Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5X1G	6701	2022-07-02	2017-01-25	4.5	7.89	—	37.0	0.008	1.42	0.0	0.05	10.05	0.01	2.345	27.78	0.00	6.9	93.1	0.0	-2.75	0.00	0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	155	31	1	0	0	0	0	logfile
✔	6R87	4753	2022-07-06	2019-03-31	3.4	3.50	—	3.4	0.012	1.28	1.0	0.07	17.19	0.01	0.981	6.06	0.66	8.3	91.4	0.3	-3.94	0.82	0.85	3.15	3.4	0.005	0.76	1.0	0.04	16.93	0.01	1.746	15.30	0.59	7.4	92.4	0.2	-1.48	1.24	0.83	0.86	2.28	135255	7197	50	3671	41	0	0	logfile
✔	6R84	4751	2022-07-07	2019-03-31	3.6	3.57	—	3.5	0.009	1.15	1.0	0.06	16.91	0.01	1.501	5.89	0.51	8.2	91.4	0.4	-3.93	0.79	0.81	2.51	3.5	0.009	0.87	0.0	0.05	17.20	0.01	1.882	15.68	0.89	8.8	91.0	0.2	-1.67	1.64	0.80	0.83	1.73	138804	7644	51	3671	45	0	0	logfile
✔	6JQ0	9872	2022-07-05	2019-03-28	3.54	4.12	—	4.0	0.007	1.21	0.0	0.06	16.27	0.01	2.235	4.90	0.63	13.0	86.5	0.5	-5.59	0.69	0.85	1.20	4.0	0.006	0.91	0.0	0.05	17.48	0.01	2.051	11.50	0.83	13.5	86.2	0.3	-2.43	0.53	0.66	0.83	1.09	26917	3323	13	0	20	0	0	logfile
✔	6UQK	20849	2022-07-08	2019-10-20	3.77	4.46	4.11	4.3	0.003	0.53	0.0	0.04	9.91	0.00	2.196	0.22	0.00	5.0	95.0	0.0	-1.84	0.74	0.78	1.71	4.3	0.004	0.60	0.0	0.04	12.65	0.00	2.253	4.30	0.45	7.4	92.6	0.0	1.18	0.61	0.75	0.81	1.89	51567	8032	8	0	188	0	0	logfile
✔	6U2L	20623	2022-07-11	2019-08-20	2.83	2.89	2.94	2.9	0.009	1.02	0.0	0.06	9.92	0.01	2.351	3.26	0.19	7.1	92.9	0.0	-3.75	0.78	0.84	3.92	2.9	0.003	0.70	0.0	0.04	15.72	0.01	2.100	7.01	2.61	5.9	94.1	0.0	-0.51	0.70	0.80	0.86	3.03	153756	19616	64	0	96	0	0	logfile
✔	6R86	4752	2022-07-06	2019-03-31	3.4	3.39	—	3.4	0.007	1.07	1.0	0.06	16.69	0.01	2.061	4.62	0.39	7.5	92.2	0.4	-4.05	0.77	0.84	3.15	3.4	0.003	0.68	0.0	0.04	16.58	0.00	1.939	11.08	0.49	7.7	92.1	0.2	-1.26	0.54	0.77	0.84	2.39	132446	7198	49	3539	41	0	0	logfile
✔	5ND9	3625	2022-07-07	2017-03-07	3.7	3.83	—	3.7	0.011	1.19	1.0	0.06	15.82	0.01	0.889	9.23	1.12	19.3	80.1	0.6	-5.81	0.76	0.77	1.23	3.7	0.006	0.77	1.0	0.03	15.61	0.01	1.820	18.87	0.32	11.8	88.1	0.1	-3.05	1.29	0.78	0.81	0.93	141051	5461	52	4569	0	0	0	logfile
✔	5ND8	3624	2022-07-07	2017-03-07	3.7	3.81	—	3.7	0.009	1.03	1.0	0.05	14.85	0.01	1.019	7.77	0.73	17.3	82.1	0.6	-5.61	0.77	0.77	1.17	3.7	0.006	0.79	2.0	0.04	15.46	0.01	1.610	20.29	0.35	11.7	88.2	0.1	-2.92	1.28	0.80	0.82	1.26	141043	5462	52	4568	0	0	0	logfile
✔	6P7M	20266	2022-07-04	2019-06-06	3.0	3.31	3.09	3.3	0.006	0.63	0.0	0.05	14.13	0.00	2.043	8.02	0.00	5.6	94.4	0.0	-3.37	0.72	0.84	3.74	3.3	0.006	0.63	0.0	0.05	16.36	0.00	1.999	8.87	1.90	5.0	95.0	0.0	-0.24	1.00	0.72	0.83	3.27	10141	1168	4	26	2	0	0	logfile
