Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3JAE	6345	2022-12-13	2015-06-08	3.9	2.88	—	3.5	0.006	1.25	0.0	0.05	9.25	0.01	2.202	13.89	0.00	0.9	99.1	0.0	-1.69	0.70	0.74	1.87	3.2	0.003	0.85	0.0	0.04	13.60	0.00	2.000	16.30	0.08	2.9	97.1	0.0	0.14	1.48	0.72	0.82	1.52	12825	1690	10	0	10	0	0	logfile
✔	3JAF	6346	2022-12-13	2015-06-08	3.8	2.26	—	3.8	0.025	1.93	0.0	0.10	10.09	0.01	2.134	19.02	0.70	0.6	99.4	0.0	-0.82	0.69	0.71	1.52	3.8	0.003	1.04	0.0	0.05	13.94	0.00	2.222	18.49	0.28	2.2	97.8	0.0	0.52	1.36	0.72	0.81	1.69	13865	1710	15	0	15	0	0	logfile
✔	3JAK	6349	2022-12-21	2015-06-16	3.3	3.49	—	3.6	0.009	1.40	0.0	0.08	15.62	0.01	2.010	2.33	1.12	2.2	97.7	0.1	0.27	0.64	0.85	2.90	3.5	0.003	0.59	0.0	0.04	16.63	0.00	1.943	6.34	0.22	1.9	98.1	0.0	1.11	0.73	0.61	0.87	2.64	43066	5428	26	0	18	0	0	logfile
✔	3JAL	6350	2022-12-21	2015-06-16	3.5	3.70	—	3.6	0.009	1.46	5.0	0.08	15.76	0.01	1.948	1.69	1.21	2.9	97.0	0.1	0.16	0.68	0.86	2.81	3.6	0.004	0.65	0.0	0.04	17.02	0.00	1.900	7.75	0.26	2.3	97.7	0.0	0.69	0.79	0.66	0.87	2.55	43012	5428	26	0	18	0	0	logfile
✔	3JAM	3047	2022-12-15	2015-06-17	3.46	3.54	3.52	3.5	0.007	1.32	63.0	0.10	21.31	0.01	1.398	7.24	13.45	10.2	86.0	3.8	-1.98	0.64	0.83	1.53	3.5	0.004	0.72	0.0	0.04	19.38	0.01	1.863	12.97	0.65	9.3	89.5	1.1	-1.00	0.72	0.67	0.86	1.64	77850	5056	42	1780	83	0	0	logfile
✔	3JAP	3048	2022-12-17	2015-06-18	4.9	5.03	5.08	5.0	0.007	1.39	79.0	0.11	22.42	0.01	1.307	9.55	13.17	10.9	85.8	3.4	-1.68	0.68	0.69	—	4.9	0.003	0.75	0.0	0.04	18.86	0.01	1.298	21.68	0.03	9.5	89.6	0.8	-1.51	2.18	0.71	0.80	—	98333	7272	53	1869	255	0	0	logfile
✔	3JAR	6351	2022-12-21	2015-06-19	3.4	3.64	—	3.6	0.008	1.38	6.0	0.08	16.19	0.01	1.923	1.68	1.82	2.6	97.2	0.2	0.27	0.69	0.87	3.14	3.6	0.003	0.59	0.0	0.04	16.69	0.00	1.907	6.21	0.11	2.1	97.9	0.0	0.87	1.52	0.65	0.88	2.66	43024	5428	26	6	12	0	0	logfile
✔	3JAS	6353	2022-12-20	2015-06-19	3.5	3.68	—	3.7	0.008	1.46	6.0	0.08	16.41	0.01	1.846	3.52	2.07	3.1	96.8	0.1	0.41	0.64	0.85	2.90	3.6	0.003	0.61	0.0	0.04	17.03	0.00	1.977	8.03	0.21	2.7	97.3	0.0	1.21	0.77	0.60	0.84	2.44	40506	5124	24	6	12	0	0	logfile
✔	3JAT	6352	2022-12-20	2015-06-20	3.5	3.68	—	3.7	0.009	1.54	12.0	0.09	16.21	0.01	1.855	1.71	0.55	3.1	96.8	0.1	0.14	0.64	0.82	2.93	3.7	0.004	0.63	0.0	0.04	17.24	0.00	1.850	8.29	0.25	2.5	97.5	0.0	0.90	0.77	0.63	0.85	2.28	40500	5124	24	0	24	0	0	logfile
✔	3JB6	6408	2022-12-13	2015-08-02	3.3	3.35	—	3.4	0.010	0.90	4.0	0.06	9.55	0.01	2.123	8.54	0.20	2.4	97.4	0.1	-3.72	0.63	0.90	5.02	3.4	0.002	0.58	0.0	0.04	15.00	0.00	2.179	6.12	0.33	1.8	98.2	0.0	0.05	1.20	0.62	0.88	3.54	13904	1731	6	0	2	0	0	logfile
