The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8G8E | 29846 | 2023-04-19 | 2023-02-17 | 4.2 | 7.38 | 5.01 | 5.9 | 0.004 | 0.73 | 0.0 | 0.04 | 28.65 | 0.00 | 2.277 | 15.90 | 0.79 | 1.5 | 98.5 | 0.0 | 0.35 | 0.81 | 0.66 | — | 6.0 | 0.003 | 0.63 | 0.0 | 0.03 | 28.39 | 0.00 | 2.243 | 15.67 | 0.00 | 2.9 | 97.1 | 0.0 | -0.23 | 1.84 | 0.91 | 0.85 | — | 2464 | 140 | 3 | 64 | 0 | 0 | 0 | logfile |
✔ | 7US9 | 26729 | 2023-04-19 | 2022-04-23 | 3.8 | 3.84 | 3.64 | 3.9 | 0.015 | 1.58 | 0.0 | 0.11 | 7.31 | 0.01 | 2.489 | 3.45 | 0.00 | 2.3 | 97.7 | 0.0 | 1.07 | 0.59 | 0.74 | 4.43 | 3.8 | 0.003 | 0.73 | 0.0 | 0.07 | 13.17 | 0.01 | 2.282 | 8.38 | 0.00 | 4.7 | 95.3 | 0.0 | 0.27 | 1.46 | 0.60 | 0.77 | 2.97 | 1127 | 145 | 3 | 0 | 4 | 0 | 0 | logfile |
✔ | 8A06 | 15051 | 2023-04-19 | 2022-05-26 | 4.0 | 3.63 | 3.78 | 3.8 | 0.003 | 0.56 | 0.0 | 0.05 | 13.75 | 0.00 | 2.201 | 6.79 | 0.73 | 2.8 | 97.2 | 0.0 | -0.86 | 0.27 | 0.78 | — | 3.7 | 0.004 | 0.65 | 0.0 | 0.05 | 17.25 | 0.00 | 2.290 | 6.79 | 0.00 | 4.8 | 95.2 | 0.0 | -1.23 | 0.40 | 0.27 | 0.80 | — | 1185 | 147 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LiJ | 4054 | 2023-04-19 | 2016-07-14 | 4.2 | 3.63 | — | 4.2 | 0.009 | 2.92 | 4.0 | 0.17 | 15.82 | 0.01 | 2.249 | 25.64 | 0.00 | 10.7 | 89.3 | 0.0 | -6.36 | 0.85 | 0.76 | — | 3.8 | 0.005 | 1.18 | 0.0 | 0.04 | 10.31 | 0.00 | 2.148 | 15.12 | 0.00 | 32.0 | 68.0 | 0.0 | -5.66 | 1.48 | 0.86 | 0.78 | — | 761 | 152 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BC5 | 12139 | 2023-04-19 | 2020-12-18 | 3.1 | 3.06 | 3.11 | 3.1 | 0.005 | 1.05 | 0.0 | 0.05 | 15.92 | 0.01 | 2.314 | 7.83 | 0.76 | 8.2 | 91.8 | 0.0 | -5.64 | 0.23 | 0.62 | 0.92 | 3.0 | 0.003 | 0.72 | 0.0 | 0.04 | 17.04 | 0.00 | 2.243 | 14.42 | 0.76 | 7.5 | 92.5 | 0.0 | -2.75 | 1.30 | 0.23 | 0.58 | 0.92 | 1200 | 161 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JBS | 6478 | 2023-04-19 | 2015-10-13 | 2.9 | 3.04 | — | 3.2 | 0.010 | 1.32 | 0.0 | 0.06 | 8.67 | 0.01 | 2.510 | 0.00 | 0.00 | 2.9 | 97.1 | 0.0 | 0.51 | 0.21 | 0.76 | 4.15 | 3.0 | 0.003 | 0.61 | 0.0 | 0.04 | 18.11 | 0.00 | 2.225 | 5.17 | 3.95 | 1.7 | 98.3 | 0.0 | 0.99 | 1.75 | 0.21 | 0.81 | 3.63 | 1401 | 175 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W3T | 32293 | 2023-04-19 | 2021-11-26 | 3.59 | 2.49 | 3.54 | 2.2 | 0.004 | 0.73 | 0.0 | 0.05 | 14.39 | 0.01 | 2.259 | 8.96 | 0.00 | 4.6 | 95.4 | 0.0 | -2.83 | 0.76 | 0.75 | 4.00 | 2.2 | 0.003 | 0.64 | 0.0 | 0.05 | 16.79 | 0.00 | 2.191 | 11.71 | 0.62 | 4.6 | 95.4 | 0.0 | -2.89 | 0.34 | 0.77 | 0.75 | 3.46 | 1455 | 176 | 3 | 0 | 7 | 0 | 0 | logfile |
