Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oRK	13040	2022-12-14	2021-06-06	3.1	3.05	—	3.1	0.007	0.71	2.0	0.05	13.57	0.00	1.996	5.50	1.04	3.2	96.8	0.0	0.32	0.83	0.89	4.27	3.1	0.003	0.47	0.0	0.04	14.67	0.00	1.984	6.01	0.15	2.8	97.2	0.0	0.97	0.32	0.84	0.91	4.13	18699	2182	7	36	5	48	0	logfile
✔	7E4T	30987	2022-12-14	2021-02-15	3.0	3.26	3.08	3.3	0.007	0.79	0.0	0.04	13.89	0.00	2.278	6.59	1.01	1.1	98.9	0.0	0.77	0.50	0.68	3.26	3.3	0.002	0.47	0.0	0.03	16.68	0.00	2.181	5.83	3.34	1.2	98.8	0.0	2.36	1.24	0.70	0.85	3.19	22276	2656	8	0	24	0	0	logfile
✔	6UCB	20727	2022-12-18	2019-09-15	3.28	3.46	—	3.5	0.009	0.76	0.0	0.05	13.85	0.01	2.152	5.80	0.00	5.1	94.9	0.0	-3.14	0.64	0.76	2.69	3.4	0.002	0.47	0.0	0.04	14.66	0.00	2.121	9.27	0.06	3.7	96.3	0.0	0.65	0.93	0.66	0.80	2.70	32324	2044	16	0	30	0	15694	logfile
✔	7YVQ	34136	2022-12-16	2022-08-19	3.18	3.50	3.32	3.3	0.004	0.58	0.0	0.04	14.17	0.00	2.131	6.44	0.75	6.2	93.8	0.0	-0.26	0.79	0.87	3.43	3.3	0.002	0.47	0.0	0.04	15.00	0.00	2.200	6.91	0.49	5.0	95.0	0.0	0.04	1.28	0.79	0.89	3.03	30742	3874	15	0	21	0	0	logfile
✔	7YHP	33835	2022-12-11	2022-07-14	3.1	3.03	3.01	3.1	0.007	0.55	0.0	0.04	18.78	0.00	2.216	8.38	1.81	4.1	95.9	0.0	0.44	0.68	0.76	3.14	3.1	0.002	0.47	0.0	0.03	20.86	0.00	2.126	10.86	0.00	3.6	96.4	0.0	0.63	0.72	0.68	0.78	2.89	3815	374	4	38	1	0	0	logfile
✔	6C9i	7436	2022-12-15	2018-01-26	3.09	3.21	—	3.2	0.029	1.48	0.0	0.12	9.22	0.01	2.417	1.04	0.00	0.3	99.6	0.1	2.36	0.79	0.85	4.97	3.2	0.004	0.47	0.0	0.04	15.04	0.00	2.229	5.61	0.12	0.0	100.0	0.0	3.66	2.42	0.72	0.90	3.62	23700	3087	24	0	0	0	0	logfile
✔	7RUG	24705	2022-12-11	2021-08-17	4.7	5.03	4.07	4.8	0.003	0.50	0.0	0.04	12.58	0.00	1.920	12.90	0.00	1.6	98.4	0.0	3.26	0.59	0.66	—	4.8	0.002	0.47	0.0	0.03	13.18	0.00	1.968	13.09	0.00	1.6	98.4	0.0	3.44	1.24	0.60	0.66	—	5429	331	2	0	0	0	2728	logfile
✔	7Z0Z	14435	2022-12-12	2022-02-24	2.68	2.92	2.79	2.8	0.006	0.72	6.0	0.05	14.67	0.00	2.092	7.47	0.54	1.9	98.0	0.2	0.45	0.74	0.86	4.83	2.8	0.003	0.47	0.0	0.04	16.45	0.00	2.181	5.41	0.97	2.0	97.8	0.2	1.39	0.45	0.78	0.90	4.28	29466	3510	6	0	0	0	0	logfile
✔	7SFJ	25079	2022-12-11	2021-10-04	2.74	3.33	—	3.4	0.007	0.94	0.0	0.04	18.41	0.01	2.308	4.07	1.28	2.5	97.5	0.0	2.20	0.62	0.78	3.51	3.4	0.002	0.47	0.0	0.04	17.60	0.00	2.280	5.02	1.28	3.1	96.9	0.0	2.40	0.47	0.57	0.77	3.08	7377	852	9	0	24	3	0	logfile
✔	7S6D	24875	2022-12-12	2021-09-13	3.1	3.82	—	3.4	0.005	0.71	0.0	0.04	13.49	0.00	2.083	3.46	0.00	3.4	96.6	0.0	-0.10	0.86	0.81	3.05	3.4	0.003	0.47	0.0	0.04	14.14	0.00	2.025	5.78	0.00	3.8	96.2	0.0	0.32	1.12	0.86	0.83	3.01	46193	3112	8	0	1	0	22846	logfile
