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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6WYK | 21967 | 2024-03-10 | 2020-05-13 | 4.0 | 4.14 | — | 4.2 | 0.007 | 0.77 | 0.0 | 0.05 | 11.98 | 0.00 | 2.223 | 5.97 | 0.00 | 3.4 | 96.6 | 0.0 | -2.28 | 0.62 | 0.77 | — | 4.2 | 0.004 | 0.77 | 0.0 | 0.04 | 16.10 | 0.00 | 2.204 | 10.05 | 4.29 | 1.9 | 98.1 | 0.0 | 2.01 | 0.80 | 0.62 | 0.78 | — | 3083 | 415 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZC5 | 14620 | 2024-03-23 | 2022-03-25 | 3.0 | 2.69 | — | 2.6 | 0.007 | 0.85 | 0.0 | 1.48 | 15.78 | 0.01 | 2.216 | 5.43 | 1.96 | 3.0 | 97.0 | 0.0 | -0.62 | 0.89 | 0.87 | 3.49 | 2.7 | 0.011 | 2.20 | 0.0 | 0.44 | 16.04 | 0.00 | 2.095 | 9.13 | 2.38 | 2.6 | 97.4 | 0.0 | 1.21 | 1.10 | 0.89 | 0.86 | 3.25 | 36692 | 4645 | 24 | 0 | 23 | 0 | 0 | logfile |
✔ | 6J5A | 0670 | 2024-03-11 | 2019-01-10 | 4.35 | 4.41 | — | 4.3 | 0.008 | 1.25 | 0.0 | 0.05 | 15.23 | 0.01 | 1.776 | 15.50 | 1.18 | 8.9 | 90.5 | 0.6 | -6.05 | 0.52 | 0.56 | — | 4.3 | 0.004 | 0.82 | 0.0 | 0.04 | 13.11 | 0.00 | 2.123 | 12.08 | 0.00 | 8.9 | 91.1 | 0.0 | -1.50 | 1.19 | 0.58 | 0.67 | — | 8544 | 1064 | 18 | 0 | 218 | 0 | 0 | logfile |
✔ | 6VK3 | 21224 | 2024-03-11 | 2020-01-18 | 3.7 | 3.81 | — | 3.8 | 0.006 | 0.93 | 0.0 | 0.06 | 14.84 | 0.01 | 2.013 | 12.45 | 0.00 | 5.1 | 94.8 | 0.1 | -2.61 | 0.68 | 0.80 | 1.94 | 3.8 | 0.003 | 0.60 | 0.0 | 0.04 | 17.00 | 0.00 | 2.211 | 7.96 | 3.45 | 5.0 | 95.0 | 0.0 | 0.35 | 1.62 | 0.67 | 0.79 | 1.57 | 7784 | 954 | 2 | 0 | 7 | 0 | 0 | logfile |
✔ | 7YAi | 33713 | 2024-03-11 | 2022-06-28 | 3.14 | 3.36 | 3.24 | 3.3 | 0.004 | 0.78 | 0.0 | 0.05 | 16.33 | 0.00 | 2.075 | 7.62 | 0.35 | 1.8 | 98.2 | 0.0 | 0.56 | 0.67 | 0.75 | 1.64 | 3.3 | 0.003 | 0.56 | 0.0 | 0.04 | 16.31 | 0.00 | 2.225 | 10.20 | 3.31 | 2.1 | 97.9 | 0.0 | 1.24 | 1.03 | 0.65 | 0.77 | 1.40 | 7678 | 1001 | 3 | 0 | 2 | 0 | 0 | logfile |
✔ | 7NPT | 12520 | 2024-03-11 | 2021-02-28 | 3.27 | 3.21 | 3.16 | 3.2 | 0.007 | 1.19 | 0.0 | 0.05 | 14.11 | 0.01 | 2.338 | 2.91 | 0.00 | 1.8 | 98.2 | 0.0 | -1.66 | 0.55 | 0.72 | 3.44 | 3.2 | 0.003 | 0.59 | 0.0 | 0.04 | 15.78 | 0.00 | 1.998 | 6.51 | 1.08 | 2.8 | 97.2 | 0.0 | 0.55 | 1.47 | 0.57 | 0.76 | 2.08 | 8609 | 552 | 3 | 0 | 0 | 0 | 4288 | logfile |
✔ | 7TT4 | 26110 | 2024-03-18 | 2022-01-31 | 4.2 | 4.40 | — | 4.3 | 0.005 | 0.77 | 0.0 | 0.05 | 10.61 | 0.00 | 2.051 | 2.23 | 0.00 | 1.2 | 98.8 | 0.0 | 0.72 | 0.72 | 0.76 | — | 4.3 | 0.002 | 0.57 | 0.0 | 0.04 | 13.04 | 0.00 | 2.028 | 6.25 | 0.00 | 2.1 | 97.9 | 0.0 | 0.60 | 2.39 | 0.70 | 0.77 | — | 20633 | 1346 | 6 | 0 | 0 | 0 | 10107 | logfile |