✔ | 6RiU | 4898 | 2023-04-19 | 2019-04-25 | 3.9 | 6.21 | 2.04 | 7.0 | 0.008 | 1.19 | 0.0 | 0.09 | 15.19 | 0.01 | 2.182 | 5.20 | 0.00 | 8.4 | 91.6 | 0.0 | -5.77 | 0.59 | 0.69 | 0.56 | 7.1 | 0.002 | 0.64 | 0.0 | 0.03 | 15.97 | 0.00 | 2.064 | 12.47 | 0.00 | 3.9 | 96.1 | 0.0 | -0.16 | 1.43 | 0.61 | 0.75 | 0.76 | 2882 | 182 | 2 | 0 | 0 | 0 | 1430 | logfile |
✔ | 6R23 | 4708 | 2023-04-19 | 2019-03-15 | 4.9 | 4.57 | — | 4.6 | 0.006 | 1.07 | 0.0 | 0.05 | 16.56 | 0.01 | 2.332 | 7.52 | 0.00 | 7.9 | 92.1 | 0.0 | -4.61 | 0.60 | 0.75 | — | 4.6 | 0.003 | 0.61 | 0.0 | 0.04 | 16.41 | 0.00 | 2.466 | 11.77 | 0.00 | 9.0 | 91.0 | 0.0 | -0.07 | 3.42 | 0.60 | 0.74 | — | 1518 | 182 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6C4H | 7340 | 2023-04-23 | 2018-01-12 | 3.1 | 3.33 | — | 3.3 | 0.011 | 1.20 | 1.0 | 0.11 | 16.63 | 0.05 | 1.913 | 7.67 | 6.80 | 5.3 | 94.7 | 0.0 | -2.61 | 0.43 | 0.85 | 3.61 | 3.3 | 0.008 | 0.92 | 0.0 | 0.04 | 15.55 | 0.01 | 1.783 | 7.67 | 1.36 | 5.8 | 94.2 | 0.0 | -2.30 | 0.39 | 0.39 | 0.85 | 4.75 | 15326 | 184 | 8 | 648 | 34 | 0 | 0 | logfile |
✔ | 7TPK | 26058 | 2023-04-19 | 2022-01-25 | 3.4 | 3.41 | — | 3.4 | 0.011 | 1.40 | 1.0 | 0.08 | 9.69 | 0.01 | 2.528 | 2.12 | 0.00 | 4.7 | 95.3 | 0.0 | -0.98 | 0.60 | 0.72 | 4.39 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 15.27 | 0.00 | 2.331 | 4.95 | 0.00 | 4.2 | 95.8 | 0.0 | -1.45 | 1.26 | 0.65 | 0.81 | 3.26 | 1484 | 194 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6X0V | 21985 | 2023-04-19 | 2020-05-17 | 4.5 | 4.37 | — | 4.4 | 0.003 | 0.62 | 1.0 | 0.04 | 11.58 | 0.00 | 2.285 | 15.16 | 4.48 | 3.5 | 96.0 | 0.5 | -2.45 | 0.40 | 0.74 | — | 4.4 | 0.002 | 0.49 | 0.0 | 0.04 | 12.98 | 0.00 | 2.224 | 17.83 | 0.00 | 5.0 | 95.0 | 0.0 | 2.29 | 1.20 | 0.40 | 0.76 | — | 1384 | 211 | 4 | 0 | 0 | 0 | 62 | logfile |
✔ | 7USB | 26731 | 2023-04-19 | 2022-04-23 | 3.1 | 3.28 | 3.18 | 3.3 | 0.013 | 1.72 | 0.0 | 0.11 | 10.69 | 0.01 | 2.590 | 1.61 | 1.39 | 5.5 | 94.5 | 0.0 | -0.28 | 0.59 | 0.76 | 5.40 | 3.3 | 0.005 | 0.80 | 0.0 | 0.05 | 13.73 | 0.00 | 2.361 | 5.78 | 0.69 | 5.5 | 94.5 | 0.0 | -1.74 | 0.61 | 0.61 | 0.84 | 5.05 | 1661 | 213 | 3 | 0 | 5 | 0 | 0 | logfile |
