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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7ZMD | 14795 | 2024-03-20 | 2022-04-19 | 2.93 | 3.18 | 2.97 | 3.2 | 0.002 | 0.52 | 0.0 | 0.08 | 13.13 | 0.01 | 2.146 | 3.80 | 0.00 | 2.5 | 97.5 | 0.0 | 0.93 | 0.68 | 0.78 | 3.52 | 3.2 | 0.003 | 0.67 | 0.0 | 0.10 | 15.55 | 0.00 | 2.083 | 5.11 | 1.41 | 3.2 | 96.8 | 0.0 | 0.47 | 0.56 | 0.72 | 0.83 | 4.12 | 18400 | 1191 | 2 | 0 | 0 | 0 | 9106 | logfile |
✔ | 7VFJ | 31956 | 2024-03-11 | 2021-09-13 | 3.98 | 4.28 | — | 4.1 | 0.004 | 0.83 | 0.0 | 0.05 | 13.08 | 0.01 | 2.134 | 13.86 | 0.00 | 7.0 | 92.8 | 0.3 | -0.92 | 0.66 | 0.77 | 1.38 | 4.1 | 0.003 | 0.89 | 0.0 | 0.05 | 16.51 | 0.00 | 2.126 | 16.44 | 4.91 | 8.2 | 91.6 | 0.2 | -0.75 | 1.06 | 0.67 | 0.79 | 0.85 | 8780 | 1130 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YKJ | 33892 | 2024-03-10 | 2022-07-22 | 3.5 | 3.71 | 3.62 | 3.7 | 0.013 | 1.78 | 1.0 | 0.09 | 15.54 | 0.04 | 1.761 | 8.58 | 2.98 | 6.6 | 92.2 | 1.1 | -2.51 | 0.51 | 0.72 | 1.70 | 3.7 | 0.003 | 0.70 | 0.0 | 0.05 | 15.65 | 0.01 | 2.093 | 12.12 | 5.37 | 5.5 | 94.0 | 0.5 | -1.13 | 1.24 | 0.52 | 0.75 | 1.39 | 4811 | 626 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JQB | 22432 | 2024-03-18 | 2020-08-10 | 2.7 | 3.10 | — | 3.0 | 0.007 | 0.83 | 0.0 | 0.05 | 22.44 | 0.01 | 2.217 | 6.46 | 0.36 | 6.9 | 93.0 | 0.1 | -4.40 | 0.70 | 0.74 | 2.66 | 3.0 | 0.003 | 0.62 | 0.0 | 0.04 | 22.44 | 0.00 | 2.081 | 11.37 | 2.97 | 5.4 | 94.6 | 0.0 | -1.11 | 1.92 | 0.79 | 0.84 | 2.13 | 74976 | 4859 | 34 | 1697 | 0 | 0 | 0 | logfile |
✔ | 5WLN | 8860 | 2024-03-24 | 2017-07-27 | 3.57 | 4.07 | — | 4.0 | 0.010 | 1.13 | 0.0 | 0.06 | 10.12 | 0.01 | 2.206 | 8.17 | 0.31 | 10.7 | 89.3 | 0.0 | -5.04 | 0.74 | 0.75 | 1.73 | 4.0 | 0.005 | 0.83 | 0.0 | 0.05 | 13.70 | 0.01 | 2.132 | 13.89 | 4.70 | 12.5 | 87.5 | 0.0 | -2.98 | 1.38 | 0.74 | 0.76 | 2.11 | 44415 | 5940 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oL5 | 16949 | 2024-03-10 | 2023-03-30 | 3.4 | 3.10 | 1.47 | 3.0 | 0.003 | 0.44 | 0.0 | 0.06 | 9.97 | 0.00 | 2.393 | 2.17 | 0.00 | 0.0 | 100.0 | 0.0 | -0.75 | 0.53 | 0.87 | 5.76 | 3.0 | 0.002 | 0.37 | 0.0 | 0.05 | 15.49 | 0.00 | 2.326 | 3.70 | 3.91 | 2.1 | 97.9 | 0.0 | -1.20 | 1.02 | 0.55 | 0.88 | 5.14 | 2260 | 310 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UTH | 20879 | 2024-03-11 | 2019-10-29 | 3.4 | 3.68 | 3.48 | 3.7 | 0.008 | 1.19 | 0.0 | 0.06 | 10.45 | 0.01 | 2.199 | 5.16 | 0.67 | 4.4 | 95.3 | 0.3 | -2.57 | 0.46 | 0.61 | 2.02 | 3.7 | 