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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 3JB9 | 6413 | 2023-07-15 | 2015-08-09 | 3.6 | 3.70 | — | 3.6 | 0.010 | 1.29 | 13.0 | 0.07 | 16.84 | 0.01 | 1.253 | 18.05 | 8.06 | 9.1 | 87.9 | 3.0 | -3.97 | 0.52 | 0.51 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 86551 | 9194 | 50 | 328 | 1328 | 0 | 0 | logfile |
✔ | 3JBR | 6475 | 2023-07-08 | 2015-09-29 | 4.2 | 4.39 | — | 4.2 | 0.009 | 1.31 | 0.0 | 0.06 | 8.32 | 0.00 | 1.419 | 19.19 | 0.37 | 8.1 | 84.8 | 7.0 | -3.43 | 0.66 | 0.70 | — | 4.2 | 0.004 | 0.80 | 0.0 | 0.04 | 10.88 | 0.00 | 2.100 | 16.99 | 0.00 | 12.1 | 85.7 | 2.2 | -0.93 | 1.54 | 0.66 | 0.71 | — | 16467 | 2148 | 6 | 0 | 385 | 0 | 0 | logfile |
✔ | 3JBS | 6478 | 2023-07-03 | 2015-10-13 | 2.9 | 3.04 | — | 3.2 | 0.010 | 1.32 | 0.0 | 0.06 | 8.67 | 0.01 | 2.510 | 0.00 | 0.00 | 2.9 | 97.1 | 0.0 | 0.51 | 0.21 | 0.76 | 4.15 | 3.0 | 0.003 | 0.61 | 0.0 | 0.04 | 18.11 | 0.00 | 2.225 | 5.17 | 3.95 | 1.7 | 98.3 | 0.0 | 0.99 | 1.75 | 0.21 | 0.81 | 3.63 | 1401 | 175 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JBT | 6480 | 2023-07-10 | 2015-10-15 | 3.8 | 3.89 | — | 3.8 | 0.008 | 1.31 | 7.0 | 0.07 | 19.56 | 0.01 | 1.919 | 70.66 | 18.24 | 8.0 | 88.3 | 3.6 | -0.65 | 0.57 | 0.50 | 0.49 | 3.8 | 0.003 | 0.78 | 0.0 | 0.04 | 16.97 | 0.00 | 1.830 | 16.15 | 0.59 | 7.8 | 91.5 | 0.7 | -1.46 | 1.75 | 0.70 | 0.68 | 0.58 | 70252 | 8736 | 28 | 0 | 21 | 0 | 0 | logfile |
✔ | 3JBW | 6489 | 2023-07-18 | 2015-10-21 | 4.6 | 4.71 | — | 4.6 | 0.013 | 1.70 | 1.0 | 0.08 | 21.70 | 0.01 | 1.977 | 22.69 | 4.88 | 5.6 | 93.6 | 0.9 | -3.37 | 0.75 | 0.79 | — | 4.6 | 0.005 | 0.81 | 0.0 | 0.04 | 21.61 | 0.01 | 2.070 | 24.94 | 0.00 | 6.5 | 93.3 | 0.2 | -1.14 | 1.71 | 0.76 | 0.80 | — | 19997 | 1946 | 12 | 222 | 2 | 0 | 0 | logfile |
✔ | 3JBX | 6487 | 2023-07-15 | 2015-10-22 | 3.4 | 3.51 | — | 3.6 | 0.006 | 1.24 | 1.0 | 0.05 | 21.13 | 0.01 | 1.816 | 16.75 | 11.74 | 6.1 | 93.8 | 0.1 | -3.11 | 0.75 | 0.80 | 2.08 | 3.5 | 0.003 | 0.74 | 0.0 | 0.04 | 21.28 | 0.01 | 2.040 | 16.68 | 0.95 | 4.6 | 95.3 | 0.1 | -0.50 | 0.79 | 0.74 | 0.82 | 1.88 | 16670 | 1802 | 14 | 116 | 6 | 0 | 0 | logfile |
