Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XEU	22150	2023-04-21	2020-06-13	3.2	3.84	—	3.7	0.008	0.82	4.0	0.06	15.47	0.01	2.387	2.63	2.83	11.3	88.7	0.0	-2.88	0.76	0.88	3.94	3.7	0.002	0.60	0.0	0.04	15.63	0.00	2.305	3.40	0.09	4.3	95.7	0.0	0.15	0.37	0.77	0.89	3.06	10544	1312	8	0	16	0	0	logfile
✔	7L2T	23140	2023-04-25	2020-12-17	3.08	3.13	3.02	3.2	0.004	0.72	1.0	0.26	12.81	0.00	2.348	0.67	0.60	5.5	94.5	0.0	0.70	0.64	0.84	3.00	3.2	0.002	0.56	0.0	0.04	14.44	0.00	2.237	3.81	0.23	6.8	93.2	0.0	0.88	1.03	0.63	0.86	2.41	20167	2463	16	0	9	4	0	logfile
✔	7LMA	23437	2023-04-24	2021-02-05	3.3	3.45	—	3.4	0.004	0.56	0.0	0.04	16.77	0.00	2.202	6.67	0.91	4.3	95.7	0.0	-2.64	0.73	0.82	2.57	3.4	0.002	0.55	0.0	0.04	17.83	0.00	2.068	7.82	0.24	2.7	97.3	0.0	0.22	0.56	0.76	0.84	1.91	18672	1837	9	170	1	0	0	logfile
✔	6NTS	0510	2023-04-21	2019-01-30	3.63	4.31	2.98	3.6	0.016	0.51	0.0	0.03	13.23	0.00	1.917	2.06	0.00	3.8	96.2	0.0	-2.08	0.89	0.77	0.59	3.6	0.002	0.62	0.0	0.04	15.01	0.00	2.074	8.23	0.00	2.2	97.8	0.0	0.88	2.31	0.92	0.85	1.06	9956	1240	5	0	3	0	0	logfile
✔	8E58	27906	2023-04-24	2022-08-20	3.0	3.15	3.06	3.2	0.007	0.69	0.0	0.12	15.85	0.00	2.199	7.40	0.91	5.4	94.5	0.1	0.19	0.58	0.82	2.81	3.2	0.002	0.64	0.0	0.06	16.35	0.00	2.189	6.69	1.36	5.5	94.5	0.0	0.56	0.32	0.61	0.84	2.60	18449	2247	12	0	28	0	0	logfile
✔	7KU5	23034	2023-04-19	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	3.9	0.002	0.72	0.0	0.04	15.66	0.01	2.252	10.89	0.00	9.3	90.7	0.0	-1.34	1.18	0.24	0.69	2.46	750	88	1	0	4	0	0	logfile
✔	7oo0	13003	2023-04-23	2021-05-26	3.1	3.05	2.96	3.1	0.009	0.86	0.0	0.05	12.75	0.00	2.131	7.27	0.00	3.1	96.9	0.0	-1.80	0.61	0.78	2.85	3.1	0.002	0.49	0.0	0.04	13.55	0.00	2.304	5.53	0.13	1.4	98.6	0.0	1.58	1.53	0.61	0.79	2.28	16016	1834	14	0	56	0	0	logfile
✔	6BCJ	7081	2023-04-29	2017-10-20	3.14	3.22	—	3.2	0.008	0.97	0.0	0.05	9.60	0.01	2.301	2.63	0.38	5.9	94.1	0.0	-4.83	0.68	0.84	3.10	3.2	0.002	0.59	0.0	0.04	14.13	0.00	2.243	7.14	0.03	5.1	94.9	0.0	1.36	0.76	0.71	0.84	2.10	29868	3744	9	0	4	8	0	logfile
✔	6WB2	21585	2023-04-20	2020-03-26	4.5	4.71	—	4.5	0.002	0.44	0.0	0.04	11.33	0.00	2.293	7.78	0.17	3.1	96.9	0.0	-3.59	0.86	0.80	—	4.5	0.002	0.56	0.0	0.04	12.11	0.00	2.206	8.83	0.00	3.3	96.7	0.0	-0.40	0.64	0.86	0.82	—	8407	946	4	75	0	0	0	logfile
✔	6MRW	9214	2023-04-22	2018-10-15	4.3	4.76	—	4.3	0.006	0.98	0.0	0.04	10.35	0.01	2.080	4.61	0.41	2.1	97.9	0.0	-0.19	0.82	0.84	—	4.3	0.002	0.48	0.0	0.03	11.78	0.00	2.084	7.07	0.00	1.9	98.1	0.0	6.00	1.27	0.83	0.86	—	31346	3990	14	0	0	0	0	logfile
