Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7JZU	22574	2021-08-07	2020-09-02	3.1	3.26	3.10	3.3	0.015	1.33	0.0	0.08	9.63	0.01	2.509	0.52	0.00	3.3	96.7	0.0	0.23	0.69	0.76	4.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1987	248	3	0	3	0	0	logfile
✔	6ZS5	11388	2021-08-07	2020-07-15	3.5	4.02	3.66	3.8	0.008	1.01	1.0	0.06	15.42	0.01	2.202	4.52	0.00	4.7	95.3	0.0	-2.98	0.67	0.80	2.81	3.9	0.004	0.71	0.0	0.04	17.56	0.01	2.227	8.30	0.47	2.8	97.2	0.0	-1.73	2.37	0.67	0.79	2.36	2036	257	4	0	7	0	0	logfile
✔	7JZM	22533	2021-08-07	2020-09-02	3.5	3.74	3.50	3.7	0.015	1.37	0.0	0.08	9.25	0.01	2.420	0.76	0.00	2.0	98.0	0.0	0.75	0.75	0.78	4.01	3.7	0.003	0.65	0.0	0.04	14.77	0.00	2.193	8.12	0.00	2.4	97.6	0.0	0.55	1.27	0.76	0.79	2.82	2033	258	3	0	3	0	0	logfile
✔	6F1Z	4172	2021-08-07	2017-11-23	3.4	4.16	—	3.4	0.004	0.97	0.0	0.06	11.17	0.01	2.264	11.67	0.81	8.6	91.4	0.0	-4.21	0.64	0.68	-1.41	3.5	0.004	0.96	0.0	0.05	16.51	0.01	2.074	30.11	0.00	8.6	91.4	0.0	-1.36	1.85	0.67	0.77	-0.13	2138	265	4	0	0	0	0	logfile
✔	7B6E	12053	2021-08-07	2020-12-07	4.5	2.79	—	5.1	0.005	1.03	0.0	0.05	15.04	0.01	2.129	35.59	0.00	10.9	89.1	0.0	-3.88	0.62	0.66	—	4.9	0.003	0.99	0.0	0.05	14.80	0.00	2.185	23.73	0.00	11.3	88.7	0.0	-1.49	1.10	0.61	0.65	—	2205	269	1	0	0	0	0	logfile
✔	7BX7	30235	2021-08-07	2020-04-17	2.8	2.94	—	2.9	0.009	0.84	0.0	0.04	12.96	0.00	2.228	15.34	0.00	9.3	90.7	0.0	-5.83	0.40	0.78	6.36	2.9	0.004	0.60	0.0	0.04	13.82	0.00	2.170	11.28	2.30	8.1	91.9	0.0	-5.48	1.13	0.40	0.78	6.34	1896	270	6	0	0	0	0	logfile
✔	6ZRQ	11382	2021-08-07	2020-07-14	3.9	4.06	—	4.2	0.014	1.20	0.0	0.05	12.20	0.00	2.597	20.13	0.00	5.0	95.0	0.0	-4.20	0.64	0.62	3.62	4.2	0.003	0.74	0.0	0.04	13.08	0.00	2.142	20.64	2.31	18.3	81.7	0.0	-6.23	2.16	0.70	0.77	2.54	3816	276	12	0	0	0	1776	logfile
✔	6VPS	21316	2021-08-07	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.89	6.11	2.7	0.002	0.48	0.0	0.03	19.69	0.00	2.391	3.50	1.63	6.9	93.1	0.0	-3.67	1.20	0.47	0.87	6.71	2736	279	9	0	0	0	0	logfile
✔	7JV2	22491	2021-08-07	2020-08-20	3.5	3.48	3.41	3.7	0.015	1.39	0.0	0.08	11.43	0.01	2.587	0.00	1.32	3.6	96.4	0.0	0.82	0.69	0.74	3.48	3.7	0.004	0.72	0.0	0.04	14.86	0.00	2.255	12.84	0.88	6.9	93.1	0.0	-0.65	1.28	0.71	0.78	3.52	2151	282	3	0	0	0	0	logfile
✔	6GX5	0077	2021-08-07	2018-06-26	3.2	2.51	2.94	3.2	0.017	1.20	0.0	0.11	16.09	0.01	2.596	5.96	4.94	4.3	95.7	0.0	-3.50	0.85	0.88	5.60	3.2	0.004	0.74	0.0	0.05	17.29	0.00	2.258	8.02	0.41	5.4	94.6	0.0	-2.79	0.65	0.83	0.86	5.18	2133	282	3	0	0	0	0	logfile
