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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6PPF | 20435 | 2022-12-14 | 2019-07-06 | 3.4 | 3.48 | — | 3.4 | 0.006 | 0.88 | 13.0 | 0.05 | 19.21 | 0.00 | 1.152 | 15.01 | 7.36 | 9.0 | 90.1 | 0.9 | -4.80 | 0.73 | 0.73 | 1.38 | 3.4 | 0.003 | 0.64 | 0.0 | 0.04 | 18.53 | 0.00 | 2.054 | 10.97 | 0.63 | 7.2 | 92.6 | 0.1 | -2.61 | 0.63 | 0.81 | 0.82 | 1.52 | 71835 | 2101 | 22 | 2583 | 0 | 13 | 0 | logfile |
✔ | 6P9X | 20277 | 2022-12-11 | 2019-06-10 | 2.91 | 3.05 | 2.91 | 3.1 | 0.004 | 0.57 | 0.0 | 0.04 | 12.46 | 0.00 | 2.211 | 5.77 | 0.23 | 2.1 | 97.9 | 0.0 | -3.97 | 0.64 | 0.82 | 4.18 | 3.1 | 0.002 | 0.55 | 0.0 | 0.04 | 15.58 | 0.00 | 2.223 | 7.50 | 1.94 | 2.7 | 97.3 | 0.0 | 0.74 | 0.47 | 0.66 | 0.84 | 3.28 | 8177 | 1015 | 9 | 0 | 0 | 17 | 0 | logfile |
✔ | 6SKY | 10231 | 2022-12-14 | 2019-08-16 | 2.8 | 2.95 | — | 3.0 | 0.009 | 0.69 | 0.0 | 0.05 | 13.80 | 0.00 | 2.077 | 5.12 | 3.63 | 4.2 | 95.8 | 0.0 | -2.12 | 0.75 | 0.85 | 2.69 | 3.0 | 0.003 | 0.52 | 0.0 | 0.04 | 16.48 | 0.00 | 2.102 | 5.19 | 2.81 | 2.1 | 97.9 | 0.0 | 1.58 | 2.20 | 0.73 | 0.85 | 2.38 | 22348 | 2824 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6o84 | 0650 | 2022-12-11 | 2019-03-08 | 3.92 | 4.04 | — | 4.0 | 0.005 | 0.84 | 0.0 | 0.05 | 14.01 | 0.00 | 2.350 | 2.97 | 0.64 | 4.9 | 95.1 | 0.0 | -5.68 | 0.60 | 0.82 | 2.21 | 4.0 | 0.003 | 0.74 | 0.0 | 0.04 | 16.21 | 0.00 | 2.150 | 8.65 | 0.64 | 5.2 | 94.8 | 0.0 | 1.37 | 1.29 | 0.60 | 0.82 | 2.24 | 6224 | 712 | 2 | 0 | 118 | 0 | 0 | logfile |
✔ | 6MWQ | 9277 | 2022-12-14 | 2018-10-30 | 3.0 | 3.33 | 2.89 | 3.1 | 0.001 | 0.36 | 0.0 | 0.04 | 4.66 | 0.00 | 2.321 | 4.19 | 0.13 | 11.0 | 87.5 | 1.5 | -4.81 | 0.54 | 0.39 | 0.22 | 3.1 | 0.003 | 0.70 | 0.0 | 0.04 | 13.25 | 0.00 | 2.183 | 8.34 | 1.48 | 3.6 | 96.1 | 0.2 | -1.09 | 1.31 | 0.77 | 0.86 | 1.70 | 22072 | 2873 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KFH | 9973 | 2022-12-14 | 2019-07-07 | 3.6 | 3.70 | — | 3.7 | 0.007 | 0.73 | 0.0 | 0.05 | 14.75 | 0.00 | 2.255 | 9.85 | 0.00 | 12.3 | 87.7 | 0.0 | -3.15 | 0.66 | 0.82 | 0.94 | 3.7 | 0.003 | 0.73 | 0.0 | 0.04 | 17.63 | 0.00 | 2.094 | 9.87 | 0.63 | 8.3 | 91.7 | 0.0 | 0.08 | 0.63 | 0.63 | 0.82 | 1.07 | 20840 | 2544 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 6RKV | 4912 | 2022-12-18 | 2019-04-30 | 4.6 | 4.86 | — | 4.5 | 0.002 | 0.53 | 0.0 | 0.04 | 12.80 | 0.00 | 2.207 | 7.23 | 0.00 | 5.3 | 94.7 | 0.0 | -1.73 | 0.87 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15460 | 1784 | 8 | 64 | 0 | 0 | 0 | logfile |
