Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7DGD	30671	2022-04-05	2020-11-11	3.96	4.40	—	4.2	0.015	2.08	10.0	0.12	15.16	0.01	1.930	4.75	3.87	9.2	89.9	0.9	-4.26	0.61	0.53	0.38	4.2	0.003	0.84	0.0	0.04	16.17	0.00	2.164	16.27	0.37	7.9	92.0	0.1	-1.66	1.90	0.69	0.67	0.58	12381	1572	2	0	0	0	0	logfile
✔	7F5B	31464	2022-04-05	2021-06-21	3.9	4.19	—	4.1	0.004	0.80	1.0	0.05	14.64	0.00	2.110	14.89	0.18	8.7	91.2	0.1	-1.83	0.69	0.79	1.36	4.1	0.004	0.73	0.0	0.04	16.72	0.00	2.148	13.52	0.12	9.0	91.0	0.0	-1.41	0.45	0.69	0.80	0.91	15328	1921	11	0	14	0	0	logfile
✔	7RTV	24690	2022-04-04	2021-08-15	3.96	4.06	—	4.1	0.003	0.68	0.0	0.04	16.49	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.87	0.0	0.05	18.50	0.00	2.197	15.60	0.32	3.0	97.0	0.0	2.57	0.49	0.42	0.64	0.60	2881	366	3	0	6	0	0	logfile
✔	7L2M	23133	2022-04-05	2020-12-17	3.84	4.16	3.86	4.1	0.007	0.78	0.0	0.04	11.75	0.00	2.196	2.25	0.75	5.3	94.7	0.0	0.06	0.57	0.80	1.48	4.1	0.003	0.65	0.0	0.04	15.91	0.01	2.187	8.82	0.23	6.2	93.8	0.0	0.40	0.82	0.56	0.81	0.94	15981	1934	10	0	7	0	0	logfile
✔	7L2i	23129	2022-04-06	2020-12-17	3.7	3.97	3.73	3.9	0.012	0.90	0.0	0.20	12.59	0.01	2.137	2.01	0.75	7.8	92.2	0.0	-0.84	0.59	0.80	1.50	3.9	0.010	1.02	1.0	0.04	15.56	0.01	2.115	11.89	0.32	7.5	92.4	0.0	-0.26	1.83	0.57	0.80	0.67	17432	2124	8	0	4	0	0	logfile
✔	7L2K	23131	2022-04-05	2020-12-17	3.89	4.17	3.95	4.1	0.008	0.82	0.0	0.04	11.27	0.01	2.007	2.61	0.46	6.6	93.2	0.2	-0.05	0.50	0.73	1.33	4.1	0.014	1.25	2.0	0.04	15.92	0.00	1.686	21.13	0.57	8.0	92.0	0.0	0.19	1.43	0.50	0.73	1.04	15998	1976	4	0	0	0	0	logfile
✔	7L2o	23135	2022-04-05	2020-12-17	3.64	3.93	3.68	3.9	0.010	0.89	0.0	0.05	12.84	0.00	1.989	3.56	1.87	5.0	95.0	0.0	-0.84	0.54	0.78	2.34	3.9	0.004	0.72	0.0	0.04	16.65	0.01	2.145	11.10	0.76	7.3	92.7	0.0	0.26	0.90	0.54	0.78	1.48	15800	1920	8	0	4	0	0	logfile
✘	7BKD	12210	2022-04-07	2021-01-15	3.0	2.42	—	2.5	0.006	0.83	6.0	0.06	14.30	0.01	2.118	9.40	1.26	5.5	94.5	0.1	-0.29	0.60	0.80	3.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24799	3177	18	0	26	0	0	logfile
✔	7L2J	23130	2022-04-06	2020-12-17	3.66	3.92	3.68	3.9	0.007	1.12	0.0	0.28	11.67	0.00	2.074	2.22	0.16	4.9	95.1	0.0	0.68	0.58	0.79	2.07	3.9	0.003	0.76	0.0	0.04	15.87	0.00	2.050	9.64	0.16	5.4	94.6	0.0	0.45	1.83	0.57	0.80	1.42	17336	2116	8	0	4	0	0	logfile
✔	7MQ9	23937	2022-04-23	2021-05-05	3.87	3.90	3.94	3.7	0.003	0.62	0.0	0.04	14.37	0.01	1.260	5.22	0.04	2.0	98.0	0.0	0.25	0.80	0.75	1.95	3.7	0.003	0.58	0.0	0.04	15.22	0.00	1.099	7.74	0.15	2.8	97.2	0.0	1.34	1.21	0.80	0.76	1.80	223184	24993	83	1780	1525	0	0	logfile
