Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JPo	22417	2021-08-08	2020-08-09	3.2	2.55	—	3.2	0.007	1.09	0.0	0.06	15.53	0.01	2.073	2.36	0.00	3.0	97.0	0.0	-1.99	0.79	0.81	2.74	3.2	0.002	0.54	0.0	0.04	17.03	0.00	2.021	5.56	0.00	2.1	97.9	0.0	0.72	0.47	0.80	0.82	1.69	16087	1966	9	0	7	0	0	logfile
✔	7KJR	22898	2021-08-07	2020-10-26	2.08	2.52	2.15	2.4	0.007	0.89	0.0	0.05	16.37	0.00	2.254	7.60	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	2.4	0.002	0.49	0.0	0.04	15.85	0.00	2.118	9.22	0.99	2.3	97.7	0.0	1.42	0.42	0.67	0.86	4.21	3840	448	8	0	2	122	0	logfile
✔	6Y5B	10693	2021-08-10	2020-02-25	3.1	4.45	2.96	3.0	0.006	0.87	0.0	0.05	13.31	0.01	2.010	5.15	0.00	1.9	98.1	0.0	-3.11	0.93	0.85	2.13	3.0	0.002	0.53	0.0	0.04	14.24	0.00	2.063	6.65	0.06	1.9	98.1	0.0	0.73	1.15	0.94	0.87	2.36	31429	1887	5	0	0	0	15794	logfile
✔	7KPW	22990	2021-08-07	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.28	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.9	0.002	0.61	0.0	0.04	3.64	0.00	2.242	0.66	0.00	7.8	91.6	0.6	2.26	2.01	0.81	0.80	—	4313	865	1	0	0	0	0	logfile
✔	7B05	11957	2021-08-09	2020-11-18	3.8	3.93	—	3.8	0.009	0.82	0.0	0.04	16.07	0.00	2.267	8.85	0.00	8.1	91.9	0.0	-0.12	0.81	0.85	2.79	3.8	0.002	0.61	0.0	0.04	17.07	0.00	2.233	7.44	0.13	3.9	96.1	0.0	1.61	0.45	0.80	0.84	1.62	21056	2580	8	0	12	0	0	logfile
✔	7DTT	30853	2021-08-08	2021-01-06	3.8	3.66	—	3.3	0.010	0.98	0.0	0.07	14.11	0.01	2.230	5.19	0.00	9.7	90.1	0.1	-4.29	0.72	0.82	2.94	3.3	0.002	0.52	0.0	0.05	14.78	0.00	2.188	5.77	0.00	4.3	95.7	0.0	-0.34	0.47	0.72	0.81	1.93	11204	1558	8	0	22	0	0	logfile
✔	6LVB	0988	2021-08-10	2020-02-02	2.8	2.90	2.77	2.9	0.008	0.90	0.0	0.06	9.15	0.01	1.914	2.94	0.27	4.6	95.4	0.0	-2.88	0.80	0.89	6.02	2.8	0.002	0.54	0.0	0.04	14.53	0.00	1.973	5.40	1.16	3.8	96.2	0.0	-0.13	1.20	0.80	0.90	4.64	28276	3544	16	0	4	4	0	logfile
✔	6M79	30128	2021-08-10	2020-03-18	3.1	3.20	3.11	3.2	0.007	0.72	0.0	0.05	14.54	0.00	2.067	5.52	3.99	3.9	96.1	0.0	-0.35	0.74	0.80	2.93	3.2	0.002	0.53	0.0	0.04	15.51	0.00	2.192	5.52	0.25	1.8	98.2	0.0	1.03	0.53	0.74	0.83	2.77	15324	1842	8	0	8	0	0	logfile
✔	7K4B	22663	2021-08-09	2020-09-15	3.1	3.39	—	3.4	0.024	2.91	0.0	0.33	18.73	0.01	2.287	4.75	0.95	8.9	91.0	0.1	-6.09	0.56	0.82	3.72	3.4	0.002	1.08	0.0	0.04	16.11	0.00	2.241	12.24	0.38	7.0	93.0	0.0	-0.93	0.64	0.64	0.85	1.81	21118	2428	8	0	62	0	0	logfile
✔	6WKW	21811	2021-08-07	2020-04-17	3.6	3.75	—	3.6	0.095	1.94	0.0	0.06	16.38	0.00	1.408	12.62	0.52	12.6	87.3	0.2	-5.89	0.87	0.91	3.41	3.6	0.002	0.71	0.0	0.04	15.57	0.00	2.177	8.67	0.41	6.1	93.9	0.0	-2.28	0.58	0.85	0.89	2.65	10037	1319	8	0	4	0	0	logfile
