Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3JD0	6631	2021-08-09	2016-03-28	3.47	3.93	—	3.8	0.012	0.82	0.0	0.05	10.31	0.00	1.989	14.28	0.00	13.3	85.9	0.8	-5.89	0.85	0.82	3.48	3.8	0.003	0.71	0.0	0.04	14.53	0.00	2.158	13.51	0.20	5.1	94.9	0.0	0.77	2.55	0.86	0.86	2.01	23478	2976	12	0	6	0	0	logfile
✔	6GC0	4379	2021-08-11	2018-04-16	3.8	4.10	—	4.0	0.002	0.52	0.0	0.03	12.29	0.00	2.283	3.44	0.04	5.9	94.0	0.1	-4.24	0.72	0.66	1.32	3.9	0.007	0.82	1.0	0.04	16.06	0.01	1.980	25.09	1.38	11.3	88.6	0.1	-2.38	2.63	0.78	0.77	1.18	84138	2950	28	2848	0	0	0	logfile
✔	6MHo	9115	2021-08-10	2018-09-18	3.4	3.50	3.41	3.5	0.005	0.72	0.0	0.04	7.36	0.00	2.108	2.84	0.00	2.7	97.3	0.0	-2.41	0.66	0.76	3.45	3.4	0.003	0.53	0.0	0.03	13.01	0.00	1.990	6.57	0.00	4.5	95.5	0.0	1.40	2.10	0.68	0.80	3.49	32224	2404	4	0	0	0	15184	logfile
✔	6oEU	7795	2021-08-07	2019-03-27	3.5	3.62	—	3.9	0.014	1.89	3.0	0.11	15.00	0.00	2.157	5.92	0.85	10.3	89.6	0.1	-3.81	0.41	0.65	1.69	3.7	0.003	0.68	0.0	0.04	16.82	0.01	2.237	10.45	0.14	7.4	92.6	0.0	-0.20	1.54	0.47	0.69	1.07	7310	964	1	0	8	0	0	logfile
✔	6oEo	20032	2021-08-09	2019-03-27	3.69	4.00	—	3.8	0.005	0.72	0.0	0.05	21.45	0.00	1.892	14.16	0.12	8.2	91.7	0.2	-4.21	0.84	0.84	2.52	3.8	0.003	0.67	0.0	0.04	21.66	0.00	2.148	11.20	0.12	5.8	94.1	0.1	-0.76	0.49	0.84	0.83	2.38	19516	1970	11	206	6	0	0	logfile
✔	6QG0	4543	2021-08-10	2019-01-10	4.15	4.29	4.10	4.3	0.009	1.40	20.0	0.08	18.07	0.00	0.775	5.27	5.91	10.0	87.6	2.4	-3.14	0.56	0.68	—	4.2	0.009	1.05	1.0	0.05	15.12	0.01	1.987	19.23	0.02	10.3	89.1	0.6	-1.94	1.75	0.58	0.64	—	36980	4742	16	0	0	0	0	logfile
✔	6YDP	10778	2021-08-11	2020-03-20	3.0	3.11	3.00	3.1	0.002	0.50	0.0	0.03	15.87	0.00	1.147	8.21	1.48	3.7	96.2	0.0	-2.35	0.75	0.78	1.93	3.1	0.006	0.73	1.0	0.04	17.96	0.01	1.030	12.31	3.68	5.0	94.9	0.0	-0.41	1.57	0.80	0.87	2.15	179513	15179	122	2648	339	5	0	logfile
✔	3JBR	6475	2021-08-08	2015-09-29	4.2	4.39	—	4.2	0.008	1.30	0.0	0.06	8.64	0.00	1.419	18.81	0.37	8.1	84.8	7.0	-3.43	0.66	0.70	—	4.2	0.003	0.72	0.0	0.04	10.96	0.00	2.138	11.09	0.18	10.1	87.8	2.0	-0.44	2.07	0.66	0.70	—	16467	2148	6	0	385	0	0	logfile
✔	6V1T	21017	2021-08-27	2019-11-21	3.39	3.79	—	3.8	0.010	0.94	0.0	0.06	9.90	0.00	2.083	22.10	0.96	3.5	96.3	0.2	-2.68	0.61	0.78	3.93	3.8	0.003	0.66	0.0	0.04	15.19	0.00	2.032	11.72	0.53	3.1	96.9	0.0	-1.23	0.69	0.61	0.79	2.95	248280	31260	60	0	0	0	0	logfile
✔	6U5U	20656	2021-08-09	2019-08-28	2.8	3.79	—	3.3	0.011	1.05	0.0	0.05	15.04	0.00	0.113	30.75	0.54	8.5	91.3	0.2	-4.59	0.85	0.79	1.79	3.3	0.005	0.89	0.0	0.05	16.82	0.01	1.530	21.39	2.99	5.9	94.0	0.0	-0.71	5.37	0.85	0.81	1.42	169788	21864	24	0	24	0	0	logfile
