Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PPF	20435	2022-12-14	2019-07-06	3.4	3.48	—	3.4	0.006	0.88	13.0	0.05	19.21	0.00	1.152	15.01	7.36	9.0	90.1	0.9	-4.80	0.73	0.73	1.38	3.4	0.003	0.64	0.0	0.04	18.53	0.00	2.054	10.97	0.63	7.2	92.6	0.1	-2.61	0.63	0.81	0.82	1.52	71835	2101	22	2583	0	13	0	logfile
✔	6P9X	20277	2022-12-11	2019-06-10	2.91	3.05	2.91	3.1	0.004	0.57	0.0	0.04	12.46	0.00	2.211	5.77	0.23	2.1	97.9	0.0	-3.97	0.64	0.82	4.18	3.1	0.002	0.55	0.0	0.04	15.58	0.00	2.223	7.50	1.94	2.7	97.3	0.0	0.74	0.47	0.66	0.84	3.28	8177	1015	9	0	0	17	0	logfile
✔	6SKY	10231	2022-12-14	2019-08-16	2.8	2.95	—	3.0	0.009	0.69	0.0	0.05	13.80	0.00	2.077	5.12	3.63	4.2	95.8	0.0	-2.12	0.75	0.85	2.69	3.0	0.003	0.52	0.0	0.04	16.48	0.00	2.102	5.19	2.81	2.1	97.9	0.0	1.58	2.20	0.73	0.85	2.38	22348	2824	4	0	4	0	0	logfile
✔	6o84	0650	2022-12-11	2019-03-08	3.92	4.04	—	4.0	0.005	0.84	0.0	0.05	14.01	0.00	2.350	2.97	0.64	4.9	95.1	0.0	-5.68	0.60	0.82	2.21	4.0	0.003	0.74	0.0	0.04	16.21	0.00	2.150	8.65	0.64	5.2	94.8	0.0	1.37	1.29	0.60	0.82	2.24	6224	712	2	0	118	0	0	logfile
✔	6MWQ	9277	2022-12-14	2018-10-30	3.0	3.33	2.89	3.1	0.001	0.36	0.0	0.04	4.66	0.00	2.321	4.19	0.13	11.0	87.5	1.5	-4.81	0.54	0.39	0.22	3.1	0.003	0.70	0.0	0.04	13.25	0.00	2.183	8.34	1.48	3.6	96.1	0.2	-1.09	1.31	0.77	0.86	1.70	22072	2873	8	0	0	0	0	logfile
✔	6KFH	9973	2022-12-14	2019-07-07	3.6	3.70	—	3.7	0.007	0.73	0.0	0.05	14.75	0.00	2.255	9.85	0.00	12.3	87.7	0.0	-3.15	0.66	0.82	0.94	3.7	0.003	0.73	0.0	0.04	17.63	0.00	2.094	9.87	0.63	8.3	91.7	0.0	0.08	0.63	0.63	0.82	1.07	20840	2544	8	0	0	0	0	logfile
✘	6RKV	4912	2022-12-18	2019-04-30	4.6	4.86	—	4.5	0.002	0.53	0.0	0.04	12.80	0.00	2.207	7.23	0.00	5.3	94.7	0.0	-1.73	0.87	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15460	1784	8	64	0	0	0	logfile
✔	5ADX	2856	2022-12-22	2015-08-24	4.0	4.18	—	4.0	0.008	1.05	1.0	0.06	12.82	0.00	1.155	3.45	1.97	6.3	93.5	0.3	-2.81	0.77	0.63	—	4.0	0.004	0.71	0.0	0.04	14.81	0.00	2.081	12.00	0.29	5.6	94.4	0.0	-0.57	0.91	0.86	0.79	—	49392	4737	27	0	2569	0	0	logfile
✔	6Po3	20408	2022-12-11	2019-07-03	4.28	4.38	—	4.3	0.003	0.65	0.0	0.04	11.03	0.00	2.179	2.55	0.00	0.4	99.6	0.0	-1.68	0.75	0.75	—	4.3	0.004	0.60	0.0	0.04	13.00	0.00	1.946	10.72	0.00	4.3	95.7	0.0	-0.19	2.56	0.79	0.79	—	53225	3406	20	0	12	0	26724	logfile
✔	6T9L	10415	2022-12-14	2019-10-28	3.6	3.74	3.53	3.6	0.002	0.47	0.0	0.03	22.54	0.00	2.136	7.14	0.07	1.1	98.9	0.0	-1.63	0.74	0.68	0.82	3.6	0.004	0.64	0.0	0.04	25.05	0.00	1.954	9.36	0.30	3.3	96.7	0.0	0.94	0.83	0.84	0.84	1.19	18157	1532	18	290	8	0	0	logfile
