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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6R8B | 4754 | 2022-12-15 | 2019-04-01 | 3.1 | 3.54 | — | 3.5 | 0.012 | 1.34 | 4.0 | 0.07 | 14.76 | 0.01 | 2.211 | 7.92 | 3.12 | 4.0 | 95.7 | 0.2 | -3.32 | 0.45 | 0.56 | 3.49 | 3.5 | 0.002 | 0.55 | 0.0 | 0.04 | 15.89 | 0.00 | 2.124 | 7.09 | 0.57 | 4.5 | 95.5 | 0.0 | -0.32 | 1.22 | 0.65 | 0.79 | 3.35 | 26052 | 1688 | 8 | 0 | 4 | 0 | 12788 | logfile |
✔ | 6Si8 | 10208 | 2022-12-15 | 2019-08-09 | 3.4 | 3.84 | — | 3.8 | 0.010 | 1.11 | 0.0 | 0.07 | 14.59 | 0.01 | 2.250 | 4.09 | 2.45 | 8.3 | 91.3 | 0.4 | -3.81 | 0.70 | 0.76 | 3.61 | 3.8 | 0.002 | 0.62 | 0.0 | 0.04 | 15.10 | 0.00 | 1.980 | 6.64 | 0.42 | 3.5 | 96.5 | 0.1 | -0.90 | 0.84 | 0.73 | 0.81 | 3.40 | 26542 | 1700 | 8 | 0 | 4 | 0 | 13086 | logfile |
✔ | 6i53 | 4411 | 2022-12-13 | 2018-11-12 | 3.2 | 3.37 | 3.20 | 3.3 | 0.006 | 0.88 | 0.0 | 0.05 | 9.18 | 0.01 | 2.264 | 4.12 | 0.00 | 3.7 | 96.3 | 0.0 | -4.72 | 0.52 | 0.70 | 4.33 | 3.3 | 0.002 | 0.55 | 0.0 | 0.04 | 14.05 | 0.00 | 2.159 | 6.64 | 0.12 | 2.9 | 97.1 | 0.0 | -0.16 | 0.62 | 0.72 | 0.86 | 3.82 | 15362 | 1821 | 16 | 0 | 34 | 0 | 0 | logfile |
✔ | 6H61 | 0143 | 2022-12-12 | 2018-07-25 | 4.02 | 4.20 | 3.87 | 4.0 | 0.007 | 0.84 | 0.0 | 0.05 | 9.67 | 0.00 | 2.107 | 14.83 | 0.18 | 9.5 | 90.5 | 0.0 | -2.98 | 0.62 | 0.78 | — | 4.0 | 0.002 | 0.57 | 0.0 | 0.04 | 12.00 | 0.00 | 2.087 | 22.68 | 0.00 | 6.1 | 93.9 | 0.0 | 0.63 | 1.83 | 0.63 | 0.77 | — | 9912 | 660 | 4 | 30 | 1 | 0 | 4057 | logfile |
✔ | 5WC0 | 8794 | 2022-12-12 | 2017-06-29 | 4.4 | 4.61 | — | 4.4 | 0.006 | 1.06 | 0.0 | 0.05 | 8.99 | 0.01 | 2.043 | 5.46 | 0.11 | 7.9 | 91.9 | 0.2 | -4.78 | 0.87 | 0.79 | — | 4.4 | 0.002 | 0.61 | 0.0 | 0.04 | 10.64 | 0.00 | 2.127 | 11.58 | 0.00 | 5.0 | 95.0 | 0.0 | -0.06 | 3.07 | 0.87 | 0.81 | — | 11460 | 1660 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 5TCQ | 8399 | 2022-12-20 | 2016-09-15 | 3.6 | 3.82 | — | 3.7 | 0.013 | 1.54 | 0.0 | 0.06 | 8.28 | 0.01 | 2.447 | 2.37 | 0.00 | 3.3 | 94.0 | 2.7 | -0.03 | 0.80 | 0.79 | 2.33 | 3.7 | 0.002 | 0.62 | 0.0 | 0.04 | 11.95 | 0.00 | 2.185 | 6.63 | 0.23 | 3.0 | 97.0 | 0.0 | 1.09 | 0.73 | 0.83 | 0.86 | 2.25 | 39180 | 5040 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RVR | 10010 | 2022-12-20 | 2019-05-31 | 3.46 | 3.63 | — | 3.5 | 0.008 | 0.75 | 0.0 | 0.05 | 14.89 | 0.00 | 2.082 | 8.59 | 0.57 | 10.3 | 89.7 | 0.0 | -4.34 | 0.81 | 