Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7B6E	12053	2021-12-01	2020-12-07	4.5	2.79	—	5.1	0.005	1.03	0.0	0.05	15.04	0.01	2.129	36.05	0.00	10.9	89.1	0.0	-3.88	0.62	0.66	—	5.1	0.004	0.97	0.0	0.05	15.19	0.01	2.191	25.33	0.00	10.6	89.4	0.0	-1.71	0.86	0.61	0.66	—	2205	269	1	0	0	0	0	logfile
✔	7BX7	30235	2021-12-01	2020-04-17	2.8	2.94	—	2.9	0.009	0.84	0.0	0.04	12.96	0.00	2.228	15.34	0.00	9.3	90.7	0.0	-5.83	0.40	0.78	6.36	2.9	0.004	0.60	0.0	0.04	13.78	0.00	2.166	11.86	1.72	8.5	91.5	0.0	-5.45	1.13	0.41	0.79	6.15	1896	270	6	0	0	0	0	logfile
✔	7M65	23689	2021-12-01	2021-03-25	4.1	4.11	—	4.3	0.009	1.40	0.0	0.10	12.05	0.00	2.392	33.63	0.00	17.6	82.4	0.0	-6.09	0.52	0.73	—	4.2	0.004	0.88	0.0	0.05	11.88	0.00	2.144	20.38	0.00	14.5	85.5	0.0	-6.10	4.44	0.52	0.72	—	2025	275	10	0	5	0	0	logfile
✔	6ZRQ	11382	2021-12-01	2020-07-14	3.9	4.06	—	4.2	0.014	1.20	0.0	0.05	12.20	0.00	2.597	20.13	0.00	5.0	95.0	0.0	-4.20	0.64	0.62	3.62	4.2	0.003	0.70	0.0	0.04	12.79	0.00	2.180	20.13	0.00	15.4	84.6	0.0	-5.93	2.13	0.70	0.77	2.95	3816	276	12	0	0	0	1776	logfile
✔	6VPS	21316	2021-12-01	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.89	6.11	2.7	0.004	0.53	0.0	0.03	20.06	0.00	2.403	3.89	0.98	6.9	93.1	0.0	-3.78	1.19	0.48	0.88	6.47	2736	279	9	0	0	0	0	logfile
✔	6GX5	0077	2021-12-01	2018-06-26	3.2	2.51	2.94	3.2	0.017	1.20	0.0	0.11	16.09	0.01	2.596	5.96	4.94	4.3	95.7	0.0	-3.50	0.85	0.88	5.60	3.2	0.005	0.77	0.0	0.05	17.37	0.00	2.112	7.56	0.82	5.4	94.6	0.0	-2.84	0.66	0.83	0.86	4.48	2133	282	3	0	0	0	0	logfile
✔	7JV2	22491	2021-12-01	2020-08-20	3.5	3.48	3.41	3.7	0.015	1.39	0.0	0.08	11.43	0.01	2.587	0.00	1.32	3.6	96.4	0.0	0.82	0.69	0.74	3.48	3.7	0.004	0.74	0.0	0.04	14.94	0.00	2.254	14.27	0.44	6.9	93.1	0.0	-1.07	1.28	0.71	0.77	3.71	2151	282	3	0	0	0	0	logfile
✘	6WQK	21871	2021-12-01	2020-04-29	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-5.40	—	—	4.99	3.3	0.004	0.72	0.0	0.05	13.47	0.00	2.242	4.54	0.00	4.4	95.6	0.0	-4.42	—	0.48	0.86	5.39	2070	285	5	0	0	0	0	logfile
✔	7E0F	30931	2021-12-01	2021-01-27	3.02	3.18	—	3.5	0.016	0.99	0.0	0.07	15.88	0.00	2.341	9.76	0.00	12.8	87.2	0.0	-5.10	0.39	0.81	5.04	3.4	0.004	0.64	0.0	0.05	16.06	0.00	2.487	5.37	0.00	9.2	90.8	0.0	-3.48	0.60	0.39	0.80	3.91	2022	294	6	0	0	0	0	logfile
✘	6ZRF	11380	2021-12-01	2020-07-13	3.6	3.66	1.96	3.6	0.014	1.03	0.0	0.05	13.43	0.00	1.993	42.14	0.00	4.9	95.1	0.0	-6.22	0.67	0.79	1.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2220	300	12	0	0	0	0	logfile
