Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LFX	23308	2021-08-08	2021-01-19	3.1	2.80	—	3.0	0.010	0.65	0.0	0.05	13.33	0.00	2.226	9.82	0.25	2.3	97.7	0.0	-1.18	0.64	0.81	2.40	3.0	0.002	0.50	0.0	0.04	15.81	0.00	2.247	12.71	0.43	2.7	97.3	0.0	1.04	0.82	0.66	0.84	2.34	14846	1800	8	0	6	0	0	logfile
✔	7LPA	23474	2021-08-08	2021-02-11	3.37	3.43	3.23	3.5	0.008	1.33	0.0	0.04	16.94	0.00	2.201	7.68	0.00	4.1	95.9	0.0	-0.82	0.56	0.74	2.45	3.5	0.003	0.51	0.0	0.04	16.01	0.00	2.242	5.85	0.36	3.2	96.8	0.0	1.09	0.43	0.61	0.78	2.09	18634	2392	8	0	30	0	0	logfile
✔	7oDF	12827	2021-08-07	2021-04-29	2.66	3.20	—	3.1	0.003	0.49	0.0	0.04	16.48	0.00	1.952	6.12	0.00	1.4	98.6	0.0	1.47	0.75	0.83	3.58	3.1	0.002	0.51	0.0	0.04	17.71	0.00	2.024	7.47	2.35	2.1	97.9	0.0	1.92	0.89	0.72	0.82	3.20	6847	703	7	78	2	5	0	logfile
✔	6YE4	10789	2021-08-07	2020-03-24	3.2	3.33	3.07	3.3	0.026	1.69	0.0	0.10	14.61	0.01	2.373	3.02	0.00	0.9	99.1	0.0	-3.36	0.73	0.88	2.50	3.3	0.003	0.51	0.0	0.03	16.37	0.00	2.352	4.69	0.11	2.2	97.8	0.0	3.69	0.94	0.72	0.88	1.56	9140	1180	10	0	5	0	0	logfile
✔	7D4P	30575	2021-08-09	2020-09-24	2.7	3.03	2.86	3.0	0.017	1.34	0.0	0.17	13.97	0.01	2.269	4.62	0.67	1.2	98.8	0.0	2.42	0.58	0.76	3.11	3.0	0.002	0.51	0.0	0.03	15.73	0.00	2.268	5.55	0.84	0.8	99.2	0.0	2.69	1.61	0.63	0.81	2.71	22472	2676	8	0	28	0	0	logfile
✔	6oJQ	20092	2021-08-09	2019-04-12	3.67	3.91	—	3.8	0.008	0.78	0.0	0.04	10.32	0.00	2.000	3.54	0.00	4.0	96.0	0.0	-3.02	0.57	0.74	2.96	3.8	0.002	0.51	0.0	0.04	13.06	0.00	1.940	7.91	0.00	3.3	96.7	0.0	-0.54	2.74	0.65	0.82	3.02	18055	1164	5	0	4	0	8878	logfile
✔	7NG9	12310	2021-08-08	2021-02-08	3.3	3.48	3.33	3.5	0.007	0.48	0.0	0.04	14.72	0.00	2.250	4.13	0.85	3.6	96.4	0.0	-0.87	0.62	0.80	4.09	3.5	0.004	0.51	0.0	0.03	15.83	0.00	2.133	7.13	0.09	2.7	97.3	0.0	2.01	2.72	0.69	0.85	3.51	19368	1263	3	0	0	0	9615	logfile
✔	7LRD	23495	2021-08-08	2021-02-16	3.22	4.04	3.18	3.2	0.005	0.47	0.0	0.04	7.69	0.00	1.795	4.51	0.25	1.3	98.7	0.0	2.71	0.82	0.76	2.88	3.2	0.004	0.51	0.0	0.04	10.61	0.00	1.798	7.87	0.00	2.2	97.7	0.1	2.52	1.20	0.90	0.88	2.65	14346	1766	8	0	8	0	0	logfile
✔	7A2i	11625	2021-08-07	2020-08-18	3.3	3.94	3.40	3.8	0.004	0.62	0.0	0.04	12.87	0.00	2.232	7.09	0.00	7.0	93.0	0.0	-1.94	0.81	0.84	2.69	3.8	0.002	0.51	0.0	0.04	13.99	0.00	2.230	5.75	0.11	3.8	96.2	0.0	-0.13	1.21	0.82	0.85	2.35	9196	1217	2	0	1	0	0	logfile
✔	7B03	11955	2021-08-07	2020-11-18	2.93	2.97	—	2.9	0.005	0.90	0.0	0.04	13.62	0.00	2.190	7.91	0.00	1.9	98.1	0.0	1.34	0.69	0.81	1.85	2.9	0.003	0.51	0.0	0.04	16.38	0.00	2.119	7.90	2.03	1.5	98.5	0.0	1.62	0.43	0.68	0.82	1.44	8670	1085	10	0	5	0	0	logfile
