Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NT5	0502	2022-07-03	2019-01-28	4.1	4.28	—	4.1	0.006	0.93	0.0	0.05	10.32	0.01	2.300	3.81	0.41	4.7	95.3	0.0	-2.40	0.73	0.82	—	4.1	0.002	0.57	0.0	0.04	12.52	0.00	2.325	7.08	0.00	2.0	98.0	0.0	1.95	1.16	0.73	0.81	—	4586	584	2	0	0	0	0	logfile
✔	5TCQ	8399	2022-07-07	2016-09-15	3.6	3.82	—	3.7	0.013	1.54	0.0	0.06	8.28	0.01	2.447	2.37	0.00	3.3	94.0	2.7	-0.03	0.80	0.79	2.33	3.7	0.002	0.62	0.0	0.04	11.95	0.00	2.185	6.63	0.23	3.0	97.0	0.0	1.09	0.73	0.83	0.86	2.25	39180	5040	15	0	0	0	0	logfile
✔	6RVR	10010	2022-07-07	2019-05-31	3.46	3.63	—	3.5	0.008	0.75	0.0	0.05	14.89	0.00	2.082	8.59	0.57	10.3	89.7	0.0	-4.34	0.81	0.85	2.30	3.5	0.002	0.58	0.0	0.04	15.89	0.00	2.183	6.70	0.19	6.3	93.7	0.0	-0.67	0.46	0.79	0.84	1.75	37716	4680	12	0	0	0	0	logfile
✔	6QPi	4614	2022-07-02	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.002	0.44	0.0	0.04	4.28	0.00	2.462	1.49	0.00	2.8	97.2	0.0	2.25	1.20	0.41	0.62	—	2288	462	2	0	0	0	0	logfile
✔	6PWN	20508	2022-07-04	2019-07-23	3.1	3.65	2.95	3.4	0.008	0.86	0.0	0.04	14.34	0.00	2.276	8.66	0.44	3.5	96.5	0.0	-2.16	0.80	0.84	2.55	3.4	0.002	0.58	0.0	0.04	15.27	0.00	2.270	6.93	0.13	3.2	96.8	0.0	1.47	1.21	0.81	0.85	1.95	15379	1960	14	0	14	0	0	logfile
✔	6C96	7434	2022-07-03	2018-01-25	3.4	3.54	—	3.5	0.009	1.04	0.0	0.06	10.46	0.01	2.277	3.50	0.30	5.1	94.9	0.0	-4.38	0.58	0.82	3.11	3.5	0.002	0.66	0.0	0.04	15.49	0.00	2.162	7.61	0.46	4.3	95.7	0.0	1.10	0.76	0.59	0.83	1.86	12090	1446	4	0	8	0	0	logfile
✔	6PKV	20367	2022-07-06	2019-06-30	4.3	4.49	—	4.3	0.005	0.86	0.0	0.05	8.98	0.01	2.311	3.59	0.00	4.7	95.3	0.0	-3.45	0.67	0.78	—	4.3	0.002	0.56	0.0	0.04	9.94	0.00	2.255	6.39	0.00	4.1	95.9	0.0	1.40	1.92	0.67	0.77	—	28284	4260	4	0	88	0	0	logfile
✔	6oT2	20192	2022-07-06	2019-05-02	4.1	4.25	4.02	4.1	0.009	0.87	0.0	0.05	8.41	0.01	2.066	6.19	0.00	7.3	92.7	0.0	-2.26	0.71	0.76	—	4.1	0.002	0.52	0.0	0.03	10.42	0.00	2.135	7.27	0.00	5.1	94.9	0.0	1.85	1.72	0.71	0.76	—	32311	2444	4	0	56	0	14975	logfile
✔	6E1o	8959	2022-07-03	2018-07-10	3.59	3.70	—	3.7	0.008	1.21	0.0	0.06	11.66	0.01	2.219	4.62	0.78	6.9	93.1	0.0	-5.85	0.66	0.83	2.30	3.7	0.002	0.65	0.0	0.04	14.83	0.00	2.143	7.11	0.29	4.8	95.2	0.0	-0.49	0.84	0.67	0.83	0.91	9784	1182	4	0	18	0	0	logfile
✔	6NR4	0489	2022-07-05	2019-01-22	4.3	4.39	4.24	4.3	0.006	0.93	0.0	0.05	9.96	0.01	2.319	3.34	0.39	4.7	95.3	0.0	-3.24	0.60	0.77	—	4.3	0.002	0.58	0.0	0.04	12.17	0.00	2.242	7.66	0.00	3.3	96.7	0.0	2.35	0.80	0.60	0.77	—	23264	3036	4	0	180	0	0	logfile
