Table showing results for April 2023

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FMA	29290	2023-04-27	2022-12-22	3.1	3.42	3.39	3.4	0.002	0.48	0.0	0.04	11.37	0.00	1.426	7.73	0.00	2.7	97.3	0.0	1.06	0.53	0.72	2.38	3.4	0.002	0.52	0.0	0.04	13.95	0.00	2.056	6.66	0.18	2.7	97.3	0.0	2.05	1.15	0.60	0.80	2.36	72974	7227	22	0	0	0	28633	logfile
✔	6oWT	20217	2023-04-22	2019-05-10	3.8	4.08	—	4.0	0.003	0.61	0.0	0.04	12.40	0.01	2.304	4.41	2.31	4.4	95.6	0.0	-3.98	0.77	0.76	1.52	4.0	0.003	0.67	0.0	0.04	15.26	0.00	2.103	13.27	0.27	5.2	94.8	0.0	0.31	0.68	0.78	0.77	0.91	11649	1575	6	0	0	0	0	logfile
✔	6W6V	21564	2023-04-27	2020-03-17	3.0	3.67	—	3.6	0.004	0.63	0.0	0.04	14.19	0.00	2.092	6.70	0.05	10.9	89.1	0.0	-2.45	0.70	0.81	2.34	3.6	0.003	0.61	0.0	0.04	15.94	0.00	2.154	7.21	1.53	8.0	92.0	0.0	-1.36	0.70	0.68	0.80	1.83	24850	2306	11	294	0	0	0	logfile
✔	6V0B	20986	2023-04-22	2019-11-18	4.1	4.28	4.05	4.1	0.006	0.98	0.0	0.06	15.05	0.01	2.272	8.86	0.51	7.9	92.1	0.0	-4.96	0.82	0.74	—	4.1	0.004	0.70	0.0	0.05	13.92	0.00	2.087	17.89	0.00	8.3	91.7	0.0	-2.90	0.60	0.82	0.74	—	12485	1530	5	0	0	0	0	logfile
✔	6B47	7051	2023-04-26	2017-09-25	3.2	3.29	—	3.2	0.009	1.03	0.0	0.06	11.55	0.01	1.819	6.49	0.00	10.6	89.2	0.2	-4.03	0.78	0.73	1.20	3.2	0.003	0.60	0.0	0.04	14.35	0.00	2.077	9.04	0.37	6.9	93.1	0.0	-0.31	1.37	0.86	0.87	2.70	22213	2965	11	60	0	0	0	logfile
✘	7EK1	31165	2023-04-19	2021-04-03	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-0.75	—	—	2.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53500	6720	20	0	0	0	0	logfile
✔	7P9B	13261	2023-04-21	2021-07-26	2.45	2.64	2.53	2.6	0.008	0.76	0.0	0.05	10.07	0.01	1.733	7.36	0.93	2.5	97.5	0.0	-1.21	0.79	0.88	6.15	2.6	0.003	0.51	0.0	0.04	14.40	0.00	2.117	5.69	0.85	2.1	97.9	0.0	1.11	0.43	0.81	0.91	5.21	60290	7550	10	0	0	0	0	logfile
✔	7V6B	31741	2023-04-22	2021-08-20	3.3	2.81	3.21	3.3	0.012	1.65	3.0	0.09	13.69	0.01	2.312	6.55	5.01	4.3	95.7	0.0	-1.67	0.57	0.72	2.30	3.2	0.003	0.60	0.0	0.04	16.10	0.00	2.216	9.41	0.20	2.6	97.4	0.0	0.69	1.91	0.69	0.80	2.27	13633	1678	2	0	0	0	0	logfile
✔	8A9A	15274	2023-04-22	2022-06-28	3.3	3.59	3.34	3.6	0.003	0.67	0.0	0.04	18.00	0.00	2.116	12.52	0.14	10.5	89.1	0.4	-1.45	0.63	0.58	1.12	3.6	0.004	0.78	0.0	0.04	18.22	0.00	2.151	16.93	0.43	10.9	88.8	0.3	-2.17	1.47	0.70	0.69	1.25	12772	1618	2	0	0	0	0	logfile
✔	7L85	23222	2023-04-25	2020-12-31	2.9	3.14	2.89	3.1	0.025	1.68	0.0	0.10	9.89	0.01	2.365	2.39	0.00	2.3	97.7	0.0	0.88	0.81	0.89	4.84	3.1	0.005	0.61	0.0	0.05	15.79	0.01	2.156	7.44	1.12	3.2	96.8	0.0	0.92	1.29	0.76	0.90	3.92	20556	2664	24	0	0	0	0	logfile