✔	6YJ5	10816	2021-12-01	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.22	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.003	0.67	0.0	0.05	15.25	0.01	2.265	7.92	0.61	8.2	91.8	0.0	-1.96	0.81	0.50	0.72	2.81	2061	306	1	0	0	0	0	logfile
✘	7C1D	30269	2021-12-01	2020-05-03	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-6.46	—	—	3.47	6.5	0.004	0.69	0.0	0.05	14.90	0.00	2.239	18.63	0.52	24.5	75.5	0.0	-4.57	—	0.39	0.75	2.42	2034	306	6	0	0	0	0	logfile
✘	6MLU	9146	2021-12-01	2018-09-28	4.0	4.03	—	4.0	0.005	1.05	0.0	0.06	9.86	0.01	2.406	5.97	0.69	10.6	89.4	0.0	-4.38	0.40	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2516	306	2	0	0	0	0	logfile
✔	7N9A	24253	2021-12-01	2021-06-17	3.5	2.68	—	2.4	0.007	1.26	0.0	0.06	12.63	0.01	2.135	19.96	0.00	2.9	97.1	0.0	-0.16	0.72	0.70	2.72	2.4	0.003	0.71	0.0	0.04	15.45	0.00	2.164	13.87	0.00	2.9	97.1	0.0	-1.00	0.56	0.72	0.69	1.84	2431	312	2	0	0	0	0	logfile
✔	7LXW	23577	2021-12-01	2021-03-05	2.8	3.13	2.86	3.2	0.012	1.20	0.0	0.07	10.03	0.01	2.593	0.61	0.00	1.3	98.7	0.0	0.97	0.78	0.81	5.37	3.2	0.004	0.65	0.0	0.05	15.02	0.01	2.225	10.77	1.52	1.7	98.3	0.0	0.44	1.17	0.73	0.83	5.04	2524	317	5	0	5	0	0	logfile
✔	6CoZ	7545	2021-12-01	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.82	0.0	0.04	4.96	0.00	2.368	4.42	0.00	8.3	91.7	0.0	-1.63	1.58	0.82	0.77	—	1586	320	2	0	0	0	0	logfile
✔	7M62	23687	2021-12-01	2021-03-25	3.9	3.91	—	4.3	0.007	1.13	0.0	0.07	14.83	0.00	2.321	32.83	0.00	23.3	76.7	0.0	-4.97	0.55	0.62	2.27	4.0	0.003	0.89	0.0	0.05	15.91	0.00	2.143	22.89	0.74	19.7	80.3	0.0	-4.94	2.74	0.56	0.66	3.42	2380	320	10	0	10	0	0	logfile
✔	6PEo	20328	2021-12-01	2019-06-20	3.3	3.52	—	3.6	0.003	0.54	0.0	0.05	13.06	0.01	2.492	10.62	0.00	9.7	90.3	0.0	-1.64	0.41	0.82	3.20	3.6	0.006	0.64	0.0	0.06	15.74	0.00	2.435	9.07	0.00	8.1	91.9	0.0	-2.61	1.64	0.41	0.82	4.88	2205	320	5	0	0	0	0	logfile
✔	7MJi	23874	2021-12-01	2021-04-20	2.81	3.32	—	3.2	0.006	0.80	0.0	0.05	12.43	0.01	2.367	2.85	0.00	2.8	97.2	0.0	-0.83	0.56	0.84	4.52	3.2	0.004	0.58	0.0	0.04	15.25	0.00	2.300	7.73	1.10	2.8	97.2	0.0	-0.01	1.44	0.58	0.86	4.21	2522	320	3	0	1	0	0	logfile
✔	6TJo	10512	2021-12-01	2019-11-26	3.2	3.43	2.57	3.5	0.013	1.18	0.0	0.07	9.67	0.01	2.394	2.20	0.00	12.7	87.3	0.0	-4.63	0.36	0.76	4.64	3.5	0.006	0.88	0.0	0.05	13.23	0.00	2.284	10.02	0.35	11.1	88.9	0.0	-3.87	1.40	0.36	0.78	3.90	2439	321	3	0	0	0	0	logfile

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