Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oo0	13003	2022-07-04	2021-05-26	3.1	3.05	2.96	3.1	0.012	1.13	0.0	0.07	12.80	0.00	2.131	7.27	0.00	3.1	96.9	0.0	-1.80	0.61	0.78	2.85	3.1	0.003	0.48	0.0	0.04	13.87	0.00	2.313	6.05	0.00	1.5	98.5	0.0	1.59	1.54	0.63	0.80	2.28	16016	1834	14	0	56	0	0	logfile
✔	7SMM	25202	2022-07-04	2021-10-26	2.5	2.86	—	2.7	0.005	0.72	0.0	0.04	14.54	0.00	2.099	3.62	0.00	4.1	95.9	0.0	1.36	0.80	0.86	4.48	2.7	0.002	0.48	0.0	0.04	14.92	0.00	2.266	5.13	1.07	3.2	96.8	0.0	1.88	0.31	0.81	0.88	4.00	17256	2030	20	0	39	63	0	logfile
✔	7oo8	13007	2022-07-04	2021-05-26	3.7	2.99	3.39	3.0	0.003	0.40	0.0	0.04	9.89	0.00	2.286	6.45	0.00	1.9	98.1	0.0	2.79	0.65	0.79	2.44	3.0	0.003	0.48	0.0	0.04	14.96	0.00	2.291	10.06	0.27	1.2	98.8	0.0	2.49	0.46	0.65	0.79	2.25	13923	1827	7	0	0	0	0	logfile
✔	7JMC	22391	2022-07-07	2020-07-31	2.5	2.76	2.68	2.7	0.010	1.29	0.0	0.06	13.90	0.01	2.249	2.77	0.57	1.6	98.4	0.0	3.40	0.62	0.82	4.76	2.7	0.003	0.48	0.0	0.04	13.42	0.00	2.126	5.15	1.71	1.1	98.9	0.0	3.44	0.68	0.65	0.86	4.05	39828	2304	36	0	144	168	18576	logfile
✔	7MQF	23945	2022-07-05	2021-05-05	2.88	2.74	2.86	2.8	0.006	0.72	0.0	0.06	11.73	0.00	2.175	1.47	0.00	0.5	99.5	0.0	1.24	0.72	0.87	6.16	2.7	0.003	0.48	0.0	0.04	13.44	0.00	2.256	3.06	0.00	1.0	99.0	0.0	1.02	0.44	0.80	0.91	5.71	12288	1608	16	16	0	0	0	logfile
✔	7LCJ	23275	2022-07-02	2021-01-11	2.82	3.02	2.78	3.1	0.011	1.19	3.0	0.08	13.36	0.01	2.216	8.73	1.16	3.9	96.1	0.0	0.54	0.46	0.80	2.75	3.1	0.002	0.48	0.0	0.03	15.51	0.00	2.257	4.36	0.58	1.8	98.2	0.0	1.56	1.69	0.49	0.82	2.84	3264	390	1	0	1	17	0	logfile
✔	6VRS	21371	2022-07-03	2020-02-09	2.7	3.22	—	2.9	0.008	1.49	5.0	0.11	14.48	0.01	2.012	2.56	1.82	3.1	96.6	0.3	-0.31	0.95	0.92	6.32	2.9	0.003	0.48	0.0	0.04	15.01	0.00	2.074	6.04	0.17	2.3	97.7	0.0	2.16	1.00	0.94	0.90	4.35	12208	1548	12	0	8	16	0	logfile
✔	7SiP	25147	2022-07-03	2021-10-14	3.0	3.27	—	3.3	0.011	1.17	0.0	0.04	16.74	0.01	2.313	3.17	0.00	0.9	99.1	0.0	0.93	0.63	0.81	2.85	3.3	0.003	0.49	0.0	0.04	15.47	0.00	2.222	3.43	1.74	0.5	99.5	0.0	1.36	0.99	0.61	0.83	2.67	7560	892	12	0	36	20	0	logfile
✔	7UB0	26433	2022-07-05	2022-03-14	3.31	3.57	3.27	3.4	0.003	0.47	0.0	0.04	13.05	0.00	2.205	5.06	0.04	2.0	98.0	0.0	-0.12	0.85	0.86	3.45	3.4	0.004	0.49	0.0	0.04	13.94	0.00	2.159	5.24	0.15	2.5	97.5	0.0	0.29	0.23	0.86	0.88	3.33	24993	3109	16	0	50	0	0	logfile
✔	7NG9	12310	2022-07-04	2021-02-08	3.3	3.48	3.33	3.5	0.007	0.48	0.0	0.04	14.72	0.00	2.250	4.23	0.85	3.6	96.4	0.0	-0.87	0.62	0.80	4.09	3.5	0.003	0.49	0.0	0.03	15.82	0.00	2.122	6.92	0.09	2.5	97.5	0.0	2.16	2.59	0.70	0.86	3.35	19368	1263	3	0	0	0	9615	logfile
