Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7EGK	31135	2021-12-01	2021-03-24	2.7	2.79	2.60	2.7	0.008	0.97	0.0	0.05	14.76	0.01	2.240	2.92	8.02	3.2	96.5	0.2	-5.67	0.74	0.87	3.24	2.7	0.002	0.65	0.0	0.04	16.72	0.00	2.238	6.15	1.64	2.6	97.4	0.0	1.06	1.21	0.73	0.88	2.12	9894	1317	12	0	6	0	0	logfile
✔	7KAT	22783	2021-12-02	2020-10-01	4.4	5.04	4.41	4.5	0.002	0.51	0.0	0.04	11.32	0.00	2.185	6.85	0.00	1.9	98.1	0.0	-0.63	0.65	0.83	—	4.5	0.002	0.57	0.0	0.04	12.07	0.00	2.070	9.26	0.00	2.1	97.9	0.0	2.26	1.32	0.65	0.85	—	10431	1340	6	0	0	0	0	logfile
✔	7NCK	12269	2021-12-01	2021-01-28	3.18	3.22	2.86	3.4	0.011	2.19	6.0	0.10	11.66	0.01	2.583	0.37	3.33	4.0	96.0	0.0	-2.54	0.39	0.71	4.89	3.4	0.002	0.57	0.0	0.06	15.96	0.00	2.157	6.82	0.74	3.0	97.0	0.0	-2.17	0.96	0.36	0.73	2.23	5430	384	6	0	0	0	2778	logfile
✔	7NVH	12604	2021-12-01	2021-03-15	3.0	3.23	3.00	3.2	0.006	0.73	0.0	0.05	14.27	0.01	2.145	7.70	0.69	5.6	94.4	0.0	-0.42	0.64	0.86	2.63	3.2	0.002	0.57	0.0	0.04	15.34	0.00	2.230	7.52	0.69	4.1	95.9	0.0	0.89	0.32	0.64	0.87	2.49	5528	717	1	0	1	0	0	logfile
✔	7Ki0	22882	2021-12-01	2020-10-22	2.5	2.66	2.41	2.6	0.007	0.86	0.0	0.06	13.88	0.00	2.218	7.79	0.10	3.0	97.0	0.0	-0.60	0.66	0.85	4.49	2.6	0.002	0.51	0.0	0.04	16.25	0.00	2.177	4.42	1.33	2.1	97.9	0.0	1.42	1.00	0.68	0.89	4.00	9242	1143	12	0	1	79	0	logfile
✔	7LHV	23351	2021-12-01	2021-01-26	2.75	3.33	2.83	3.3	0.006	0.75	0.0	0.04	14.49	0.00	2.299	4.65	0.00	3.5	96.5	0.0	0.97	0.55	0.73	2.12	3.3	0.002	0.50	0.0	0.04	14.34	0.00	2.191	5.35	0.52	3.6	96.4	0.0	1.15	0.56	0.53	0.75	2.94	9094	1150	6	0	8	2	0	logfile
✔	7DHi	30681	2021-12-01	2020-11-15	3.26	3.41	—	3.3	0.004	0.76	0.0	0.05	14.45	0.01	2.298	4.37	0.13	5.6	94.4	0.0	-5.36	0.77	0.84	3.51	3.4	0.002	0.61	0.0	0.04	16.25	0.00	2.188	8.41	0.13	4.9	95.1	0.0	-1.42	1.50	0.78	0.86	3.09	7799	1019	6	0	1	2	0	logfile
✔	6XEU	22150	2021-12-02	2020-06-13	3.2	3.84	—	3.7	0.008	0.82	4.0	0.06	15.45	0.01	2.387	2.63	2.83	11.3	88.7	0.0	-2.88	0.76	0.88	3.94	3.7	0.002	0.58	0.0	0.04	15.83	0.00	2.299	2.78	0.35	4.7	95.3	0.0	0.13	0.36	0.78	0.90	3.04	10544	1312	8	0	16	0	0	logfile
✔	7RPK	24617	2021-12-01	2021-08-03	2.7	2.92	2.71	2.9	0.015	1.75	1.0	0.10	14.23	0.01	1.695	0.59	0.21	3.0	97.0	0.0	0.02	0.63	0.80	4.47	2.9	0.002	0.59	0.0	0.04	15.70	0.00	2.211	5.50	1.24	2.3	97.7	0.0	2.10	1.02	0.72	0.88	3.63	10018	1104	5	0	40	42	0	logfile
✔	7RPH	24614	2021-12-01	2021-08-03	2.5	2.68	2.59	2.7	0.017	1.89	4.0	0.11	14.66	0.01	1.952	2.03	0.61	2.1	97.9	0.0	-0.70	0.53	0.76	4.93	2.7	0.002	0.61	0.0	0.04	15.96	0.00	2.202	6.54	2.33	1.7	98.3	0.0	1.75	1.30	0.67	0.85	2.95	8573	926	1	0	36	86	0	logfile
