Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J9P	6267	2022-12-13	2015-02-14	4.24	2.59	—	4.1	0.009	1.84	4.0	0.07	17.68	0.01	2.113	26.59	4.64	10.2	88.2	1.6	-3.58	0.73	0.78	—	4.2	0.003	1.08	0.0	0.04	13.94	0.00	2.147	16.50	0.00	8.3	91.0	0.7	-1.68	1.18	0.73	0.80	—	16952	2240	4	0	0	0	0	logfile
✔	6CVM	7770	2022-12-19	2018-03-28	1.9	2.49	1.94	2.3	0.012	0.92	0.0	0.07	10.17	0.01	2.053	4.13	0.00	2.7	97.3	0.0	-1.16	0.81	0.91	7.66	2.3	0.005	0.63	0.0	0.05	13.84	0.00	1.973	7.13	0.69	2.2	97.8	0.0	0.70	0.37	0.85	0.94	6.94	37062	4084	12	0	20	4194	0	logfile
✔	6ACD	9589	2022-12-15	2018-07-26	3.9	4.22	—	4.0	0.007	1.04	0.0	0.06	9.72	0.01	1.629	8.00	0.25	14.3	85.1	0.5	-4.47	0.79	0.77	1.25	4.0	0.004	0.76	0.0	0.05	13.69	0.00	2.076	17.71	0.47	13.6	86.2	0.3	-2.56	1.59	0.79	0.78	1.13	24845	3187	3	0	0	0	0	logfile
✔	5LKH	4068	2022-12-19	2016-07-22	3.46	5.27	—	11.0	0.018	2.37	65.0	0.12	12.66	0.02	2.255	87.25	1.96	3.4	95.2	1.4	-0.27	0.38	0.17	-0.03	8.8	0.003	0.81	0.0	0.04	15.64	0.00	2.120	25.20	0.34	6.3	93.7	0.0	-0.80	2.12	0.50	0.56	0.41	37345	4740	5	0	0	0	0	logfile
✘	5ZGB	6929	2022-12-19	2018-03-08	3.63	3.79	—	3.7	0.012	1.47	0.0	0.07	18.52	0.02	1.175	15.16	0.43	12.9	86.8	0.3	-5.22	0.73	0.74	2.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35011	3102	31	0	215	0	0	logfile
✔	5LKi	4068	2022-12-11	2016-07-22	3.46	3.72	—	3.5	0.013	1.24	5.0	0.06	10.71	0.01	0.579	39.63	0.18	7.7	91.7	0.6	-4.39	0.65	0.79	2.37	3.5	0.003	0.82	0.0	0.04	15.10	0.00	2.086	15.11	0.39	6.9	92.7	0.4	0.29	0.82	0.63	0.80	1.58	55415	7135	5	0	0	0	0	logfile
✔	6N7H	0356	2022-12-14	2018-11-27	3.6	3.75	—	3.7	0.009	1.31	0.0	0.07	12.99	0.01	2.008	8.78	1.35	12.3	87.1	0.6	-4.46	0.64	0.76	2.32	3.7	0.003	0.77	0.0	0.04	16.32	0.00	2.044	11.42	0.34	9.6	90.3	0.0	-0.36	1.44	0.66	0.78	1.93	17242	2153	8	0	23	0	0	logfile
✔	6RQJ	4983	2022-12-13	2019-05-15	3.5	4.14	3.49	3.7	0.006	0.74	0.0	0.11	14.34	0.00	2.041	11.21	0.06	6.9	92.9	0.2	-4.28	0.84	0.75	2.30	3.7	0.003	0.64	0.0	0.04	15.40	0.00	2.182	10.44	0.24	5.2	94.8	0.0	-0.60	0.50	0.89	0.85	2.02	14971	1899	6	0	2	0	0	logfile
✔	6QG0	4543	2022-12-19	2019-01-10	4.15	4.29	4.10	4.3	0.009	1.40	20.0	0.08	18.07	0.00	0.775	5.36	5.91	10.0	87.6	2.4	-3.14	0.56	0.68	—	4.2	0.003	0.79	0.0	0.05	15.15	0.00	2.084	17.23	0.05	9.4	90.1	0.5	-1.82	1.72	0.57	0.63	—	36980	4742	16	0	0	0	0	logfile
✔	6MRU	9213	2022-12-12	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.002	0.46	0.0	0.03	13.26	0.00	2.192	3.53	0.00	0.6	99.4	0.0	5.66	3.08	0.75	0.86	1.81	29107	3705	13	0	0	0	0	logfile
