Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7U6o	26377	2023-08-20	2022-03-04	3.2	4.03	3.21	3.6	0.003	0.58	0.0	0.04	13.73	0.00	2.152	17.72	0.06	3.9	96.1	0.0	0.12	0.85	0.79	1.37	3.7	0.004	0.71	0.0	0.04	15.09	0.00	2.060	20.03	0.06	3.5	96.5	0.0	0.60	0.43	0.86	0.81	1.14	29424	3816	6	0	0	0	0	logfile
✘	8DDW	27344	2023-08-18	2022-06-19	4.7	4.19	4.62	4.0	0.003	0.53	0.0	0.04	14.47	0.00	2.179	11.42	8.35	5.4	94.5	0.1	0.15	0.72	0.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25869	3198	10	0	68	0	0	logfile
✔	7W7T	32347	2023-08-10	2021-12-06	3.4	2.93	3.31	3.4	0.003	0.63	0.0	0.04	13.40	0.00	2.069	10.32	0.11	2.9	97.1	0.0	0.71	0.57	0.70	1.45	3.4	0.003	0.60	0.0	0.04	15.60	0.00	2.053	9.56	0.34	3.7	96.3	0.0	-0.12	1.82	0.58	0.73	1.21	7903	1021	1	0	4	0	0	logfile
✔	7VXD	32176	2023-08-21	2021-11-12	4.0	4.60	—	4.2	0.003	0.50	0.0	0.04	7.89	0.00	2.091	7.52	0.03	4.0	95.9	0.2	-2.30	0.70	0.65	—	4.3	0.003	0.73	0.0	0.04	14.17	0.00	2.102	16.36	0.45	4.0	96.0	0.0	-0.78	1.63	0.74	0.74	—	30194	3829	4	0	0	0	0	logfile
✔	7UZZ	26923	2023-08-16	2022-05-09	4.45	6.04	4.45	4.4	0.008	0.98	0.0	0.06	12.58	0.00	1.424	17.03	0.75	5.0	95.0	0.0	-0.66	0.84	0.70	—	4.4	0.003	0.58	0.0	0.04	12.99	0.00	2.131	14.09	0.05	3.4	96.6	0.0	0.63	2.36	0.91	0.83	—	19967	2380	11	30	0	0	0	logfile
✔	7W7U	32348	2023-08-10	2021-12-06	3.0	2.54	2.92	2.9	0.003	0.56	0.0	0.04	12.54	0.00	1.966	7.56	0.00	2.6	97.4	0.0	0.77	0.59	0.77	1.85	3.0	0.003	0.56	0.0	0.04	16.36	0.00	2.048	8.38	2.32	3.0	97.0	0.0	0.46	1.31	0.60	0.80	1.76	7833	1015	1	0	2	0	0	logfile
✔	7YAC	33708	2023-08-11	2022-06-27	3.24	2.68	3.20	3.0	0.003	0.77	0.0	0.04	14.58	0.00	2.235	6.23	0.00	3.9	96.1	0.0	0.07	0.65	0.79	2.16	3.0	0.002	0.60	0.0	0.04	16.62	0.00	2.219	7.08	0.31	4.8	95.2	0.0	-0.05	1.26	0.65	0.81	1.87	8937	1140	6	0	1	0	0	logfile
✔	7RTV	24690	2023-08-09	2021-08-15	3.96	4.06	—	4.1	0.004	0.76	0.0	0.05	14.21	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.91	0.0	0.04	16.58	0.00	2.168	18.02	0.32	3.3	96.7	0.0	2.73	1.76	0.41	0.64	0.28	2881	366	3	0	6	0	0	logfile
✔	7ZN2	14799	2023-08-21	2022-04-20	4.29	3.73	4.16	3.5	0.003	0.52	0.0	0.04	13.12	0.00	2.048	7.87	0.00	3.5	96.5	0.0	-1.30	0.80	0.72	—	3.3	0.003	0.62	0.0	0.04	12.96	0.00	2.077	13.72	0.00	3.9	96.1	0.0	-1.13	2.07	0.84	0.80	—	89393	11481	36	0	0	0	0	logfile
✔	6G51	4350	2023-08-27	2018-03-28	4.1	4.42	—	4.0	0.007	1.44	22.0	0.10	21.21	0.00	0.264	3.79	0.00	7.0	92.3	0.8	-2.90	0.71	0.63	—	3.9	0.005	0.87	0.0	0.04	22.63	0.00	1.977	12.39	0.00	13.4	86.5	0.1	-2.16	1.66	0.81	0.69	—	50662	6237	38	1659	0	0	0	logfile