✔ | 6S59 | 10099 | 2024-03-16 | 2019-07-01 | 3.7 | 3.82 | — | 3.7 | 0.008 | 1.02 | 0.0 | 0.06 | 11.93 | 0.01 | 2.262 | 3.62 | 0.63 | 7.0 | 93.0 | 0.0 | -4.12 | 0.80 | 0.79 | 2.53 | 3.7 | 0.003 | 0.66 | 0.0 | 0.04 | 14.68 | 0.00 | 2.119 | 9.12 | 4.69 | 5.1 | 94.9 | 0.0 | 0.01 | 0.49 | 0.79 | 0.77 | 1.15 | 13397 | 2066 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 7LQ6 | 23482 | 2024-03-10 | 2021-02-13 | 3.28 | 4.07 | 3.16 | 3.5 | 0.005 | 0.76 | 0.0 | 0.05 | 15.77 | 0.00 | 1.549 | 9.45 | 1.41 | 5.5 | 94.4 | 0.2 | -4.83 | 0.90 | 0.85 | 3.36 | 3.5 | 0.002 | 0.59 | 0.0 | 0.04 | 16.29 | 0.00 | 2.146 | 7.09 | 0.88 | 3.9 | 96.1 | 0.0 | 0.16 | 1.02 | 0.91 | 0.87 | 1.86 | 5267 | 672 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FA1 | 28947 | 2024-03-10 | 2022-11-25 | 2.51 | 2.37 | 2.87 | 2.7 | 0.006 | 0.57 | 0.0 | 0.04 | 15.92 | 0.00 | 2.286 | 8.14 | 0.00 | 4.6 | 95.4 | 0.0 | 0.73 | 0.77 | 0.80 | 1.71 | 2.7 | 0.003 | 0.49 | 0.0 | 0.04 | 16.19 | 0.00 | 2.354 | 8.53 | 1.35 | 0.9 | 99.1 | 0.0 | 5.07 | 0.85 | 0.77 | 0.79 | 1.59 | 2553 | 339 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YER | 33775 | 2024-03-16 | 2022-07-06 | 3.0 | 3.14 | — | 3.2 | 0.003 | 0.55 | 0.0 | 0.04 | 13.65 | 0.00 | 2.248 | 4.24 | 0.13 | 6.3 | 93.2 | 0.4 | 0.97 | 0.69 | 0.82 | 2.38 | 3.2 | 0.002 | 0.55 | 0.0 | 0.04 | 16.31 | 0.00 | 2.157 | 4.83 | 1.76 | 5.9 | 93.6 | 0.5 | 1.17 | 1.13 | 0.68 | 0.83 | 2.13 | 14313 | 1810 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6D1W | 7786 | 2024-03-16 | 2018-04-12 | 3.54 | 3.85 | 3.45 | 3.8 | 0.007 | 0.77 | 0.0 | 0.04 | 9.07 | 0.00 | 2.154 | 18.61 | 0.27 | 6.5 | 93.3 | 0.2 | -3.21 | 0.70 | 0.73 | 2.98 | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 14.51 | 0.00 | 2.206 | 10.90 | 2.04 | 2.6 | 97.2 | 0.2 | 0.75 | 0.86 | 0.67 | 0.78 | 2.78 | 14492 | 1804 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6JT2 | 9885 | 2024-03-11 | 2019-04-08 | 3.8 | 3.88 | — | 3.8 | 0.004 | 0.74 | 0.0 | 0.04 | 11.36 | 0.01 | 1.980 | 10.08 | 3.54 | 4.0 | 95.7 | 0.3 | -2.54 | 0.80 | 0.80 | 2.23 | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 13.31 | 0.00 | 1.623 | 9.72 | 3.19 | 3.4 | 96.6 | 0.0 | -0.13 | 1.64 | 0.82 | 0.81 | 1.49 | 8191 | 1075 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 5T4D | 8354 | 2024-03-16 | 2016-08-29 | 3.0 | 3.12 | 2.96 | 3.1 | 0.010 | 0.81 | 0.0 | 0.05 | 9.48 | 0.00 | 2.120 | 12.34 | 0.26 | 4.4 | 95.6 | 0.0 | -2.69 | 0.75 | 0.79 | 4.