Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TC8	25805	2023-04-25	2021-12-23	2.4	2.46	—	2.5	0.008	0.68	0.0	0.05	17.52	0.00	1.659	12.50	3.31	2.3	97.7	0.0	0.38	0.74	0.86	5.19	2.5	0.003	0.47	0.0	0.04	17.56	0.00	1.800	15.88	2.86	2.2	97.8	0.0	1.50	0.26	0.74	0.87	5.15	20567	2113	8	0	4	0	3200	logfile
✔	8AP9	15562	2023-04-25	2022-08-09	3.7	3.41	3.21	3.4	0.006	0.48	0.0	0.04	9.61	0.00	2.191	2.85	0.40	1.9	98.1	0.0	-0.08	0.57	0.83	3.96	3.4	0.003	0.47	0.0	0.04	13.17	0.00	2.147	3.87	0.00	3.2	96.8	0.0	-1.39	1.39	0.63	0.86	3.40	19658	1285	14	0	1	0	9972	logfile
✔	8A05	15048	2023-04-19	2022-05-26	3.4	3.47	3.11	3.5	0.002	0.43	0.0	0.05	12.67	0.00	2.328	2.02	0.00	2.2	97.8	0.0	0.42	0.37	0.84	2.71	3.5	0.003	0.47	0.0	0.05	14.61	0.00	2.266	4.03	0.00	2.2	97.8	0.0	0.40	1.25	0.36	0.85	2.71	764	91	2	0	5	0	0	logfile
✔	7YVQ	34136	2023-04-29	2022-08-19	3.18	3.50	3.32	3.3	0.004	0.58	0.0	0.04	14.17	0.00	2.131	6.40	0.75	6.2	93.8	0.0	-0.26	0.79	0.87	3.43	3.3	0.002	0.47	0.0	0.04	14.98	0.00	2.207	6.67	0.49	4.8	95.2	0.0	0.12	1.28	0.79	0.89	3.08	30742	3874	15	0	21	0	0	logfile
✔	7oZV	13138	2023-04-20	2021-06-28	3.2	3.08	3.16	3.3	0.007	0.58	0.0	0.04	13.23	0.01	2.202	8.41	0.00	2.6	97.4	0.0	-0.22	0.64	0.79	3.09	3.3	0.002	0.47	0.0	0.04	15.35	0.00	2.152	7.80	0.34	2.3	97.7	0.0	0.17	1.89	0.72	0.83	2.83	8409	991	6	22	2	0	0	logfile
✔	7MQi	23948	2023-04-26	2021-05-05	3.21	3.01	3.19	3.2	0.006	0.79	0.0	0.05	12.23	0.00	2.202	2.71	0.59	1.4	98.6	0.0	0.80	0.67	0.81	4.51	3.1	0.002	0.47	0.0	0.04	14.20	0.00	2.125	3.56	0.17	2.3	97.7	0.0	1.41	1.80	0.74	0.86	4.11	12696	1640	16	16	0	0	0	logfile
✔	7Z0Z	14435	2023-04-21	2022-02-24	2.68	2.92	2.79	2.8	0.006	0.72	6.0	0.05	14.67	0.00	2.092	7.37	0.54	1.9	98.0	0.2	0.45	0.74	0.86	4.83	2.8	0.003	0.48	0.0	0.04	16.57	0.00	2.174	5.16	1.06	2.0	97.8	0.2	1.32	0.44	0.78	0.90	4.34	29466	3510	6	0	0	0	0	logfile
✔	7MQF	23945	2023-04-26	2021-05-05	2.88	2.74	2.86	2.8	0.006	0.72	0.0	0.06	11.73	0.00	2.175	1.01	0.00	0.5	99.5	0.0	1.24	0.72	0.87	6.16	2.7	0.003	0.48	0.0	0.04	13.43	0.00	2.255	2.60	0.00	1.0	99.0	0.0	1.00	0.44	0.78	0.91	5.71	12288	1608	16	16	0	0	0	logfile
✔	6MRW	9214	2023-04-22	2018-10-15	4.3	4.76	—	4.3	0.006	0.98	0.0	0.04	10.35	0.01	2.080	4.61	0.41	2.1	97.9	0.0	-0.19	0.82	0.84	—	4.3	0.002	0.48	0.0	0.03	11.78	0.00	2.084	7.07	0.00	1.9	98.1	0.0	6.00	1.27	0.83	0.86	—	31346	3990	14	0	0	0	0	logfile
✔	7USW	26741	2023-04-23	2022-04-26	3.1	3.48	3.14	3.5	0.004	0.78	0.0	0.04	15.91	0.01	2.254	7.09	0.21	3.1	96.9	0.0	2.17	0.63	0.80	2.13	3.5	0.002	0.48	0.0	0.04	16.01	0.00	2.249	5.38	0.35	3.2	96.8	0.0	2.29	0.27	0.63	0.82	2.11	14322	1676	12	0	68	0	0	logfile
