Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3JBS	6478	2022-05-12	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.004	0.63	0.0	0.04	18.27	0.00	2.222	7.93	3.29	1.7	98.3	0.0	0.83	1.30	0.22	0.81	3.95	1401	175	1	0	0	0	0	logfile
✔	6TGP	10500	2022-05-12	2019-11-17	4.4	4.64	—	4.3	0.013	1.90	1.0	0.13	12.88	0.01	2.228	7.38	2.08	5.2	94.8	0.0	-3.36	0.45	0.85	—	4.1	0.005	0.79	0.0	0.04	12.86	0.00	2.270	20.30	0.00	5.2	94.8	0.0	0.17	1.84	0.44	0.79	—	1344	176	2	0	0	0	0	logfile
✔	6QJH	4563	2022-05-12	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.003	0.61	0.0	0.05	15.77	0.00	2.278	5.61	0.00	2.3	97.7	0.0	-2.55	1.57	0.31	0.78	2.85	1302	177	3	0	0	0	0	logfile
✔	6RiU	4898	2022-05-12	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.003	0.67	0.0	0.03	16.53	0.00	2.057	13.17	0.00	5.1	94.9	0.0	-0.39	1.43	0.61	0.75	1.30	2882	182	2	0	0	0	1430	logfile
✔	6R23	4708	2022-05-12	2019-03-15	4.9	4.57	—	4.6	0.006	1.07	0.0	0.05	16.56	0.01	2.332	7.52	0.00	7.9	92.1	0.0	-4.61	0.60	0.75	—	4.6	0.003	0.59	0.0	0.03	16.52	0.00	2.361	7.85	0.00	6.7	93.3	0.0	0.29	3.60	0.60	0.73	—	1518	182	2	0	0	0	0	logfile
✔	7QK3	14030	2022-05-12	2021-12-17	2.44	2.73	2.35	2.7	0.010	2.07	0.0	0.11	12.55	0.01	2.519	0.00	0.00	3.4	96.6	0.0	-3.04	0.38	0.77	5.65	2.7	0.003	0.73	0.0	0.05	16.22	0.00	2.309	3.65	1.28	4.0	96.0	0.0	-2.83	1.47	0.40	0.82	5.18	2742	183	3	0	0	0	1407	logfile
✔	6C4H	7340	2022-05-13	2018-01-12	3.1	3.33	—	3.3	0.011	1.19	1.0	0.11	16.68	0.05	1.913	7.76	6.80	5.3	94.7	0.0	-2.61	0.43	0.85	3.61	3.3	0.008	0.92	0.0	0.04	15.73	0.01	1.777	7.89	0.68	7.0	93.0	0.0	-2.37	0.39	0.39	0.86	4.75	15326	184	8	648	34	0	0	logfile
✔	7ABK	11698	2022-05-12	2020-09-07	3.6	4.10	3.49	3.9	0.004	0.66	0.0	0.04	16.30	0.00	2.315	5.67	1.23	1.5	98.5	0.0	0.91	0.28	0.87	1.10	3.9	0.003	0.67	0.0	0.03	19.97	0.01	2.302	7.56	0.62	2.1	97.9	0.0	5.19	1.33	0.28	0.85	1.55	1574	196	1	0	0	0	0	logfile
✔	7oG6	12879	2022-05-12	2021-05-06	3.3	3.47	—	2.9	0.008	0.82	0.0	0.04	17.33	0.01	2.325	7.36	6.10	9.6	90.4	0.0	-4.47	0.28	0.82	2.77	2.9	0.003	0.58	0.0	0.04	16.44	0.00	2.233	9.92	0.00	6.6	93.4	0.0	-0.04	0.54	0.27	0.84	3.04	1602	199	2	5	0	0	0	logfile
✔	7QKH	14042	2022-05-12	2021-12-17	3.17	3.37	2.07	3.5	0.011	2.48	5.0	0.19	15.22	0.01	2.470	2.26	0.00	14.6	85.4	0.0	-3.56	0.37	0.74	3.98	3.5	0.004	0.97	0.0	0.22	15.37	0.00	2.116	8.71	0.00	6.8	93.2	0.0	-2.57	2.30	0.31	0.69	4.34	3105	204	6	0	0	0	1593	logfile
