Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6XWR	10636	2022-04-04	2020-01-24	3.22	3.96	—	3.7	0.008	0.75	0.0	0.05	12.81	0.00	2.122	11.13	0.00	5.7	94.3	0.0	-2.71	0.74	0.85	2.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9564	1278	3	0	0	0	0	logfile
✔	6GAW	4368	2022-04-13	2018-04-13	3.2	3.22	3.04	3.2	0.007	1.09	1.0	0.05	17.08	0.00	1.785	9.47	9.18	3.8	96.1	0.2	-2.74	0.76	0.88	1.94	3.2	0.008	0.85	3.0	0.04	17.42	0.01	1.726	13.31	0.21	4.0	95.8	0.1	0.29	3.19	0.74	0.82	2.02	178372	15044	121	2664	340	5	0	logfile
✔	6Po3	20408	2022-04-04	2019-07-03	4.28	4.38	—	4.3	0.003	0.65	0.0	0.04	11.03	0.00	2.179	2.53	0.00	0.4	99.6	0.0	-1.68	0.75	0.75	—	4.3	0.004	0.60	0.0	0.04	13.22	0.00	1.936	11.71	0.04	4.7	95.3	0.0	-0.46	2.56	0.79	0.79	—	53225	3406	20	0	12	0	26724	logfile
✔	4UFT	2867	2022-04-06	2015-03-19	4.3	4.24	—	4.2	0.005	0.95	0.0	0.05	11.26	0.00	1.169	8.53	0.31	13.2	83.9	3.0	-4.63	0.54	0.70	—	4.2	0.004	0.76	0.0	0.04	13.30	0.00	2.154	10.70	0.06	7.9	91.0	1.0	-2.63	1.91	0.58	0.77	—	119847	14703	78	234	0	0	0	logfile
✔	6XWN	10632	2022-04-04	2020-01-24	3.47	4.19	—	3.9	0.004	0.61	0.0	0.04	15.63	0.00	2.121	11.01	8.00	3.3	96.7	0.0	-2.83	0.70	0.77	1.38	3.9	0.003	0.65	0.0	0.04	15.90	0.00	2.171	11.47	0.10	2.5	97.5	0.0	1.58	0.57	0.72	0.85	0.71	9547	1276	5	0	2	0	0	logfile
✔	3J9R	6271	2022-04-09	2015-02-17	3.9	3.83	—	3.8	0.006	0.89	0.0	0.04	9.86	0.00	2.112	3.86	0.89	14.5	80.8	4.7	-5.43	0.59	0.82	2.58	3.8	0.006	0.79	0.0	0.04	15.84	0.01	2.006	15.57	0.69	9.6	89.5	1.0	-2.01	1.33	0.63	0.83	1.86	103824	13788	36	0	0	0	0	logfile
✔	6Q0J	20550	2022-04-04	2019-08-01	4.9	4.69	—	4.1	0.012	1.53	3.0	0.09	8.19	0.00	2.229	2.10	0.00	5.4	93.3	1.3	-2.84	0.74	0.63	—	4.2	0.003	0.67	0.0	0.04	8.66	0.00	1.906	7.06	0.00	7.0	92.7	0.4	-0.02	1.64	0.85	0.79	—	8213	1633	8	0	6	0	0	logfile
✔	6P5N	20258	2022-04-21	2019-05-30	3.2	3.26	3.36	3.2	0.010	1.37	0.0	0.10	17.73	0.00	2.180	2.14	2.28	8.0	91.5	0.6	-4.02	0.70	0.76	2.47	3.2	0.004	0.66	2.0	0.04	17.51	0.00	1.827	9.42	0.15	5.1	94.9	0.0	-1.57	0.48	0.77	0.81	2.10	219295	11907	82	5768	0	0	0	logfile
✔	5X6o	6708	2022-04-06	2017-02-22	3.9	4.03	—	3.9	0.007	1.01	4.0	0.06	11.26	0.00	1.863	21.00	1.64	15.8	82.1	2.2	-5.44	0.60	0.72	1.68	3.9	0.009	1.01	1.0	0.04	14.78	0.00	2.185	10.61	0.29	8.2	90.4	1.3	-0.84	0.80	0.61	0.76	0.82	19309	2701	2	0	0	0	0	logfile
✔	6Y1Z	10673	2022-04-05	2020-02-14	2.82	3.48	—	3.3	0.006	0.62	0.0	0.24	14.03	0.00	2.325	3.48	2.49	2.4	97.6	0.0	-1.37	0.66	0.79	2.66	3.3	0.003	0.87	0.0	0.12	16.05	0.00	2.093	4.80	2.82	2.2	97.8	0.0	1.11	0.56	0.58	0.72	2.46	16610	1930	10	0	35	0	0	logfile