✔	6RVS	10011	2022-07-07	2019-05-31	3.59	3.68	—	3.6	0.007	1.04	12.0	0.06	14.97	0.01	2.307	7.47	0.56	8.4	91.1	0.5	-4.57	0.77	0.82	2.18	3.6	0.002	0.66	0.0	0.04	16.28	0.00	2.301	7.57	0.23	7.5	92.5	0.0	-0.52	0.62	0.77	0.82	1.50	38388	4764	12	0	0	0	0	logfile
✔	6V8o	21107	2022-07-05	2019-12-11	3.07	3.27	3.04	3.3	0.004	0.55	0.0	0.04	11.21	0.00	2.149	6.88	2.31	6.9	93.0	0.1	-1.57	0.67	0.77	1.92	3.3	0.002	0.57	0.0	0.04	14.94	0.00	2.089	7.74	0.25	5.0	95.0	0.0	1.52	2.89	0.70	0.82	1.71	25103	3012	23	0	145	0	0	logfile
✔	6oR5	9032	2022-07-03	2019-04-29	4.0	4.23	—	3.9	0.008	1.12	0.0	0.05	10.85	0.00	2.245	4.84	0.00	17.3	82.4	0.3	-5.53	0.76	0.79	—	3.9	0.002	0.56	0.0	0.04	7.06	0.00	2.221	3.09	0.00	12.5	87.5	0.0	-0.20	1.35	0.78	0.79	—	10364	2058	1	0	5	0	0	logfile
✔	6G9o	4367	2022-07-07	2018-04-11	4.25	4.47	—	4.2	0.007	0.84	0.0	0.05	8.43	0.01	2.233	1.42	0.00	4.0	96.0	0.0	-2.09	0.74	0.81	—	4.2	0.002	0.58	0.0	0.04	10.95	0.00	2.215	9.64	0.00	3.2	96.8	0.0	-0.12	1.31	0.75	0.83	—	35532	4308	6	0	0	0	0	logfile
✔	6H66	0145	2022-07-03	2018-07-26	4.16	4.23	3.99	4.2	0.008	0.88	0.0	0.05	9.41	0.01	2.070	15.50	0.17	10.4	89.4	0.2	-3.09	0.61	0.76	—	4.2	0.002	0.63	0.0	0.04	11.99	0.00	2.063	21.64	0.00	7.8	92.2	0.0	0.56	1.86	0.62	0.77	—	10017	667	4	30	1	0	4120	logfile
✔	6PSN	20459	2022-07-06	2019-07-12	4.6	4.92	—	4.6	0.006	0.93	0.0	0.06	9.42	0.01	2.107	7.33	0.65	3.2	96.8	0.0	-1.98	0.81	0.80	—	4.6	0.002	0.59	0.0	0.04	10.28	0.00	2.102	11.30	0.00	3.5	96.5	0.0	-0.20	2.25	0.81	0.77	—	32830	4154	15	0	14	0	0	logfile
✔	6PXM	20521	2022-07-06	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.60	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	2.3	0.002	0.44	0.0	0.03	17.75	0.00	2.211	4.41	0.14	1.8	98.2	0.0	5.26	1.48	0.79	0.90	3.80	32736	4080	24	0	0	0	0	logfile
✔	6CUD	7620	2022-07-04	2018-03-25	3.3	3.61	—	3.5	0.007	1.13	0.0	0.06	12.63	0.02	2.171	6.98	1.47	4.4	95.5	0.1	-3.04	0.71	0.83	1.93	3.5	0.002	0.55	0.0	0.04	13.46	0.00	2.265	3.15	0.16	3.2	96.7	0.1	2.37	1.60	0.72	0.85	1.68	21028	2816	8	0	12	0	0	logfile
✔	7C8D	30305	2022-07-03	2020-05-29	3.0	2.79	—	2.8	0.003	0.53	0.0	0.04	17.37	0.00	1.998	9.11	5.90	3.6	96.4	0.0	-2.80	0.71	0.76	3.07	2.8	0.002	0.65	0.0	0.04	17.82	0.00	2.096	10.00	3.69	4.6	95.4	0.0	0.12	1.10	0.72	0.78	2.32	6359	792	3	0	1	0	0	logfile
✔	6VQi	21351	2022-07-03	2020-02-05	4.3	4.89	—	4.2	0.005	1.14	0.0	0.05	3.90	0.01	2.327	1.95	0.00	1.3	98.2	0.5	2.16	0.56	0.73	—	4.1	0.002	0.54	0.0	0.03	3.92	0.00	2.243	3.65	0.00	5.4	94.5	0.1	3.11	0.74	0.57	0.74	—	5278	1062	8	0	0	0	0	logfile

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