✔ | 3JBY | 6488 | 2023-07-15 | 2015-10-22 | 3.7 | 3.78 | — | 3.8 | 0.015 | 1.57 | 0.0 | 0.07 | 20.72 | 0.01 | 2.015 | 24.71 | 5.74 | 4.2 | 95.5 | 0.3 | -3.60 | 0.77 | 0.83 | 2.24 | 3.7 | 0.003 | 0.72 | 0.0 | 0.04 | 21.19 | 0.00 | 2.170 | 15.22 | 0.38 | 4.4 | 95.3 | 0.3 | -0.20 | 0.86 | 0.75 | 0.82 | 1.61 | 16846 | 1802 | 12 | 124 | 6 | 0 | 0 | logfile |
✔ | 3JC2 | 3245 | 2023-07-03 | 2015-11-15 | 3.6 | 3.58 | 3.97 | 3.7 | 0.012 | 1.63 | 2.0 | 0.08 | 14.90 | 0.01 | 1.175 | 18.51 | 7.32 | 11.5 | 84.5 | 4.0 | -4.52 | 0.22 | 0.59 | 1.48 | 3.6 | 0.004 | 0.86 | 0.0 | 0.04 | 17.18 | 0.00 | 2.128 | 14.33 | 0.49 | 7.4 | 91.9 | 0.6 | -1.41 | 3.32 | 0.24 | 0.53 | 1.66 | 3911 | 482 | 4 | 0 | 32 | 0 | 0 | logfile |
✘ | 3JC5 | 6535 | 2023-07-18 | 2015-11-24 | 4.7 | 5.02 | — | 4.8 | 0.009 | 1.54 | 5.0 | 0.06 | 12.17 | 0.01 | 0.300 | 46.29 | 0.63 | 9.4 | 88.9 | 1.7 | -4.21 | 0.76 | 0.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40041 | 5039 | 11 | 0 | 0 | 0 | 0 | logfile |
✘ | 3JC6 | 6534 | 2023-07-11 | 2015-11-24 | 3.7 | 4.01 | — | 3.9 | 0.009 | 1.54 | 0.0 | 0.06 | 12.91 | 0.01 | 1.203 | 39.73 | 0.87 | 9.8 | 89.0 | 1.1 | -3.87 | 0.79 | 0.76 | 1.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23732 | 2953 | 12 | 0 | 1 | 0 | 0 | logfile |
✘ | 3JC7 | 6536 | 2023-07-18 | 2015-11-24 | 4.8 | 5.23 | — | 4.8 | 0.009 | 1.57 | 7.0 | 0.07 | 12.16 | 0.01 | 0.163 | 42.92 | 0.45 | 8.5 | 90.1 | 1.3 | -4.10 | 0.75 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40298 | 5075 | 12 | 0 | 1 | 0 | 0 | logfile |
✔ | 3JCA | 6441 | 2023-07-06 | 2015-11-24 | 4.8 | 4.59 | — | 4.5 | 0.012 | 1.49 | 0.0 | 0.07 | 18.62 | 0.01 | 2.370 | 2.63 | 0.00 | 7.2 | 92.8 | 0.0 | -1.87 | 0.75 | 0.75 | — | 4.5 | 0.003 | 0.67 | 0.0 | 0.04 | 19.55 | 0.01 | 2.058 | 15.25 | 0.10 | 5.1 | 94.9 | 0.0 | -0.38 | 2.47 | 0.76 | 0.77 | — | 11466 | 1226 | 16 | 80 | 4 | 0 | 0 | logfile |
✔ | 3JCD | 6549 | 2023-07-22 | 2015-12-01 | 3.7 | 5.07 | — | 19.0 | 0.006 | 0.83 | 0.0 | 0.04 | 14.69 | 0.00 | 1.289 | 14.63 | 0.02 | 9.6 | 85.8 | 4.5 | -2.43 | 0.34 | 0.04 | 0.30 | 3.4 | 0.005 | 1.16 | 0.0 | 0.06 | 20.49 | 0.01 | 1.400 | 48.65 | 0.88 | 15.2 | 83.4 | 1.3 | -4.28 | 2.51 | 0.71 | 0.42 | 0.16 | 147815 | 5982 | 57 | 4715 | 0 | 0 | 0 | logfile |
✔ | 3JCF | 6551 | 2023-07-07 | 2015-12-11 | 3.8 | 4.02 | — | 3.9 | 0.004 | 1.03 | 0.0 | 0.04 | 6.81 | 0.00 | 2.057 | 8.41 | 0.00 | 4.6 | 95.4 | 0.0 | -1.63 | 0.74 | 0.81 | 2.11 | 3.9 | 0.003 | 0.67 | 0.0 | 0.04 | 12.60 | 0.00 | 1.983 | 12.49 | 0.06 | 3.4 | 96.6 | 0.0 | 1.84 | 0.69 | 0.75 | 0.85 | 1.65 | 14228 | 1745 | 10 | 0 | 13 | 0 | 0 | logfile |
