Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WBi	21590	2022-05-13	2020-03-26	4.39	4.98	—	3.3	0.015	0.91	0.0	0.04	10.97	0.01	2.117	12.17	1.00	4.8	95.1	0.0	-0.82	0.70	0.80	—	3.3	0.002	0.61	0.0	0.04	9.93	0.00	2.197	5.92	0.00	3.2	96.8	0.0	3.29	0.52	0.72	0.84	—	13018	2284	8	0	1	0	0	logfile
✔	6YYT	11007	2022-05-13	2020-05-06	2.9	3.28	3.09	3.2	0.003	0.47	0.0	0.04	14.59	0.00	2.258	2.82	0.36	2.9	97.1	0.0	-0.98	0.80	0.82	2.65	3.2	0.002	0.56	0.0	0.04	15.90	0.00	2.173	8.64	2.35	2.6	97.4	0.0	1.18	0.45	0.79	0.85	2.79	11375	1298	9	54	2	0	0	logfile
✔	6Wi0	21681	2022-05-16	2020-04-08	4.27	4.76	—	4.5	0.005	0.77	2.0	0.06	13.39	0.00	2.134	16.88	0.60	10.2	89.6	0.2	-4.55	0.62	0.68	—	4.5	0.002	0.64	2.0	0.04	12.68	0.00	2.127	8.44	0.00	7.3	92.6	0.1	-1.01	0.49	0.71	0.78	—	21964	3112	10	0	10	0	0	logfile
✔	6UW6	20918	2022-05-14	2019-11-04	3.66	3.79	—	3.8	0.015	1.24	0.0	0.07	16.71	0.01	2.299	5.68	0.00	8.4	91.6	0.0	-4.85	0.70	0.84	2.14	3.8	0.002	0.62	0.0	0.04	17.32	0.00	2.188	7.71	0.42	6.0	94.0	0.0	0.52	0.59	0.69	0.83	1.59	20072	2408	8	0	20	0	0	logfile
✔	6UW4	20917	2022-05-14	2019-11-04	3.1	3.24	—	3.2	0.015	1.18	0.0	0.07	17.29	0.01	2.280	4.16	0.00	5.8	94.2	0.0	-4.45	0.72	0.84	1.94	3.2	0.002	0.57	0.0	0.04	16.25	0.00	2.193	5.92	0.09	5.9	94.1	0.0	-0.01	0.56	0.72	0.86	1.31	20281	2412	8	0	21	0	0	logfile
✔	6SiH	10210	2022-05-17	2019-08-09	4.7	5.01	—	4.7	0.005	0.54	0.0	0.03	12.61	0.00	1.931	8.52	0.00	5.9	94.1	0.0	-1.62	0.89	0.79	—	4.7	0.002	0.58	0.0	0.04	13.41	0.00	2.088	10.17	0.00	5.0	95.0	0.0	0.95	1.58	0.90	0.82	—	37310	4880	10	0	0	0	0	logfile
✔	6D3R	7793	2022-05-12	2018-04-16	4.3	4.80	4.40	4.5	0.017	1.75	0.0	0.10	9.07	0.01	2.385	0.71	0.00	1.5	98.5	0.0	0.66	0.66	0.76	—	4.5	0.002	0.65	0.0	0.04	11.84	0.00	2.257	6.79	0.00	2.2	97.8	0.0	1.88	1.21	0.68	0.77	—	7610	1127	1	0	2	0	0	logfile
✔	6L3V	0827	2022-05-14	2019-10-15	2.63	2.90	2.72	2.9	0.011	0.89	0.0	0.04	17.00	0.01	2.218	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	2.9	0.002	0.58	0.0	0.03	16.57	0.00	2.198	2.61	1.21	0.5	99.5	0.0	2.37	3.59	0.59	0.87	2.85	19416	1206	12	0	6	0	9528	logfile
✔	6T0V	10360	2022-05-14	2019-10-03	3.02	3.10	3.02	3.1	0.009	0.81	0.0	0.05	15.74	0.01	1.859	6.75	7.38	4.9	95.1	0.0	-3.31	0.66	0.83	3.33	3.1	0.002	0.54	0.0	0.04	16.45	0.00	1.951	8.93	0.15	2.9	97.1	0.0	0.20	0.64	0.66	0.84	2.61	18604	2190	8	43	8	0	0	logfile
✔	7JM9	22390	2022-05-18	2020-07-31	2.5	2.71	2.65	2.7	0.009	1.47	0.0	0.07	13.53	0.00	2.291	3.08	0.56	1.1	98.9	0.0	0.10	0.62	0.82	5.25	2.7	0.002	0.46	0.0	0.04	13.55	0.00	2.085	6.38	1.27	1.4	98.6	0.0	3.63	0.72	0.64	0.85	4.54	41136	2328	36	0	168	156	18876	logfile
