Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LCJ	23275	2022-05-12	2021-01-11	2.82	3.02	2.78	3.1	0.011	1.19	3.0	0.08	13.36	0.01	2.216	8.73	1.16	3.9	96.1	0.0	0.54	0.46	0.80	2.75	3.1	0.002	0.48	0.0	0.03	15.51	0.00	2.257	4.36	0.58	1.8	98.2	0.0	1.56	1.69	0.49	0.82	2.84	3264	390	1	0	1	17	0	logfile
✔	7oo0	13003	2022-05-14	2021-05-26	3.1	3.05	2.96	3.1	0.012	1.13	0.0	0.07	12.80	0.00	2.131	7.27	0.00	3.1	96.9	0.0	-1.80	0.61	0.78	2.85	3.1	0.003	0.48	0.0	0.04	13.87	0.00	2.313	6.05	0.00	1.5	98.5	0.0	1.59	1.54	0.63	0.80	2.28	16016	1834	14	0	56	0	0	logfile
✔	7D4P	30575	2022-05-15	2020-09-24	2.7	3.03	2.86	3.0	0.007	0.80	0.0	0.04	13.57	0.00	2.269	4.70	0.67	1.2	98.8	0.0	2.42	0.58	0.76	3.11	3.0	0.002	0.48	0.0	0.03	15.83	0.00	2.208	4.35	1.01	0.9	99.1	0.0	2.71	0.61	0.59	0.78	2.69	22472	2676	8	0	28	0	0	logfile
✔	7oZU	13135	2022-05-12	2021-06-28	3.3	3.27	3.22	3.4	0.007	0.52	0.0	0.04	12.44	0.00	2.218	6.28	0.00	3.1	96.9	0.0	0.39	0.62	0.79	3.13	3.4	0.003	0.48	0.0	0.04	14.81	0.00	2.049	7.74	0.23	2.8	97.2	0.0	0.45	1.89	0.75	0.86	3.16	8408	991	6	22	2	0	0	logfile
✔	7JMC	22391	2022-05-17	2020-07-31	2.5	2.76	2.68	2.7	0.010	1.29	0.0	0.06	13.90	0.01	2.249	2.77	0.57	1.6	98.4	0.0	3.40	0.62	0.82	4.76	2.7	0.003	0.48	0.0	0.04	13.42	0.00	2.126	5.15	1.71	1.1	98.9	0.0	3.44	0.68	0.65	0.86	4.05	39828	2304	36	0	144	168	18576	logfile
✔	7MQB	23941	2022-05-15	2021-05-05	3.25	3.29	3.22	3.3	0.007	0.72	0.0	0.05	13.00	0.00	2.302	3.12	0.66	0.5	99.5	0.0	1.28	0.81	0.86	4.28	3.3	0.003	0.48	0.0	0.04	14.47	0.00	2.141	4.03	0.82	2.5	97.5	0.0	1.13	0.37	0.82	0.89	4.88	12760	1640	16	16	0	0	0	logfile
✔	7D4Q	30576	2022-05-15	2020-09-24	2.74	2.99	2.80	3.0	0.009	0.78	0.0	0.04	12.13	0.00	2.254	6.42	0.67	1.4	98.6	0.0	2.70	0.47	0.71	3.84	3.0	0.003	0.48	0.0	0.03	15.53	0.00	2.196	6.27	1.13	1.4	98.6	0.0	2.53	0.44	0.69	0.87	3.86	22388	2672	8	0	24	0	0	logfile
✔	6VRS	21371	2022-05-13	2020-02-09	2.7	3.22	—	2.9	0.008	1.49	5.0	0.11	14.48	0.01	2.012	2.56	1.82	3.1	96.6	0.3	-0.31	0.95	0.92	6.32	2.9	0.003	0.48	0.0	0.04	15.01	0.00	2.074	6.04	0.17	2.3	97.7	0.0	2.16	1.00	0.94	0.90	4.35	12208	1548	12	0	8	16	0	logfile
✔	7JGF	22325	2022-05-12	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.85	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.8	0.002	0.48	0.0	0.04	13.28	0.00	2.151	52.69	0.41	5.2	94.8	0.0	1.10	0.63	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	7oZV	13138	2022-05-12	2021-06-28	3.2	3.08	3.16	3.3	0.007	0.58	0.0	0.04	13.29	0.01	2.202	8.59	0.00	2.6	97.4	0.0	-0.22	0.64	0.79	3.09	3.3	0.003	0.48	0.0	0.04	15.36	0.00	2.139	8.29	0.00	2.3	97.7	0.0	-0.10	1.89	0.73	0.83	2.74	8409	991	6	22	2	0	0	logfile
