Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JMF	22392	2021-10-04	2020-07-31	4.5	5.06	—	4.7	0.005	0.98	0.0	0.05	10.23	0.01	1.373	8.03	0.36	11.2	88.6	0.2	-4.91	0.54	0.27	—	4.5	0.003	0.70	0.0	0.04	11.33	0.00	2.065	15.29	0.00	9.5	90.5	0.0	-1.51	1.59	0.72	0.49	—	120756	13500	12	0	3608	0	0	logfile
✔	6VWi	21417	2021-10-04	2020-02-19	3.7	4.08	—	3.9	0.007	0.87	0.0	0.05	14.85	0.01	2.298	4.30	1.97	11.9	88.1	0.0	-2.44	0.78	0.73	1.55	3.9	0.004	0.67	0.0	0.04	15.64	0.00	1.982	11.33	0.84	8.7	91.2	0.1	-2.02	1.09	0.78	0.74	1.65	12752	800	5	0	4	0	6283	logfile
✔	6XZC	10658	2021-10-04	2020-02-03	3.37	3.56	3.37	3.6	0.004	0.63	0.0	0.04	12.50	0.01	2.323	2.10	3.06	1.7	98.3	0.0	-1.92	0.66	0.74	0.86	3.6	0.003	0.58	0.0	0.04	15.28	0.01	2.218	5.04	0.00	0.8	99.2	0.0	5.15	1.08	0.75	0.86	0.97	13279	1694	7	0	0	0	0	logfile
✔	6oJQ	20092	2021-10-05	2019-04-12	3.67	3.91	—	3.8	0.008	0.78	0.0	0.04	10.32	0.00	2.000	3.54	0.00	4.0	96.0	0.0	-3.02	0.57	0.74	2.96	3.8	0.003	0.53	0.0	0.04	12.96	0.00	1.918	8.19	0.10	3.5	96.5	0.0	-0.53	2.74	0.66	0.82	3.08	18055	1164	5	0	4	0	8878	logfile
✘	6ZTL	11419	2021-10-04	2020-07-20	3.5	3.59	3.62	3.5	0.013	0.99	0.0	0.05	16.34	0.02	0.185	14.00	8.89	7.5	92.2	0.3	-3.13	0.82	0.84	1.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	173036	8895	76	4799	444	0	28	logfile
✔	6TNU	10537	2021-10-09	2019-12-10	3.1	3.21	—	3.0	0.009	0.94	0.0	0.06	16.94	0.01	1.809	6.91	0.10	10.0	89.9	0.1	-4.10	0.87	0.84	2.23	3.0	0.003	0.71	0.0	0.04	17.07	0.01	1.954	15.49	0.60	7.7	92.3	0.0	-1.35	1.23	0.88	0.86	1.87	204962	11498	91	5391	9	0	0	logfile
✔	6TB3	10431	2021-10-09	2019-10-31	2.8	3.06	—	2.8	0.006	0.85	1.0	0.05	16.01	0.01	1.794	2.67	0.28	6.8	93.1	0.1	-2.81	0.91	0.90	3.41	2.8	0.003	0.67	1.0	0.04	16.67	0.01	1.873	11.99	2.40	6.3	93.7	0.0	-0.57	1.19	0.91	0.91	2.70	205032	11472	104	5351	335	0	0	logfile
✔	6S6L	10103	2021-10-03	2019-07-03	3.1	2.99	2.95	2.9	0.014	1.12	0.0	0.07	9.31	0.01	2.263	5.39	0.16	5.3	94.7	0.0	-2.85	0.39	0.65	3.67	2.9	0.005	0.70	0.0	0.05	12.35	0.01	2.151	8.95	0.08	4.4	95.6	0.0	-0.80	0.59	0.40	0.67	3.00	11587	1510	3	0	0	0	0	logfile
✔	6U5J	20647	2021-10-03	2019-08-27	3.5	3.54	—	3.5	0.005	0.71	0.0	0.05	12.52	0.01	2.267	5.70	3.03	7.7	92.3	0.0	-5.32	0.58	0.84	2.67	3.5	0.006	0.75	0.0	0.04	15.86	0.00	1.606	11.93	0.13	6.7	93.3	0.0	-1.58	0.72	0.59	0.84	2.03	59616	7878	24	0	0	0	0	logfile
✔	6U5K	20648	2021-10-03	2019-08-27	3.5	3.54	—	3.5	0.005	0.78	0.0	0.05	12.14	0.01	2.210	5.85	3.00	7.0	93.0	0.0	-5.23	0.53	0.83	2.34	3.5	0.005	0.70	0.0	0.05	14.98	0.00	1.968	11.35	0.56	7.2	92.8	0.0	-1.48	1.24	0.52	0.84	1.98	110106	14520	54	0	0	0	0	logfile