✔	6V12	21010	2021-08-29	2019-11-19	3.08	3.47	—	3.4	0.011	0.79	0.0	0.05	8.52	0.00	2.086	9.56	0.00	1.9	98.1	0.0	-1.73	0.70	0.88	5.15	3.4	0.007	0.68	0.0	0.04	14.47	0.00	2.106	8.62	0.88	3.3	96.6	0.2	-0.68	0.57	0.69	0.88	4.44	248700	31260	60	0	0	0	0	logfile
✔	6U84	20677	2021-08-09	2019-09-04	3.7	3.88	—	3.9	0.011	0.75	0.0	0.05	15.06	0.00	2.214	5.36	0.90	6.0	94.0	0.0	-2.20	0.71	0.83	1.72	3.8	0.003	0.59	0.0	0.04	16.57	0.00	2.227	7.26	0.59	3.1	96.9	0.0	1.43	0.61	0.71	0.84	1.54	20460	2520	4	0	0	0	0	logfile
✘	6V8o	21107	2021-08-09	2019-12-11	3.07	3.27	3.04	3.3	0.004	0.55	0.0	0.04	11.21	0.00	2.149	6.66	2.31	6.9	93.0	0.1	-1.57	0.67	0.77	1.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25103	3012	23	0	145	0	0	logfile
✔	6NHT	9373	2021-08-09	2018-12-23	2.9	3.26	3.11	3.3	0.006	0.75	0.0	0.04	15.21	0.00	2.394	2.27	0.45	2.1	97.9	0.0	-5.86	0.68	0.85	2.73	3.3	0.002	0.53	0.0	0.04	17.82	0.00	2.180	4.06	1.38	1.3	98.7	0.0	1.99	1.18	0.62	0.83	2.53	26136	3432	24	0	0	0	0	logfile
✔	6VAL	21142	2021-08-09	2019-12-17	3.87	4.25	—	4.2	0.005	0.74	0.0	0.04	14.40	0.00	2.052	9.20	1.02	6.0	94.0	0.0	-3.34	0.66	0.73	2.18	4.2	0.003	0.66	0.0	0.04	16.94	0.00	2.185	5.64	0.93	2.5	97.5	0.0	1.57	2.46	0.68	0.79	1.69	21615	2827	11	0	0	0	0	logfile
✔	6P1H	20235	2021-08-08	2019-05-19	3.2	3.64	—	3.5	0.009	0.89	0.0	0.05	15.83	0.00	1.939	14.44	0.07	9.2	90.2	0.7	-3.47	0.84	0.88	2.96	3.5	0.003	0.69	0.0	0.04	16.89	0.00	2.169	10.85	0.29	6.9	93.0	0.1	-1.04	0.56	0.84	0.88	2.61	13006	1539	10	27	7	44	0	logfile
✔	6G8Z	4362	2021-08-08	2018-04-10	3.66	3.88	3.72	3.8	0.005	0.77	0.0	0.04	8.70	0.00	2.362	0.22	0.00	3.8	96.2	0.0	-0.63	0.66	0.79	4.14	3.8	0.005	0.62	0.0	0.04	13.49	0.00	2.169	5.80	0.23	3.5	96.5	0.0	2.24	1.28	0.72	0.86	2.76	15966	1908	6	0	0	0	0	logfile
✔	6C3o	7338	2021-08-11	2018-01-10	3.9	3.58	—	3.6	0.006	0.92	0.0	0.05	10.43	0.00	1.661	15.20	0.32	7.4	92.6	0.0	-3.06	0.40	0.56	1.23	3.5	0.006	0.88	0.0	0.05	15.83	0.01	1.958	16.43	0.98	5.9	94.1	0.0	-0.18	3.06	0.65	0.73	1.42	49055	6472	16	0	23	0	0	logfile
✔	3JCE	6550	2021-08-17	2015-12-01	3.2	4.36	—	14.0	0.008	0.88	0.0	0.04	14.83	0.00	1.106	32.35	0.47	10.4	84.8	4.8	-2.93	0.33	0.04	0.16	9.0	0.006	0.88	3.0	0.04	16.20	0.01	1.852	30.32	0.28	9.7	89.1	1.2	-2.54	1.12	0.62	0.28	0.21	154017	6546	59	4797	3	0	0	logfile
✔	6VFX	21194	2021-08-10	2020-01-06	2.9	3.10	—	3.1	0.003	0.60	0.0	0.04	10.55	0.00	2.112	2.07	0.10	3.6	96.4	0.0	-1.34	0.59	0.59	2.34	3.1	0.003	0.62	0.0	0.04	16.89	0.00	1.854	8.29	1.78	3.9	96.1	0.0	0.08	1.61	0.70	0.80	2.38	73348	4682	27	0	18	0	36896	logfile

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