✔ | 5ADX | 2856 | 2022-12-22 | 2015-08-24 | 4.0 | 4.18 | — | 4.0 | 0.008 | 1.05 | 1.0 | 0.06 | 12.82 | 0.00 | 1.155 | 3.45 | 1.97 | 6.3 | 93.5 | 0.3 | -2.81 | 0.77 | 0.63 | — | 4.0 | 0.004 | 0.71 | 0.0 | 0.04 | 14.81 | 0.00 | 2.081 | 12.00 | 0.29 | 5.6 | 94.4 | 0.0 | -0.57 | 0.91 | 0.86 | 0.79 | — | 49392 | 4737 | 27 | 0 | 2569 | 0 | 0 | logfile |
✔ | 6Po3 | 20408 | 2022-12-11 | 2019-07-03 | 4.28 | 4.38 | — | 4.3 | 0.003 | 0.65 | 0.0 | 0.04 | 11.03 | 0.00 | 2.179 | 2.55 | 0.00 | 0.4 | 99.6 | 0.0 | -1.68 | 0.75 | 0.75 | — | 4.3 | 0.004 | 0.60 | 0.0 | 0.04 | 13.00 | 0.00 | 1.946 | 10.72 | 0.00 | 4.3 | 95.7 | 0.0 | -0.19 | 2.56 | 0.79 | 0.79 | — | 53225 | 3406 | 20 | 0 | 12 | 0 | 26724 | logfile |
✔ | 6T9L | 10415 | 2022-12-14 | 2019-10-28 | 3.6 | 3.74 | 3.53 | 3.6 | 0.002 | 0.47 | 0.0 | 0.03 | 22.54 | 0.00 | 2.136 | 7.14 | 0.07 | 1.1 | 98.9 | 0.0 | -1.63 | 0.74 | 0.68 | 0.82 | 3.6 | 0.004 | 0.64 | 0.0 | 0.04 | 25.05 | 0.00 | 1.954 | 9.36 | 0.30 | 3.3 | 96.7 | 0.0 | 0.94 | 0.83 | 0.84 | 0.84 | 1.19 | 18157 | 1532 | 18 | 290 | 8 | 0 | 0 | logfile |
✔ | 5iRZ | 8118 | 2022-12-13 | 2016-03-15 | 3.28 | 3.63 | 3.24 | 3.5 | 0.010 | 1.31 | 0.0 | 0.23 | 16.22 | 0.00 | 2.008 | 9.02 | 0.00 | 7.5 | 92.5 | 0.0 | -5.78 | 0.68 | 0.77 | 4.48 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 16.32 | 0.00 | 2.184 | 9.10 | 0.64 | 6.7 | 93.3 | 0.0 | 0.77 | 0.68 | 0.66 | 0.84 | 3.08 | 12504 | 1576 | 8 | 0 | 24 | 0 | 0 | logfile |
✔ | 6CU8 | 7619 | 2022-12-11 | 2018-03-23 | 3.6 | 3.65 | — | 4.2 | 0.004 | 0.73 | 0.0 | 0.06 | 7.75 | 0.00 | 2.412 | 6.41 | 0.00 | 5.1 | 94.9 | 0.0 | -2.86 | 0.45 | 0.73 | -0.16 | 4.2 | 0.005 | 0.79 | 0.0 | 0.06 | 12.89 | 0.00 | 2.161 | 16.36 | 0.65 | 15.9 | 84.1 | 0.0 | -3.37 | 1.79 | 0.42 | 0.73 | 2.58 | 2880 | 410 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XYP | 10651 | 2022-12-11 | 2020-01-30 | 3.29 | 3.37 | 3.04 | 3.4 | 0.008 | 0.64 | 0.0 | 0.05 | 13.98 | 0.00 | 2.151 | 8.09 | 0.00 | 2.8 | 97.2 | 0.0 | -5.04 | 0.47 | 0.84 | 4.49 | 3.4 | 0.006 | 0.62 | 0.0 | 0.05 | 15.80 | 0.00 | 2.188 | 4.94 | 0.20 | 2.4 | 97.6 | 0.0 | -3.45 | 0.35 | 0.47 | 0.84 | 5.05 | 4955 | 725 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 5L93 | 4015 | 2022-12-16 | 2016-06-09 | 3.9 | 4.05 | — | 4.1 | 