Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7S38	24819	2023-04-23	2021-09-04	3.3	3.17	3.25	3.1	0.008	0.99	0.0	0.05	15.52	0.01	2.233	2.62	0.08	4.2	95.8	0.0	-1.38	0.86	0.83	3.03	3.1	0.002	0.52	0.0	0.03	17.38	0.00	2.095	8.30	0.00	2.5	97.5	0.0	0.46	1.31	0.88	0.87	2.70	13987	1353	4	138	1	0	0	logfile
✔	7X1R	32947	2023-04-20	2022-02-24	3.9	3.98	—	3.9	0.007	0.75	0.0	0.05	14.08	0.00	2.205	9.01	0.25	2.3	97.7	0.0	-0.91	0.74	0.82	1.82	4.0	0.004	0.66	0.0	0.05	16.50	0.00	2.266	11.91	0.63	3.3	96.7	0.0	0.39	1.77	0.74	0.82	1.48	7608	970	4	0	4	0	0	logfile
✔	7BoX	30135	2023-04-24	2020-03-20	3.8	3.29	—	3.8	0.012	1.46	5.0	0.07	12.93	0.01	2.236	9.53	0.05	8.1	91.5	0.5	-4.94	0.78	0.81	2.90	3.7	0.003	0.73	0.0	0.04	17.01	0.00	2.158	11.25	0.60	7.4	92.6	0.0	-0.63	1.06	0.80	0.84	2.34	18618	2334	12	0	0	0	0	logfile
✔	7LYS	23600	2023-04-23	2021-03-08	3.05	2.55	3.08	3.1	0.003	0.54	0.0	0.04	17.65	0.00	1.976	5.82	0.17	0.0	100.0	0.0	-1.46	0.83	0.83	2.05	3.1	0.003	0.55	0.0	0.04	18.37	0.00	1.996	6.26	0.00	3.6	96.4	0.0	1.10	0.36	0.83	0.84	2.10	13573	669	4	89	0	0	6374	logfile
✔	7NJ7	12375	2023-04-28	2021-02-16	4.82	5.23	—	4.8	0.004	0.73	1.0	0.04	13.69	0.01	1.907	8.72	0.19	4.3	95.7	0.0	-0.72	0.74	0.46	—	4.9	0.004	0.66	0.0	0.04	13.68	0.00	1.834	21.16	0.06	5.5	94.5	0.0	-0.86	2.33	0.82	0.64	—	28818	1797	6	23	0	0	13868	logfile
✔	6UJC	20796	2023-04-21	2019-10-02	3.56	3.89	—	3.9	0.014	1.40	0.0	0.09	10.61	0.01	1.792	0.44	0.11	3.0	97.0	0.0	0.47	0.72	0.75	2.35	3.9	0.004	0.68	0.0	0.04	13.44	0.00	1.978	8.12	0.21	4.9	95.1	0.0	-0.22	0.75	0.75	0.79	2.12	9209	1184	11	0	23	0	0	logfile
✔	7F46	31444	2023-04-20	2021-06-17	4.79	5.15	—	3.3	0.006	0.84	0.0	0.05	13.38	0.01	2.218	12.18	0.00	8.9	91.1	0.0	-2.90	0.77	0.60	—	4.4	0.003	0.77	0.0	0.05	12.89	0.01	2.142	16.52	0.00	6.3	93.7	0.0	-2.00	1.56	0.79	0.62	—	6564	842	6	0	2	0	0	logfile
✔	6F36	4176	2023-04-20	2017-11-28	3.7	2.63	—	3.9	0.010	1.13	0.0	0.07	11.06	0.01	2.304	7.63	0.27	5.1	94.9	0.0	-5.92	0.82	0.70	1.42	3.8	0.004	0.75	0.0	0.04	14.86	0.00	2.160	13.70	0.66	3.7	96.3	0.0	-0.06	0.89	0.84	0.73	1.03	7453	1039	12	0	0	0	0	logfile
✔	3J79	2660	2023-04-25	2014-06-02	3.2	3.25	3.13	3.2	0.007	1.31	43.0	0.10	19.59	0.01	1.505	4.40	11.66	7.2	90.4	2.4	-1.45	0.53	0.71	0.94	3.2	0.003	0.64	0.0	0.04	17.82	0.01	1.892	13.81	0.62	5.4	94.1	0.5	-0.13	0.96	0.65	0.85	1.71	124514	6244	55	3460	168	0	0	logfile
✔	7CXR	30495	2023-04-20	2020-09-02	3.4	3.32	3.43	3.7	0.007	0.87	1.0	0.06	16.56	0.00	2.199	12.99	3.39	6.6	93.1	0.3	-2.27	0.52	0.54	1.33	3.6	0.003	0.75	0.0	0.04	18.18	0.00	2.283	11.73	0.00	4.1	95.9	0.0	1.92	1.57	0.59	0.62	1.16	5168	614	2	0	0	0	0	logfile