0.85 | 2.30 | 3.5 | 0.002 | 0.58 | 0.0 | 0.04 | 15.99 | 0.00 | 2.209 | 6.68 | 0.31 | 7.6 | 92.4 | 0.0 | -0.52 | 0.45 | 0.79 | 0.84 | 1.87 | 37716 | 4680 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QPi | 4614 | 2022-12-11 | 2019-02-14 | 3.3 | 3.37 | 2.73 | 3.4 | 0.005 | 0.70 | 0.0 | 0.04 | 6.59 | 0.01 | 2.432 | 2.09 | 0.00 | 1.4 | 98.6 | 0.0 | -3.02 | 0.39 | 0.62 | — | 3.3 | 0.002 | 0.44 | 0.0 | 0.04 | 4.28 | 0.00 | 2.462 | 1.49 | 0.00 | 2.8 | 97.2 | 0.0 | 2.25 | 1.20 | 0.40 | 0.62 | — | 2288 | 462 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6K9L | 9950 | 2022-12-16 | 2019-06-16 | 4.27 | 4.50 | — | 4.2 | 0.001 | 0.49 | 0.0 | 0.04 | 9.31 | 0.00 | 2.240 | 4.79 | 4.95 | 4.6 | 95.4 | 0.0 | -3.11 | 0.84 | 0.71 | — | 4.2 | 0.002 | 0.67 | 0.0 | 0.04 | 9.90 | 0.00 | 2.097 | 10.64 | 0.00 | 6.5 | 93.5 | 0.0 | 0.79 | 1.78 | 0.85 | 0.75 | — | 30601 | 5103 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CG0 | 7470 | 2022-12-14 | 2018-02-19 | 3.17 | 3.69 | — | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 20.01 | 0.00 | 2.205 | 15.37 | 4.08 | 2.5 | 97.4 | 0.1 | -2.47 | 0.91 | 0.85 | 3.15 | 3.3 | 0.002 | 0.54 | 0.0 | 0.04 | 20.30 | 0.00 | 2.133 | 8.07 | 0.12 | 2.0 | 98.0 | 0.0 | 0.50 | 0.53 | 0.92 | 0.88 | 2.66 | 20080 | 1989 | 13 | 212 | 4 | 0 | 0 | logfile |
✔ | 6H66 | 0145 | 2022-12-12 | 2018-07-26 | 4.16 | 4.23 | 3.99 | 4.2 | 0.008 | 0.88 | 0.0 | 0.05 | 9.41 | 0.01 | 2.070 | 15.50 | 0.17 | 10.4 | 89.4 | 0.2 | -3.09 | 0.61 | 0.76 | — | 4.2 | 0.002 | 0.63 | 0.0 | 0.04 | 11.99 | 0.00 | 2.063 | 21.64 | 0.00 | 7.8 | 92.2 | 0.0 | 0.56 | 1.86 | 0.62 | 0.77 | — | 10017 | 667 | 4 | 30 | 1 | 0 | 4120 | logfile |
✔ | 6o0Z | 0585 | 2022-12-12 | 2019-02-17 | 3.3 | 3.94 | — | 3.6 | 0.006 | 0.72 | 0.0 | 0.04 | 16.28 | 0.00 | 2.302 | 2.58 | 0.27 | 6.3 | 93.7 | 0.0 | -4.11 | 0.86 | 0.88 | 3.46 | 3.6 | 0.002 | 0.52 | 0.0 | 0.03 | 16.62 | 0.00 | 2.157 | 4.96 | 0.14 | 5.7 | 94.3 | 0.0 | 0.16 | 0.32 | 0.85 | 0.88 | 3.28 | 11912 | 1288 | 4 | 135 | 0 | 0 | 0 | logfile |
✔ | 6PKW | 20368 | 2022-12-15 | 2019-06-30 | 4.5 | 4.77 | — | 4.4 | 0.007 | 0.94 | 0.0 | 0.05 | 9.19 | 0.01 | 2.239 | 4.19 | 0.00 | 5.8 | 94.2 | 0.0 | -3.48 | 0.66 | 0.78 | — | 4.4 | 0.002 | 0.56 | 0.0 | 0.04 | 9.69 | 0.00 | 2.250 | 6.67 | 0.00 | 4.4 | 95.6 | 0.0 | 2.10 | 1.62 | 0.67 | 0.79 | — | 26262 | 4056 | 4 | 0 | 88 | 0 | 0 | logfile |