0.004 | 0.92 | 0.0 | 0.04 | 8.71 | 0.00 | 1.566 | 7.24 | 0.00 | 9.8 | 90.2 | 0.0 | -2.97 | 0.53 | 0.75 | 1.23 | 4.0 | 0.003 | 0.76 | 0.0 | 0.04 | 16.80 | 0.00 | 2.155 | 11.85 | 0.59 | 6.5 | 93.3 | 0.1 | 0.54 | 1.70 | 0.56 | 0.81 | 1.09 | 31212 | 4032 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XYQ | 10652 | 2022-12-11 | 2020-01-30 | 3.09 | 3.30 | 2.79 | 3.3 | 0.007 | 0.71 | 0.0 | 0.05 | 12.97 | 0.00 | 2.130 | 9.08 | 0.00 | 3.5 | 96.5 | 0.0 | -4.52 | 0.46 | 0.84 | 3.97 | 3.3 | 0.004 | 0.55 | 0.0 | 0.05 | 15.09 | 0.00 | 2.232 | 8.09 | 0.82 | 2.3 | 97.7 | 0.0 | -3.28 | 0.44 | 0.47 | 0.85 | 4.77 | 4955 | 725 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 5YRN | 6842 | 2022-12-12 | 2017-11-09 | 4.1 | 3.09 | 3.51 | 6.7 | 0.007 | 1.00 | 0.0 | 0.05 | 10.65 | 0.00 | 2.371 | 8.18 | 0.00 | 4.7 | 95.3 | 0.0 | -3.39 | 0.53 | 0.56 | — | 3.8 | 0.004 | 0.89 | 0.0 | 0.05 | 14.67 | 0.00 | 2.067 | 25.63 | 0.11 | 3.7 | 96.3 | 0.0 | -0.69 | 2.92 | 0.64 | 0.80 | — | 8280 | 1044 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 6oSM | 20186 | 2022-12-18 | 2019-05-01 | 3.4 | 3.31 | — | 3.4 | 0.012 | 1.45 | 0.0 | 0.09 | 14.06 | 0.00 | 2.183 | 28.91 | 14.88 | 34.5 | 65.5 | 0.0 | -5.34 | 0.46 | 0.74 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4100 | 600 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ZBG | 6911 | 2022-12-14 | 2018-02-11 | 4.36 | 4.83 | — | 4.5 | 0.005 | 0.70 | 0.0 | 0.04 | 13.89 | 0.00 | 2.258 | 7.82 | 4.79 | 7.0 | 92.7 | 0.3 | -2.22 | 0.69 | 0.81 | — | 4.5 | 0.004 | 0.69 | 0.0 | 0.04 | 12.90 | 0.00 | 2.203 | 14.77 | 0.00 | 6.2 | 93.8 | 0.0 | 1.21 | 1.02 | 0.70 | 0.83 | — | 21260 | 2680 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GH6 | 0002 | 2022-12-15 | 2018-05-04 | 4.1 | 4.20 | — | 3.9 | 0.004 | 0.91 | 0.0 | 0.05 | 14.40 | 0.00 | 1.934 | 15.55 | 0.38 | 9.7 | 89.3 | 0.9 | -3.61 | 0.85 | 0.74 | — | 3.9 | 0.005 | 0.79 | 0.0 | 0.04 | 15.99 | 0.00 | 1.945 | 12.46 | 0.08 | 9.7 | 89.7 | 0.6 | -0.99 | 1.78 | 0.87 | 0.81 | — | 28051 | 3482 | 8 | 96 | 51 | 0 | 0 | logfile |
✔ | 6RVR | 10010 | 2022-12-20 | 2019-05-31 | 3.46 | 3.63 | — | 3.5 | 0.008 | 0.75 | 0.0 | 0.05 | 14.89 | 0.00 | 2.082 | 8.59 | 0.57 | 10.3 | 89.7 | 0.0 | -4.34 | 0.81 | 0.85 | 2.30 | 3.5 | 0.002 | 0.58 | 0.0 | 0.04 | 15.99 | 0.00 | 2.209 | 6.68 | 0.31 | 7.6 | 92.4 | 0.0 | -0.52 | 0.45 | 0.79 | 0.84 | 1.87 | 37716 | 4680 | 12 | 0 | 0 | 0 | 0 | logfile |