✔	6UPH	20839	2022-04-05	2019-10-17	2.7	3.01	2.85	3.0	0.007	0.67	0.0	0.04	26.16	0.00	2.216	4.33	0.00	1.8	98.2	0.0	-5.67	0.70	0.87	4.13	3.0	0.005	0.62	0.0	0.04	27.56	0.00	2.106	3.97	1.13	1.1	98.9	0.0	1.10	0.35	0.65	0.86	2.38	10677	732	10	238	0	0	0	logfile
✔	6PWo	20509	2022-04-05	2019-07-23	3.4	4.35	3.45	4.0	0.005	0.61	0.0	0.05	13.33	0.00	2.407	5.49	0.46	2.7	97.3	0.0	-0.76	0.80	0.85	1.87	4.0	0.003	0.58	0.0	0.04	14.49	0.00	2.285	5.73	0.13	2.3	97.7	0.0	2.54	1.25	0.81	0.87	1.76	14217	1862	7	0	0	0	0	logfile
✔	6NBi	0412	2022-04-04	2018-12-07	4.0	4.43	—	4.3	0.005	0.88	0.0	0.05	8.85	0.00	2.337	2.30	0.31	2.8	97.2	0.0	-1.70	0.62	0.74	—	4.3	0.004	0.87	0.0	0.05	16.32	0.01	2.143	18.36	0.62	2.7	97.3	0.0	-0.02	2.55	0.64	0.78	—	9195	1141	7	0	3	0	0	logfile
✔	6NBH	0411	2022-04-04	2018-12-07	3.5	4.06	—	4.0	0.005	0.86	0.0	0.05	8.34	0.00	2.357	1.73	0.20	2.6	97.4	0.0	-1.51	0.62	0.76	1.73	4.0	0.004	0.72	0.0	0.04	15.47	0.01	2.175	11.24	0.40	2.9	97.1	0.0	0.56	2.20	0.58	0.75	1.47	9502	1159	7	0	10	0	0	logfile
✔	6KLL	0711	2022-04-05	2019-07-30	3.0	3.78	—	3.3	0.007	0.77	0.0	0.05	15.54	0.00	1.944	7.72	7.64	5.4	94.6	0.0	-3.74	0.68	0.87	3.00	3.3	0.003	0.60	0.0	0.04	15.76	0.00	1.935	6.82	2.23	3.7	96.3	0.0	-0.23	1.17	0.67	0.89	2.50	11748	1488	8	0	8	0	0	logfile
✔	6KLN	0712	2022-04-05	2019-07-30	3.4	4.21	—	3.7	0.009	0.85	0.0	0.05	16.30	0.00	1.903	12.23	11.46	8.4	91.6	0.0	-4.65	0.70	0.88	2.12	3.7	0.003	0.64	0.0	0.04	15.02	0.00	1.934	8.84	0.16	3.7	96.3	0.0	-0.33	0.58	0.71	0.89	1.91	11748	1488	8	0	8	0	0	logfile
✔	6T59	10380	2022-04-09	2019-10-15	3.11	3.19	3.02	7.3	0.011	0.83	0.0	0.05	17.10	0.00	1.148	10.79	0.76	8.9	91.0	0.1	-5.04	0.22	0.01	0.07	3.1	0.006	0.97	0.0	0.05	19.44	0.01	0.922	26.14	0.78	9.6	90.4	0.0	-2.67	2.07	0.59	0.59	0.42	143047	7383	64	3890	225	0	0	logfile
✔	6CU8	7619	2022-04-04	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.2	0.005	0.79	0.0	0.06	12.89	0.00	2.161	16.36	0.65	15.9	84.1	0.0	-3.37	1.79	0.42	0.73	2.58	2880	410	10	0	0	0	0	logfile
✔	6V4P	21044	2022-04-04	2019-11-28	2.8	2.94	—	2.9	0.005	0.60	1.0	0.05	12.28	0.00	2.084	10.50	3.16	4.1	95.7	0.2	-2.71	0.72	0.85	4.46	2.9	0.005	0.62	0.0	0.05	15.34	0.01	2.066	9.82	2.23	4.2	95.8	0.0	-0.68	1.11	0.73	0.86	4.00	9717	1262	6	0	7	0	0	logfile
✔	6T17	10362	2022-04-13	2019-10-03	2.8	3.51	—	3.1	0.005	0.90	0.0	0.13	14.94	0.00	2.166	3.24	0.00	2.2	97.8	0.0	1.11	0.69	0.76	2.05	3.1	0.006	0.61	0.0	0.03	16.92	0.00	1.899	8.57	2.79	2.8	97.2	0.0	3.20	0.88	0.70	0.84	2.16	181940	12144	44	0	0	0	91432	logfile

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