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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5VLZ | 8709 | 2024-03-20 | 2017-04-26 | 4.4 | 4.55 | — | 4.4 | 0.006 | 0.89 | 0.0 | 0.00 | 5.88 | 0.00 | 2.272 | 2.04 | 0.00 | 6.1 | 93.9 | 0.0 | -1.92 | 0.80 | 0.66 | — | 4.4 | 0.002 | 0.73 | 0.0 | 0.00 | 4.75 | 0.00 | 2.276 | 0.95 | 0.00 | 4.8 | 95.2 | 0.0 | -0.40 | 2.02 | 0.83 | 0.78 | — | 96897 | 24179 | 181 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JLo | 22375 | 2024-03-15 | 2020-07-30 | 3.4 | 3.49 | 3.31 | 3.5 | 0.004 | 0.60 | 0.0 | 0.04 | 14.68 | 0.00 | 2.203 | 5.74 | 0.46 | 5.2 | 94.8 | 0.0 | -2.15 | 0.72 | 0.86 | 2.66 | 3.5 | 0.002 | 0.49 | 0.0 | 0.04 | 16.16 | 0.00 | 2.210 | 4.62 | 1.47 | 4.2 | 95.8 | 0.0 | 1.06 | 1.27 | 0.71 | 0.87 | 2.46 | 11964 | 1455 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8iWE | 35765 | 2024-03-10 | 2023-03-29 | 3.4 | 3.95 | 3.24 | 3.8 | 0.004 | 0.93 | 1.0 | 0.07 | 16.00 | 0.00 | 2.321 | 10.10 | 2.84 | 5.9 | 94.1 | 0.0 | -0.50 | 0.58 | 0.79 | 2.37 | 3.8 | 0.002 | 0.59 | 0.0 | 0.04 | 15.57 | 0.00 | 2.180 | 4.59 | 1.90 | 5.2 | 94.8 | 0.0 | 0.40 | 1.01 | 0.63 | 0.86 | 1.79 | 2236 | 296 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6PP6 | 20420 | 2024-03-22 | 2019-07-05 | 4.28 | 4.54 | — | 4.3 | 0.004 | 0.71 | 0.0 | 0.04 | 12.43 | 0.00 | 2.179 | 3.17 | 0.00 | 0.6 | 99.4 | 0.0 | -1.13 | 0.79 | 0.78 | — | 4.3 | 0.002 | 0.53 | 0.0 | 0.04 | 12.60 | 0.00 | 1.987 | 9.45 | 0.00 | 3.2 | 96.8 | 0.0 | -0.16 | 1.50 | 0.81 | 0.81 | — | 32106 | 2062 | 13 | 0 | 12 | 0 | 16126 | logfile |
✔ | 8oXA | 17262 | 2024-03-15 | 2023-05-01 | 2.76 | 3.17 | 2.79 | 3.1 | 0.003 | 0.53 | 0.0 | 0.04 | 15.25 | 0.00 | 1.910 | 4.77 | 0.00 | 3.9 | 96.1 | 0.0 | -0.27 | 0.66 | 0.79 | 4.10 | 3.1 | 0.002 | 0.54 | 0.0 | 0.04 | 15.99 | 0.00 | 2.019 | 7.42 | 2.34 | 3.1 | 96.9 | 0.0 | 0.52 | 0.36 | 0.64 | 0.80 | 3.40 | 11138 | 1363 | 6 | 0 | 8 | 11 | 0 | logfile |
✔ | 8PT2 | 17866 | 2024-03-18 | 2023-07-13 | 2.59 | 2.37 | 2.57 | 2.6 | 0.002 | 0.45 | 0.0 | 0.04 | 17.64 | 0.00 | 1.885 | 2.40 | 1.37 | 3.6 | 96.4 | 0.0 | 1.25 | 0.74 | 0.88 | 4.57 | 2.6 | 0.002 | 0.47 | 0.0 | 0.04 | 17.63 | 0.00 | 1.914 | 2.31 | 1.63 | 3.6 | 96.4 | 0.0 | 1.30 | 0.26 | 0.74 | 0.89 | 4.58 | 22091 | 1355 | 8 | 27 | 3 | 1 | 10901 | logfile |
