The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3JAE | 6345 | 2022-12-13 | 2015-06-08 | 3.9 | 2.88 | — | 3.5 | 0.006 | 1.25 | 0.0 | 0.05 | 9.25 | 0.01 | 2.202 | 13.89 | 0.00 | 0.9 | 99.1 | 0.0 | -1.69 | 0.70 | 0.74 | 1.87 | 3.2 | 0.003 | 0.85 | 0.0 | 0.04 | 13.60 | 0.00 | 2.000 | 16.30 | 0.08 | 2.9 | 97.1 | 0.0 | 0.14 | 1.48 | 0.72 | 0.82 | 1.52 | 12825 | 1690 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 3JAF | 6346 | 2022-12-13 | 2015-06-08 | 3.8 | 2.26 | — | 3.8 | 0.025 | 1.93 | 0.0 | 0.10 | 10.09 | 0.01 | 2.134 | 19.02 | 0.70 | 0.6 | 99.4 | 0.0 | -0.82 | 0.69 | 0.71 | 1.52 | 3.8 | 0.003 | 1.04 | 0.0 | 0.05 | 13.94 | 0.00 | 2.222 | 18.49 | 0.28 | 2.2 | 97.8 | 0.0 | 0.52 | 1.36 | 0.72 | 0.81 | 1.69 | 13865 | 1710 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 3JAK | 6349 | 2022-12-21 | 2015-06-16 | 3.3 | 3.49 | — | 3.6 | 0.009 | 1.40 | 0.0 | 0.08 | 15.62 | 0.01 | 2.010 | 2.33 | 1.12 | 2.2 | 97.7 | 0.1 | 0.27 | 0.64 | 0.85 | 2.90 | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 16.63 | 0.00 | 1.943 | 6.34 | 0.22 | 1.9 | 98.1 | 0.0 | 1.11 | 0.73 | 0.61 | 0.87 | 2.64 | 43066 | 5428 | 26 | 0 | 18 | 0 | 0 | logfile |
✔ | 3JAL | 6350 | 2022-12-21 | 2015-06-16 | 3.5 | 3.70 | — | 3.6 | 0.009 | 1.46 | 5.0 | 0.08 | 15.76 | 0.01 | 1.948 | 1.69 | 1.21 | 2.9 | 97.0 | 0.1 | 0.16 | 0.68 | 0.86 | 2.81 | 3.6 | 0.004 | 0.65 | 0.0 | 0.04 | 17.02 | 0.00 | 1.900 | 7.75 | 0.26 | 2.3 | 97.7 | 0.0 | 0.69 | 0.79 | 0.66 | 0.87 | 2.55 | 43012 | 5428 | 26 | 0 | 18 | 0 | 0 | logfile |
✔ | 3JAM | 3047 | 2022-12-15 | 2015-06-17 | 3.46 | 3.54 | 3.52 | 3.5 | 0.007 | 1.32 | 63.0 | 0.10 | 21.31 | 0.01 | 1.398 | 7.24 | 13.45 | 10.2 | 86.0 | 3.8 | -1.98 | 0.64 | 0.83 | 1.53 | 3.5 | 0.004 | 0.72 | 0.0 | 0.04 | 19.38 | 0.01 | 1.863 | 12.97 | 0.65 | 9.3 | 89.5 | 1.1 | -1.00 | 0.72 | 0.67 | 0.86 | 1.64 | 77850 | 5056 | 42 | 1780 | 83 | 0 | 0 | logfile |
✔ | 3JAP | 3048 | 2022-12-17 | 2015-06-18 | 4.9 | 5.03 | 5.08 | 5.0 | 0.007 | 1.39 | 79.0 | 0.11 | 22.42 | 0.01 | 1.307 | 9.55 | 13.17 | 10.9 | 85.8 | 3.4 | -1.68 | 0.68 | 0.69 | — | 4.9 | 0.003 | 0.75 | 0.0 | 0.04 | 18.86 | 0.01 | 1.298 | 21.68 | 0.03 | 9.5 | 89.6 | 0.8 | -1.51 | 2.18 | 0.71 | 0.80 | — | 98333 | 7272 | 53 | 1869 | 255 | 0 | 0 | logfile |