✔ | 6XTB | 10618 | 2023-04-19 | 2020-01-15 | 4.3 | 4.32 | — | 3.9 | 0.006 | 1.17 | 0.0 | 0.07 | 8.68 | 0.00 | 2.369 | 3.00 | 0.00 | 15.6 | 84.4 | 0.0 | -4.66 | 0.32 | 0.43 | — | 4.1 | 0.005 | 1.12 | 0.0 | 0.05 | 9.13 | 0.00 | 2.119 | 10.22 | 0.00 | 25.1 | 74.9 | 0.0 | -5.72 | 2.48 | 0.34 | 0.65 | — | 1161 | 235 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V22 | 31634 | 2023-04-19 | 2021-08-07 | 3.38 | 3.61 | — | 3.6 | 0.003 | 0.66 | 0.0 | 0.04 | 14.10 | 0.00 | 2.236 | 8.81 | 0.46 | 12.1 | 87.5 | 0.4 | -2.81 | 0.53 | 0.77 | 4.24 | 3.6 | 0.004 | 0.70 | 0.0 | 0.05 | 16.03 | 0.00 | 2.170 | 11.14 | 0.46 | 13.4 | 86.2 | 0.4 | -2.46 | 0.55 | 0.53 | 0.80 | 3.78 | 1958 | 240 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RSQ | 24677 | 2023-04-20 | 2021-08-11 | 3.8 | 4.03 | 3.73 | 4.1 | 0.008 | 0.80 | 0.0 | 0.05 | 12.74 | 0.00 | 2.360 | 4.01 | 2.88 | 3.0 | 97.0 | 0.0 | -0.64 | 0.63 | 0.68 | 1.39 | 4.1 | 0.003 | 0.53 | 0.0 | 0.03 | 15.41 | 0.00 | 2.381 | 3.76 | 0.48 | 3.0 | 97.0 | 0.0 | 2.46 | 1.83 | 0.64 | 0.71 | 1.77 | 3970 | 246 | 1 | 0 | 0 | 0 | 1958 | logfile |
✔ | 7JZU | 22574 | 2023-04-19 | 2020-09-02 | 3.1 | 3.26 | 3.10 | 3.3 | 0.015 | 1.34 | 0.0 | 0.08 | 9.69 | 0.01 | 2.509 | 0.78 | 0.00 | 3.3 | 96.7 | 0.0 | 0.23 | 0.69 | 0.76 | 4.15 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 15.06 | 0.00 | 2.208 | 5.19 | 0.98 | 3.3 | 96.7 | 0.0 | 0.42 | 1.61 | 0.69 | 0.80 | 3.94 | 1987 | 248 | 3 | 0 | 3 | 0 | 0 | logfile |
✔ | 8DM2 | 27524 | 2023-04-19 | 2022-07-08 | 2.91 | 3.71 | 2.85 | 3.6 | 0.007 | 1.02 | 0.0 | 0.07 | 12.99 | 0.01 | 2.362 | 4.12 | 0.44 | 2.5 | 97.5 | 0.0 | -0.51 | 0.57 | 0.66 | 2.14 | 3.6 | 0.003 | 0.70 | 0.0 | 0.05 | 16.70 | 0.00 | 2.278 | 8.96 | 1.78 | 5.0 | 95.0 | 0.0 | -0.88 | 1.72 | 0.61 | 0.74 | 3.47 | 2104 | 249 | 3 | 0 | 6 | 0 | 0 | logfile |
✔ | 7SRQ | 25401 | 2023-04-20 | 2021-11-08 | 2.7 | 2.17 | — | 1.9 | 0.008 | 0.80 | 0.0 | 0.05 | 13.54 | 0.01 | 2.296 | 8.67 | 1.50 | 2.8 | 97.2 | 0.0 | 0.29 | 0.70 | 0.72 | 4.55 | 2.7 | 0.004 | 0.76 | 0.0 | 0.04 | 15.44 | 0.00 | 2.264 | 8.93 | 3.50 | 3.2 | 96.8 | 0.0 | 0.20 | 0.48 | 0.72 | 0.77 | 3.78 | 1960 | 254 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6ZS5 | 11388 | 2023-04-19 | 2020-07-15 | 3.5 | 4.02 | 3.66 | 3.8 | 0.008 | 1.09 | 1.0 | 0.07 | 13.95 | 0.01 | 2.202 | 4.52 | 0.00 | 4.7 | 95.3 | 0.0 | -2.98 | 0.67 | 0.80 | 2.81 | 3.9 | 0.003 | 0.75 | 0.0 | 0.04 | 15.47 | 0.00 | 2.220 | 9.30 | 1.86 | 3.6 | 96.4 | 0.0 | -1.97 | 2.35 | 0.67 | 0.80 | 2.50 | 2036 | 257 | 4 | 0 | 7 | 0 | 0 | logfile |