Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RiE	4890	2022-12-21	2019-04-23	3.1	3.16	2.97	3.1	0.006	0.76	0.0	0.05	15.00	0.01	2.067	4.46	0.07	4.2	95.8	0.0	-3.21	0.80	0.85	3.51	3.1	0.004	0.55	0.0	0.04	16.03	0.00	1.405	8.01	0.12	3.6	96.4	0.0	-0.19	0.38	0.82	0.87	3.19	36583	4418	17	41	7	0	0	logfile
✔	6i2N	0333	2022-12-14	2018-11-01	3.3	3.45	3.33	3.4	0.007	0.97	0.0	0.05	11.09	0.01	2.323	2.82	0.00	6.0	94.0	0.0	-3.81	0.75	0.79	2.55	3.4	0.003	0.58	0.0	0.04	14.79	0.00	2.134	8.41	0.39	4.5	95.5	0.0	0.62	2.27	0.77	0.84	1.84	18970	2352	14	21	0	0	0	logfile
✔	6SKY	10231	2022-12-14	2019-08-16	2.8	2.95	—	3.0	0.009	0.69	0.0	0.05	13.80	0.00	2.077	5.12	3.63	4.2	95.8	0.0	-2.12	0.75	0.85	2.69	3.0	0.003	0.52	0.0	0.04	16.48	0.00	2.102	5.19	2.81	2.1	97.9	0.0	1.58	2.20	0.73	0.85	2.38	22348	2824	4	0	4	0	0	logfile
✔	6MPH	9189	2022-12-16	2018-10-06	3.8	4.28	—	3.9	0.006	0.79	0.0	0.05	12.56	0.01	2.286	6.16	6.01	5.3	94.6	0.2	-3.46	0.84	0.85	2.34	3.9	0.003	0.70	0.0	0.04	14.24	0.00	2.068	13.92	0.33	5.2	94.8	0.0	-1.06	0.76	0.84	0.85	2.02	32092	3843	72	0	155	0	0	logfile
✔	6MWQ	9277	2022-12-14	2018-10-30	3.0	3.33	2.89	3.1	0.001	0.36	0.0	0.04	4.66	0.00	2.321	4.19	0.13	11.0	87.5	1.5	-4.81	0.54	0.39	0.22	3.1	0.003	0.70	0.0	0.04	13.25	0.00	2.183	8.34	1.48	3.6	96.1	0.2	-1.09	1.31	0.77	0.86	1.70	22072	2873	8	0	0	0	0	logfile
✔	6N1V	9319	2022-12-19	2018-11-12	4.0	4.63	—	4.2	0.008	0.96	0.0	0.06	15.13	0.01	2.226	8.06	10.74	6.7	93.1	0.2	-2.97	0.79	0.72	—	4.2	0.003	0.69	0.0	0.05	14.86	0.00	2.129	13.02	0.29	6.9	93.0	0.1	-1.16	1.70	0.86	0.86	—	36498	4470	69	0	144	0	0	logfile
✔	5AN9	3145	2022-12-20	2015-09-06	3.3	3.29	—	3.3	0.007	1.22	5.0	0.10	17.04	0.01	1.192	3.57	2.32	9.1	88.0	2.9	-3.68	0.38	0.81	1.98	3.3	0.007	0.87	0.0	0.05	17.57	0.01	2.003	13.84	1.16	11.8	87.5	0.6	-2.88	1.53	0.40	0.81	1.34	39693	1905	11	1162	0	0	0	logfile
✘	5YKG	6833	2022-12-22	2017-10-14	4.57	4.68	4.39	4.4	0.005	0.71	4.0	0.04	13.41	0.01	2.245	13.43	7.90	4.2	95.6	0.1	-2.42	0.73	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	50868	6536	16	0	12	0	0	logfile
✔	6ME0	9105	2022-12-14	2018-09-05	3.6	3.74	—	3.6	0.010	1.16	0.0	0.05	17.63	0.01	1.531	13.75	0.00	11.8	88.2	0.0	-5.11	0.89	0.81	2.89	3.6	0.005	0.67	0.0	0.03	17.39	0.00	1.842	19.43	0.28	13.2	86.8	0.0	-2.26	1.22	0.89	0.82	2.07	21539	414	4	845	33	0	0	logfile
✔	6T9L	10415	2022-12-14	2019-10-28	3.6	3.74	3.53	3.6	0.002	0.47	0.0	0.03	22.54	0.00	2.136	7.14	0.07	1.1	98.9	0.0	-1.63	0.74	0.68	0.82	3.6	0.004	0.64	0.0	0.04	25.05	0.00	1.954	9.36	0.30	3.3	96.7	0.0	0.94	0.83	0.84	0.84	1.19	18157	1532	18	290	8	0	0	logfile