✘	6P7N	20267	2022-07-07	2019-06-06	4.9	9.02	6.14	4.9	0.002	0.53	0.0	0.04	14.46	0.00	2.152	6.68	1.33	5.6	94.4	0.0	-3.30	0.81	0.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20356	2352	10	52	4	0	0	logfile
✔	6MUV	9257	2022-07-04	2018-10-23	3.8	4.21	3.84	4.1	0.008	1.22	6.0	0.07	14.93	0.01	2.233	7.37	1.10	9.1	90.7	0.1	-3.64	0.79	0.81	1.15	4.1	0.005	0.80	0.0	0.05	16.73	0.00	1.563	17.72	0.20	5.6	94.4	0.0	-0.56	0.74	0.78	0.81	1.01	71112	8796	42	0	0	0	0	logfile
✔	6U2J	20620	2022-07-04	2019-08-20	2.37	2.47	2.57	2.4	0.007	0.89	0.0	0.06	10.08	0.01	2.320	4.25	0.41	4.8	95.2	0.0	-3.36	0.79	0.83	4.12	2.4	0.003	0.68	0.0	0.04	14.56	0.00	2.200	7.76	2.25	3.5	96.5	0.0	0.06	0.67	0.80	0.85	3.80	71744	9200	32	0	48	0	0	logfile
✔	6T9J	10413	2022-07-06	2019-10-28	3.4	3.31	3.25	3.2	0.008	1.06	0.0	0.06	15.11	0.01	2.256	5.54	0.90	8.0	92.0	0.0	-4.45	0.80	0.82	2.32	3.2	0.003	0.74	0.0	0.04	16.26	0.00	2.096	10.82	0.33	7.7	92.3	0.0	-0.37	1.21	0.80	0.83	1.77	29550	3617	3	0	0	0	0	logfile
✔	6T9K	10414	2022-07-04	2019-10-28	3.3	3.35	3.36	3.3	0.005	0.92	0.0	0.05	15.57	0.01	2.247	5.90	0.43	7.1	92.8	0.1	-4.36	0.71	0.74	1.91	3.3	0.016	1.43	3.0	0.05	16.90	0.01	1.980	15.79	0.14	7.3	92.6	0.1	-1.66	1.15	0.73	0.77	1.85	19241	2426	11	0	0	0	0	logfile
✔	6MUX	9259	2022-07-03	2018-10-23	3.9	4.13	3.88	4.0	0.009	1.22	0.0	0.07	15.13	0.01	2.149	7.42	0.80	11.0	88.9	0.2	-4.69	0.77	0.82	1.35	4.0	0.007	0.91	2.0	0.04	17.22	0.00	1.668	16.04	0.26	6.2	93.8	0.0	-1.36	3.98	0.78	0.82	1.02	60284	7501	35	0	0	0	0	logfile
✘	6UoX	20834	2022-07-03	2019-10-15	4.02	4.28	—	4.1	0.010	1.17	1.0	0.08	11.80	0.01	2.461	0.89	0.00	8.2	91.8	0.0	-4.01	0.66	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9138	1161	1	0	14	0	0	logfile
✔	6U7K	20672	2022-07-05	2019-09-03	3.14	2.37	3.18	3.3	0.017	2.29	62.0	0.27	13.62	0.03	1.341	3.78	2.66	5.3	94.7	0.0	-1.38	0.78	0.79	4.46	3.3	0.004	0.66	0.0	0.05	14.37	0.00	2.227	6.59	0.47	3.1	96.8	0.1	-0.22	0.59	0.79	0.82	3.49	25515	3192	6	0	81	0	0	logfile
✔	6o00	0564	2022-07-06	2019-02-14	4.18	4.51	—	4.3	0.005	0.72	0.0	0.04	14.22	0.00	2.087	4.70	0.69	4.6	95.4	0.0	-3.33	0.67	0.77	—	4.2	0.004	0.58	0.0	0.03	13.25	0.00	1.953	9.56	0.00	4.2	95.8	0.0	1.31	2.18	0.68	0.78	—	31470	1878	6	0	0	0	15714	logfile
✔	6FKH	4271	2022-07-07	2018-01-24	4.2	4.29	4.16	4.2	0.015	1.45	28.0	0.09	11.91	0.01	0.343	62.35	0.15	3.9	96.0	0.1	-0.16	0.63	0.67	—	4.2	0.004	0.79	0.0	0.04	13.72	0.01	1.890	19.11	0.07	4.1	95.8	0.1	-0.13	1.61	0.69	0.79	—	39231	5201	31	0	10	0	0	logfile

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