Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ME0	23786	2022-07-06	2021-04-06	2.48	2.69	2.55	2.6	0.006	0.55	0.0	0.05	14.32	0.00	2.135	5.82	4.96	2.0	98.0	0.0	-0.22	0.82	0.90	5.65	2.6	0.003	0.56	0.0	0.05	15.55	0.00	2.228	6.52	3.22	1.6	98.4	0.0	0.26	2.52	0.84	0.92	5.41	16386	2082	6	0	0	0	0	logfile
✔	7NRi	12546	2022-07-05	2021-03-03	3.03	3.49	3.11	3.3	0.007	0.63	2.0	0.05	14.47	0.00	1.984	3.89	0.32	6.2	93.7	0.1	-3.46	0.78	0.84	3.97	3.3	0.002	0.51	0.0	0.04	15.39	0.00	2.029	3.72	0.00	3.6	96.4	0.0	-0.37	0.69	0.75	0.86	3.76	23143	1505	6	0	0	0	11351	logfile
✔	7NEZ	12295	2022-07-03	2021-02-05	3.39	3.83	—	3.7	0.009	0.79	3.0	0.06	9.49	0.00	1.958	13.92	0.67	7.0	93.0	0.0	-2.47	0.59	0.73	2.13	3.7	0.003	0.72	0.0	0.04	14.45	0.00	2.162	10.64	0.30	5.2	94.8	0.0	-0.82	1.33	0.65	0.82	2.18	12345	1576	9	0	5	0	0	logfile
✔	7NFD	12300	2022-07-03	2021-02-06	3.51	3.83	—	3.8	0.009	1.01	1.0	0.05	15.04	0.00	2.071	25.39	0.37	15.9	84.0	0.1	-5.50	0.62	0.81	2.22	3.8	0.006	0.81	0.0	0.05	16.99	0.01	2.114	12.29	0.30	11.7	88.3	0.0	-2.69	0.90	0.68	0.83	1.87	12394	1582	9	0	5	0	0	logfile
✔	7CKL	30387	2022-07-03	2020-07-17	3.88	4.01	—	3.9	0.002	0.56	0.0	0.04	13.09	0.00	2.244	10.45	0.00	6.8	93.1	0.1	-2.17	0.73	0.75	1.49	3.9	0.004	0.78	0.0	0.04	15.86	0.01	2.158	12.90	0.39	7.3	92.7	0.0	0.22	0.70	0.72	0.76	1.45	11521	1464	4	0	3	0	0	logfile
✔	7NS3	12559	2022-07-04	2021-03-05	3.5	3.47	3.37	3.4	0.003	0.57	0.0	0.04	14.36	0.00	2.130	6.57	0.07	5.6	94.4	0.0	0.27	0.83	0.86	2.46	3.4	0.003	0.51	0.0	0.04	15.58	0.00	2.195	5.69	0.33	5.3	94.7	0.0	1.09	0.27	0.83	0.85	1.93	14448	1849	6	0	0	0	0	logfile
✔	7NT9	12585	2022-07-05	2021-03-09	3.36	3.62	3.55	3.5	0.003	0.58	0.0	0.05	13.42	0.00	2.229	6.38	0.00	3.8	96.2	0.0	-0.98	0.78	0.81	2.31	3.5	0.003	0.57	0.0	0.05	14.52	0.00	2.178	6.36	0.25	4.1	95.9	0.0	-0.77	0.35	0.79	0.82	2.29	26952	3261	39	0	87	132	0	logfile
✔	7NTA	12586	2022-07-05	2021-03-09	3.5	3.71	3.63	3.6	0.004	0.64	0.0	0.05	14.12	0.00	2.050	7.13	0.00	4.1	95.9	0.0	-1.38	0.80	0.81	2.51	3.6	0.002	0.57	0.0	0.05	15.02	0.00	2.009	5.83	0.14	4.0	96.0	0.0	-0.68	0.36	0.79	0.79	2.24	26805	3261	34	0	80	89	0	logfile
✔	7KF6	22844	2022-07-04	2020-10-13	3.4	3.42	—	3.4	0.003	0.53	0.0	0.05	12.63	0.00	1.809	7.77	0.00	5.6	94.4	0.0	-3.26	0.68	0.68	1.06	3.4	0.005	0.74	0.0	0.06	15.84	0.01	2.001	13.17	0.48	8.1	91.8	0.1	-1.05	1.08	0.72	0.78	1.19	47598	3045	6	0	3	0	24189	logfile
✔	7EL9	31177	2022-07-05	2021-04-09	3.2	3.41	—	3.4	0.003	0.58	2.0	0.04	14.56	0.00	2.202	11.46	2.99	11.0	88.9	0.1	-3.18	0.71	0.75	2.17	3.3	0.004	0.80	0.0	0.04	16.84	0.01	2.093	16.52	0.19	11.2	88.6	0.2	-1.56	0.61	0.73	0.79	1.69	28128	3560	10	14	10	0	0	logfile