✔	5iRZ	8118	2022-12-13	2016-03-15	3.28	3.63	3.24	3.5	0.010	1.31	0.0	0.23	16.22	0.00	2.008	9.02	0.00	7.5	92.5	0.0	-5.78	0.68	0.77	4.48	3.5	0.003	0.61	0.0	0.04	16.32	0.00	2.184	9.10	0.64	6.7	93.3	0.0	0.77	0.68	0.66	0.84	3.08	12504	1576	8	0	24	0	0	logfile
✔	6CU8	7619	2022-12-11	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.2	0.005	0.79	0.0	0.06	12.89	0.00	2.161	16.36	0.65	15.9	84.1	0.0	-3.37	1.79	0.42	0.73	2.58	2880	410	10	0	0	0	0	logfile
✔	6XYP	10651	2022-12-11	2020-01-30	3.29	3.37	3.04	3.4	0.008	0.64	0.0	0.05	13.98	0.00	2.151	8.09	0.00	2.8	97.2	0.0	-5.04	0.47	0.84	4.49	3.4	0.006	0.62	0.0	0.05	15.80	0.00	2.188	4.94	0.20	2.4	97.6	0.0	-3.45	0.35	0.47	0.84	5.05	4955	725	10	0	0	0	0	logfile
✔	5L93	4015	2022-12-16	2016-06-09	3.9	4.05	—	4.1	0.004	0.92	0.0	0.04	8.71	0.00	1.566	7.24	0.00	9.8	90.2	0.0	-2.97	0.53	0.75	1.23	4.0	0.003	0.76	0.0	0.04	16.80	0.00	2.155	11.85	0.59	6.5	93.3	0.1	0.54	1.70	0.56	0.81	1.09	31212	4032	18	0	0	0	0	logfile
✔	6XYQ	10652	2022-12-11	2020-01-30	3.09	3.30	2.79	3.3	0.007	0.71	0.0	0.05	12.97	0.00	2.130	9.08	0.00	3.5	96.5	0.0	-4.52	0.46	0.84	3.97	3.3	0.004	0.55	0.0	0.05	15.09	0.00	2.232	8.09	0.82	2.3	97.7	0.0	-3.28	0.44	0.47	0.85	4.77	4955	725	10	0	0	0	0	logfile
✔	5YRN	6842	2022-12-12	2017-11-09	4.1	3.09	3.51	6.7	0.007	1.00	0.0	0.05	10.65	0.00	2.371	8.18	0.00	4.7	95.3	0.0	-3.39	0.53	0.56	—	3.8	0.004	0.89	0.0	0.05	14.67	0.00	2.067	25.63	0.11	3.7	96.3	0.0	-0.69	2.92	0.64	0.80	—	8280	1044	12	0	0	0	0	logfile
✘	6oSM	20186	2022-12-18	2019-05-01	3.4	3.31	—	3.4	0.012	1.45	0.0	0.09	14.06	0.00	2.183	28.91	14.88	34.5	65.5	0.0	-5.34	0.46	0.74	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4100	600	10	0	0	0	0	logfile
✔	5ZBG	6911	2022-12-14	2018-02-11	4.36	4.83	—	4.5	0.005	0.70	0.0	0.04	13.89	0.00	2.258	7.82	4.79	7.0	92.7	0.3	-2.22	0.69	0.81	—	4.5	0.004	0.69	0.0	0.04	12.90	0.00	2.203	14.77	0.00	6.2	93.8	0.0	1.21	1.02	0.70	0.83	—	21260	2680	4	0	0	0	0	logfile
✔	6GH6	0002	2022-12-15	2018-05-04	4.1	4.20	—	3.9	0.004	0.91	0.0	0.05	14.40	0.00	1.934	15.55	0.38	9.7	89.3	0.9	-3.61	0.85	0.74	—	3.9	0.005	0.79	0.0	0.04	15.99	0.00	1.945	12.46	0.08	9.7	89.7	0.6	-0.99	1.78	0.87	0.81	—	28051	3482	8	96	51	0	0	logfile
✔	6RVR	10010	2022-12-20	2019-05-31	3.46	3.63	—	3.5	0.008	0.75	0.0	0.05	14.89	0.00	2.082	8.59	0.57	10.3	89.7	0.0	-4.34	0.81	0.85	2.30	3.5	0.002	0.58	0.0	0.04	15.99	0.00	2.209	6.68	0.31	7.6	92.4	0.0	-0.52	0.45	0.79	0.84	1.87	37716	4680	12	0	0	0	0	logfile

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