✔	6PYH	20524	2022-12-13	2019-07-29	4.3	4.52	—	4.3	0.016	1.05	0.0	0.05	14.64	0.01	2.079	28.82	0.55	18.2	81.6	0.2	-5.21	0.84	0.83	—	4.3	0.003	0.66	0.0	0.04	13.76	0.00	2.006	12.96	0.07	8.1	91.9	0.0	-2.26	0.65	0.84	0.82	—	13187	1648	3	0	0	0	0	logfile
✔	6MRT	9212	2022-12-11	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.46	0.0	0.03	15.43	0.00	2.226	3.14	1.29	0.5	99.5	0.0	5.71	3.08	0.73	0.86	2.07	26868	3420	12	0	0	0	0	logfile
✘	6Q2R	20578	2022-12-18	2019-08-08	4.3	4.92	—	4.6	0.004	0.81	0.0	0.05	8.41	0.01	1.384	4.93	0.00	5.4	94.6	0.0	-3.85	0.68	0.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30392	3800	16	0	40	0	0	logfile
✔	6H05	0108	2022-12-21	2018-07-06	2.9	3.15	—	3.5	0.016	1.09	0.0	0.07	9.74	0.01	0.426	17.81	0.00	8.5	91.5	0.0	-5.50	0.36	0.13	0.50	3.1	0.003	0.86	0.0	0.04	15.56	0.00	2.134	15.94	2.28	4.3	95.7	0.0	-1.34	1.63	0.58	0.47	0.65	44544	5664	24	0	0	0	0	logfile
✔	6CoZ	7545	2022-12-11	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.82	0.0	0.04	4.96	0.00	2.368	4.42	0.00	8.3	91.7	0.0	-1.63	1.58	0.82	0.77	—	1586	320	2	0	0	0	0	logfile
✔	6oHY	20074	2022-12-13	2019-04-08	4.1	4.28	4.05	4.2	0.006	0.98	0.0	0.06	11.07	0.01	2.288	4.35	0.40	10.5	88.9	0.5	-3.30	0.79	0.79	—	4.2	0.005	0.74	0.0	0.05	12.74	0.00	2.124	11.08	0.07	11.0	88.9	0.1	-2.10	1.23	0.80	0.82	—	15192	1701	54	0	126	0	0	logfile
✔	6E1H	8955	2022-12-13	2018-07-09	3.5	3.83	—	3.8	0.008	1.18	0.0	0.06	12.25	0.01	1.962	5.86	1.76	9.9	90.1	0.0	-3.67	0.60	0.76	2.52	3.9	0.003	0.84	0.0	0.04	15.82	0.00	1.821	15.59	0.57	8.2	91.8	0.0	-0.47	1.35	0.59	0.76	1.27	16667	2120	4	0	4	0	0	logfile
✔	6MRW	9214	2022-12-12	2018-10-15	4.3	4.76	—	4.3	0.006	0.98	0.0	0.04	10.35	0.01	2.080	4.61	0.41	2.1	97.9	0.0	-0.19	0.82	0.84	—	4.3	0.002	0.48	0.0	0.03	11.74	0.00	2.080	6.81	0.00	1.8	98.2	0.0	6.05	1.27	0.83	0.86	—	31346	3990	14	0	0	0	0	logfile
✔	6N1R	9318	2022-12-21	2018-11-10	4.0	4.12	—	4.0	0.006	0.89	0.0	0.05	8.46	0.01	0.296	17.83	0.00	8.7	91.3	0.0	-2.90	0.80	0.71	—	4.0	0.004	0.76	0.0	0.05	12.80	0.00	2.118	17.37	0.48	7.1	92.9	0.0	0.31	1.68	0.83	0.78	—	46044	5796	12	0	0	0	0	logfile
✔	6MHG	9114	2022-12-14	2018-09-17	3.57	3.83	—	3.7	0.021	1.81	0.0	0.09	9.72	0.01	2.175	2.01	0.24	4.0	95.6	0.4	0.49	0.75	0.86	3.50	3.6	0.005	0.76	0.0	0.04	14.22	0.00	2.077	11.69	0.43	7.1	92.8	0.1	-0.09	1.34	0.74	0.86	3.19	19931	2642	23	0	0	0	0	logfile

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