✘	7CFS	30346	2023-04-21	2020-06-28	3.56	3.72	—	3.7	0.008	0.94	0.0	0.06	15.94	0.01	1.835	5.64	0.60	5.9	94.1	0.0	-5.35	0.79	0.84	2.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9974	1278	6	0	10	0	0	logfile
✔	7ZZ5	15035	2023-04-20	2022-05-25	2.43	2.83	2.33	2.1	0.008	1.04	0.0	0.05	17.33	0.01	2.256	4.98	1.86	3.3	96.7	0.0	-1.00	0.89	0.88	3.98	2.1	0.004	0.58	0.0	0.04	17.12	0.00	2.183	9.12	1.60	3.3	96.7	0.0	0.44	0.32	0.89	0.89	3.82	3633	461	1	0	2	0	0	logfile
✔	7WLC	32581	2023-04-20	2022-01-13	4.0	4.24	—	4.1	0.003	0.70	0.0	0.04	13.71	0.00	2.198	15.62	0.00	6.1	93.9	0.0	-1.35	0.71	0.77	—	4.2	0.004	0.80	0.0	0.05	16.00	0.00	2.188	18.56	0.56	8.3	91.7	0.0	-1.72	0.54	0.72	0.78	—	3307	430	3	0	0	0	0	logfile
✘	7X26	32959	2023-04-20	2022-02-25	3.685	3.39	—	3.9	0.011	1.46	1.0	0.09	14.53	0.01	2.186	10.90	9.27	16.2	81.1	2.7	-3.21	0.68	0.74	2.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4828	641	3	0	0	0	0	logfile
✔	7L1F	23109	2023-04-21	2020-12-14	3.89	2.82	—	2.2	0.008	1.36	3.0	0.08	13.38	0.01	2.323	3.11	0.00	6.6	93.4	0.0	-4.38	0.72	0.70	2.25	2.4	0.005	0.78	0.0	0.05	15.43	0.00	2.040	14.97	0.56	7.4	92.6	0.0	-1.44	1.22	0.74	0.71	1.77	8825	1009	5	31	4	0	0	logfile
✔	7oU0	13071	2023-04-21	2021-06-10	3.8	3.58	—	3.7	0.013	1.77	0.0	0.11	15.37	0.01	1.798	4.10	0.09	1.5	98.5	0.0	2.70	0.81	0.81	1.19	3.7	0.004	0.70	0.0	0.04	17.41	0.00	1.923	12.69	0.46	2.5	97.5	0.1	0.91	2.14	0.82	0.84	1.62	10335	1313	4	0	6	0	0	logfile
✔	8iD9	35360	2023-04-20	2023-02-12	3.0	3.00	—	2.9	0.005	0.73	0.0	0.05	13.95	0.02	2.182	9.55	0.13	2.7	97.3	0.0	-0.21	0.88	0.84	3.28	2.9	0.005	0.65	0.0	0.04	14.91	0.00	2.166	6.84	1.56	4.0	96.0	0.0	0.29	1.80	0.89	0.87	3.28	7996	1095	5	0	1	0	0	logfile
✔	7Z2A	14459	2023-04-22	2022-02-26	4.3	4.49	—	4.3	0.012	1.59	2.0	0.09	14.60	0.01	0.925	8.38	0.48	2.8	97.0	0.2	0.00	0.80	0.62	—	4.2	0.003	0.58	0.0	0.04	14.26	0.00	1.831	54.36	0.00	3.8	96.1	0.1	0.72	1.80	0.90	0.80	—	12244	1201	5	0	4	0	2765	logfile
✔	3JB7	6404	2023-04-23	2015-08-03	4.0	4.13	—	4.1	0.007	0.76	3.0	0.05	10.78	0.00	0.793	10.58	1.13	3.9	95.9	0.2	-2.17	0.76	0.85	—	4.1	0.003	0.69	0.0	0.04	15.29	0.00	2.179	11.30	0.53	2.7	97.2	0.1	0.16	0.89	0.78	0.85	—	14176	1733	8	11	3	0	0	logfile
✔	7D69	30591	2023-04-21	2020-09-29	3.57	3.34	—	3.6	0.009	0.88	0.0	0.05	28.97	0.01	2.062	19.76	0.00	5.2	94.8	0.0	-1.18	0.78	0.80	2.26	3.6	0.004	0.61	0.0	0.04	28.62	0.00	2.102	15.84	0.16	3.5	96.5	0.0	1.62	1.16	0.77	0.79	1.48	10857	727	10	250	0	0	0	logfile

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