✔	7LS5	23502	2022-07-06	2021-02-17	2.74	3.16	2.79	3.1	0.004	0.53	0.0	0.06	12.59	0.00	2.007	3.98	0.02	1.7	98.3	0.0	0.77	0.72	0.80	4.34	3.1	0.004	0.54	0.0	0.06	14.84	0.00	2.009	5.02	0.72	1.5	98.5	0.0	1.22	1.15	0.65	0.75	3.84	98042	6315	28	0	0	0	48895	logfile
✔	7A02	11591	2022-07-04	2020-08-06	3.0	3.22	—	3.2	0.008	0.74	0.0	0.05	12.61	0.00	2.323	8.00	0.00	8.2	91.8	0.0	-1.94	0.60	0.85	3.93	3.2	0.005	0.68	0.0	0.05	15.22	0.00	2.114	6.47	5.80	7.0	93.0	0.0	-1.24	0.95	0.59	0.88	4.20	18699	2576	23	0	0	0	0	logfile
✔	7o85	12761	2022-07-06	2021-04-14	3.3	3.50	—	3.5	0.002	0.48	0.0	0.04	13.51	0.00	1.470	7.44	0.00	3.3	96.7	0.0	-0.25	0.71	0.75	2.90	3.5	0.004	0.61	0.0	0.04	15.42	0.01	2.106	10.96	0.32	5.0	95.0	0.0	-0.97	0.55	0.74	0.81	3.18	28525	3843	28	0	14	0	0	logfile
✘	7NEQ	12290	2022-07-03	2021-02-04	3.12	2.80	—	3.1	0.005	0.74	0.0	0.05	16.81	0.00	1.113	15.56	5.56	7.9	92.1	0.0	-3.70	0.74	0.81	3.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12529	1582	11	0	7	16	0	logfile
✘	7E32	30974	2022-07-03	2021-02-07	2.9	3.21	—	3.1	0.003	0.45	0.0	0.04	12.53	0.00	1.363	6.09	0.10	2.1	97.9	0.0	2.17	0.62	0.74	2.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8797	1117	5	0	2	0	0	logfile
✔	7LS6	23503	2022-07-08	2021-02-17	3.17	3.85	3.29	3.8	0.003	0.55	0.0	0.04	13.12	0.00	1.979	5.87	0.00	2.1	97.9	0.0	0.90	0.77	0.79	2.76	3.8	0.003	0.54	0.0	0.04	14.50	0.00	1.948	7.29	0.15	2.6	97.4	0.0	0.85	0.40	0.76	0.80	2.49	50103	3210	15	0	0	0	25006	logfile
✔	6WKV	21810	2022-07-05	2020-04-17	2.99	2.74	—	2.9	0.012	0.66	0.0	0.06	16.80	0.00	2.116	10.99	3.10	6.7	93.3	0.0	-4.68	0.81	0.85	3.88	2.9	0.003	0.58	0.0	0.04	18.42	0.00	2.156	4.74	1.26	2.5	97.5	0.0	-0.16	1.17	0.82	0.87	2.91	126600	15420	108	0	60	0	0	logfile
✔	7CX4	30491	2022-07-03	2020-09-01	2.9	3.15	—	3.1	0.004	0.64	0.0	0.05	12.81	0.00	2.032	8.12	0.00	3.5	96.5	0.0	-1.78	0.66	0.80	3.58	3.1	0.002	0.58	0.0	0.04	16.09	0.00	2.158	7.41	2.39	2.6	97.4	0.0	0.65	0.54	0.66	0.81	2.62	7926	1020	6	0	1	0	0	logfile
✔	7BL5	12218	2022-07-06	2021-01-18	3.3	3.74	—	3.5	0.002	0.45	0.0	0.03	14.15	0.00	2.029	11.86	0.11	5.7	94.3	0.0	-1.05	0.75	0.79	1.02	3.5	0.004	0.64	1.0	0.03	15.81	0.00	1.958	17.19	0.88	7.9	92.1	0.0	-1.73	0.57	0.76	0.83	1.21	98927	4348	46	3033	3	27	0	logfile
✔	7BL3	12216	2022-07-06	2021-01-18	3.5	3.69	—	3.5	0.002	0.48	0.0	0.03	14.11	0.00	2.089	12.48	0.03	6.4	93.6	0.0	-1.33	0.75	0.79	1.02	3.5	0.005	0.67	0.0	0.04	15.54	0.01	1.967	17.85	0.85	9.0	91.0	0.0	-1.75	0.59	0.76	0.83	1.07	92831	3612	39	3021	2	27	0	logfile

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