0.003 | 0.65 | 0.0 | 0.04 | 14.73 | 0.00 | 2.131 | 9.17 | 2.60 | 4.0 | 96.0 | 0.0 | 0.99 | 1.37 | 0.71 | 0.84 | 2.05 | 58394 | 7553 | 35 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EAT | 27985 | 2024-03-22 | 2022-08-29 | 3.1 | 3.35 | 3.09 | 3.3 | 0.004 | 0.54 | 0.0 | 0.04 | 12.78 | 0.00 | 2.047 | 5.94 | 0.00 | 2.7 | 97.3 | 0.0 | 0.06 | 0.66 | 0.80 | 3.27 | 3.3 | 0.004 | 0.51 | 0.0 | 0.04 | 14.12 | 0.00 | 1.973 | 7.30 | 0.91 | 1.9 | 98.1 | 0.0 | 2.33 | 0.38 | 0.64 | 0.80 | 3.05 | 34663 | 2349 | 15 | 0 | 0 | 0 | 17463 | logfile |
✔ | 7XDT | 33152 | 2024-03-11 | 2022-03-28 | 3.31 | 3.64 | 3.32 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 17.78 | 0.01 | 2.081 | 11.26 | 0.23 | 5.2 | 94.8 | 0.0 | -0.03 | 0.72 | 0.65 | 0.76 | 3.5 | 0.002 | 0.62 | 0.0 | 0.04 | 18.71 | 0.00 | 2.106 | 12.29 | 5.63 | 5.3 | 94.7 | 0.0 | 0.57 | 0.54 | 0.76 | 0.70 | 0.39 | 41990 | 5310 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EK1 | 28192 | 2024-03-15 | 2022-09-19 | 3.6 | 3.91 | 3.66 | 3.8 | 0.004 | 0.74 | 0.0 | 0.05 | 15.72 | 0.00 | 2.185 | 9.39 | 0.53 | 9.2 | 90.3 | 0.5 | -1.95 | 0.80 | 0.83 | 2.83 | 3.8 | 0.003 | 0.66 | 0.0 | 0.04 | 16.45 | 0.00 | 2.160 | 7.78 | 2.95 | 9.0 | 90.9 | 0.1 | -1.87 | 1.01 | 0.79 | 0.83 | 2.57 | 8497 | 1102 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YR5 | 34046 | 2024-03-10 | 2022-08-08 | 3.63 | 3.97 | 3.62 | 3.9 | 0.005 | 0.81 | 0.0 | 0.05 | 13.92 | 0.00 | 2.250 | 8.97 | 0.00 | 5.5 | 94.5 | 0.0 | -0.05 | 0.57 | 0.78 | 1.28 | 3.9 | 0.004 | 0.67 | 0.0 | 0.04 | 16.67 | 0.00 | 2.146 | 12.17 | 3.80 | 6.5 | 93.5 | 0.0 | 0.08 | 0.49 | 0.58 | 0.80 | 0.92 | 4828 | 622 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FAS | 31505 | 2024-03-14 | 2021-07-07 | 3.6 | 2.95 | — | 3.7 | 0.002 | 0.52 | 0.0 | 0.04 | 15.63 | 0.00 | 2.193 | 9.10 | 0.09 | 4.1 | 95.9 | 0.0 | 0.85 | 0.72 | 0.73 | 0.88 | 3.7 | 0.004 | 0.54 | 0.0 | 0.04 | 17.45 | 0.00 | 2.160 | 10.15 | 2.05 | 5.0 | 95.0 | 0.0 | 0.91 | 0.41 | 0.73 | 0.75 | 0.89 | 10173 | 1229 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VAi | 21140 | 2024-03-25 | 2019-12-17 | 3.68 | 3.98 | — | 3.9 | 0.005 | 0.69 | 0.0 | 0.04 | 14.95 | 0.00 | 2.266 | 8.96 | 0.96 | 8.7 | 91.3 | 0.0 | -2.39 | 0.72 | 0.82 | 3.11 | 3.9 | 0.003 | 0.56 | 0.0 | 0.04 | 16.37 | 0.00 | 2.233 | 6.91 | 3.58 | 7.8 | 92.2 | 0.0 | 1.64 | 1.25 | 0.67 | 0.82 | 2.53 | 45584 | 5874 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Z20 | 14454 | 2024-03-19 | 2022-02-25 | 2.29 | 2.70 | — | 2.5 | 0.009 | 0.78 | 2.0 | 0.06 | 24.28 | 0.01 | 2.134 | 6.28 | 2.34 | 4.9 | 95.0 | 0.2 | -0.59 | 0.72 | 0.82 | 3.85 | 2.6 | 0.003 | 0.57 | 0.0 | 0.04 | 23.75 | 0.00 | 2.070 | 7.24 | 4.14 | 4.3 | 95.6 | 0.1 | 0.13 | 1.09 | 0.76 | 0.87 | 4.03 | 91024 | 3153 | 32 | 3096 | 0 | 0 | 0 | logfile |
