Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6X0U	21984	2023-08-09	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.74	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.002	0.69	0.0	0.04	17.79	0.00	2.197	7.98	0.29	3.2	96.8	0.0	1.27	0.82	0.27	0.79	2.52	3091	398	4	0	0	0	0	logfile
✔	7V3V	31685	2023-08-16	2021-08-11	2.9	2.82	—	2.8	0.004	0.82	2.0	0.05	13.24	0.01	2.042	6.26	0.07	2.6	97.3	0.0	-0.55	0.62	0.70	2.44	2.8	0.002	0.56	0.0	0.04	17.23	0.00	1.919	8.98	2.15	2.3	97.7	0.0	0.77	1.31	0.71	0.79	2.30	68356	8587	28	0	36	0	0	logfile
✔	7oCA	12802	2023-08-20	2021-04-26	3.4	3.03	—	3.2	0.009	0.96	0.0	0.04	14.22	0.00	2.080	4.67	0.15	3.5	96.5	0.0	0.20	0.72	0.80	3.80	3.1	0.002	0.50	0.0	0.04	14.80	0.00	2.242	4.78	0.27	1.9	98.1	0.0	1.50	0.44	0.75	0.85	3.24	29294	3802	22	0	72	0	0	logfile
✔	8DVS	27744	2023-08-09	2022-07-29	3.0	3.15	2.97	3.2	0.002	0.47	0.0	0.04	13.64	0.00	2.271	7.41	1.32	6.8	93.2	0.0	-1.94	0.68	0.80	2.76	3.1	0.002	0.54	0.0	0.04	15.88	0.00	2.201	6.40	2.63	7.4	92.6	0.0	0.64	0.45	0.71	0.85	3.21	6058	682	3	26	3	0	0	logfile
✔	7CFM	30344	2023-08-10	2020-06-27	3.0	3.21	—	3.2	0.006	0.99	0.0	0.06	11.26	0.01	1.988	8.31	0.24	3.0	97.0	0.0	-2.23	0.61	0.78	3.69	3.2	0.002	0.59	0.0	0.04	15.49	0.00	2.185	6.82	1.79	2.1	97.9	0.0	1.25	0.56	0.61	0.79	2.60	8081	1027	5	0	4	1	0	logfile
✔	7KSM	23020	2023-08-18	2020-11-23	3.2	2.90	3.21	3.1	0.007	0.79	0.0	0.05	14.48	0.01	1.934	7.88	0.08	4.4	95.6	0.0	-2.42	0.76	0.86	3.00	3.1	0.002	0.55	0.0	0.04	16.01	0.00	2.005	7.70	0.30	3.7	96.3	0.0	0.21	1.22	0.77	0.87	2.33	24547	3137	13	0	22	0	0	logfile
✔	6VYL	21463	2023-08-13	2020-02-27	3.4	3.43	—	3.4	0.008	0.85	0.0	0.05	14.42	0.01	2.293	4.68	0.48	5.1	94.9	0.0	-4.60	0.72	0.84	2.99	3.4	0.002	0.52	0.0	0.04	15.80	0.00	2.156	8.64	0.21	3.4	96.6	0.0	-0.15	0.53	0.67	0.83	2.63	13671	1792	7	0	0	0	0	logfile
✔	7V2E	31643	2023-08-15	2021-08-08	2.8	2.87	—	2.8	0.008	0.90	8.0	0.05	15.67	0.01	1.695	9.97	0.40	3.6	96.1	0.2	0.73	0.80	0.87	3.71	2.8	0.002	0.55	0.0	0.04	16.74	0.00	2.134	7.19	1.34	3.5	96.5	0.1	1.15	0.35	0.79	0.89	3.28	68244	8269	68	0	45	0	0	logfile
✔	8iWE	35765	2023-08-09	2023-03-29	3.4	3.95	3.24	3.8	0.004	0.93	1.0	0.07	16.00	0.00	2.321	10.10	2.84	5.9	94.1	0.0	-0.50	0.58	0.79	2.37	3.8	0.002	0.59	0.0	0.04	15.63	0.00	2.185	4.36	1.42	5.5	94.5	0.0	0.49	1.00	0.60	0.84	1.73	2236	296	1	0	1	0	0	logfile
✔	6QTZ	4636	2023-08-18	2019-02-26	3.5	3.65	—	3.6	0.006	0.81	8.0	0.04	15.79	0.01	1.165	4.32	0.66	7.3	92.5	0.2	-4.44	0.83	0.84	2.55	3.6	0.002	0.53	0.0	0.03	15.96	0.00	2.060	9.26	0.45	5.4	94.6	0.1	-1.24	0.50	0.84	0.85	1.85	130259	7050	54	3423	217	0	0	logfile