✔	6WHG	21672	2021-08-08	2020-04-08	3.1	2.89	3.05	3.1	0.009	1.19	0.0	0.07	16.99	0.01	2.284	2.65	1.98	3.1	96.9	0.0	-1.32	0.66	0.80	3.24	3.1	0.003	0.51	0.0	0.04	17.04	0.00	2.124	9.21	0.17	2.6	97.4	0.0	2.21	1.15	0.66	0.82	2.97	17116	2092	8	0	12	0	0	logfile
✔	7MTS	23996	2021-08-08	2021-05-13	3.2	3.09	—	3.0	0.008	0.81	0.0	0.05	13.26	0.01	2.213	4.32	0.13	3.1	96.9	0.0	0.41	0.83	0.84	2.92	3.0	0.002	0.51	0.0	0.04	14.44	0.00	2.195	3.81	0.13	2.6	97.4	0.0	0.59	0.30	0.83	0.85	2.37	16068	2150	7	0	3	0	0	logfile
✔	6U6D	20663	2021-08-08	2019-08-29	3.6	3.73	—	3.7	0.002	0.51	0.0	0.04	12.89	0.00	2.227	6.53	0.00	3.4	96.6	0.0	-4.06	0.79	0.84	1.77	3.7	0.002	0.51	0.0	0.04	15.61	0.00	2.146	6.59	0.27	3.4	96.6	0.0	0.00	0.53	0.82	0.84	2.26	16770	2156	10	0	2	0	0	logfile
✔	6YW5	10958	2021-08-08	2020-04-29	2.85	2.95	2.83	2.9	0.002	0.37	0.0	0.03	10.00	0.00	1.841	2.48	0.14	1.6	98.4	0.0	-2.99	0.73	0.86	5.10	2.9	0.003	0.51	0.0	0.03	14.01	0.00	1.907	4.18	0.59	2.2	97.8	0.0	1.39	0.64	0.73	0.88	3.97	167548	7528	47	1435	120	0	76656	logfile
✔	7K0N	22604	2021-08-08	2020-09-04	3.1	3.55	—	3.5	0.005	0.74	0.0	0.04	14.62	0.00	2.227	6.22	0.32	2.5	97.5	0.0	0.72	0.73	0.82	2.88	3.5	0.003	0.51	0.0	0.04	15.48	0.00	2.247	5.74	0.26	2.6	97.4	0.0	0.90	1.06	0.74	0.84	2.69	18470	2340	14	0	18	0	0	logfile
✔	7JLW	22382	2021-08-11	2020-07-30	2.5	2.52	2.49	2.5	0.009	1.07	0.0	0.07	15.06	0.00	2.377	3.99	1.14	1.1	98.9	0.0	0.51	0.62	0.82	4.64	2.5	0.003	0.51	0.0	0.04	15.79	0.00	2.042	6.09	1.42	0.7	99.3	0.0	3.05	1.01	0.66	0.85	4.04	40284	2316	36	0	132	204	18720	logfile
✔	6UGD	20761	2021-08-08	2019-09-26	3.5	3.93	—	3.8	0.006	1.00	0.0	0.05	14.47	0.01	2.082	3.49	0.23	7.4	92.5	0.1	-4.95	0.65	0.69	1.81	3.8	0.002	0.51	0.0	0.04	16.01	0.00	2.051	4.99	0.00	4.0	96.0	0.0	-1.05	1.58	0.72	0.82	1.21	13928	1865	13	0	11	0	0	logfile
✔	6UZY	20964	2021-08-08	2019-11-15	3.38	3.52	—	3.5	0.010	0.97	7.0	0.07	15.99	0.01	2.265	6.91	0.00	2.6	97.4	0.0	-3.44	0.66	0.82	2.53	3.5	0.003	0.51	0.0	0.04	15.55	0.00	2.295	5.74	0.11	2.6	97.4	0.0	1.81	0.35	0.66	0.83	2.00	16212	1946	14	0	21	0	0	logfile
✔	6VXM	21444	2021-08-08	2020-02-22	3.06	3.76	—	3.4	0.018	1.29	0.0	0.05	12.84	0.00	2.208	5.57	0.00	3.9	96.1	0.0	-2.02	0.75	0.81	2.38	3.4	0.004	0.51	0.0	0.04	13.24	0.00	2.271	4.50	0.12	3.0	97.0	0.0	1.97	1.20	0.73	0.85	2.48	15064	1939	14	0	21	0	0	logfile
✔	6ZBE	11152	2021-08-09	2020-06-08	3.3	4.04	3.36	3.7	0.010	1.16	0.0	0.08	13.39	0.01	2.470	1.08	0.00	0.8	99.2	0.0	0.61	0.84	0.76	1.69	3.7	0.002	0.51	0.0	0.03	15.46	0.00	2.065	4.97	0.18	1.5	98.5	0.0	4.22	1.88	0.86	0.80	1.21	19534	1160	4	0	0	0	9902	logfile

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