✔	6WQK	21871	2021-08-07	2020-04-29	3.1	3.26	—	3.3	0.003	0.70	0.0	0.04	14.47	0.00	2.272	4.54	0.00	1.8	98.2	0.0	-5.40	0.48	0.84	4.99	3.3	0.005	0.74	0.0	0.05	13.65	0.00	2.234	5.07	0.54	4.7	95.3	0.0	-4.44	0.45	0.48	0.86	5.46	2070	285	5	0	0	0	0	logfile
✔	6ZRF	11380	2021-08-07	2020-07-13	3.6	3.66	1.96	3.6	0.014	1.03	0.0	0.05	13.43	0.00	1.993	39.08	0.00	4.9	95.1	0.0	-6.22	0.67	0.79	1.84	3.7	0.007	0.86	0.0	0.05	14.96	0.00	2.128	29.34	0.42	15.2	84.8	0.0	-5.99	0.53	0.71	0.82	3.09	2220	300	12	0	0	0	0	logfile
✔	7C1D	30269	2021-08-07	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	17.40	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.004	0.69	0.0	0.05	14.89	0.00	2.232	21.81	0.52	20.1	79.9	0.0	-4.46	2.84	0.42	0.76	2.27	2034	306	6	0	0	0	0	logfile
✔	6MLU	9146	2021-08-07	2018-09-28	4.0	4.03	—	4.0	0.005	1.05	0.0	0.06	9.86	0.01	2.406	5.97	0.69	10.6	89.4	0.0	-4.38	0.40	0.78	—	4.0	0.005	1.13	0.0	0.06	17.83	0.01	2.235	23.47	1.39	15.6	84.4	0.0	-2.41	4.15	0.44	0.76	—	2516	306	2	0	0	0	0	logfile
✔	6YJ5	10816	2021-08-07	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.89	0.0	0.05	13.19	0.01	2.183	4.49	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.004	0.74	0.0	0.05	15.66	0.01	2.252	8.98	0.61	9.2	90.8	0.0	-1.79	0.85	0.51	0.72	2.92	2061	306	1	0	0	0	0	logfile
✘	7N9A	24253	2021-08-07	2021-06-17	3.5	2.68	—	2.4	0.007	1.26	0.0	0.06	12.63	0.01	2.135	19.75	0.00	2.9	97.1	0.0	-0.16	0.72	0.70	2.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2431	312	2	0	0	0	0	logfile
✔	7LXW	23577	2021-08-07	2021-03-05	2.8	3.13	2.86	3.2	0.012	1.20	0.0	0.07	10.03	0.01	2.593	0.41	0.00	1.3	98.7	0.0	0.97	0.78	0.81	5.37	3.2	0.005	0.72	0.0	0.06	15.39	0.01	2.238	10.16	1.90	1.7	98.3	0.0	0.49	0.75	0.79	0.84	5.56	2524	317	5	0	5	0	0	logfile
✔	6PEo	20328	2021-08-07	2019-06-20	3.3	3.52	—	3.6	0.003	0.54	0.0	0.05	13.06	0.01	2.492	10.62	0.00	9.7	90.3	0.0	-1.64	0.41	0.82	3.20	3.6	0.007	0.71	0.0	0.06	15.68	0.00	2.399	9.07	0.44	9.4	90.6	0.0	-2.46	2.46	0.43	0.83	4.69	2205	320	5	0	0	0	0	logfile
✔	6CoZ	7545	2021-08-07	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.5	0.003	0.85	0.0	0.04	5.26	0.00	2.361	3.54	0.00	11.5	88.5	0.0	-1.90	1.67	0.83	0.78	—	1586	320	2	0	0	0	0	logfile
✔	7MJi	23874	2021-08-07	2021-04-20	2.81	3.32	—	3.2	0.006	0.80	0.0	0.05	12.43	0.01	2.367	2.85	0.00	2.8	97.2	0.0	-0.83	0.56	0.84	4.52	3.2	0.003	0.59	0.0	0.04	15.62	0.00	2.347	6.51	2.57	2.5	97.5	0.0	-0.01	1.44	0.58	0.85	4.26	2522	320	3	0	1	0	0	logfile

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