✔	6oFJ	20047	2023-08-11	2019-03-30	4.5	5.60	3.27	7.8	0.007	0.96	0.0	0.05	15.74	0.01	2.135	3.69	0.00	7.1	92.9	0.0	-4.36	0.48	0.33	—	7.8	0.002	0.58	0.0	0.04	14.03	0.00	2.002	10.00	0.00	8.7	91.3	0.0	-1.93	1.22	0.56	0.54	—	10310	650	2	0	0	0	5142	logfile
✔	7VoJ	32050	2023-08-09	2021-10-14	3.0	3.21	—	3.3	0.008	1.01	0.0	0.06	13.59	0.01	2.061	7.62	1.73	3.3	96.5	0.3	-2.46	0.65	0.83	2.35	3.3	0.002	0.56	0.0	0.03	16.62	0.00	1.924	4.63	2.02	2.9	97.1	0.0	3.11	2.16	0.60	0.82	1.75	6318	800	4	0	6	0	0	logfile
✔	6ENF	3898	2023-08-24	2017-10-04	3.2	3.22	—	3.2	0.003	0.75	1.0	0.04	13.88	0.01	1.244	4.82	0.53	8.0	91.7	0.3	-4.83	0.75	0.78	2.02	3.2	0.002	0.59	0.0	0.03	15.29	0.00	2.074	10.66	0.51	7.7	92.2	0.2	-1.82	1.26	0.80	0.84	1.84	140797	5531	53	4546	0	0	0	logfile
✔	8D67	27219	2023-08-12	2022-06-06	3.3	3.45	2.92	3.5	0.009	0.97	0.0	0.07	13.90	0.01	2.261	6.52	0.36	7.5	92.5	0.0	-1.52	0.68	0.82	3.08	3.5	0.002	0.49	0.0	0.04	15.33	0.00	2.247	4.52	0.22	4.5	95.5	0.0	-0.19	1.17	0.69	0.83	2.67	12570	1540	10	0	0	0	0	logfile
✔	7W4C	32300	2023-08-15	2021-11-27	2.7	2.83	—	2.8	0.007	0.82	0.0	0.04	18.50	0.01	2.188	7.03	1.33	3.4	96.5	0.1	0.86	0.80	0.89	3.32	2.8	0.002	0.53	0.0	0.04	17.52	0.00	2.146	6.93	1.79	3.5	96.4	0.0	1.26	0.27	0.78	0.88	3.06	68216	8270	69	0	47	0	0	logfile
✔	7W0Y	32249	2023-08-15	2021-11-18	3.4	3.42	—	3.4	0.008	0.81	0.0	0.04	17.98	0.01	2.148	11.79	0.22	3.4	96.5	0.1	1.17	0.78	0.85	2.73	3.4	0.002	0.54	0.0	0.04	17.04	0.00	2.142	8.54	0.24	3.3	96.6	0.0	1.18	0.35	0.78	0.86	2.57	68093	8269	68	0	44	0	0	logfile
✔	7X2D	32965	2023-08-12	2022-02-25	3.3	3.43	—	3.5	0.005	0.84	1.0	0.05	14.43	0.01	1.860	12.03	0.57	3.0	97.0	0.0	-0.46	0.64	0.79	2.37	3.5	0.002	0.57	0.0	0.04	16.00	0.00	2.106	9.39	0.45	2.0	98.0	0.0	1.17	1.18	0.63	0.82	2.16	8203	1032	6	0	2	0	0	logfile
✔	7XTQ	33452	2023-08-10	2022-05-17	3.2	2.29	3.30	2.1	0.004	0.77	0.0	0.05	12.74	0.01	2.192	5.84	0.00	3.1	96.9	0.0	-0.37	0.73	0.74	2.67	2.1	0.002	0.63	0.0	0.04	15.64	0.00	2.163	6.72	0.12	2.6	97.4	0.0	0.76	0.38	0.71	0.74	1.86	8010	1027	5	0	1	0	0	logfile
✔	6oFF	20044	2023-08-12	2019-03-29	3.2	3.32	—	3.3	0.009	0.83	0.0	0.04	10.88	0.01	2.147	4.73	0.00	3.9	96.1	0.0	-5.21	0.59	0.85	4.52	3.3	0.002	0.53	0.0	0.03	15.58	0.00	2.230	6.89	0.25	3.8	96.2	0.0	4.04	1.22	0.62	0.88	3.84	11016	1404	18	0	0	0	0	logfile
✔	6SMQ	10245	2023-08-25	2019-08-22	3.3	3.30	—	3.3	0.011	1.04	0.0	0.06	14.96	0.01	2.261	3.35	0.43	7.4	92.4	0.2	-3.34	0.78	0.88	4.04	3.3	0.002	0.55	0.0	0.04	15.68	0.00	2.204	4.86	0.04	4.9	95.1	0.0	-0.67	0.42	0.77	0.88	3.23	22136	2791	9	0	9	0	0	logfile

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