✔ | 8CVY | 27021 | 2024-03-17 | 2022-05-18 | 3.6 | 3.82 | 3.60 | 3.8 | 0.008 | 1.47 | 16.0 | 0.12 | 15.01 | 0.01 | 2.214 | 10.00 | 6.05 | 2.7 | 97.3 | 0.0 | 0.51 | 0.70 | 0.79 | 1.45 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 16.61 | 0.00 | 2.205 | 14.19 | 3.58 | 3.7 | 96.3 | 0.0 | 0.87 | 0.97 | 0.72 | 0.78 | 1.71 | 17930 | 2226 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LVT | 23542 | 2024-03-17 | 2021-02-26 | 4.6 | 4.32 | — | 4.0 | 0.008 | 1.36 | 3.0 | 0.09 | 13.04 | 0.01 | 2.057 | 6.40 | 0.96 | 6.4 | 93.3 | 0.3 | -2.96 | 0.68 | 0.65 | — | 3.8 | 0.003 | 0.72 | 0.0 | 0.04 | 13.01 | 0.00 | 2.198 | 12.57 | 0.00 | 5.5 | 94.3 | 0.1 | 0.26 | 16.94 | 0.55 | 0.45 | — | 18944 | 2876 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FEQ | 31560 | 2024-03-17 | 2021-07-21 | 3.2 | 3.55 | — | 3.6 | 0.010 | 1.20 | 0.0 | 0.07 | 14.49 | 0.01 | 2.172 | 1.94 | 0.19 | 12.9 | 86.6 | 0.6 | -6.13 | 0.47 | 0.75 | 3.40 | 3.6 | 0.002 | 0.64 | 0.0 | 0.04 | 16.41 | 0.00 | 2.188 | 5.57 | 0.78 | 7.8 | 92.1 | 0.1 | -3.01 | 1.04 | 0.66 | 0.86 | 2.40 | 19236 | 2520 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EKA | 28196 | 2024-03-11 | 2022-09-20 | 3.7 | 4.02 | 3.72 | 3.9 | 0.003 | 0.68 | 0.0 | 0.04 | 17.36 | 0.00 | 2.209 | 7.61 | 0.26 | 12.3 | 87.4 | 0.3 | -1.98 | 0.78 | 0.85 | 2.25 | 3.9 | 0.003 | 0.69 | 0.0 | 0.04 | 17.49 | 0.00 | 2.205 | 8.70 | 3.99 | 12.1 | 87.7 | 0.1 | -1.98 | 0.98 | 0.78 | 0.85 | 2.55 | 7023 | 905 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7X7M | 33041 | 2024-03-15 | 2022-03-09 | 2.33 | 2.38 | 2.34 | 2.3 | 0.007 | 0.72 | 13.0 | 0.05 | 17.99 | 0.01 | 2.256 | 4.82 | 2.56 | 2.6 | 97.4 | 0.0 | 2.72 | 0.78 | 0.86 | 3.51 | 2.3 | 0.007 | 0.77 | 47.0 | 0.06 | 18.49 | 0.01 | 2.176 | 4.68 | 3.49 | 2.7 | 97.3 | 0.0 | 1.79 | 0.50 | 0.80 | 0.88 | 3.56 | 70620 | 9240 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UiG | 26545 | 2024-03-20 | 2022-03-29 | 4.3 | 8.24 | 4.32 | 3.9 | 0.005 | 0.80 | 0.0 | 0.05 | 12.88 | 0.01 | 0.850 | 11.11 | 0.09 | 1.3 | 98.5 | 0.1 | 1.54 | 0.45 | 0.44 | — | 3.9 | 0.010 | 0.70 | 0.0 | 0.04 | 12.89 | 0.00 | 2.117 | 17.22 | 0.00 | 2.6 | 97.4 | 0.0 | 1.41 | 0.75 | 0.58 | 0.78 | — | 27580 | 3390 | 17 | 0 | 0 | 0 | 0 | logfile |