Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6YS8	10893	2021-12-01	2020-04-21	3.9	4.00	3.55	3.9	0.006	1.03	1.0	0.08	15.75	0.02	1.522	10.61	1.70	6.4	91.4	2.2	-3.81	0.65	0.83	1.77	3.9	0.005	0.93	0.0	0.05	17.11	0.00	2.095	16.40	0.85	4.7	94.2	1.1	0.64	0.71	0.66	0.82	0.63	5624	737	7	0	0	0	0	logfile
✔	7Ao8	11837	2021-12-02	2020-10-14	4.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10905	1350	9	0	8	0	0	logfile
✔	7CZB	30508	2021-12-01	2020-09-07	3.8	4.14	—	4.1	0.005	1.12	0.0	0.06	15.72	0.01	2.360	4.78	0.47	12.5	87.5	0.0	-4.95	0.56	0.80	2.30	4.1	0.003	0.91	0.0	0.05	17.03	0.00	2.245	10.91	0.94	10.8	89.2	0.0	-1.60	1.39	0.57	0.79	1.78	6304	776	4	0	0	0	0	logfile
✔	7JZ3	22529	2021-12-01	2020-09-01	2.56	2.99	—	3.0	0.003	0.62	0.0	0.05	13.64	0.00	2.211	10.50	1.09	5.8	94.2	0.0	-2.54	0.51	0.62	2.00	2.9	0.008	0.98	0.0	0.05	16.95	0.01	2.004	19.02	6.55	9.6	90.4	0.0	-2.34	1.64	0.50	0.66	1.40	8142	1038	3	0	0	0	0	logfile
✔	7KY7	23070	2021-12-02	2020-12-07	3.08	3.38	—	3.3	0.004	0.69	0.0	0.05	15.18	0.00	1.705	14.99	1.01	7.0	92.9	0.1	-3.55	0.70	0.81	2.28	3.3	0.003	0.60	0.0	0.04	16.39	0.00	1.968	11.40	0.18	6.3	93.7	0.0	-1.18	1.11	0.69	0.82	2.30	10294	1247	8	0	17	0	0	logfile
✔	6YKR	10830	2021-12-02	2020-04-06	3.0	3.10	2.86	3.1	0.004	0.84	0.0	0.05	9.41	0.01	2.314	2.28	0.00	2.6	97.4	0.0	-6.35	0.66	0.84	5.11	3.1	0.003	0.67	0.0	0.04	16.26	0.00	2.265	7.76	0.93	2.4	97.6	0.0	1.12	0.80	0.69	0.88	3.46	10189	1326	9	0	0	6	0	logfile
✔	7JZ6	22530	2021-12-02	2020-09-01	2.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20842	2646	12	0	4	18	0	logfile
✔	6YKM	10828	2021-12-02	2020-04-06	3.1	3.19	2.97	3.2	0.009	1.07	0.0	0.06	11.10	0.01	2.256	4.12	0.00	3.0	97.0	0.0	-4.68	0.68	0.86	4.14	3.2	0.003	0.59	0.0	0.04	14.94	0.00	2.166	9.33	0.09	2.8	97.2	0.0	1.07	1.09	0.72	0.88	2.26	10434	1357	10	0	0	8	0	logfile
✔	7A92	11682	2021-12-01	2020-09-01	4.2	4.58	4.29	4.2	0.007	0.83	0.0	0.06	14.45	0.01	2.222	3.86	1.19	5.2	94.7	0.1	-2.44	0.77	0.64	—	4.2	0.003	0.60	0.0	0.04	13.40	0.00	2.079	6.92	0.00	3.1	96.9	0.0	-0.13	0.77	0.89	0.83	—	10040	1231	5	0	10	0	0	logfile
✔	6XJB	22205	2021-12-01	2020-06-23	3.8	4.06	—	3.9	0.002	0.56	0.0	0.04	13.15	0.00	2.165	9.70	0.00	8.6	91.4	0.0	-3.06	0.88	0.82	1.76	3.9	0.005	0.69	0.0	0.04	15.37	0.00	2.075	14.23	0.46	8.2	91.8	0.0	-1.64	1.83	0.88	0.86	2.01	10070	1277	1	0	0	0	0	logfile
✔	7JW0	22512	2021-12-02	2020-08-24	4.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26251	4314	27	0	69	0	0	logfile
✔	7JV6	22494	2021-12-02	2020-08-20	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26648	3612	24	0	60	0	0	logfile
✔	6Lo8	0935	2021-12-01	2020-01-04	3.83	3.89	—	3.6	0.005	0.87	0.0	0.05	14.88	0.01	2.242	5.11	0.46	3.7	96.1	0.2	-3.08	0.65	0.79	1.72	3.6	0.005	0.90	0.0	0.04	17.08	0.00	2.100	14.32	0.57	5.0	94.9	0.1	1.39	0.92	0.66	0.80	1.60	7972	997	10	0	0	0	0	logfile
✔	7KY8	23071	2021-12-02	2020-12-07	3.85	3.91	—	3.9	0.004	0.70	0.0	0.05	14.37	0.00	2.208	13.00	0.00	8.4	91.6	0.0	-1.28	0.70	0.84	2.33	3.9	0.003	0.59	0.0	0.04	16.01	0.00	2.193	10.72	0.45	7.5	92.5	0.0	-1.10	0.33	0.70	0.84	2.14	10520	1274	8	0	19	0	0	logfile
✔	7K10	22619	2021-12-01	2020-09-06	3.3	3.44	—	3.4	0.006	0.98	0.0	0.05	15.43	0.01	2.300	4.19	0.37	10.6	89.3	0.1	-5.28	0.72	0.77	2.12	3.4	0.005	0.72	0.0	0.04	16.51	0.01	2.099	7.64	0.18	9.5	90.4	0.1	-1.67	0.41	0.72	0.78	1.66	10037	1259	1	0	0	0	0	logfile
✔	7B5S	12050	2021-12-01	2020-12-07	3.6	3.59	3.45	3.6	0.006	0.78	0.0	0.04	15.48	0.01	1.997	11.05	0.24	8.7	91.3	0.0	-0.49	0.73	0.83	2.15	3.6	0.003	0.62	0.0	0.04	17.35	0.00	2.172	10.92	0.60	7.7	92.3	0.0	0.85	0.39	0.73	0.82	1.06	7671	931	5	0	5	0	0	logfile
✔	6ZD0	11172	2021-12-01	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	3.7	0.003	0.74	0.0	0.04	5.33	0.00	2.199	10.22	0.00	19.5	80.1	0.4	-4.32	2.53	0.59	0.58	—	7962	1611	6	0	0	0	0	logfile
✘	6YV1	10940	2021-12-01	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.77	1.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2496	328	1	0	0	0	0	logfile
✔	7K11	22620	2021-12-01	2020-09-06	3.21	3.34	—	3.3	0.005	0.92	0.0	0.05	15.33	0.01	2.271	4.65	0.46	9.6	90.3	0.1	-5.00	0.69	0.76	1.74	3.3	0.003	0.66	0.0	0.04	16.62	0.00	2.225	7.25	0.09	8.7	91.3	0.0	-1.01	1.23	0.70	0.77	1.32	10011	1254	1	0	0	0	0	logfile
✔	7KPW	22990	2021-12-01	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.8	0.005	0.86	0.0	0.04	6.91	0.00	2.059	5.41	0.00	14.6	84.8	0.6	-1.66	2.04	0.83	0.83	—	4313	865	1	0	0	0	0	logfile

• ← previous
• Page 3 of 85
• next →