✔	6X0V	21985	2022-05-12	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.46	0.0	0.04	13.09	0.00	2.230	19.17	0.00	6.0	94.0	0.0	2.59	1.22	0.40	0.75	—	1384	211	4	0	0	0	62	logfile
✔	7QL1	14060	2022-05-12	2021-12-19	3.34	3.41	3.13	3.4	0.011	2.01	0.0	0.10	11.06	0.01	2.654	1.47	0.00	7.5	92.5	0.0	-3.09	0.42	0.83	4.57	3.4	0.004	0.73	0.0	0.05	15.67	0.00	2.155	10.56	0.00	3.3	96.7	0.0	-2.40	1.74	0.37	0.79	4.22	1671	219	3	0	0	0	0	logfile
✔	7QKK	14045	2022-05-12	2021-12-17	2.8	2.31	2.82	3.2	0.012	2.17	4.0	0.12	13.17	0.02	2.483	1.98	0.00	9.5	90.5	0.0	-3.44	0.37	0.77	4.39	3.2	0.007	0.83	0.0	0.05	17.75	0.00	2.156	12.45	2.02	6.8	93.2	0.0	-3.24	2.17	0.34	0.78	3.28	3537	228	3	0	0	0	1803	logfile
✔	7M61	23686	2022-05-12	2021-03-25	3.8	3.83	—	4.1	0.005	1.01	0.0	0.08	12.79	0.00	2.218	23.57	0.00	14.3	85.7	0.0	-4.63	0.49	0.73	2.45	3.9	0.004	0.78	0.0	0.05	14.97	0.00	2.122	21.71	1.03	14.8	85.2	0.0	-4.62	0.86	0.47	0.75	2.83	1690	230	10	0	10	0	0	logfile
✔	6XTB	10618	2022-05-12	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.004	1.06	0.0	0.05	7.90	0.00	2.205	9.62	0.00	22.1	77.9	0.0	-5.53	2.43	0.34	0.64	—	1161	235	1	0	0	0	0	logfile
✔	6VW2	21410	2022-05-12	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.005	0.96	0.0	0.05	14.94	0.00	2.171	15.12	0.95	19.5	80.5	0.0	-4.88	0.44	0.40	0.72	1.55	1800	240	10	0	0	0	0	logfile
✔	7RSQ	24677	2022-05-12	2021-08-11	3.8	4.03	3.73	4.1	0.008	0.80	0.0	0.05	12.74	0.00	2.360	4.01	2.88	3.0	97.0	0.0	-0.64	0.63	0.68	1.39	4.2	0.002	0.51	0.0	0.03	15.35	0.00	2.389	2.76	0.00	2.6	97.4	0.0	2.59	1.83	0.63	0.70	1.77	3970	246	1	0	0	0	1958	logfile
✔	7JZU	22574	2022-05-12	2020-09-02	3.1	3.26	3.10	3.3	0.015	1.33	0.0	0.08	9.63	0.01	2.509	0.78	0.00	3.3	96.7	0.0	0.23	0.69	0.76	4.15	3.3	0.003	0.59	0.0	0.04	14.23	0.00	2.252	5.19	0.00	3.3	96.7	0.0	0.46	1.61	0.69	0.80	4.31	1987	248	3	0	3	0	0	logfile
✔	7QKF	14040	2022-05-12	2021-12-17	2.83	2.46	2.72	2.8	0.012	2.23	2.0	0.21	13.42	0.01	2.598	0.53	0.00	8.4	91.6	0.0	-2.72	0.40	0.79	6.57	2.8	0.004	1.06	0.0	0.25	17.62	0.00	2.431	6.09	2.31	3.4	96.6	0.0	-3.47	1.38	0.41	0.86	6.04	3783	249	6	0	0	0	1926	logfile
✔	7M64	23688	2022-05-12	2021-03-25	4.0	4.02	—	4.3	0.008	1.15	0.0	0.07	10.07	0.00	2.451	19.77	0.00	8.7	91.3	0.0	-3.84	0.52	0.75	—	4.3	0.003	0.90	0.0	0.04	11.30	0.00	2.242	6.78	0.00	5.2	94.8	0.0	-4.00	1.14	0.51	0.74	—	1850	250	10	0	10	0	0	logfile

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