.3	92.7	0.0	-3.71	0.74	0.77	1.32	4.2	0.004	0.89	0.0	0.05	16.50	0.01	2.130	15.38	0.22	4.3	95.7	0.0	-1.21	3.70	0.76	0.80	1.37	17049	2043	13	0	44	0	0	logfile
✔	6NF4	9360	2021-08-07	2018-12-18	2.98	3.35	—	3.3	0.036	2.37	0.0	0.49	16.04	0.01	2.379	2.34	0.27	3.2	96.8	0.0	0.16	0.69	0.84	3.04	3.3	0.003	0.90	0.0	0.10	16.10	0.00	2.220	16.20	1.36	4.4	95.6	0.0	3.54	1.17	0.59	0.83	1.78	6960	842	4	0	8	0	0	logfile

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