✔ | 3JAR | 6351 | 2022-12-21 | 2015-06-19 | 3.4 | 3.64 | — | 3.6 | 0.008 | 1.38 | 6.0 | 0.08 | 16.19 | 0.01 | 1.923 | 1.68 | 1.82 | 2.6 | 97.2 | 0.2 | 0.27 | 0.69 | 0.87 | 3.14 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 16.69 | 0.00 | 1.907 | 6.21 | 0.11 | 2.1 | 97.9 | 0.0 | 0.87 | 1.52 | 0.65 | 0.88 | 2.66 | 43024 | 5428 | 26 | 6 | 12 | 0 | 0 | logfile |
✔ | 3JAS | 6353 | 2022-12-20 | 2015-06-19 | 3.5 | 3.68 | — | 3.7 | 0.008 | 1.46 | 6.0 | 0.08 | 16.41 | 0.01 | 1.846 | 3.52 | 2.07 | 3.1 | 96.8 | 0.1 | 0.41 | 0.64 | 0.85 | 2.90 | 3.6 | 0.003 | 0.61 | 0.0 | 0.04 | 17.03 | 0.00 | 1.977 | 8.03 | 0.21 | 2.7 | 97.3 | 0.0 | 1.21 | 0.77 | 0.60 | 0.84 | 2.44 | 40506 | 5124 | 24 | 6 | 12 | 0 | 0 | logfile |
✔ | 3JAT | 6352 | 2022-12-20 | 2015-06-20 | 3.5 | 3.68 | — | 3.7 | 0.009 | 1.54 | 12.0 | 0.09 | 16.21 | 0.01 | 1.855 | 1.71 | 0.55 | 3.1 | 96.8 | 0.1 | 0.14 | 0.64 | 0.82 | 2.93 | 3.7 | 0.004 | 0.63 | 0.0 | 0.04 | 17.24 | 0.00 | 1.850 | 8.29 | 0.25 | 2.5 | 97.5 | 0.0 | 0.90 | 0.77 | 0.63 | 0.85 | 2.28 | 40500 | 5124 | 24 | 0 | 24 | 0 | 0 | logfile |
✔ | 3JB6 | 6408 | 2022-12-13 | 2015-08-02 | 3.3 | 3.35 | — | 3.4 | 0.010 | 0.90 | 4.0 | 0.06 | 9.55 | 0.01 | 2.123 | 8.54 | 0.20 | 2.4 | 97.4 | 0.1 | -3.72 | 0.63 | 0.90 | 5.02 | 3.4 | 0.002 | 0.58 | 0.0 | 0.04 | 15.00 | 0.00 | 2.179 | 6.12 | 0.33 | 1.8 | 98.2 | 0.0 | 0.05 | 1.20 | 0.62 | 0.88 | 3.54 | 13904 | 1731 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 3JB7 | 6404 | 2022-12-13 | 2015-08-03 | 4.0 | 4.13 | — | 4.1 | 0.007 | 0.76 | 3.0 | 0.05 | 10.78 | 0.00 | 0.793 | 10.69 | 1.13 | 3.9 | 95.9 | 0.2 | -2.17 | 0.76 | 0.85 | — | 4.1 | 0.003 | 0.69 | 0.0 | 0.04 | 15.23 | 0.00 | 2.108 | 11.23 | 0.60 | 2.8 | 97.1 | 0.1 | 0.12 | 0.87 | 0.78 | 0.85 | — | 14176 | 1733 | 8 | 11 | 3 | 0 | 0 | logfile |
✘ | 3JB9 | 6413 | 2022-12-19 | 2015-08-09 | 3.6 | 3.70 | — | 3.6 | 0.010 | 1.29 | 13.0 | 0.07 | 16.84 | 0.01 | 1.253 | 18.11 | 8.06 | 9.1 | 87.9 | 3.0 | -3.97 | 0.52 | 0.51 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 86551 | 9194 | 50 | 328 | 1328 | 0 | 0 | logfile |
✔ | 3JBR | 6475 | 2022-12-13 | 2015-09-29 | 4.2 | 4.39 | — | 4.2 | 0.008 | 1.30 | 0.0 | 0.06 | 8.64 | 0.00 | 1.419 | 19.29 | 0.37 | 8.1 | 84.8 | 7.0 | -3.43 | 0.66 | 0.70 | — | 4.2 | 0.005 | 0.80 | 0.0 | 0.04 | 11.10 | 0.00 | 2.075 | 17.72 | 0.00 | 12.5 | 85.4 | 2.1 | -0.94 | 1.53 | 0.66 | 0.71 | — | 16467 | 2148 | 6 | 0 | 385 | 0 | 0 | logfile |