✔ | 7Y5G | 33619 | 2024-03-10 | 2022-06-17 | 3.85 | 4.19 | 3.81 | 4.2 | 0.002 | 0.43 | 0.0 | 0.04 | 12.74 | 0.00 | 2.084 | 2.19 | 0.00 | 0.7 | 99.3 | 0.0 | -0.05 | 0.63 | 0.72 | 1.21 | 4.1 | 0.002 | 0.51 | 0.0 | 0.04 | 15.53 | 0.00 | 2.012 | 5.62 | 2.45 | 1.0 | 99.0 | 0.0 | 1.56 | 0.67 | 0.65 | 0.75 | 0.12 | 4736 | 604 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 7L1K | 23110 | 2024-03-11 | 2020-12-14 | 3.16 | 3.38 | 3.16 | 3.4 | 0.011 | 1.35 | 5.0 | 0.27 | 16.53 | 0.01 | 2.317 | 5.62 | 0.75 | 9.8 | 89.9 | 0.3 | -6.55 | 0.73 | 0.88 | 3.48 | 3.4 | 0.002 | 0.65 | 0.0 | 0.04 | 16.14 | 0.00 | 2.220 | 7.84 | 1.62 | 7.5 | 92.5 | 0.0 | -1.89 | 0.94 | 0.75 | 0.89 | 2.66 | 7217 | 883 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7U2L | 26314 | 2024-03-11 | 2022-02-24 | 3.2 | 3.55 | — | 3.5 | 0.005 | 0.58 | 0.0 | 0.04 | 14.17 | 0.00 | 2.200 | 7.80 | 0.00 | 4.0 | 96.0 | 0.0 | -0.29 | 0.68 | 0.82 | 3.06 | 3.5 | 0.002 | 0.50 | 0.0 | 0.04 | 15.48 | 0.00 | 2.185 | 7.86 | 1.17 | 3.3 | 96.7 | 0.0 | 0.81 | 0.30 | 0.69 | 0.84 | 2.28 | 8739 | 1122 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7oRL | 13041 | 2024-03-17 | 2021-06-06 | 3.6 | 3.46 | — | 3.3 | 0.007 | 0.92 | 2.0 | 0.06 | 15.41 | 0.00 | 2.134 | 6.93 | 0.94 | 4.5 | 95.4 | 0.0 | 0.93 | 0.85 | 0.84 | 2.60 | 3.3 | 0.002 | 0.50 | 0.0 | 0.04 | 16.32 | 0.00 | 2.035 | 8.25 | 0.89 | 4.0 | 96.0 | 0.0 | 0.86 | 0.41 | 0.85 | 0.85 | 2.07 | 18852 | 2183 | 6 | 46 | 4 | 0 | 0 | logfile |
✔ | 6o84 | 0650 | 2024-03-11 | 2019-03-08 | 3.92 | 4.04 | — | 4.0 | 0.005 | 0.84 | 0.0 | 0.05 | 14.01 | 0.00 | 2.350 | 2.97 | 0.64 | 4.9 | 95.1 | 0.0 | -5.68 | 0.60 | 0.82 | 2.21 | 4.0 | 0.002 | 0.67 | 0.0 | 0.03 | 15.99 | 0.00 | 2.163 | 8.82 | 2.56 | 5.9 | 94.1 | 0.0 | 1.76 | 1.26 | 0.60 | 0.81 | 2.24 | 6224 | 712 | 2 | 0 | 118 | 0 | 0 | logfile |
✔ | 7NG9 | 12310 | 2024-03-17 | 2021-02-08 | 3.3 | 3.48 | 3.33 | 3.5 | 0.007 | 0.48 | 0.0 | 0.04 | 14.72 | 0.00 | 2.250 | 4.23 | 0.85 | 3.6 | 96.4 | 0.0 | -0.87 | 0.62 | 0.80 | 4.09 | 3.5 | 0.002 | 0.46 | 0.0 | 0.03 | 16.08 | 0.00 | 2.128 | 6.82 | 1.22 | 2.2 | 97.8 | 0.0 | 2.42 | 2.58 | 0.68 | 0.85 | 3.37 | 19368 | 1263 | 3 | 0 | 0 | 0 | 9615 | logfile |
✔ | 7F92 | 31495 | 2024-03-18 | 2021-07-03 | 3.1 | 3.23 | 3.05 | 3.2 | 0.008 | 1.29 | 0.0 | 0.05 | 16.75 | 0.01 | 2.271 | 0.63 | 2.29 | 3.0 | 97.0 | 0.0 | -6.40 | 0.75 | 0.90 | 3.09 | 3.2 | 0.002 | 0.53 | 0.0 | 0.03 | 15.33 | 0.00 | 2.288 | 1.12 | 1.81 | 1.2 | 98.8 | 0.0 | 1.39 | 0.30 | 0.72 | 0.90 | 2.63 | 21240 | 2352 | 36 | 0 | 132 | 264 | 0 | logfile |
