Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PoS	20418	2021-12-01	2019-07-05	4.12	4.39	—	4.2	0.003	0.68	0.0	0.04	11.58	0.01	2.116	2.48	0.00	0.1	99.9	0.0	-2.43	0.80	0.77	—	4.2	0.002	0.53	0.0	0.04	13.00	0.00	1.991	8.64	0.03	3.0	97.0	0.0	0.37	1.54	0.82	0.80	—	53503	3425	20	0	13	0	26853	logfile
✔	7NCA	12264	2021-12-02	2021-01-28	3.47	3.58	3.04	3.6	0.012	2.04	0.0	0.08	10.64	0.01	2.645	0.00	0.19	5.5	94.5	0.0	-2.04	0.73	0.85	4.45	3.7	0.002	0.53	0.0	0.05	13.06	0.00	2.393	1.34	0.19	3.8	96.2	0.0	-3.13	0.76	0.70	0.85	3.61	10428	732	12	0	0	0	5376	logfile
✔	7AWA	11928	2021-12-01	2020-11-06	3.5	3.83	—	3.6	0.003	0.64	0.0	0.04	14.22	0.00	2.126	6.77	0.00	5.8	94.2	0.0	-2.52	0.57	0.81	2.14	3.6	0.002	0.53	0.0	0.04	14.89	0.00	2.160	6.21	0.00	2.8	97.2	0.0	-0.31	1.17	0.54	0.80	1.47	5310	328	1	0	0	0	2703	logfile
✔	7BH9	12187	2021-12-01	2021-01-11	2.9	3.58	2.91	3.4	0.007	0.76	0.0	0.05	13.23	0.00	2.021	5.17	0.33	4.9	95.1	0.0	-3.10	0.85	0.88	3.70	3.4	0.002	0.53	0.0	0.04	15.21	0.00	2.179	3.33	1.00	2.1	97.9	0.0	0.84	0.39	0.81	0.85	2.44	5876	730	3	0	4	0	0	logfile
✔	6i5A	4413	2021-12-01	2018-11-13	2.3	2.34	1.50	2.3	0.012	1.84	1.0	0.10	14.16	0.01	2.431	6.70	0.74	1.3	97.4	1.3	-0.89	0.26	0.84	3.95	2.3	0.003	0.54	0.0	0.04	16.64	0.00	2.349	2.93	4.44	2.0	98.0	0.0	2.46	1.23	0.30	0.87	4.22	1206	153	1	0	0	0	0	logfile
✔	6V5V	21054	2021-12-01	2019-12-04	3.8	4.01	—	3.9	0.003	0.51	0.0	0.04	13.58	0.00	2.212	6.07	0.00	4.6	95.4	0.0	-2.04	0.52	0.82	2.06	3.9	0.002	0.54	0.0	0.04	14.64	0.00	2.192	7.93	0.30	3.2	96.8	0.0	0.28	0.57	0.53	0.82	1.76	2979	369	1	1	0	0	0	logfile
✔	7KJW	22900	2021-12-01	2020-10-26	2.9	3.11	—	3.1	0.006	0.58	0.0	0.04	13.73	0.00	2.198	4.70	0.87	2.6	97.3	0.1	0.64	0.76	0.83	4.14	3.1	0.003	0.54	0.0	0.04	15.75	0.00	2.248	8.07	1.49	2.3	97.7	0.0	0.44	0.97	0.77	0.86	4.14	8561	949	5	44	2	0	0	logfile
✔	6XLA	22237	2021-12-01	2020-06-28	3.1	3.41	—	3.3	0.005	0.65	0.0	0.04	19.84	0.00	2.276	3.37	0.00	0.2	99.8	0.0	-2.59	0.78	0.84	3.37	3.3	0.003	0.54	0.0	0.04	20.69	0.00	2.128	4.72	0.41	3.0	97.0	0.0	-0.29	1.32	0.79	0.86	3.00	5403	536	6	46	2	0	0	logfile
✔	6LN5	0924	2021-12-01	2019-12-28	2.8	2.93	2.78	2.9	0.005	0.60	0.0	0.04	12.21	0.00	2.027	5.32	0.12	2.0	98.0	0.0	-4.16	0.68	0.83	3.56	2.9	0.002	0.54	0.0	0.04	15.95	0.00	2.262	6.21	1.50	1.4	98.6	0.0	0.84	1.33	0.69	0.85	2.73	7840	1011	1	0	4	0	0	logfile
✔	7FAS	31505	2021-12-02	2021-07-07	3.6	2.95	—	3.7	0.002	0.52	0.0	0.04	15.63	0.00	2.193	9.05	0.09	4.1	95.9	0.0	0.85	0.72	0.73	0.88	3.7	0.003	0.54	0.0	0.04	17.34	0.00	2.180	9.50	0.09	5.0	95.0	0.0	1.02	0.44	0.73	0.75	0.92	10173	1229	1	0	0	0	0	logfile