✔ | 3JCi | 6555 | 2023-07-16 | 2015-12-13 | 2.9 | 3.14 | — | 3.1 | 0.010 | 0.89 | 0.0 | 0.05 | 8.65 | 0.01 | 2.239 | 18.61 | 0.00 | 2.1 | 97.3 | 0.5 | -2.08 | 0.75 | 0.85 | 5.77 | 3.1 | 0.003 | 0.65 | 0.0 | 0.04 | 15.86 | 0.00 | 2.235 | 7.01 | 1.62 | 2.7 | 97.3 | 0.0 | -0.73 | 0.69 | 0.69 | 0.86 | 4.83 | 93420 | 11400 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JCJ | 6559 | 2023-07-23 | 2015-12-18 | 3.7 | 3.96 | — | 3.8 | 0.007 | 1.05 | 18.0 | 0.10 | 12.45 | 0.01 | 1.344 | 2.06 | 0.39 | 9.2 | 89.0 | 1.8 | -3.55 | 0.80 | 0.75 | 1.31 | 3.8 | 0.004 | 0.70 | 0.0 | 0.04 | 15.28 | 0.01 | 1.799 | 18.68 | 1.30 | 11.6 | 87.5 | 0.9 | -2.49 | 2.01 | 0.83 | 0.85 | 1.23 | 148347 | 6249 | 82 | 4594 | 197 | 837 | 0 | logfile |
✔ | 3JCL | 6526 | 2023-07-11 | 2015-12-21 | 4.0 | 4.03 | — | 4.0 | 0.018 | 1.83 | 9.0 | 0.09 | 9.75 | 0.01 | 2.379 | 2.74 | 0.00 | 5.2 | 94.3 | 0.6 | -0.72 | 0.71 | 0.74 | — | 4.0 | 0.003 | 0.74 | 0.0 | 0.04 | 14.59 | 0.00 | 2.114 | 12.67 | 0.44 | 7.2 | 92.7 | 0.1 | -0.57 | 1.77 | 0.70 | 0.70 | — | 24822 | 3201 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JCN | 3285 | 2023-07-22 | 2016-01-04 | 4.6 | 4.58 | — | 4.4 | 0.007 | 1.08 | 9.0 | 0.10 | 12.71 | 0.01 | 1.344 | 3.04 | 0.18 | 6.9 | 91.6 | 1.5 | -3.44 | 0.75 | 0.65 | — | 4.4 | 0.005 | 0.77 | 0.0 | 0.04 | 15.59 | 0.01 | 1.963 | 30.05 | 0.06 | 11.2 | 88.3 | 0.5 | -2.53 | 1.05 | 0.81 | 0.79 | — | 147292 | 6123 | 57 | 4638 | 1 | 0 | 0 | logfile |
✔ | 3JCo | 6574 | 2023-07-19 | 2016-01-06 | 4.8 | 5.76 | — | 4.7 | 0.012 | 1.35 | 4.0 | 0.06 | 10.71 | 0.01 | 1.268 | 95.78 | 0.41 | 13.5 | 85.0 | 1.5 | -5.20 | 0.87 | 0.76 | — | 4.7 | 0.005 | 0.87 | 0.0 | 0.05 | 12.33 | 0.01 | 1.964 | 38.94 | 0.01 | 8.9 | 90.8 | 0.4 | -1.76 | 3.09 | 0.90 | 0.84 | — | 104317 | 13329 | 47 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JCP | 6575 | 2023-07-19 | 2016-01-06 | 4.6 | 4.81 | — | 4.5 | 0.011 | 1.30 | 3.0 | 0.06 | 10.56 | 0.01 | 1.114 | 72.15 | 0.76 | 11.7 | 86.7 | 1.7 | -5.00 | 0.76 | 0.66 | — | 4.5 | 0.004 | 0.80 | 0.0 | 0.04 | 12.31 | 0.00 | 1.994 | 27.44 | 0.01 | 7.8 | 92.0 | 0.3 | -0.98 | 0.96 | 0.85 | 0.81 | — | 104170 | 13367 | 47 | 0 | 0 | 0 | 0 | logfile |