✔	7o6Q	12740	2022-12-11	2021-04-12	1.88	2.21	—	1.9	0.010	0.71	0.0	0.05	12.80	0.01	2.115	4.83	1.25	3.2	96.8	0.0	-1.61	0.88	0.85	7.59	1.9	0.002	0.47	0.0	0.04	14.46	0.00	2.188	5.37	1.63	0.8	99.2	0.0	3.35	0.36	0.90	0.90	6.06	7999	997	8	0	0	399	0	logfile
✔	8AG4	15415	2022-12-12	2022-07-19	2.46	2.04	2.48	1.7	0.003	0.49	0.0	0.04	13.59	0.00	2.170	5.34	0.00	3.9	96.1	0.0	0.77	0.82	0.83	4.04	1.7	0.002	0.47	0.0	0.04	15.71	0.00	2.188	6.06	1.03	3.2	96.8	0.0	0.97	0.89	0.81	0.83	3.75	11155	1384	4	0	0	0	0	logfile
✔	7SiP	25147	2022-12-11	2021-10-14	3.0	3.27	—	3.3	0.011	1.17	0.0	0.04	16.74	0.01	2.313	3.17	0.00	0.9	99.1	0.0	0.93	0.63	0.81	2.85	3.3	0.003	0.48	0.0	0.04	15.60	0.00	2.203	3.43	1.74	0.7	99.3	0.0	1.27	0.99	0.59	0.83	2.64	7560	892	12	0	36	20	0	logfile
✔	7SMS	25207	2022-12-13	2021-10-26	3.18	3.33	—	3.3	0.006	0.73	0.0	0.05	15.02	0.00	2.187	5.29	0.00	2.8	97.2	0.0	1.21	0.78	0.85	3.74	3.3	0.002	0.48	0.0	0.04	15.07	0.00	2.207	6.87	0.11	1.9	98.1	0.0	1.85	1.14	0.78	0.86	3.35	17051	2015	15	0	32	0	0	logfile
✔	7MQF	23945	2022-12-15	2021-05-05	2.88	2.74	2.86	2.8	0.006	0.72	0.0	0.06	11.73	0.00	2.175	1.47	0.00	0.5	99.5	0.0	1.24	0.72	0.87	6.16	2.7	0.003	0.48	0.0	0.04	13.44	0.00	2.256	3.06	0.00	1.0	99.0	0.0	1.02	0.44	0.78	0.91	5.71	12288	1608	16	16	0	0	0	logfile
✔	7oZV	13138	2022-12-12	2021-06-28	3.2	3.08	3.16	3.3	0.007	0.58	0.0	0.04	13.29	0.01	2.202	8.59	0.00	2.6	97.4	0.0	-0.22	0.64	0.79	3.09	3.3	0.003	0.48	0.0	0.04	15.36	0.00	2.139	8.29	0.00	2.3	97.7	0.0	-0.10	1.89	0.72	0.83	2.74	8409	991	6	22	2	0	0	logfile
✔	7NKQ	12446	2022-12-12	2021-02-18	2.98	3.25	—	3.1	0.004	0.49	0.0	0.04	13.52	0.00	2.018	7.16	0.00	2.7	97.3	0.0	1.39	0.81	0.81	2.98	3.1	0.003	0.48	0.0	0.04	15.76	0.00	2.010	7.06	0.87	2.3	97.7	0.0	2.24	0.31	0.82	0.84	2.58	10621	714	8	0	0	0	5312	logfile
✔	7RHL	24465	2022-12-13	2021-07-17	3.03	2.43	—	2.7	0.003	0.56	0.0	0.04	13.97	0.00	2.217	5.53	0.00	1.5	98.5	0.0	1.66	0.63	0.84	3.54	2.7	0.003	0.48	0.0	0.04	15.00	0.00	2.177	8.90	0.19	1.3	98.7	0.0	2.85	0.34	0.63	0.86	3.51	15371	1932	4	0	0	0	0	logfile
✔	7K5C	22680	2022-12-21	2020-09-16	2.7	2.91	—	2.9	0.004	0.53	0.0	0.04	14.17	0.00	2.201	4.90	0.00	3.2	96.8	0.0	1.14	0.71	0.85	3.23	2.9	0.002	0.48	0.0	0.04	17.30	0.00	2.131	5.04	0.96	2.8	97.2	0.0	2.52	0.44	0.66	0.83	2.61	41547	5268	24	0	0	219	0	logfile
✔	7WHM	32504	2022-12-12	2021-12-31	2.7	2.86	—	2.8	0.006	0.64	0.0	0.05	13.85	0.00	2.155	6.35	0.00	3.1	96.9	0.0	0.15	0.43	0.87	4.68	2.9	0.002	0.48	0.0	0.04	15.99	0.00	2.270	5.83	0.65	2.5	97.5	0.0	1.56	1.12	0.41	0.85	3.68	9650	1214	1	0	0	0	0	logfile

• ← previous
• Page 3 of 443
• next →