✔	7NKD	12438	2023-04-21	2021-02-17	3.12	3.57	—	3.2	0.003	0.45	0.0	0.04	14.50	0.00	2.134	6.59	0.00	1.7	98.3	0.0	2.45	0.85	0.81	2.57	3.2	0.003	0.48	0.0	0.04	15.43	0.00	2.128	7.12	0.00	1.5	98.5	0.0	3.15	0.91	0.85	0.83	2.19	9555	643	8	0	0	0	4768	logfile
✔	7oJN	12956	2023-04-24	2021-05-16	2.92	3.27	2.89	2.9	0.004	0.41	0.0	0.04	9.23	0.00	1.859	3.51	0.93	4.7	95.2	0.1	0.93	0.88	0.83	3.05	3.0	0.003	0.48	0.0	0.04	12.90	0.00	2.095	5.50	1.53	5.0	95.0	0.0	0.73	2.62	0.91	0.90	3.01	16991	2010	6	39	7	0	0	logfile
✔	7RHi	24462	2023-04-23	2021-07-17	3.31	3.09	—	3.2	0.012	0.71	0.0	0.05	13.67	0.00	2.230	6.80	0.00	3.1	96.9	0.0	-0.39	0.68	0.83	1.85	3.2	0.002	0.48	0.0	0.04	14.97	0.00	2.238	11.27	0.25	2.9	97.1	0.0	1.39	0.89	0.70	0.87	1.92	14717	1784	8	0	4	0	0	logfile
✔	7RZU	24778	2023-04-19	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.002	0.48	0.0	0.03	15.88	0.00	2.308	6.69	1.40	0.0	100.0	0.0	5.49	0.47	0.80	0.81	1.54	2439	324	6	0	0	0	0	logfile
✔	7K0N	22604	2023-04-24	2020-09-04	3.1	3.55	—	3.5	0.004	0.69	0.0	0.04	13.94	0.00	2.227	6.22	0.32	2.5	97.5	0.0	0.72	0.73	0.82	2.88	3.5	0.002	0.48	0.0	0.04	15.30	0.00	2.253	5.17	0.05	2.0	98.0	0.0	1.15	1.06	0.72	0.84	2.63	18470	2340	14	0	18	0	0	logfile
✔	8F7B	28901	2023-04-23	2022-11-18	3.15	3.53	3.17	3.5	0.005	0.79	0.0	0.04	17.29	0.00	2.263	5.78	0.23	2.4	97.6	0.0	1.06	0.63	0.79	2.19	3.5	0.002	0.48	0.0	0.04	16.28	0.00	2.227	7.36	0.34	2.1	97.9	0.0	2.15	1.13	0.59	0.79	2.11	16166	1894	18	0	17	6	0	logfile
✔	7XTZ	33453	2023-04-19	2022-05-18	2.8	2.99	2.73	2.9	0.012	0.90	0.0	0.05	13.57	0.00	2.204	0.77	0.42	3.2	96.8	0.0	-0.29	0.83	0.84	4.09	2.9	0.002	0.48	0.0	0.04	14.33	0.00	2.060	2.70	0.70	3.1	96.9	0.0	0.02	0.30	0.83	0.86	3.72	51900	3291	21	0	75	0	25032	logfile
✔	8DBG	27283	2023-04-23	2022-06-14	2.2	2.20	2.25	2.2	0.007	0.69	0.0	0.05	15.18	0.00	1.958	4.92	1.97	3.4	96.6	0.0	0.54	0.71	0.86	6.29	2.2	0.002	0.48	0.0	0.05	16.08	0.00	1.996	5.40	2.23	3.3	96.7	0.0	1.17	0.31	0.74	0.90	5.48	14442	1854	18	0	30	12	0	logfile
✔	7XKQ	33264	2023-04-27	2022-04-20	3.3	3.61	3.27	3.3	0.003	0.50	0.0	0.04	13.48	0.00	1.967	4.96	0.00	2.0	98.0	0.0	1.22	0.86	0.89	2.81	3.3	0.002	0.48	0.0	0.04	14.84	0.00	1.983	6.06	0.11	2.2	97.8	0.0	1.46	0.40	0.87	0.91	2.38	25299	3259	15	0	13	0	0	logfile
✔	8E28	27828	2023-04-20	2022-08-14	3.1	3.26	3.15	3.2	0.004	0.83	0.0	0.05	16.45	0.01	2.316	3.83	0.00	1.5	98.5	0.0	-1.72	0.75	0.85	3.17	3.2	0.002	0.48	0.0	0.04	17.09	0.00	2.204	5.32	0.49	1.5	98.5	0.0	0.26	0.73	0.76	0.87	2.64	5789	690	2	15	0	0	0	logfile

• ← previous
• Page 3 of 372
• next →