✔	6T0R	10357	2021-08-08	2019-10-03	2.82	2.90	2.91	2.9	0.005	0.66	0.0	0.05	13.99	0.01	2.279	4.08	4.99	3.5	96.5	0.0	-2.98	0.69	0.85	3.55	2.9	0.002	0.52	0.0	0.04	16.45	0.00	2.088	7.77	2.33	2.9	97.1	0.0	0.87	1.33	0.71	0.86	2.90	14120	1690	7	20	0	31	0	logfile
✔	7L1U	23118	2021-08-07	2020-12-15	3.2	3.71	—	3.7	0.011	1.00	0.0	0.06	13.51	0.01	2.202	2.97	0.78	3.6	96.4	0.0	-3.21	0.67	0.85	3.89	3.7	0.002	0.59	0.0	0.04	15.17	0.00	2.096	6.17	0.00	1.9	98.1	0.0	0.54	0.97	0.68	0.85	2.87	8723	1148	6	0	1	0	0	logfile
✔	7LFW	23307	2021-08-08	2021-01-18	2.9	2.79	—	2.9	0.010	0.65	0.0	0.05	13.33	0.00	2.226	9.92	0.25	2.3	97.7	0.0	-1.18	0.67	0.85	3.62	2.9	0.002	0.53	0.0	0.04	15.60	0.00	2.228	12.37	0.25	2.8	97.2	0.0	1.17	1.33	0.71	0.87	3.46	14846	1800	8	0	6	0	0	logfile
✔	7LFX	23308	2021-08-08	2021-01-19	3.1	2.80	—	3.0	0.010	0.65	0.0	0.05	13.33	0.00	2.226	9.82	0.25	2.3	97.7	0.0	-1.18	0.64	0.81	2.40	3.0	0.002	0.50	0.0	0.04	15.81	0.00	2.247	12.71	0.43	2.7	97.3	0.0	1.04	0.82	0.66	0.84	2.34	14846	1800	8	0	6	0	0	logfile
✔	7JR9	22444	2021-08-07	2020-08-11	2.95	3.21	—	3.1	0.008	0.82	0.0	0.05	8.26	0.01	2.235	4.11	0.00	3.1	96.9	0.0	-2.53	0.84	0.89	5.25	3.1	0.002	0.52	0.0	0.04	13.28	0.00	2.182	6.34	0.78	2.2	97.8	0.0	0.74	0.60	0.85	0.90	4.59	10021	1300	7	0	14	0	0	logfile
✔	6URT	20862	2021-08-08	2019-10-24	3.27	4.11	—	3.7	0.008	1.36	1.0	0.06	17.78	0.01	2.285	7.74	3.41	9.0	91.0	0.0	-4.88	0.73	0.83	2.80	3.7	0.002	0.70	0.0	0.04	14.81	0.00	2.178	10.13	0.32	6.6	93.4	0.0	-0.02	1.10	0.76	0.87	2.47	18263	2317	14	0	7	0	0	logfile
✔	6ZH8	11216	2021-08-10	2020-06-21	4.14	6.50	4.33	4.2	0.005	0.77	0.0	0.04	15.29	0.00	2.198	27.27	0.03	10.6	89.3	0.0	-1.45	0.91	0.85	—	4.2	0.002	0.65	0.0	0.04	15.25	0.00	2.140	13.71	0.00	6.6	93.4	0.0	0.38	1.14	0.90	0.84	—	29506	3668	3	19	26	0	0	logfile
✔	7ASD	11892	2021-08-10	2020-10-27	3.5	3.68	3.48	3.5	0.039	0.99	0.0	0.06	8.87	0.00	2.153	5.16	2.16	2.2	97.8	0.0	0.30	0.81	0.83	2.68	3.5	0.002	0.56	0.0	0.04	12.58	0.00	2.162	13.88	0.09	2.8	97.2	0.0	0.06	0.50	0.82	0.84	2.95	30296	3664	48	0	72	0	0	logfile
✔	6ZLM	11268	2021-08-15	2020-06-30	4.3	4.68	4.28	4.4	0.005	0.63	0.0	0.04	10.21	0.00	2.092	2.33	0.00	2.3	97.7	0.0	-1.17	0.80	0.84	—	4.4	0.002	0.52	0.0	0.04	12.00	0.00	1.941	7.90	0.00	1.4	98.6	0.0	1.49	1.10	0.80	0.87	—	214080	13920	72	0	156	0	108240	logfile
✔	7CR0	30443	2021-08-07	2020-08-12	3.1	3.35	—	3.4	0.005	0.63	0.0	0.04	14.38	0.00	2.212	5.63	0.00	4.0	96.0	0.0	-4.99	0.58	0.81	3.75	3.4	0.002	0.59	0.0	0.03	16.02	0.00	2.237	5.75	0.71	2.7	97.3	0.0	3.43	0.81	0.59	0.81	2.57	8188	1004	4	0	0	0	0	logfile

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