✔	7PXH	13703	2022-05-16	2021-10-08	2.59	3.11	2.60	3.0	0.006	0.81	0.0	0.04	13.72	0.00	2.079	4.27	0.45	1.8	98.2	0.0	0.70	0.77	0.87	3.60	3.0	0.002	0.48	0.0	0.04	15.27	0.00	2.211	5.76	1.36	2.0	98.0	0.0	1.21	0.42	0.76	0.89	3.59	28922	3540	8	0	39	0	0	logfile
✔	7SMM	25202	2022-05-14	2021-10-26	2.5	2.86	—	2.7	0.005	0.72	0.0	0.04	14.54	0.00	2.099	3.62	0.00	4.1	95.9	0.0	1.36	0.80	0.86	4.48	2.7	0.002	0.48	0.0	0.04	14.92	0.00	2.266	5.13	1.07	3.2	96.8	0.0	1.88	0.31	0.81	0.88	4.00	17256	2030	20	0	39	63	0	logfile
✔	7V21	31633	2022-05-13	2021-08-07	3.08	3.18	—	3.1	0.004	0.73	0.0	0.05	13.48	0.00	2.266	4.96	0.31	2.6	97.3	0.1	0.95	0.72	0.87	3.52	3.1	0.002	0.49	0.0	0.04	14.88	0.00	2.158	5.72	0.08	2.4	97.6	0.0	1.49	0.44	0.73	0.88	3.00	11903	1505	4	0	0	0	0	logfile
✔	7VFD	31949	2022-05-13	2021-09-13	2.25	2.33	2.21	2.3	0.004	0.53	0.0	0.05	12.47	0.00	2.204	3.85	0.60	3.7	96.3	0.0	-0.65	0.81	0.88	6.01	2.3	0.002	0.49	0.0	0.05	15.37	0.00	2.246	3.23	0.47	2.1	97.9	0.0	0.43	1.13	0.80	0.88	5.42	13262	1623	6	0	0	350	0	logfile
✔	7WHN	32505	2022-05-13	2021-12-31	3.3	2.99	—	3.2	0.009	0.80	0.0	0.05	13.81	0.01	2.147	7.75	0.10	4.5	95.5	0.0	-1.29	0.41	0.83	2.92	3.2	0.002	0.49	0.0	0.04	15.01	0.00	2.268	5.58	0.19	2.4	97.6	0.0	1.01	0.40	0.37	0.80	2.24	9284	1170	1	0	0	0	0	logfile
✔	7P0M	13148	2022-05-15	2021-06-30	2.75	3.51	2.75	2.7	0.002	0.44	0.0	0.04	16.31	0.00	1.800	7.70	1.88	1.7	98.3	0.0	1.65	0.95	0.88	2.52	2.8	0.002	0.49	0.0	0.04	16.49	0.00	2.005	9.02	2.07	1.7	98.3	0.0	1.67	0.24	0.96	0.89	2.22	25185	3185	19	0	45	0	0	logfile
✔	7MSX	23971	2022-05-12	2021-05-12	3.15	3.24	3.04	3.2	0.008	0.62	0.0	0.05	10.30	0.00	2.385	0.95	0.00	1.9	98.1	0.0	0.06	0.77	0.85	3.76	3.2	0.003	0.49	0.0	0.04	15.13	0.00	2.210	5.43	0.49	2.1	97.9	0.0	1.21	1.12	0.79	0.87	3.16	3706	473	1	0	3	0	0	logfile
✔	7LFT	23306	2022-05-14	2021-01-18	2.6	2.42	—	2.6	0.009	1.10	0.0	0.06	14.80	0.00	1.832	8.91	0.25	2.5	97.5	0.0	-0.82	0.69	0.87	4.43	2.5	0.003	0.49	0.0	0.04	16.13	0.00	2.239	8.97	1.79	2.0	98.0	0.0	1.63	0.55	0.72	0.88	4.28	15479	1800	12	0	35	4	0	logfile
✔	7KoD	22972	2022-05-14	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	2.0	0.005	0.49	0.0	0.04	13.81	0.00	1.858	2.53	0.27	0.6	99.4	0.0	5.26	0.58	0.88	0.94	8.02	68186	4128	48	0	0	1727	32643	logfile
✔	7K0L	22601	2022-05-12	2020-09-04	3.4	3.83	—	3.7	0.004	0.60	0.0	0.04	12.59	0.00	2.141	4.54	0.00	1.9	98.1	0.0	1.09	0.74	0.87	3.05	3.7	0.003	0.49	0.0	0.04	13.88	0.00	2.204	5.39	0.25	2.1	97.9	0.0	0.97	1.04	0.74	0.88	2.79	7619	964	4	0	2	0	0	logfile

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