✔	7JR9	22444	2021-12-01	2020-08-11	2.95	3.21	—	3.1	0.008	0.82	0.0	0.05	8.26	0.01	2.235	4.11	0.00	3.1	96.9	0.0	-2.53	0.84	0.89	5.25	3.1	0.003	0.54	0.0	0.04	13.25	0.00	2.181	6.19	1.08	2.8	97.2	0.0	0.45	0.57	0.85	0.91	5.03	10021	1300	7	0	14	0	0	logfile
✔	6T0W	10361	2021-12-02	2019-10-03	3.18	3.27	3.23	3.2	0.008	0.80	0.0	0.05	14.46	0.01	2.251	4.31	6.26	5.6	94.3	0.1	-3.70	0.72	0.85	3.43	3.2	0.003	0.54	0.0	0.04	15.19	0.00	2.209	6.61	0.18	3.0	97.0	0.0	-0.04	0.52	0.74	0.86	3.22	10556	1268	4	25	0	0	0	logfile
✔	6S7P	10111	2021-12-01	2019-07-05	3.2	3.38	—	3.4	0.009	1.13	0.0	0.08	10.36	0.01	2.085	3.44	0.33	2.8	97.2	0.0	-3.03	0.65	0.83	4.30	3.4	0.003	0.54	0.0	0.04	14.19	0.00	1.992	5.51	0.22	2.0	98.0	0.0	1.12	0.54	0.66	0.85	2.61	9028	1128	1	0	11	0	0	logfile
✔	6VQi	21351	2021-12-01	2020-02-05	4.3	4.89	—	4.2	0.005	1.14	0.0	0.05	3.90	0.01	2.327	1.95	0.00	1.3	98.2	0.5	2.16	0.56	0.73	—	3.8	0.002	0.54	0.0	0.03	3.92	0.00	2.243	3.65	0.00	5.4	94.5	0.1	3.11	0.74	0.56	0.76	—	5278	1062	8	0	0	0	0	logfile
✔	7PMY	13544	2021-12-02	2021-09-04	3.8	4.01	3.75	3.9	0.002	0.46	0.0	0.04	9.15	0.00	2.008	5.14	1.40	2.0	97.9	0.2	0.55	0.66	0.79	2.91	3.9	0.003	0.54	0.0	0.04	12.30	0.00	2.002	7.91	0.18	4.0	96.0	0.0	0.63	0.79	0.65	0.80	2.08	10499	659	2	0	0	0	5276	logfile
✔	7D3S	30566	2021-12-01	2020-09-20	2.9	2.73	2.75	2.8	0.004	0.64	0.0	0.04	13.88	0.00	2.237	10.24	0.00	4.0	96.0	0.0	-2.28	0.56	0.75	3.07	2.8	0.003	0.54	0.0	0.04	16.91	0.00	2.107	9.52	1.00	3.5	96.5	0.0	0.93	0.48	0.62	0.79	2.59	8338	1048	6	0	0	0	0	logfile
✔	7CMV	30411	2021-12-01	2020-07-29	2.7	2.91	—	2.9	0.008	0.50	0.0	0.04	12.72	0.00	2.032	3.78	0.00	1.5	98.5	0.0	2.95	0.61	0.78	2.85	2.9	0.003	0.54	0.0	0.04	15.56	0.00	2.140	5.67	1.87	2.0	98.0	0.0	1.94	0.47	0.64	0.84	3.28	8775	1123	5	0	1	0	0	logfile
✔	7NNT	12483	2021-12-01	2021-02-25	3.4	3.53	3.51	3.5	0.005	0.66	0.0	0.05	13.72	0.00	2.218	6.31	0.00	2.2	97.8	0.0	-0.55	0.67	0.82	2.48	3.5	0.003	0.54	0.0	0.04	15.49	0.00	2.209	7.47	0.00	1.3	98.7	0.0	0.87	1.05	0.68	0.84	1.76	7666	979	4	0	0	0	0	logfile
✔	6LN8	0927	2021-12-01	2019-12-28	3.1	3.26	3.33	3.3	0.003	0.56	0.0	0.04	12.81	0.00	2.051	6.74	0.00	3.0	97.0	0.0	-2.71	0.70	0.80	2.37	3.3	0.003	0.54	0.0	0.04	15.12	0.01	1.935	8.40	0.35	2.6	97.4	0.0	0.31	0.48	0.70	0.82	1.90	7739	1003	1	0	2	0	0	logfile
✔	6UY0	20945	2021-12-01	2019-11-09	3.23	3.39	—	3.4	0.014	1.85	0.0	0.08	13.82	0.00	1.861	1.22	0.00	4.3	95.7	0.0	-2.56	0.47	0.67	1.98	3.4	0.003	0.54	0.0	0.04	15.79	0.00	2.022	5.15	0.28	2.2	97.8	0.0	1.71	1.14	0.67	0.84	1.38	9684	1210	1	0	7	0	0	logfile

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