✔ | 7SNG | 25225 | 2024-03-16 | 2021-10-28 | 2.8 | 3.04 | — | 3.0 | 0.004 | 0.63 | 2.0 | 0.04 | 14.54 | 0.01 | 2.201 | 10.64 | 0.25 | 3.3 | 96.5 | 0.2 | -0.68 | 0.74 | 0.85 | 4.43 | 3.0 | 0.002 | 0.55 | 0.0 | 0.04 | 16.96 | 0.00 | 2.184 | 9.97 | 1.04 | 3.2 | 96.8 | 0.1 | 0.12 | 0.36 | 0.76 | 0.88 | 3.57 | 15204 | 1868 | 8 | 0 | 0 | 104 | 0 | logfile |
✔ | 8F7W | 28911 | 2024-03-14 | 2022-11-20 | 3.19 | 3.44 | 3.14 | 3.4 | 0.004 | 0.80 | 0.0 | 0.06 | 8.29 | 0.01 | 2.282 | 3.96 | 0.10 | 1.9 | 98.1 | 0.0 | -1.80 | 0.58 | 0.75 | 1.92 | 3.4 | 0.002 | 0.55 | 0.0 | 0.04 | 13.61 | 0.00 | 2.190 | 8.24 | 2.23 | 2.1 | 97.9 | 0.0 | 0.60 | 1.23 | 0.60 | 0.81 | 2.30 | 9087 | 1145 | 7 | 0 | 5 | 0 | 0 | logfile |
✔ | 8A01 | 15044 | 2024-03-10 | 2022-05-26 | 3.2 | 3.25 | 3.20 | 3.2 | 0.002 | 0.44 | 0.0 | 0.05 | 14.81 | 0.00 | 2.289 | 4.13 | 0.00 | 2.0 | 98.0 | 0.0 | 0.02 | 0.48 | 0.86 | 2.87 | 3.2 | 0.002 | 0.47 | 0.0 | 0.05 | 17.00 | 0.00 | 2.265 | 4.93 | 2.22 | 2.5 | 97.5 | 0.0 | -0.45 | 0.25 | 0.47 | 0.87 | 2.60 | 5511 | 717 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6iFK | 9653 | 2024-03-18 | 2018-09-20 | 3.2 | 3.32 | — | 3.3 | 0.009 | 1.20 | 1.0 | 0.06 | 14.75 | 0.01 | 2.046 | 6.33 | 1.01 | 10.7 | 89.0 | 0.3 | -4.87 | 0.74 | 0.82 | 3.58 | 3.3 | 0.002 | 0.65 | 0.0 | 0.04 | 17.43 | 0.00 | 1.974 | 12.03 | 2.33 | 9.2 | 90.8 | 0.0 | -1.90 | 0.70 | 0.75 | 0.84 | 2.59 | 19448 | 2256 | 11 | 67 | 5 | 0 | 0 | logfile |
✔ | 7VQ5 | 32086 | 2024-03-11 | 2021-10-19 | 3.1 | 3.31 | — | 3.3 | 0.009 | 0.77 | 0.0 | 0.05 | 14.85 | 0.00 | 2.110 | 7.38 | 0.14 | 7.4 | 92.6 | 0.0 | -3.56 | 0.66 | 0.84 | 2.48 | 3.4 | 0.002 | 0.52 | 0.0 | 0.04 | 16.01 | 0.00 | 2.190 | 8.41 | 1.72 | 3.7 | 96.3 | 0.0 | 2.32 | 1.11 | 0.62 | 0.82 | 1.94 | 6315 | 800 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 8A05 | 15048 | 2024-03-10 | 2022-05-26 | 3.4 | 3.47 | 3.11 | 3.5 | 0.002 | 0.43 | 0.0 | 0.05 | 12.67 | 0.00 | 2.328 | 2.02 | 0.00 | 2.2 | 97.8 | 0.0 | 0.42 | 0.37 | 0.84 | 2.71 | 3.5 | 0.002 | 0.46 | 0.0 | 0.05 | 14.84 | 0.00 | 2.255 | 2.02 | 2.41 | 2.2 | 97.8 | 0.0 | 0.36 | 0.20 | 0.36 | 0.85 | 2.71 | 764 | 91 | 2 | 0 | 5 | 0 | 0 | logfile |
✔ | 6NZU | 0560 | 2024-03-18 | 2019-02-14 | 3.2 | 3.33 | 3.22 | 3.3 | 0.014 | 0.88 | 0.0 | 0.06 | 14.46 | 0.01 | 2.057 | 2.18 | 0.00 | 7.3 | 92.7 | 0.0 | -5.92 | 0.71 | 0.84 | 3.98 | 3.3 | 0.002 | 0.60 | 0.0 | 0.04 | 15.86 | 0.00 | 2.208 | 6.82 | 0.95 | 4.5 | 95.5 | 0.0 | -1.15 | 0.55 | 0.70 | 0.84 | 3.07 | 12570 | 1588 | 16 | 0 | 6 | 0 | 0 | logfile |