✔	6X0V	21985	2022-05-12	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.46	0.0	0.04	13.09	0.00	2.230	19.17	0.00	6.0	94.0	0.0	2.59	1.22	0.40	0.75	—	1384	211	4	0	0	0	62	logfile
✔	6XF6	22162	2022-05-15	2020-06-15	4.0	4.88	4.07	4.1	0.004	0.77	0.0	0.06	11.35	0.01	2.249	3.78	0.21	2.6	97.4	0.0	0.03	0.85	0.78	—	4.2	0.002	0.58	0.0	0.04	12.73	0.00	2.109	10.16	0.09	2.9	97.1	0.0	0.50	1.22	0.87	0.83	—	22938	2928	18	0	59	0	0	logfile
✔	6W21	21521	2022-05-18	2020-03-04	3.3	4.10	—	3.5	0.006	0.72	0.0	0.04	13.64	0.00	1.978	16.40	0.91	2.5	97.4	0.1	-1.12	0.88	0.81	1.93	3.5	0.002	0.58	0.0	0.04	14.95	0.00	2.192	10.22	0.04	2.8	97.2	0.0	0.90	1.54	0.89	0.87	2.01	48327	6123	27	0	36	0	0	logfile
✔	6VRH	21368	2022-05-12	2020-02-07	3.3	3.68	3.56	3.6	0.002	0.53	0.0	0.04	12.92	0.00	2.212	9.91	0.00	5.1	94.9	0.0	-3.01	0.45	0.70	2.12	3.6	0.002	0.55	0.0	0.04	14.99	0.00	2.136	9.50	0.15	5.7	94.3	0.0	-0.65	0.58	0.51	0.75	1.75	6142	764	4	0	5	0	0	logfile
✔	7JL0	22368	2022-05-13	2020-07-29	4.3	3.67	—	4.0	0.008	1.40	1.0	0.05	14.11	0.00	1.860	13.90	0.14	6.6	93.4	0.0	-1.52	0.75	0.77	—	4.0	0.002	0.91	0.0	0.04	13.95	0.00	1.962	10.63	0.00	3.5	96.5	0.0	0.37	1.43	0.77	0.79	—	7354	842	5	28	4	0	0	logfile
✔	6Z80	11113	2022-05-17	2020-06-02	3.0	3.21	—	3.2	0.016	1.22	0.0	0.07	9.98	0.01	2.030	3.48	0.00	3.4	96.2	0.4	-3.67	0.70	0.73	3.14	3.2	0.002	0.63	0.0	0.05	16.08	0.00	2.129	6.69	2.26	3.4	96.6	0.0	-0.22	2.53	0.66	0.76	1.98	21460	2660	40	0	20	0	0	logfile
✔	7BWM	30233	2022-05-14	2020-04-15	2.9	2.97	—	2.9	0.005	0.78	0.0	0.05	14.21	0.00	2.048	7.48	7.21	5.8	94.0	0.3	-3.28	0.76	0.85	4.49	2.9	0.002	0.61	0.0	0.04	15.57	0.00	2.132	6.73	2.05	4.9	95.1	0.0	-0.79	1.13	0.77	0.85	3.39	9532	1219	1	0	0	0	0	logfile
✔	6PLZ	20381	2022-05-13	2019-07-01	3.0	3.68	—	3.5	0.006	0.94	0.0	0.06	9.68	0.01	2.338	4.58	0.00	5.3	94.7	0.0	-5.25	0.60	0.85	4.29	3.5	0.002	0.64	0.0	0.04	15.65	0.00	2.145	9.22	2.33	2.8	97.2	0.0	-0.48	1.07	0.54	0.83	3.19	14210	1725	15	0	20	0	0	logfile
✔	6PM3	20385	2022-05-13	2019-07-01	3.0	3.08	—	3.0	0.009	1.05	0.0	0.06	9.18	0.01	2.322	4.71	0.00	5.0	95.0	0.0	-4.50	0.71	0.88	4.96	3.0	0.002	0.60	0.0	0.04	15.60	0.00	2.164	9.59	2.54	4.9	95.1	0.0	0.62	0.71	0.72	0.91	4.18	14120	1725	15	0	15	0	0	logfile
✔	6QSU	4629	2022-05-15	2019-02-22	2.4	2.64	2.56	2.6	0.006	0.64	0.0	0.05	13.49	0.00	1.918	4.91	0.61	4.6	95.4	0.0	0.27	0.81	0.87	4.68	2.6	0.002	0.53	0.0	0.04	16.53	0.00	1.949	6.16	0.91	3.2	96.8	0.0	0.40	1.15	0.73	0.86	4.20	75758	9684	60	0	36	1178	0	logfile

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