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14876 | 1852 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 5X5B | 6705 | 2024-03-19 | 2017-02-15 | 3.7 | 3.87 | — | 3.8 | 0.006 | 1.13 | 0.0 | 0.06 | 10.42 | 0.01 | 2.241 | 8.73 | 0.66 | 12.0 | 88.0 | 0.0 | -4.94 | 0.79 | 0.78 | 1.59 | 3.8 | 0.004 | 0.75 | 0.0 | 0.05 | 14.85 | 0.00 | 2.112 | 17.51 | 3.63 | 10.4 | 89.6 | 0.0 | -2.18 | 3.32 | 0.81 | 0.78 | 1.17 | 24541 | 3139 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WHA | 21669 | 2024-03-11 | 2020-04-07 | 3.36 | 3.16 | — | 3.4 | 0.012 | 1.20 | 2.0 | 0.08 | 13.68 | 0.01 | 2.284 | 6.97 | 2.99 | 4.1 | 95.9 | 0.0 | -0.19 | 0.78 | 0.85 | 2.64 | 3.3 | 0.006 | 0.72 | 0.0 | 0.05 | 15.40 | 0.00 | 2.131 | 4.08 | 4.29 | 4.2 | 95.8 | 0.0 | 0.20 | 0.45 | 0.77 | 0.87 | 3.05 | 7888 | 1074 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6UWL | 20923 | 2024-03-10 | 2019-11-05 | 3.62 | 3.73 | — | 3.7 | 0.008 | 1.16 | 0.0 | 0.06 | 16.85 | 0.01 | 2.303 | 6.24 | 0.00 | 7.6 | 92.2 | 0.3 | -4.71 | 0.67 | 0.82 | 1.71 | 3.7 | 0.004 | 0.74 | 0.0 | 0.04 | 16.60 | 0.00 | 2.189 | 14.41 | 4.46 | 5.8 | 94.2 | 0.0 | 0.06 | 0.52 | 0.66 | 0.81 | 1.34 | 3029 | 402 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6UP7 | 20836 | 2024-03-10 | 2019-10-16 | 4.2 | 4.33 | — | 4.2 | 0.008 | 1.08 | 0.0 | 0.06 | 10.47 | 0.01 | 2.216 | 9.73 | 0.00 | 13.2 | 86.8 | 0.0 | -5.14 | 0.79 | 0.80 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 10.77 | 0.00 | 2.186 | 7.89 | 0.00 | 8.4 | 91.6 | 0.0 | -1.28 | 1.20 | 0.78 | 0.79 | — | 4166 | 676 | 5 | 0 | 10 | 0 | 0 | logfile |
✔ | 6U8S | 20691 | 2024-03-19 | 2019-09-05 | 3.14 | 3.91 | 3.03 | 3.7 | 0.012 | 1.36 | 0.0 | 0.07 | 15.53 | 0.01 | 2.257 | 9.60 | 9.06 | 5.1 | 94.9 | 0.0 | -4.07 | 0.60 | 0.79 | 2.61 | 3.7 | 0.005 | 0.80 | 0.0 | 0.05 | 15.41 | 0.00 | 2.133 | 18.82 | 4.78 | 5.1 | 94.9 | 0.0 | -1.71 | 0.66 | 0.60 | 0.79 | 2.40 | 23080 | 3008 | 16 | 0 | 16 | 0 | 0 | logfile |
✔ | 8D64 | 27216 | 2024-03-15 | 2022-06-06 | 3.14 | 3.25 | 3.11 | 3.2 | 0.007 | 0.81 | 0.0 | 0.06 | 13.69 | 0.01 | 2.275 | 7.13 | 0.00 | 6.6 | 93.4 | 0.0 | -3.61 | 0.72 | 0.84 | 3.27 | 3.2 | 0.006 | 0.67 | 0.0 | 0.05 | 15.30 | 0.00 | 2.177 | 6.25 | 2.33 | 6.4 | 93.6 | 0.0 | -0.56 | 0.38 | 0.71 | 0.86 | 3.17 | 12545 | 1540 | 10 | 0 | 0 | 0 | 0 | logfile |