✔ | 6oT2 | 20192 | 2022-12-16 | 2019-05-02 | 4.1 | 4.25 | 4.02 | 4.1 | 0.009 | 0.87 | 0.0 | 0.05 | 8.41 | 0.01 | 2.066 | 6.19 | 0.00 | 7.3 | 92.7 | 0.0 | -2.26 | 0.71 | 0.76 | — | 4.1 | 0.002 | 0.52 | 0.0 | 0.03 | 10.42 | 0.00 | 2.135 | 7.27 | 0.00 | 5.1 | 94.9 | 0.0 | 1.85 | 1.72 | 0.71 | 0.76 | — | 32311 | 2444 | 4 | 0 | 56 | 0 | 14975 | logfile |
✔ | 6LNC | 0930 | 2022-12-16 | 2019-12-28 | 3.21 | 3.30 | — | 3.3 | 0.009 | 1.17 | 0.0 | 0.07 | 13.12 | 0.01 | 1.550 | 5.66 | 0.20 | 10.3 | 89.7 | 0.0 | -4.69 | 0.73 | 0.80 | 3.39 | 3.3 | 0.002 | 0.60 | 0.0 | 0.04 | 14.32 | 0.00 | 2.206 | 8.28 | 0.16 | 7.1 | 92.9 | 0.0 | -1.78 | 0.51 | 0.71 | 0.76 | 2.52 | 28937 | 3447 | 11 | 60 | 0 | 0 | 0 | logfile |
✔ | 6CJU | 7484 | 2022-12-13 | 2018-02-26 | 3.35 | 3.50 | — | 3.4 | 0.011 | 1.50 | 0.0 | 0.07 | 15.93 | 0.01 | 2.277 | 6.56 | 1.49 | 7.3 | 92.7 | 0.0 | -4.12 | 0.69 | 0.83 | 2.94 | 3.4 | 0.002 | 0.68 | 0.0 | 0.04 | 16.72 | 0.00 | 2.194 | 7.79 | 0.00 | 5.6 | 94.4 | 0.0 | 0.77 | 0.63 | 0.70 | 0.84 | 2.29 | 13076 | 1560 | 8 | 0 | 36 | 0 | 0 | logfile |
✔ | 6oiS | 20080 | 2022-12-12 | 2019-04-09 | 3.6 | 3.71 | — | 3.6 | 0.009 | 1.05 | 0.0 | 0.06 | 10.80 | 0.01 | 2.315 | 5.76 | 0.68 | 4.2 | 95.8 | 0.0 | -2.46 | 0.78 | 0.81 | 3.12 | 3.6 | 0.002 | 0.62 | 0.0 | 0.04 | 14.56 | 0.00 | 2.108 | 8.41 | 0.25 | 2.6 | 97.4 | 0.0 | 1.55 | 2.26 | 0.79 | 0.83 | 2.61 | 10732 | 1365 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oGZ | 20060 | 2022-12-15 | 2019-04-03 | 3.6 | 3.85 | — | 3.8 | 0.008 | 0.90 | 0.0 | 0.06 | 15.78 | 0.01 | 2.244 | 5.41 | 0.17 | 4.2 | 95.8 | 0.0 | -5.51 | 0.47 | 0.86 | 2.42 | 3.8 | 0.002 | 0.58 | 0.0 | 0.04 | 17.31 | 0.00 | 2.010 | 8.88 | 0.50 | 2.8 | 97.2 | 0.0 | -1.76 | 1.43 | 0.45 | 0.85 | 1.67 | 74962 | 9081 | 14 | 35 | 2 | 0 | 0 | logfile |
✔ | 6G9o | 4367 | 2022-12-19 | 2018-04-11 | 4.25 | 4.47 | — | 4.2 | 0.007 | 0.84 | 0.0 | 0.05 | 8.43 | 0.01 | 2.233 | 1.42 | 0.00 | 4.0 | 96.0 | 0.0 | -2.09 | 0.74 | 0.81 | — | 4.2 | 0.002 | 0.58 | 0.0 | 0.04 | 10.97 | 0.00 | 2.219 | 9.47 | 0.00 | 3.7 | 96.3 | 0.0 | -0.15 | 1.31 | 0.74 | 0.83 | — | 35532 | 4308 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oR5 | 9032 | 2022-12-12 | 2019-04-29 | 4.0 | 4.23 | — | 3.9 | 0.008 | 1.12 | 0.0 | 0.05 | 10.85 | 0.00 | 2.245 | 4.84 | 0.00 | 17.3 | 82.4 | 0.3 | -5.53 | 0.76 | 0.79 | — | 3.9 | 0.002 | 0.56 | 0.0 | 0.04 | 7.06 | 0.00 | 2.221 | 3.09 | 0.00 | 12.5 | 87.5 | 0.0 | -0.20 | 1.35 | 0.78 | 0.79 | — | 10364 | 2058 | 1 | 0 | 5 | 0 | 0 | logfile |