Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ALY	15520	2023-11-19	2022-08-01	2.98	3.34	—	3.3	0.005	0.61	0.0	0.04	16.13	0.00	2.108	5.86	0.36	4.7	95.3	0.0	-1.52	0.75	0.86	3.87	3.3	0.002	0.46	0.0	0.04	17.31	0.00	1.928	5.43	1.74	3.3	96.7	0.0	-0.10	1.10	0.72	0.86	3.52	41300	5180	40	0	20	0	0	logfile
✔	8J9Z	36120	2023-11-15	2023-05-05	3.13	3.40	3.17	3.4	0.002	0.41	0.0	0.04	16.68	0.00	2.177	4.52	0.15	2.2	97.8	0.0	1.31	0.68	0.81	3.00	3.4	0.002	0.46	0.0	0.04	17.01	0.00	2.156	5.51	0.00	1.9	98.1	0.0	1.02	0.28	0.72	0.85	2.93	12154	1494	2	0	0	0	0	logfile
✔	7oNJ	12996	2023-11-16	2021-05-25	2.3	2.52	2.24	2.5	0.009	0.86	0.0	0.05	18.33	0.00	2.155	8.48	0.47	0.8	99.2	0.0	-0.25	0.76	0.88	5.16	2.5	0.002	0.46	0.0	0.04	18.08	0.00	2.173	8.46	0.61	0.8	99.2	0.0	2.22	1.14	0.75	0.89	4.38	16947	1834	21	0	63	266	0	logfile
✔	6U5N	20650	2023-11-15	2019-08-28	3.2	3.32	—	3.3	0.006	0.76	0.0	0.05	14.13	0.01	1.907	2.80	0.15	4.8	95.2	0.0	-3.09	0.72	0.84	2.62	3.3	0.002	0.46	0.0	0.05	15.73	0.00	2.145	5.34	0.44	2.3	97.7	0.0	0.97	1.21	0.67	0.84	2.00	13262	1776	24	0	24	8	0	logfile
✔	8EoB	28333	2023-11-15	2022-10-02	3.1	3.53	3.19	3.4	0.005	0.61	0.0	0.04	11.24	0.00	1.945	7.00	1.78	2.6	97.4	0.0	0.42	0.76	0.84	3.12	3.4	0.002	0.46	0.0	0.04	13.80	0.00	2.018	6.55	0.00	2.3	97.7	0.0	0.85	0.55	0.75	0.83	2.59	10141	1245	4	0	4	0	0	logfile
✔	7PiM	13442	2023-11-15	2021-08-20	4.6	5.02	5.18	4.6	0.002	0.41	0.0	0.03	8.31	0.00	1.900	45.64	0.67	2.0	98.0	0.0	2.23	0.81	0.76	—	4.6	0.002	0.46	0.0	0.03	12.01	0.00	1.854	66.59	0.00	3.2	96.8	0.0	0.47	1.02	0.82	0.76	—	11844	1412	12	0	8	0	524	logfile
✔	8ADi	15363	2023-11-18	2022-07-08	3.4	3.67	3.39	3.7	0.003	0.52	0.0	0.04	14.25	0.01	1.491	4.93	0.08	4.4	95.6	0.0	-0.36	0.69	0.83	3.58	3.7	0.003	0.46	0.0	0.04	14.95	0.00	1.958	5.31	0.40	5.3	94.7	0.0	-0.07	0.24	0.66	0.85	3.10	23141	1505	6	0	0	0	11353	logfile
✔	8iHQ	35452	2023-11-18	2023-02-23	2.71	2.92	2.80	3.0	0.004	0.59	0.0	0.05	16.58	0.01	2.095	4.22	0.62	1.6	98.4	0.0	-0.68	0.69	0.86	4.05	2.9	0.002	0.46	0.0	0.04	16.77	0.00	2.099	3.82	2.19	1.3	98.7	0.0	-0.14	0.19	0.71	0.87	3.87	24128	3192	16	0	16	0	0	logfile
✔	8SiK	40508	2023-11-16	2023-04-16	2.9	3.14	2.92	3.2	0.003	0.51	0.0	0.04	15.67	0.00	2.206	6.55	0.96	1.7	98.3	0.0	2.43	0.56	0.79	4.00	3.2	0.002	0.47	0.0	0.04	16.00	0.00	2.245	6.49	1.51	2.2	97.8	0.0	2.72	0.22	0.64	0.84	3.66	15832	1984	12	0	8	0	0	logfile
✔	8AP9	15562	2023-11-17	2022-08-09	3.7	3.41	3.21	3.4	0.006	0.48	0.0	0.04	9.77	0.00	2.191	2.85	0.40	1.9	98.1	0.0	-0.08	0.57	0.83	3.96	3.4	0.003	0.47	0.0	0.04	13.31	0.00	2.198	4.43	0.10	3.4	96.6	0.0	-1.47	1.39	0.63	0.86	3.25	19658	1285	14	0	1	0	9972	logfile
