The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3J9J | 5778 | 2022-04-06 | 2015-02-02 | 3.275 | 3.52 | 3.19 | 3.6 | 0.015 | 1.08 | 0.0 | 0.09 | 9.35 | 0.01 | 2.266 | 2.70 | 0.00 | 3.3 | 94.5 | 2.2 | -0.65 | 0.53 | 0.57 | 2.57 | 3.5 | 0.003 | 0.65 | 0.0 | 0.04 | 15.80 | 0.00 | 1.905 | 14.19 | 0.17 | 6.7 | 92.7 | 0.6 | 2.30 | 3.87 | 0.59 | 0.76 | 1.97 | 21068 | 1260 | 4 | 0 | 0 | 0 | 10624 | logfile |
✔ | 3J9K | 2870 | 2022-04-07 | 2015-02-04 | 4.1 | 4.22 | — | 4.1 | 0.022 | 2.13 | 128.0 | 0.13 | 20.83 | 0.01 | 1.058 | 99.51 | 29.75 | 12.8 | 86.2 | 1.0 | -3.18 | 0.68 | 0.68 | — | 4.1 | 0.003 | 0.78 | 0.0 | 0.04 | 14.02 | 0.00 | 2.148 | 16.48 | 0.14 | 5.6 | 94.2 | 0.2 | -1.12 | 1.16 | 0.69 | 0.70 | — | 126512 | 10352 | 48 | 0 | 8304 | 0 | 0 | logfile |
✔ | 3J9L | 2871 | 2022-04-05 | 2015-02-04 | 4.0 | 4.10 | — | 4.0 | 0.022 | 1.96 | 105.0 | 0.12 | 19.47 | 0.01 | 1.058 | 81.48 | 27.30 | 10.5 | 88.6 | 0.9 | -4.09 | 0.66 | 0.68 | — | 4.0 | 0.046 | 3.09 | 53.0 | 0.12 | 19.38 | 0.02 | 1.821 | 98.71 | 4.04 | 40.2 | 57.9 | 1.9 | -7.58 | 2.86 | 0.70 | 0.77 | — | 112951 | 8688 | 31 | 0 | 8320 | 0 | 0 | logfile |
✔ | 3J9M | 2876 | 2022-04-16 | 2015-02-08 | 3.5 | 3.59 | 3.50 | 3.5 | 0.007 | 1.35 | 38.0 | 0.09 | 19.29 | 0.01 | 1.242 | 5.66 | 9.06 | 8.2 | 89.4 | 2.4 | -1.72 | 0.66 | 0.76 | 1.82 | 3.5 | 0.006 | 0.82 | 3.0 | 0.04 | 18.30 | 0.01 | 1.706 | 13.60 | 0.37 | 6.6 | 92.8 | 0.6 | 0.04 | 0.88 | 0.76 | 0.83 | 1.45 | 158384 | 12902 | 97 | 2454 | 309 | 0 | 0 | logfile |
✔ | 3J9P | 6267 | 2022-04-06 | 2015-02-14 | 4.24 | 2.59 | — | 4.1 | 0.009 | 1.84 | 4.0 | 0.07 | 17.68 | 0.01 | 2.113 | 26.26 | 4.64 | 10.2 | 88.2 | 1.6 | -3.58 | 0.73 | 0.78 | — | 4.2 | 0.003 | 1.08 | 0.0 | 0.04 | 13.94 | 0.00 | 2.147 | 16.50 | 0.00 | 8.3 | 91.0 | 0.7 | -1.68 | 1.18 | 0.73 | 0.80 | — | 16952 | 2240 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9Q | 6270 | 2022-04-09 | 2015-02-17 | 3.5 | 3.51 | — | 3.5 | 0.008 | 1.16 | 0.0 | 0.06 | 14.05 | 0.00 | 2.284 | 4.67 | 8.68 | 19.1 | 75.1 | 5.8 | -5.24 | 0.60 | 0.82 | 2.71 | 3.5 | 0.006 | 0.91 | 0.0 | 0.05 | 16.24 | 0.01 | 1.959 | 16.64 | 1.07 | 12.7 | 85.8 | 1.6 | -2.08 | 0.90 | 0.61 | 0.83 | 2.64 | 99648 | 13224 | 48 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9R | 6271 | 2022-04-09 | 2015-02-17 | 3.9 | 3.83 | — | 3.8 | 0.006 | 0.89 | 0.0 | 0.04 | 9.86 | 0.00 | 2.112 | 3.86 | 0.89 | 14.5 | 80.8 | 4.7 | -5.43 | 0.59 | 0.82 | 2.58 | 3.8 | 0.006 | 0.79 | 0.0 | 0.04 | 15.84 | 0.01 | 2.006 | 15.57 | 0.69 | 9.6 | 89.5 | 1.0 | -2.01 | 1.33 | 0.63 | 0.83 | 1.86 | 103824 | 13788 | 36 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9S | 6272 | 2022-04-05 | 2015-02-19 | 2.6 | 3.83 | — | 3.5 | 0.020 | 1.80 | 0.0 | 0.12 | 18.55 | 0.01 | 0.216 | 24.94 | 6.86 | 1.3 | 98.0 | 0.8 | 1.97 | 0.68 | 0.76 | 3.15 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 17.34 | 0.00 | 1.152 | 8.77 | 1.52 | 1.9 | 98.1 | 0.0 | 1.29 | 1.91 | 0.70 | 0.89 | 3.42 | 9813 | 1191 | 3 | 0 | 15 | 315 | 0 | logfile |
✔ | 3J9W | 6306 | 2022-04-08 | 2015-03-16 | 3.9 | 3.93 | — | 3.8 | 0.010 | 1.50 | 0.0 | 0.03 | 15.63 | 0.02 | 1.433 | 8.85 | 0.26 | 6.0 | 92.0 | 2.0 | -1.66 | 0.74 | 0.72 | 0.72 | 3.8 | 0.005 | 0.78 | 0.0 | 0.04 | 17.69 | 0.01 | 2.004 | 20.54 | 1.64 | 8.4 | 91.0 | 0.6 | -0.70 | 1.35 | 0.80 | 0.85 | 1.39 | 135425 | 5661 | 54 | 4675 | 0 | 0 | 0 | logfile |
✔ | 3J9X | 6310 | 2022-04-06 | 2015-03-21 | 3.8 | 3.84 | — | 3.8 | 0.014 | 1.24 | 0.0 | 0.08 | 13.09 | 0.02 | 2.369 | 3.42 | 0.48 | 2.8 | 95.6 | 1.6 | -0.65 | 0.51 | 0.57 | 0.47 | 3.8 | 0.005 | 0.78 | 0.0 | 0.04 | 16.13 | 0.01 | 2.080 | 20.92 | 0.59 | 2.5 | 97.5 | 0.0 | 1.88 | 1.09 | 0.62 | 0.77 | 1.97 | 70702 | 7424 | 60 | 696 | 0 | 0 | 0 | logfile |
✔ | 3J9Y | 6311 | 2022-04-12 | 2015-03-23 | 3.9 | 3.83 | — | 3.9 | 0.006 | 0.84 | 0.0 | 0.04 | 15.12 | 0.02 | 0.974 | 10.29 | 3.21 | 10.9 | 85.6 | 3.4 | -3.83 | 0.76 | 0.77 | 0.68 | 3.7 | 0.008 | 0.90 | 0.0 | 0.04 | 16.14 | 0.01 | 1.531 | 23.19 | 0.60 | 9.9 | 89.3 | 0.8 | -2.10 | 0.97 | 0.79 | 0.83 | 0.80 | 148915 | 6657 | 58 | 4645 | 0 | 0 | 0 | logfile |
✔ | 3J9Z | 6315 | 2022-04-16 | 2015-03-27 | 3.6 | 3.80 | — | 3.7 | 0.017 | 2.31 | 171.0 | 0.16 | 18.21 | 0.04 | 2.267 | 1.72 | 3.84 | 7.6 | 89.1 | 3.3 | -2.82 | 0.56 | 0.39 | 0.14 | 3.7 | 0.003 | 0.72 | 0.0 | 0.04 | 16.87 | 0.01 | 1.985 | 16.97 | 0.79 | 9.1 | 90.4 | 0.6 | -2.02 | 2.20 | 0.84 | 0.82 | 0.86 | 156714 | 7125 | 59 | 4717 | 1 | 0 | 0 | logfile |
✔ | 3JA7 | 6324 | 2022-04-09 | 2015-04-21 | 3.6 | 3.71 | — | 3.7 | 0.010 | 1.53 | 0.0 | 0.06 | 15.94 | 0.01 | 1.528 | 38.21 | 10.44 | 11.0 | 86.8 | 2.1 | -4.92 | 0.77 | 0.82 | 1.86 | 3.7 | 0.004 | 0.81 | 0.0 | 0.04 | 16.12 | 0.01 | 2.228 | 9.96 | 0.46 | 5.2 | 94.1 | 0.7 | -1.18 | 1.71 | 0.77 | 0.81 | 1.44 | 41280 | 5136 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JA8 | 6338 | 2022-04-07 | 2015-05-09 | 3.8 | 3.83 | — | 3.8 | 0.014 | 1.56 | 0.0 | 0.06 | 10.98 | 0.01 | 1.749 | 29.21 | 0.37 | 7.9 | 91.0 | 1.1 | -4.26 | 0.68 | 0.80 | 2.30 | 3.8 | 0.006 | 1.15 | 0.0 | 0.05 | 15.57 | 0.01 | 1.684 | 19.13 | 0.18 | 9.1 | 90.0 | 0.9 | -1.70 | 1.57 | 0.68 | 0.79 | 1.42 | 29838 | 3786 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 3JAC | 6343 | 2022-04-05 | 2015-06-05 | 4.8 | 6.42 | — | 9.4 | 0.007 | 1.81 | 3.0 | 0.07 | 10.64 | 0.03 | 1.020 | 57.64 | 4.17 | 5.0 | 90.3 | 4.8 | 1.36 | 0.42 | 0.40 | — | 9.1 | 0.012 | 1.72 | 0.0 | 0.06 | 13.52 | 0.01 | 1.934 | 77.71 | 0.00 | 26.2 | 72.4 | 1.4 | -5.34 | 3.68 | 0.54 | 0.61 | — | 15741 | 1716 | 3 | 0 | 1038 | 0 | 0 | logfile |
✔ | 3JAD | 6344 | 2022-04-05 | 2015-06-08 | 3.9 | 2.16 | — | 3.8 | 0.008 | 1.32 | 0.0 | 0.06 | 8.46 | 0.00 | 2.250 | 16.87 | 0.43 | 2.7 | 97.3 | 0.0 | -2.13 | 0.68 | 0.72 | 0.33 | 2.6 | 0.004 | 0.77 | 0.0 | 0.04 | 13.18 | 0.00 | 2.164 | 20.24 | 0.26 | 4.5 | 95.5 | 0.0 | 0.02 | 1.23 | 0.70 | 0.78 | 0.68 | 12705 | 1685 | 10 | 0 | 15 | 0 | 0 | logfile |
✔ | 3JAE | 6345 | 2022-04-05 | 2015-06-08 | 3.9 | 2.88 | — | 3.5 | 0.006 | 1.25 | 0.0 | 0.05 | 9.25 | 0.01 | 2.202 | 13.69 | 0.00 | 0.9 | 99.1 | 0.0 | -1.69 | 0.70 | 0.74 | 1.87 | 3.2 | 0.003 | 0.85 | 0.0 | 0.04 | 13.60 | 0.00 | 2.000 | 15.94 | 0.08 | 2.9 | 97.1 | 0.0 | 0.14 | 1.48 | 0.72 | 0.82 | 1.52 | 12825 | 1690 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 3JAF | 6346 | 2022-04-05 | 2015-06-08 | 3.8 | 2.26 | — | 3.8 | 0.025 | 1.93 | 0.0 | 0.10 | 10.09 | 0.01 | 2.134 | 18.84 | 0.70 | 0.6 | 99.4 | 0.0 | -0.82 | 0.69 | 0.71 | 1.52 | 3.8 | 0.003 | 1.04 | 0.0 | 0.04 | 14.08 | 0.00 | 2.196 | 19.54 | 0.28 | 2.6 | 97.4 | 0.0 | 0.57 | 1.36 | 0.72 | 0.81 | 1.50 | 13865 | 1710 | 10 | 0 | 15 | 0 | 0 | logfile |
✔ | 3JAG | 3038 | 2022-04-24 | 2015-06-10 | 3.65 | 3.73 | — | 3.7 | 0.008 | 1.35 | 24.0 | 0.10 | 20.18 | 0.01 | 0.799 | 7.60 | 12.37 | 9.6 | 87.0 | 3.3 | -3.61 | 0.79 | 0.87 | 1.91 | 3.7 | 0.006 | 0.81 | 1.0 | 0.04 | 18.70 | 0.01 | 1.516 | 15.71 | 0.36 | 8.2 | 90.9 | 0.9 | -1.23 | 1.57 | 0.78 | 0.85 | 1.65 | 226469 | 12666 | 106 | 5820 | 207 | 0 | 0 | logfile |
✔ | 3JAH | 3039 | 2022-04-24 | 2015-06-10 | 3.45 | 3.60 | — | 3.5 | 0.009 | 1.36 | 27.0 | 0.10 | 20.43 | 0.01 | 1.389 | 8.26 | 13.13 | 10.7 | 85.8 | 3.5 | -4.27 | 0.80 | 0.87 | 2.12 | 3.5 | 0.003 | 0.74 | 0.0 | 0.04 | 18.56 | 0.01 | 1.959 | 15.09 | 0.86 | 8.0 | 91.1 | 0.9 | -1.36 | 0.82 | 0.80 | 0.86 | 1.48 | 226454 | 12664 | 107 | 5820 | 207 | 0 | 0 | logfile |