✔	7DTW	30856	2021-12-02	2021-01-06	4.5	4.74	—	3.6	0.007	0.99	0.0	0.06	13.61	0.01	2.267	9.03	0.00	10.3	89.7	0.0	-4.26	0.71	0.78	—	3.7	0.002	0.59	0.0	0.05	12.54	0.00	2.212	7.49	0.00	8.4	91.6	0.0	-1.22	0.53	0.71	0.79	—	10250	1556	8	0	14	0	0	logfile
✔	7S9B	24931	2021-12-02	2021-09-20	4.2	4.16	—	4.0	0.006	0.82	0.0	0.05	11.72	0.00	2.213	19.98	0.78	9.9	89.8	0.3	-0.99	0.61	0.81	—	4.0	0.002	0.67	0.0	0.04	11.96	0.00	2.251	11.22	0.00	6.7	93.3	0.0	0.44	0.44	0.60	0.79	—	10458	1356	2	0	0	0	0	logfile
✔	7N74	24219	2021-12-01	2021-06-09	2.8	3.52	2.84	3.3	0.006	0.89	0.0	0.10	12.93	0.01	1.844	7.52	0.00	2.2	97.8	0.0	0.74	0.75	0.84	3.27	3.3	0.002	0.58	0.0	0.04	14.62	0.00	2.122	5.25	1.93	1.4	98.6	0.0	1.71	0.54	0.69	0.83	2.47	7859	1036	1	0	4	3	0	logfile
✔	7RTN	24684	2021-12-01	2021-08-13	3.4	3.47	—	3.5	0.004	0.63	0.0	0.04	14.58	0.00	2.298	6.03	0.00	6.1	93.9	0.0	0.60	0.31	0.74	3.40	3.5	0.002	0.56	0.0	0.04	16.51	0.00	2.269	7.42	0.00	4.3	95.7	0.0	1.39	0.36	0.31	0.78	2.76	6018	810	3	0	0	0	0	logfile
✔	6G1S	4340	2021-12-01	2018-03-21	3.93	4.13	3.54	4.0	0.008	0.89	0.0	0.05	9.81	0.00	2.015	12.38	0.00	12.7	87.3	0.0	-4.00	0.62	0.78	1.56	4.0	0.002	0.65	0.0	0.04	14.04	0.00	2.022	25.02	0.00	8.4	91.6	0.0	0.42	1.86	0.62	0.78	1.99	9891	645	4	30	1	0	4096	logfile
✔	6GKH	0023	2021-12-02	2018-05-21	4.06	4.18	3.92	4.1	0.006	0.95	0.0	0.05	9.62	0.00	1.641	13.64	0.00	10.0	90.0	0.0	-4.26	0.61	0.79	—	4.1	0.002	0.75	0.0	0.04	11.96	0.00	1.908	21.53	0.00	7.5	92.5	0.0	-0.56	1.15	0.62	0.81	—	10587	685	4	30	4	0	4399	logfile
✔	6H66	0145	2021-12-01	2018-07-26	4.16	4.23	3.99	4.2	0.008	0.88	0.0	0.05	9.41	0.01	2.070	15.41	0.17	10.4	89.4	0.2	-3.09	0.61	0.76	—	4.2	0.002	0.63	0.0	0.04	11.99	0.00	2.063	21.55	0.00	7.8	92.2	0.0	0.56	1.86	0.62	0.77	—	10017	667	4	30	1	0	4120	logfile
✔	6NSK	0499	2021-12-01	2019-01-24	2.7	2.82	2.55	3.1	0.008	1.11	0.0	0.06	14.47	0.01	2.213	4.78	0.00	3.6	96.4	0.0	-3.23	0.62	0.77	5.14	3.1	0.002	0.56	0.0	0.04	14.80	0.00	2.256	5.65	1.96	2.9	97.1	0.0	2.76	0.42	0.61	0.80	3.31	9096	1092	12	0	18	0	0	logfile
✔	6oR5	9032	2021-12-02	2019-04-29	4.0	4.23	—	3.9	0.006	0.93	0.0	0.05	11.50	0.00	2.245	4.84	0.00	17.3	82.4	0.3	-5.53	0.76	0.79	—	3.9	0.002	0.55	0.0	0.04	8.14	0.00	2.245	2.56	0.00	10.4	89.6	0.0	0.12	1.87	0.78	0.79	—	10364	2058	1	0	5	0	0	logfile
✔	6JC3	9793	2021-12-01	2019-01-28	4.8	4.87	—	4.8	0.010	1.35	2.0	0.07	15.57	0.01	1.512	30.30	3.10	10.1	89.1	0.8	-4.39	0.42	0.78	—	4.7	0.002	0.68	0.0	0.04	13.77	0.00	2.192	10.58	0.00	4.4	95.6	0.0	0.92	3.51	0.42	0.79	—	3154	391	2	6	0	0	0	logfile

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