✔	7YQC	34023	2023-11-15	2022-08-06	2.82	2.99	2.80	3.0	0.013	1.86	24.0	0.13	16.60	0.01	2.497	5.68	9.34	1.3	98.7	0.0	3.07	0.65	0.81	2.22	3.0	0.003	0.47	0.0	0.04	17.63	0.00	2.311	5.90	4.17	1.5	98.5	0.0	3.64	0.50	0.65	0.82	2.02	11396	1386	7	0	0	0	0	logfile
✔	7o6Q	12740	2023-11-14	2021-04-12	1.88	2.21	—	1.9	0.010	0.71	0.0	0.05	12.80	0.01	2.115	4.83	1.25	3.2	96.8	0.0	-1.61	0.88	0.85	7.59	1.9	0.002	0.47	0.0	0.04	14.51	0.00	2.189	4.70	1.63	0.8	99.2	0.0	3.42	0.36	0.90	0.90	6.06	7999	997	8	0	0	399	0	logfile
✔	7SQV	25396	2023-11-13	2021-11-06	2.3	2.95	2.29	2.8	0.001	0.38	0.0	0.04	16.08	0.00	2.314	1.47	0.63	0.7	99.3	0.0	1.86	0.76	0.88	3.59	2.8	0.003	0.47	0.0	0.04	16.30	0.00	2.295	1.36	1.67	1.1	98.9	0.0	1.71	1.99	0.77	0.90	3.84	4471	573	5	0	0	7	0	logfile
✔	7YVQ	34136	2023-11-20	2022-08-19	3.18	3.50	3.32	3.3	0.004	0.58	0.0	0.04	14.17	0.00	2.131	6.40	0.75	6.2	93.8	0.0	-0.26	0.79	0.87	3.43	3.3	0.002	0.47	0.0	0.04	14.98	0.00	2.207	6.67	0.49	4.8	95.2	0.0	0.12	1.28	0.79	0.89	3.08	30742	3874	15	0	21	0	0	logfile
✔	8A05	15048	2023-11-13	2022-05-26	3.4	3.47	3.11	3.5	0.002	0.43	0.0	0.05	12.67	0.00	2.328	2.02	0.00	2.2	97.8	0.0	0.42	0.37	0.84	2.71	3.5	0.003	0.47	0.0	0.05	14.61	0.00	2.266	4.03	0.00	2.2	97.8	0.0	0.40	1.25	0.36	0.85	2.71	764	91	2	0	5	0	0	logfile
✔	7JGF	22325	2023-11-13	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.74	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.8	0.002	0.47	0.0	0.04	13.18	0.00	2.190	46.28	0.41	4.8	95.2	0.0	1.10	0.62	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	7oRK	13040	2023-11-17	2021-06-06	3.1	3.05	—	3.1	0.007	0.79	2.0	0.05	13.58	0.00	1.996	5.31	1.04	3.2	96.8	0.0	0.32	0.83	0.89	4.27	3.1	0.003	0.47	0.0	0.04	14.65	0.00	1.970	5.82	0.15	2.6	97.4	0.0	1.03	0.32	0.84	0.91	4.06	18699	2182	7	36	5	48	0	logfile
✔	7RHi	24462	2023-11-16	2021-07-17	3.31	3.09	—	3.2	0.012	0.71	0.0	0.05	13.66	0.00	2.230	6.80	0.00	3.1	96.9	0.0	-0.39	0.68	0.83	1.85	3.2	0.002	0.47	0.0	0.04	14.90	0.00	2.245	10.56	0.25	3.0	97.0	0.0	1.45	0.89	0.70	0.86	1.92	14717	1784	8	0	4	0	0	logfile
✔	8FU6	29453	2023-11-14	2023-01-16	2.9	3.13	2.94	3.2	0.002	0.60	0.0	0.04	12.46	0.00	2.199	3.83	0.00	2.6	97.4	0.0	0.07	0.58	0.80	3.34	3.2	0.002	0.47	0.0	0.04	15.19	0.00	2.200	4.35	1.16	1.9	98.1	0.0	1.22	0.39	0.59	0.81	2.58	8834	1112	6	0	0	0	0	logfile
✔	8iP3	35630	2023-11-15	2023-03-14	2.6	3.21	2.64	3.0	0.002	0.42	0.0	0.04	10.76	0.00	2.255	5.46	0.00	1.9	98.1	0.0	3.79	0.76	0.84	3.68	3.0	0.003	0.47	0.0	0.04	13.60	0.00	2.264	6.70	1.06	2.0	98.0	0.0	3.60	0.34	0.71	0.81	3.55	12868	1595	10	0	13	0	0	logfile

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