✔ | 3JBS | 6478 | 2022-12-11 | 2015-10-13 | 2.9 | 3.04 | — | 3.2 | 0.010 | 1.32 | 0.0 | 0.06 | 8.67 | 0.01 | 2.510 | 0.00 | 0.00 | 2.9 | 97.1 | 0.0 | 0.51 | 0.21 | 0.76 | 4.15 | 3.1 | 0.003 | 0.63 | 0.0 | 0.04 | 17.65 | 0.00 | 2.262 | 7.24 | 1.97 | 1.7 | 98.3 | 0.0 | 1.01 | 1.32 | 0.21 | 0.80 | 3.18 | 1401 | 175 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JBT | 6480 | 2022-12-14 | 2015-10-15 | 3.8 | 3.89 | — | 3.8 | 0.008 | 1.31 | 7.0 | 0.07 | 19.56 | 0.01 | 1.919 | 70.93 | 18.24 | 8.0 | 88.3 | 3.6 | -0.65 | 0.57 | 0.50 | 0.49 | 3.8 | 0.004 | 0.81 | 0.0 | 0.04 | 17.04 | 0.00 | 1.791 | 18.14 | 0.68 | 8.1 | 91.2 | 0.8 | -1.53 | 1.76 | 0.69 | 0.66 | 0.55 | 70252 | 8736 | 28 | 0 | 21 | 0 | 0 | logfile |
✔ | 3JBW | 6489 | 2022-12-20 | 2015-10-21 | 4.6 | 4.71 | — | 4.6 | 0.013 | 1.70 | 1.0 | 0.08 | 21.70 | 0.01 | 1.977 | 22.75 | 4.88 | 5.6 | 93.6 | 0.9 | -3.37 | 0.75 | 0.79 | — | 4.6 | 0.004 | 0.81 | 0.0 | 0.04 | 21.49 | 0.01 | 2.066 | 24.09 | 0.00 | 5.6 | 94.2 | 0.2 | -0.80 | 1.70 | 0.76 | 0.79 | — | 19997 | 1946 | 12 | 222 | 2 | 0 | 0 | logfile |
✔ | 3JBX | 6487 | 2022-12-18 | 2015-10-22 | 3.4 | 3.51 | — | 3.6 | 0.006 | 1.24 | 1.0 | 0.05 | 21.13 | 0.01 | 1.816 | 16.87 | 11.74 | 6.1 | 93.8 | 0.1 | -3.11 | 0.75 | 0.80 | 2.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16670 | 1802 | 14 | 116 | 6 | 0 | 0 | logfile |
✔ | 3JBY | 6488 | 2022-12-18 | 2015-10-22 | 3.7 | 3.78 | — | 3.8 | 0.015 | 1.57 | 0.0 | 0.07 | 20.72 | 0.01 | 2.015 | 24.87 | 5.74 | 4.2 | 95.5 | 0.3 | -3.60 | 0.77 | 0.83 | 2.24 | 3.7 | 0.004 | 0.76 | 0.0 | 0.04 | 21.29 | 0.00 | 2.177 | 15.77 | 0.63 | 4.3 | 95.4 | 0.3 | -0.14 | 0.86 | 0.75 | 0.83 | 1.47 | 16846 | 1802 | 12 | 124 | 6 | 0 | 0 | logfile |
✔ | 3JC1 | 6461 | 2022-12-16 | 2015-11-09 | 4.0 | 4.30 | — | 4.3 | 0.009 | 1.19 | 0.0 | 0.05 | 10.37 | 0.00 | 2.291 | 8.81 | 0.00 | 3.8 | 96.2 | 0.0 | -3.91 | 0.31 | 0.59 | — | 4.3 | 0.005 | 0.74 | 0.0 | 0.04 | 16.24 | 0.00 | 2.100 | 11.08 | 0.75 | 1.9 | 98.1 | 0.0 | 3.18 | 1.24 | 0.45 | 0.76 | — | 92106 | 11628 | 68 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JC2 | 3245 | 2022-12-11 | 2015-11-15 | 3.6 | 3.58 | 3.97 | 3.7 | 0.012 | 1.63 | 2.0 | 0.08 | 14.90 | 0.01 | 1.175 | 18.51 | 7.32 | 11.5 | 84.5 | 4.0 | -4.52 | 0.22 | 0.59 | 1.48 | 3.6 | 0.003 | 0.81 | 0.0 | 0.04 | 17.10 | 0.00 | 2.171 | 13.19 | 0.24 | 6.6 | 92.8 | 0.6 | -1.30 | 3.32 | 0.23 | 0.52 | 1.58 | 3911 | 482 | 4 | 0 | 32 | 0 | 0 | logfile |