✔	5ANB	3146	2022-12-22	2015-09-06	4.1	4.11	—	4.1	0.008	1.31	6.0	0.10	18.54	0.01	1.245	5.13	4.33	13.0	83.9	3.1	-4.17	0.41	0.75	—	4.0	0.004	0.83	0.0	0.04	17.28	0.01	2.089	19.99	0.04	13.7	85.6	0.7	-3.60	0.89	0.40	0.72	—	48493	3025	12	1162	0	0	0	logfile
✔	6K15	9905	2022-12-14	2019-05-09	3.4	3.68	—	3.6	0.005	0.96	0.0	0.05	10.23	0.01	1.639	5.00	0.33	8.6	91.3	0.1	-4.21	0.74	0.78	2.17	3.6	0.003	0.68	0.0	0.04	14.97	0.00	2.132	10.19	0.21	8.1	91.9	0.0	-0.23	1.75	0.76	0.81	1.25	21486	2655	14	0	1	0	0	logfile
✔	6VPP	21315	2022-12-12	2020-02-04	4.4	5.69	—	5.4	0.005	0.96	0.0	0.05	15.79	0.01	2.087	11.75	0.30	5.2	94.7	0.1	-4.45	0.71	0.79	—	5.4	0.003	0.69	0.0	0.04	14.69	0.00	1.955	18.84	0.00	5.2	94.8	0.0	-1.01	1.72	0.70	0.79	—	9156	1164	5	1	2	0	0	logfile
✔	6GY6	0088	2022-12-14	2018-06-28	4.0	3.98	—	3.8	0.006	0.88	0.0	0.05	10.55	0.01	2.234	4.84	1.08	2.6	97.4	0.0	-4.40	0.90	0.84	—	3.8	0.003	0.65	0.0	0.04	14.61	0.00	2.139	11.29	0.27	2.0	98.0	0.0	2.55	0.93	0.90	0.85	—	72462	9139	26	0	0	0	0	logfile
✔	5ANC	3147	2022-12-21	2015-09-06	4.2	4.23	—	4.2	0.008	1.35	7.0	0.10	19.00	0.01	1.236	6.63	4.21	13.6	82.7	3.6	-4.33	0.41	0.74	—	4.2	0.004	0.83	0.0	0.04	17.25	0.01	2.031	20.61	0.00	14.5	84.5	1.0	-3.66	1.57	0.39	0.70	—	46807	2801	11	1162	0	0	0	logfile
✔	5VHY	8687	2022-12-15	2017-04-13	4.6	4.98	—	4.7	0.007	1.12	0.0	0.04	8.34	0.01	1.831	19.00	0.17	5.2	93.0	1.8	-1.87	0.77	0.64	—	4.7	0.003	0.64	0.0	0.04	11.47	0.00	2.141	13.97	0.00	4.0	95.7	0.3	0.76	5.51	0.84	0.84	—	27572	3484	10	0	8	0	0	logfile
✘	3JD6	6425	2022-12-21	2016-04-12	4.1	5.00	—	4.6	0.026	2.70	34.0	0.12	14.71	0.02	0.000	5.64	0.00	13.3	86.1	0.6	-3.14	0.59	0.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	45781	2839	17	0	0	0	22542	logfile
✔	6Kio	9996	2022-12-13	2019-07-19	3.94	4.22	—	3.9	0.035	3.43	48.0	0.22	17.77	0.04	2.231	11.34	8.39	18.6	74.1	7.3	-6.45	0.56	0.66	1.26	3.8	0.003	0.72	0.0	0.04	17.11	0.00	2.004	11.80	0.12	7.1	92.5	0.4	-1.30	1.67	0.65	0.77	1.34	15091	968	3	0	0	0	7442	logfile
✔	6ND1	0440	2022-12-12	2018-12-13	4.1	4.15	—	4.1	0.009	1.23	14.0	0.08	16.24	0.01	2.249	7.63	0.10	3.7	96.2	0.2	-3.89	0.60	0.82	—	4.1	0.003	0.70	0.0	0.04	14.75	0.00	2.085	7.69	0.00	3.6	96.4	0.0	0.48	0.70	0.59	0.81	—	9186	1179	6	0	0	0	0	logfile
✔	6AV9	7007	2022-12-12	2017-09-01	3.9	3.83	—	3.8	0.008	1.11	0.0	0.06	12.77	0.01	1.920	32.37	0.33	12.8	86.8	0.4	-4.62	0.58	0.80	2.42	3.8	0.004	0.93	0.0	0.05	16.01	0.00	2.138	16.79	0.87	11.0	88.8	0.3	-2.09	1.27	0.58	0.79	1.32	8673	1101	6	0	3	0	0	logfile

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