✔	3JB7	6404	2022-12-13	2015-08-03	4.0	4.13	—	4.1	0.007	0.76	3.0	0.05	10.78	0.00	0.793	10.69	1.13	3.9	95.9	0.2	-2.17	0.76	0.85	—	4.1	0.003	0.69	0.0	0.04	15.23	0.00	2.108	11.23	0.60	2.8	97.1	0.1	0.12	0.87	0.78	0.85	—	14176	1733	8	11	3	0	0	logfile
✘	3JB9	6413	2022-12-19	2015-08-09	3.6	3.70	—	3.6	0.010	1.29	13.0	0.07	16.84	0.01	1.253	18.11	8.06	9.1	87.9	3.0	-3.97	0.52	0.51	1.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	86551	9194	50	328	1328	0	0	logfile
✔	3JBR	6475	2022-12-13	2015-09-29	4.2	4.39	—	4.2	0.008	1.30	0.0	0.06	8.64	0.00	1.419	19.29	0.37	8.1	84.8	7.0	-3.43	0.66	0.70	—	4.2	0.005	0.80	0.0	0.04	11.10	0.00	2.075	17.72	0.00	12.5	85.4	2.1	-0.94	1.53	0.66	0.71	—	16467	2148	6	0	385	0	0	logfile
✔	3JBS	6478	2022-12-11	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.1	0.003	0.63	0.0	0.04	17.65	0.00	2.262	7.24	1.97	1.7	98.3	0.0	1.01	1.32	0.21	0.80	3.18	1401	175	1	0	0	0	0	logfile
✔	3JBT	6480	2022-12-14	2015-10-15	3.8	3.89	—	3.8	0.008	1.31	7.0	0.07	19.56	0.01	1.919	70.93	18.24	8.0	88.3	3.6	-0.65	0.57	0.50	0.49	3.8	0.004	0.81	0.0	0.04	17.04	0.00	1.791	18.14	0.68	8.1	91.2	0.8	-1.53	1.76	0.69	0.66	0.55	70252	8736	28	0	21	0	0	logfile
✔	3JBW	6489	2022-12-20	2015-10-21	4.6	4.71	—	4.6	0.013	1.70	1.0	0.08	21.70	0.01	1.977	22.75	4.88	5.6	93.6	0.9	-3.37	0.75	0.79	—	4.6	0.004	0.81	0.0	0.04	21.49	0.01	2.066	24.09	0.00	5.6	94.2	0.2	-0.80	1.70	0.76	0.79	—	19997	1946	12	222	2	0	0	logfile
✔	3JBX	6487	2022-12-18	2015-10-22	3.4	3.51	—	3.6	0.006	1.24	1.0	0.05	21.13	0.01	1.816	16.87	11.74	6.1	93.8	0.1	-3.11	0.75	0.80	2.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16670	1802	14	116	6	0	0	logfile
✔	3JBY	6488	2022-12-18	2015-10-22	3.7	3.78	—	3.8	0.015	1.57	0.0	0.07	20.72	0.01	2.015	24.87	5.74	4.2	95.5	0.3	-3.60	0.77	0.83	2.24	3.7	0.004	0.76	0.0	0.04	21.29	0.00	2.177	15.77	0.63	4.3	95.4	0.3	-0.14	0.86	0.75	0.83	1.47	16846	1802	12	124	6	0	0	logfile
✔	3JC1	6461	2022-12-16	2015-11-09	4.0	4.30	—	4.3	0.009	1.19	0.0	0.05	10.37	0.00	2.291	8.81	0.00	3.8	96.2	0.0	-3.91	0.31	0.59	—	4.3	0.005	0.74	0.0	0.04	16.24	0.00	2.100	11.08	0.75	1.9	98.1	0.0	3.18	1.24	0.45	0.76	—	92106	11628	68	0	0	0	0	logfile
✔	3JC2	3245	2022-12-11	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.003	0.81	0.0	0.04	17.10	0.00	2.171	13.19	0.24	6.6	92.8	0.6	-1.30	3.32	0.23	0.52	1.58	3911	482	4	0	32	0	0	logfile

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