✔	7Z19	14445	2022-07-06	2022-02-24	2.57	3.23	2.58	3.0	0.005	0.62	0.0	0.04	13.36	0.00	2.000	6.87	0.28	2.6	97.4	0.0	1.13	0.78	0.88	4.29	3.0	0.003	0.49	0.0	0.04	14.88	0.00	2.033	6.78	0.33	2.2	97.8	0.0	1.61	0.31	0.77	0.88	4.36	34105	2174	21	0	6	477	16717	logfile
✔	7MQD	23943	2022-07-05	2021-05-05	3.25	3.21	3.21	3.3	0.003	0.62	0.0	0.05	13.35	0.00	2.456	2.33	0.00	1.0	99.0	0.0	1.04	0.75	0.83	3.89	3.3	0.003	0.49	0.0	0.04	14.25	0.00	2.268	4.31	0.00	1.1	98.9	0.0	1.76	1.29	0.78	0.87	4.30	11960	1592	16	16	0	0	0	logfile
✔	6ZBG	11154	2022-07-04	2020-06-08	3.2	3.97	3.37	3.6	0.010	1.15	0.0	0.07	13.62	0.01	2.468	1.13	0.00	1.1	98.9	0.0	0.72	0.84	0.78	2.20	3.6	0.002	0.49	0.0	0.03	15.27	0.00	2.144	4.35	0.00	0.8	99.2	0.0	4.36	1.86	0.85	0.79	1.37	19534	1160	4	0	0	0	9902	logfile
✔	7RH9	24458	2022-07-04	2021-07-16	2.61	2.09	—	2.5	0.003	0.57	0.0	0.04	13.27	0.01	2.214	5.89	0.00	1.3	98.7	0.0	1.30	0.64	0.84	4.07	2.5	0.003	0.49	0.0	0.04	15.66	0.00	2.167	8.77	0.87	1.6	98.4	0.0	2.64	0.91	0.64	0.86	3.93	14680	1792	4	0	0	0	0	logfile
✔	7P54	13194	2022-07-03	2021-07-14	3.3	3.29	3.21	3.5	0.003	0.51	0.0	0.04	13.48	0.00	2.206	7.14	0.00	1.7	98.3	0.0	4.08	0.53	0.76	1.07	3.5	0.003	0.49	0.0	0.05	15.89	0.00	2.239	6.98	0.15	2.0	98.0	0.0	4.49	1.36	0.55	0.78	1.13	6248	794	8	0	12	0	0	logfile
✔	7NJU	12423	2022-07-04	2021-02-17	3.74	3.93	—	3.8	0.003	0.47	0.0	0.04	14.41	0.00	2.064	6.27	0.00	4.0	96.0	0.0	2.44	0.63	0.83	1.57	3.8	0.003	0.49	0.0	0.04	15.41	0.00	2.105	7.00	0.00	2.0	98.0	0.0	4.84	0.33	0.64	0.83	1.26	16438	1119	12	0	0	0	8341	logfile
✔	7K0L	22601	2022-07-03	2020-09-04	3.4	3.83	—	3.7	0.004	0.60	0.0	0.04	12.59	0.00	2.141	4.54	0.00	1.9	98.1	0.0	1.09	0.74	0.87	3.05	3.7	0.003	0.49	0.0	0.04	13.88	0.00	2.204	5.39	0.25	2.1	97.9	0.0	0.97	1.04	0.74	0.88	2.79	7619	964	4	0	2	0	0	logfile
✔	7NJV	12424	2022-07-04	2021-02-17	2.9	2.81	—	2.9	0.003	0.60	0.0	0.04	13.24	0.00	2.179	6.55	0.00	2.5	97.5	0.0	2.26	0.65	0.88	2.67	2.9	0.004	0.49	0.0	0.04	15.43	0.00	2.132	5.27	0.91	2.0	98.0	0.0	2.71	0.30	0.65	0.90	2.63	16463	1118	13	0	1	0	8337	logfile
✔	7TiK	25912	2022-07-02	2022-01-13	2.4	2.38	—	2.0	0.007	0.49	0.0	0.04	16.31	0.00	2.218	8.52	0.00	4.6	95.4	0.0	1.31	0.77	0.80	1.31	2.0	0.004	0.49	0.0	0.04	16.44	0.00	2.228	10.65	1.01	0.3	99.7	0.0	5.49	0.93	0.79	0.80	1.38	2565	339	6	0	0	0	0	logfile
✔	7S4X	24838	2022-07-04	2021-09-09	2.76	3.30	—	3.1	0.006	0.60	0.0	0.04	17.12	0.00	1.878	7.16	0.00	4.0	96.0	0.0	0.02	0.87	0.89	4.31	3.1	0.002	0.49	0.0	0.04	17.49	0.00	1.987	7.88	0.66	3.0	97.0	0.0	1.08	0.32	0.83	0.88	3.46	14491	1354	10	161	5	7	0	logfile

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