✔	7VFE	31950	2023-04-22	2021-09-13	2.63	2.74	2.54	2.7	0.008	0.58	0.0	0.05	13.52	0.00	2.285	2.98	3.08	3.8	96.2	0.0	-0.79	0.84	0.89	5.29	2.7	0.003	0.55	0.0	0.05	16.07	0.00	2.254	3.78	2.46	2.0	98.0	0.0	0.41	1.14	0.81	0.89	4.84	12630	1587	3	0	0	0	0	logfile
✔	6CET	7465	2023-04-23	2018-02-12	4.4	4.41	—	4.3	0.007	1.42	0.0	0.07	13.40	0.01	2.251	8.50	0.96	19.7	80.1	0.2	-5.52	0.67	0.62	—	4.3	0.004	0.94	0.0	0.05	14.01	0.01	2.112	19.33	0.06	18.7	81.3	0.0	-3.78	1.59	0.68	0.63	—	14012	1741	3	0	0	0	0	logfile
✔	6GYP	0095	2023-04-24	2018-07-01	3.6	3.70	—	3.7	0.006	0.95	0.0	0.05	10.75	0.01	2.259	4.86	0.50	7.1	92.8	0.1	-4.51	0.57	0.68	2.48	3.7	0.004	0.71	0.0	0.04	15.05	0.00	2.161	11.89	0.45	6.0	93.9	0.0	-0.60	0.79	0.74	0.82	1.53	17811	2148	6	0	0	0	0	logfile
✔	7PK6	13466	2023-04-24	2021-08-25	2.15	2.27	2.23	2.3	0.005	0.60	0.0	0.05	17.06	0.01	1.864	4.25	2.22	2.0	98.0	0.0	1.43	0.73	0.77	4.80	2.2	0.003	0.55	0.0	0.04	17.46	0.00	2.152	6.42	2.12	2.2	97.8	0.0	1.53	0.87	0.78	0.88	4.85	120580	15100	20	0	0	0	0	logfile
✔	7TT7	26113	2023-04-22	2022-01-31	4.8	5.05	—	4.9	0.003	0.84	0.0	0.05	10.50	0.00	2.205	5.04	0.00	1.3	98.7	0.0	0.94	0.66	0.63	—	4.8	0.002	0.58	0.0	0.04	11.88	0.00	1.846	9.10	0.00	3.3	96.7	0.0	-0.18	1.58	0.70	0.73	—	13296	867	5	0	0	0	6468	logfile
✔	7NKi	12440	2023-04-28	2021-02-18	4.67	4.96	—	4.6	0.004	0.67	0.0	0.04	13.49	0.01	1.908	8.85	0.00	4.0	96.0	0.0	-0.64	0.67	0.41	—	4.6	0.003	0.69	0.0	0.04	14.03	0.00	1.901	21.72	0.00	6.5	93.5	0.0	-1.27	2.38	0.80	0.65	—	28775	1794	6	23	0	0	13868	logfile
✔	7TT5	26111	2023-04-23	2022-01-31	4.3	4.48	—	4.4	0.004	0.69	0.0	0.04	10.02	0.01	2.033	4.14	0.00	0.9	99.1	0.0	1.26	0.65	0.70	—	4.3	0.004	0.59	0.0	0.04	12.22	0.00	1.862	9.68	0.00	3.4	96.6	0.0	0.38	1.20	0.69	0.77	—	14255	928	5	0	0	0	6938	logfile
✔	7D69	30591	2023-04-21	2020-09-29	3.57	3.34	—	3.6	0.009	0.88	0.0	0.05	28.97	0.01	2.062	19.76	0.00	5.2	94.8	0.0	-1.18	0.78	0.80	2.26	3.6	0.004	0.61	0.0	0.04	28.62	0.00	2.102	15.84	0.16	3.5	96.5	0.0	1.62	1.16	0.77	0.79	1.48	10857	727	10	250	0	0	0	logfile
✔	6W5C	21541	2023-04-21	2020-03-13	2.9	2.92	—	3.2	0.004	0.64	0.0	0.04	16.12	0.00	2.103	8.53	0.85	7.4	92.4	0.2	-1.44	0.84	0.82	4.35	3.2	0.004	0.60	0.0	0.04	18.02	0.00	2.027	10.36	1.70	7.5	92.5	0.0	-0.17	1.16	0.83	0.82	3.72	10183	1023	5	105	0	0	0	logfile
✔	7NKA	12435	2023-04-28	2021-02-17	4.07	4.20	—	4.1	0.004	0.67	0.0	0.04	13.49	0.00	1.908	8.61	0.00	4.0	96.0	0.0	-0.66	0.63	0.51	—	4.1	0.003	0.62	0.0	0.04	14.26	0.00	1.859	11.93	0.00	5.0	95.0	0.0	-0.06	1.89	0.73	0.68	—	28778	1796	6	23	0	0	13868	logfile

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