✔	8D3U	27164	2023-04-25	2022-06-01	3.7	3.38	3.74	3.6	0.005	1.15	1.0	0.05	17.66	0.00	1.392	12.21	0.63	5.2	94.7	0.1	0.50	0.64	0.81	1.41	3.6	0.002	0.61	0.0	0.04	17.53	0.00	2.162	10.92	0.09	4.8	95.2	0.1	0.44	0.46	0.64	0.82	1.36	10121	1287	4	0	2	0	0	logfile
✔	7YG4	33807	2023-04-20	2022-07-11	3.1	3.38	3.15	3.3	0.003	0.58	0.0	0.04	15.98	0.00	2.147	7.09	0.00	3.3	96.7	0.0	0.41	0.75	0.81	1.84	3.3	0.002	0.57	0.0	0.03	17.05	0.00	2.235	6.89	0.00	3.3	96.7	0.0	2.29	0.36	0.75	0.81	0.84	7510	953	3	0	0	0	0	logfile
✔	8EPL	28529	2023-04-25	2022-10-06	3.1	3.21	3.14	3.2	0.003	0.65	0.0	0.04	16.96	0.00	2.205	7.22	0.27	4.6	95.3	0.1	-0.52	0.54	0.73	2.22	3.2	0.002	0.53	0.0	0.04	17.16	0.00	2.206	7.34	0.36	4.7	95.3	0.0	0.08	1.16	0.57	0.83	2.16	20953	2546	10	0	25	0	0	logfile
✔	7PEo	13355	2023-04-27	2021-08-11	4.37	6.48	—	4.4	0.009	1.63	0.0	0.13	14.80	0.02	2.206	4.00	0.60	2.5	97.5	0.0	-2.52	0.90	0.86	—	4.3	0.002	0.58	0.0	0.03	12.57	0.00	2.099	6.50	0.00	1.9	98.1	0.0	1.94	1.33	0.91	0.88	—	26278	3388	42	0	210	0	0	logfile
✔	5U6o	8511	2023-04-23	2016-12-08	3.5	3.58	—	3.5	0.008	1.44	0.0	0.08	11.34	0.01	2.380	2.59	0.00	4.6	95.4	0.0	1.02	0.54	0.66	2.98	3.5	0.002	0.61	0.0	0.04	15.08	0.00	2.203	9.26	0.37	1.9	98.1	0.0	2.22	0.66	0.67	0.82	1.80	14480	1928	4	0	0	0	0	logfile
✔	8E57	27905	2023-04-24	2022-08-20	2.8	2.97	2.82	3.0	0.005	0.60	0.0	0.12	15.51	0.00	2.214	5.98	0.66	4.2	95.8	0.0	0.54	0.61	0.83	2.94	3.0	0.002	0.62	0.0	0.06	16.02	0.00	2.208	6.53	1.56	4.6	95.4	0.0	0.27	0.29	0.63	0.84	2.71	18449	2247	12	0	28	0	0	logfile
✔	7QER	13938	2023-04-25	2021-12-03	2.2	2.66	2.18	2.3	0.009	0.94	0.0	0.05	14.11	0.00	2.117	3.04	2.94	1.6	98.4	0.0	-0.05	0.84	0.88	3.46	2.3	0.002	0.55	0.0	0.04	14.91	0.00	2.235	2.48	2.20	1.3	98.7	0.0	3.46	1.24	0.84	0.89	3.42	19097	2244	36	0	60	305	0	logfile
✔	7LCi	23274	2023-04-20	2021-01-11	2.9	2.52	2.86	3.0	0.005	0.78	0.0	0.05	13.55	0.00	2.203	10.74	0.00	3.3	96.7	0.0	-0.99	0.50	0.67	2.62	3.0	0.002	0.58	0.0	0.04	16.49	0.00	2.191	10.01	2.27	2.1	97.9	0.0	0.98	1.35	0.52	0.72	1.87	8317	1032	6	0	1	20	0	logfile
✔	7VDC	31913	2023-04-21	2021-09-06	3.28	2.77	3.31	2.7	0.002	0.52	0.0	0.04	14.50	0.01	2.066	9.92	0.09	3.0	97.0	0.0	0.15	0.63	0.73	1.31	2.7	0.002	0.53	0.0	0.04	16.32	0.00	2.093	9.92	0.18	3.6	96.4	0.0	0.81	0.36	0.63	0.76	0.97	10472	1372	4	0	0	0	0	logfile
✔	7T6B	25712	2023-04-21	2021-12-13	3.19	3.45	—	3.5	0.005	0.80	0.0	0.05	14.44	0.01	2.195	6.51	0.21	4.0	96.0	0.0	-3.82	0.62	0.82	3.31	3.5	0.002	0.57	0.0	0.04	15.65	0.00	2.085	7.71	0.21	2.5	97.5	0.0	-0.30	1.00	0.57	0.81	2.41	8755	1119	5	0	1	0	0	logfile

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