✔	7W7W	32350	2023-08-10	2021-12-06	3.2	2.98	3.22	3.2	0.003	1.16	0.0	0.04	13.44	0.00	2.051	8.21	0.00	2.9	97.1	0.0	0.82	0.59	0.74	2.05	3.2	0.002	0.84	0.0	0.04	15.74	0.00	1.537	8.97	0.23	3.9	96.1	0.0	0.72	0.38	0.58	0.75	1.99	7870	1018	1	0	2	0	0	logfile
✔	7W9C	32364	2023-08-20	2021-12-09	3.2	3.43	—	3.5	0.004	0.61	0.0	0.04	12.69	0.00	2.079	1.76	0.00	2.8	97.2	0.0	-3.72	0.64	0.69	2.04	3.4	0.003	0.60	0.0	0.04	15.92	0.00	2.159	8.97	0.30	3.2	96.8	0.0	-0.17	1.46	0.67	0.76	1.63	29737	3777	4	0	0	0	0	logfile
✘	6G53	4351	2023-08-27	2018-03-28	4.5	4.86	—	4.3	0.007	1.44	21.0	0.10	21.32	0.00	1.260	2.52	0.00	7.1	92.2	0.7	-2.88	0.67	0.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49052	5912	37	1659	0	0	0	logfile
✔	6PPF	20435	2023-08-17	2019-07-06	3.4	3.48	—	3.4	0.006	0.88	13.0	0.05	19.21	0.00	1.152	14.99	7.36	9.0	90.1	0.9	-4.80	0.73	0.73	1.38	3.4	0.003	0.62	0.0	0.03	18.42	0.00	2.051	10.74	0.52	7.0	92.9	0.1	-2.46	0.66	0.81	0.82	1.58	71835	2101	22	2583	0	13	0	logfile
✔	7Ni2	12349	2023-08-21	2021-02-11	2.89	3.11	—	3.0	0.007	0.70	0.0	0.05	11.38	0.00	2.198	11.77	0.00	3.2	96.8	0.0	-1.51	0.78	0.86	2.96	3.0	0.003	0.69	0.0	0.05	14.58	0.00	2.200	9.45	1.39	3.2	96.8	0.0	0.40	0.49	0.77	0.88	2.31	31344	4080	8	0	0	0	0	logfile
✔	7UWQ	26838	2023-08-16	2022-05-03	3.05	3.55	3.19	3.5	0.005	0.57	0.0	0.04	13.81	0.00	2.313	3.18	0.00	3.0	97.0	0.0	-0.63	0.70	0.86	3.23	3.5	0.003	0.52	0.0	0.04	15.19	0.00	2.309	4.41	0.09	2.4	97.6	0.0	0.30	0.23	0.72	0.87	2.61	20538	2598	6	0	0	0	0	logfile
✔	6SD4	10148	2023-08-25	2019-07-26	2.8	3.00	2.71	2.9	0.010	0.78	0.0	0.04	12.27	0.00	2.235	7.10	0.75	9.7	89.7	0.7	-4.67	0.78	0.85	5.63	2.9	0.004	0.65	0.0	0.04	17.17	0.00	2.013	7.15	1.62	1.1	98.9	0.0	1.08	0.98	0.74	0.86	4.72	40562	5134	34	0	0	0	0	logfile
✔	7CX4	30491	2023-08-10	2020-09-01	2.9	3.15	—	3.1	0.004	0.64	0.0	0.05	12.81	0.00	2.032	8.05	0.00	3.5	96.5	0.0	-1.78	0.66	0.80	3.58	3.1	0.002	0.56	0.0	0.04	16.05	0.00	2.158	6.90	1.91	3.1	96.9	0.0	0.48	0.50	0.65	0.81	2.63	7926	1020	6	0	1	0	0	logfile
✔	6P9X	20277	2023-08-10	2019-06-10	2.91	3.05	2.91	3.1	0.004	0.57	0.0	0.04	12.46	0.00	2.211	5.46	0.23	2.1	97.9	0.0	-3.97	0.64	0.82	4.18	3.1	0.002	0.56	0.0	0.04	15.58	0.00	2.201	7.13	2.16	2.2	97.8	0.0	0.79	0.49	0.66	0.84	3.26	8177	1015	9	0	0	17	0	logfile
✔	8DVU	27745	2023-08-09	2022-07-29	2.9	3.07	2.86	3.0	0.002	0.51	0.0	0.04	13.39	0.00	2.164	6.25	1.01	6.2	93.8	0.0	-2.23	0.73	0.84	3.49	3.0	0.004	0.57	0.0	0.04	15.42	0.00	2.030	6.08	2.01	7.8	92.2	0.0	0.24	0.42	0.70	0.84	3.74	6170	669	3	36	3	0	0	logfile

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