✔	6X2i	22008	2021-10-27	2020-05-20	2.87	3.18	—	3.1	0.010	0.84	0.0	0.06	10.74	0.01	2.129	11.83	0.43	2.7	97.3	0.0	-2.12	0.78	0.88	5.57	3.1	0.004	0.63	0.0	0.04	15.13	0.00	2.043	8.33	2.99	3.3	96.7	0.0	-0.87	0.55	0.78	0.89	4.90	259740	32280	60	0	0	0	0	logfile
✘	7CF9	30343	2021-10-04	2020-06-24	4.7	4.24	5.21	4.0	0.006	1.23	0.0	0.06	16.02	0.01	1.538	5.43	1.67	6.2	93.7	0.1	-4.86	0.79	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	116104	14416	12	0	1820	0	0	logfile
✔	7C7A	30297	2021-10-05	2020-05-24	2.8	3.32	—	3.1	0.002	0.58	0.0	0.04	14.30	0.00	2.157	8.77	0.04	5.9	94.0	0.1	-2.84	0.79	0.71	0.74	3.1	0.009	0.88	0.0	0.04	16.50	0.01	2.004	12.22	2.79	6.5	93.5	0.0	-0.34	0.96	0.85	0.82	1.26	27500	2519	16	339	4	0	0	logfile
✔	6ZNL	11313	2021-10-03	2020-07-06	3.8	4.07	3.64	3.8	0.014	1.87	3.0	0.09	14.11	0.00	1.790	2.71	0.02	5.8	94.0	0.2	-2.54	0.78	0.70	1.46	3.8	0.005	0.81	1.0	0.04	15.72	0.00	1.823	10.98	0.17	3.7	96.3	0.1	0.68	1.61	0.86	0.84	1.57	52864	7001	34	0	13	0	0	logfile
✔	7CN9	30419	2021-10-05	2020-07-30	4.7	4.78	—	4.7	0.010	1.16	0.0	0.07	15.31	0.01	1.927	46.00	2.39	21.4	77.5	1.1	-5.89	0.53	0.74	—	4.7	0.003	0.79	0.0	0.05	13.26	0.01	2.109	17.62	0.00	11.3	88.6	0.1	-2.91	1.41	0.50	0.71	—	24052	3058	19	0	56	0	0	logfile
✔	6VL6	21231	2021-10-05	2020-01-22	4.6	5.00	4.54	4.6	0.019	1.46	0.0	0.09	11.38	0.01	2.431	0.28	0.00	0.9	99.1	0.0	0.45	0.87	0.83	—	4.6	0.004	0.66	0.0	0.04	13.00	0.00	2.211	18.43	0.00	2.2	97.8	0.0	1.57	2.01	0.81	0.75	—	21504	2640	24	0	0	0	0	logfile
✔	6X2K	22010	2021-10-27	2020-05-20	2.88	3.22	—	3.2	0.011	1.00	60.0	0.07	9.90	0.01	2.052	12.92	0.84	4.2	95.6	0.2	-2.00	0.74	0.88	5.58	3.2	0.003	0.65	0.0	0.04	15.27	0.01	2.145	8.35	3.56	4.2	95.8	0.0	-1.06	1.93	0.74	0.88	4.55	259200	32820	60	0	0	0	0	logfile
✔	6VFK	21185	2021-10-06	2020-01-05	4.25	4.39	4.20	4.3	0.021	1.41	0.0	0.09	10.30	0.01	2.389	0.32	0.00	1.3	98.7	0.0	2.59	0.84	0.81	—	4.2	0.003	0.56	0.0	0.04	13.15	0.00	2.189	9.10	0.03	1.6	98.2	0.2	4.36	1.08	0.84	0.83	—	37032	4764	24	0	0	0	0	logfile
✔	6XM3	22254	2021-10-05	2020-06-29	2.9	3.02	2.92	3.0	0.012	1.01	3.0	0.07	14.30	0.01	2.233	3.34	0.66	7.4	92.5	0.2	-4.38	0.66	0.86	3.27	3.0	0.003	0.61	0.0	0.04	15.78	0.00	2.135	5.81	1.38	4.7	95.3	0.0	-0.81	0.46	0.71	0.88	2.86	25384	3143	23	0	60	0	0	logfile
✔	6ZU1	11426	2021-10-04	2020-07-21	3.0	2.64	3.07	2.9	0.013	1.11	0.0	0.06	16.30	0.02	1.042	6.27	5.10	5.8	93.5	0.7	-2.13	0.81	0.86	2.82	3.0	0.002	0.63	0.0	0.03	15.69	0.01	1.227	10.06	3.15	3.6	96.4	0.0	-0.03	2.18	0.81	0.86	2.19	172846	8886	79	4793	491	0	0	logfile

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