✔	7LB6	23264	2022-04-09	2021-01-07	3.16	3.80	—	3.5	0.004	0.56	0.0	0.04	13.24	0.00	2.112	10.46	0.00	2.3	97.7	0.0	-1.06	0.90	0.87	2.63	3.5	0.013	0.80	0.0	0.05	14.81	0.00	2.067	12.96	3.95	5.7	94.3	0.0	0.45	0.99	0.91	0.90	2.80	47760	6276	24	0	0	0	0	logfile
✔	7V6Y	31753	2022-04-04	2021-08-20	3.5	3.75	—	3.8	0.014	1.83	9.0	0.13	15.85	0.01	2.258	12.19	11.06	5.3	94.5	0.2	0.59	0.59	0.74	1.29	3.8	0.003	0.67	0.0	0.04	16.11	0.01	2.216	8.17	0.57	4.8	95.2	0.0	0.79	1.23	0.63	0.76	1.86	7484	990	3	0	8	0	0	logfile
✔	7RTM	24683	2022-04-04	2021-08-13	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9161	1142	6	0	12	0	0	logfile
✔	7V6Z	31754	2022-04-04	2021-08-20	3.64	3.89	—	3.9	0.012	1.66	6.0	0.11	14.37	0.01	2.282	9.74	10.76	3.2	96.5	0.3	1.70	0.64	0.71	1.36	3.8	0.004	0.75	0.0	0.04	15.09	0.01	2.221	12.91	1.01	3.8	96.1	0.1	0.79	1.03	0.64	0.73	1.31	7082	1008	3	0	6	0	0	logfile
✔	7FG2	31574	2022-04-04	2021-07-25	4.4	3.87	—	3.9	0.007	1.13	0.0	0.05	14.43	0.01	2.053	32.59	0.19	17.8	81.7	0.4	-3.95	0.38	0.65	—	3.9	0.003	0.77	0.0	0.05	14.71	0.00	2.116	18.54	0.00	13.7	86.0	0.3	-2.76	0.71	0.37	0.63	—	9342	1202	2	0	0	0	0	logfile
✔	7FiH	31597	2022-04-05	2021-07-31	3.2	2.63	—	3.5	0.006	0.83	1.0	0.05	14.14	0.00	1.962	8.33	0.17	3.3	96.6	0.1	-0.18	0.75	0.71	1.63	3.4	0.010	1.19	1.0	0.04	16.39	0.01	1.844	16.61	0.00	3.6	96.4	0.0	0.14	1.25	0.78	0.77	2.19	10853	1381	7	0	1	0	0	logfile
✔	7Fii	31598	2022-04-05	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.52	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	4.1	0.003	0.57	0.0	0.04	9.50	0.00	2.272	5.60	0.00	3.6	96.4	0.0	1.07	0.67	0.66	0.75	—	8765	1522	6	0	0	0	0	logfile
✔	7MKi	23895	2022-04-08	2021-04-23	3.5	3.43	3.54	3.5	0.019	0.77	0.0	0.06	16.91	0.00	2.170	6.42	5.35	7.1	92.8	0.0	-1.84	0.68	0.80	2.21	3.5	0.004	0.66	0.0	0.04	17.13	0.01	1.957	9.23	0.10	6.2	93.8	0.0	-1.40	0.22	0.69	0.79	1.89	30919	3676	10	96	6	0	0	logfile
✔	7MKE	23893	2022-04-07	2021-04-23	3.7	4.27	3.78	4.0	0.022	0.87	0.0	0.07	17.32	0.01	2.077	8.96	7.42	8.8	91.1	0.1	-2.11	0.88	0.86	1.39	4.0	0.004	0.69	0.0	0.04	17.21	0.00	1.956	14.06	0.06	7.7	92.2	0.1	-1.54	1.08	0.88	0.86	1.17	30641	3675	11	81	7	0	0	logfile
✔	7L2P	23136	2022-04-06	2020-12-17	2.6	2.86	2.54	2.9	0.006	1.29	0.0	0.27	13.15	0.00	2.080	1.42	0.76	6.5	93.4	0.1	0.13	0.60	0.79	3.53	2.9	0.004	0.71	0.0	0.04	16.80	0.00	2.177	7.79	1.47	6.1	93.9	0.0	1.06	3.17	0.60	0.83	3.41	18448	2234	8	0	9	0	0	logfile

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