Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6R8B	4754	2022-12-15	2019-04-01	3.1	3.54	—	3.5	0.012	1.34	4.0	0.07	14.76	0.01	2.211	7.92	3.12	4.0	95.7	0.2	-3.32	0.45	0.56	3.49	3.5	0.002	0.55	0.0	0.04	15.89	0.00	2.124	7.09	0.57	4.5	95.5	0.0	-0.32	1.22	0.65	0.79	3.35	26052	1688	8	0	4	0	12788	logfile
✔	6Si8	10208	2022-12-15	2019-08-09	3.4	3.84	—	3.8	0.010	1.11	0.0	0.07	14.59	0.01	2.250	4.09	2.45	8.3	91.3	0.4	-3.81	0.70	0.76	3.61	3.8	0.002	0.62	0.0	0.04	15.10	0.00	1.980	6.64	0.42	3.5	96.5	0.1	-0.90	0.84	0.73	0.81	3.40	26542	1700	8	0	4	0	13086	logfile
✔	6i53	4411	2022-12-13	2018-11-12	3.2	3.37	3.20	3.3	0.006	0.88	0.0	0.05	9.18	0.01	2.264	4.12	0.00	3.7	96.3	0.0	-4.72	0.52	0.70	4.33	3.3	0.002	0.55	0.0	0.04	14.05	0.00	2.159	6.64	0.12	2.9	97.1	0.0	-0.16	0.62	0.72	0.86	3.82	15362	1821	16	0	34	0	0	logfile
✔	6H61	0143	2022-12-12	2018-07-25	4.02	4.20	3.87	4.0	0.007	0.84	0.0	0.05	9.67	0.00	2.107	14.83	0.18	9.5	90.5	0.0	-2.98	0.62	0.78	—	4.0	0.002	0.57	0.0	0.04	12.00	0.00	2.087	22.68	0.00	6.1	93.9	0.0	0.63	1.83	0.63	0.77	—	9912	660	4	30	1	0	4057	logfile
✔	5WC0	8794	2022-12-12	2017-06-29	4.4	4.61	—	4.4	0.006	1.06	0.0	0.05	8.99	0.01	2.043	5.46	0.11	7.9	91.9	0.2	-4.78	0.87	0.79	—	4.4	0.002	0.61	0.0	0.04	10.64	0.00	2.127	11.58	0.00	5.0	95.0	0.0	-0.06	3.07	0.87	0.81	—	11460	1660	12	0	6	0	0	logfile
✔	5TCQ	8399	2022-12-20	2016-09-15	3.6	3.82	—	3.7	0.013	1.54	0.0	0.06	8.28	0.01	2.447	2.37	0.00	3.3	94.0	2.7	-0.03	0.80	0.79	2.33	3.7	0.002	0.62	0.0	0.04	11.95	0.00	2.185	6.63	0.23	3.0	97.0	0.0	1.09	0.73	0.83	0.86	2.25	39180	5040	15	0	0	0	0	logfile
✔	6RVR	10010	2022-12-20	2019-05-31	3.46	3.63	—	3.5	0.008	0.75	0.0	0.05	14.89	0.00	2.082	8.59	0.57	10.3	89.7	0.0	-4.34	0.81	0.85	2.30	3.5	0.002	0.58	0.0	0.04	15.99	0.00	2.209	6.68	0.31	7.6	92.4	0.0	-0.52	0.45	0.79	0.84	1.87	37716	4680	12	0	0	0	0	logfile
✔	6QPi	4614	2022-12-11	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.002	0.44	0.0	0.04	4.28	0.00	2.462	1.49	0.00	2.8	97.2	0.0	2.25	1.20	0.40	0.62	—	2288	462	2	0	0	0	0	logfile
✔	6K9L	9950	2022-12-16	2019-06-16	4.27	4.50	—	4.2	0.001	0.49	0.0	0.04	9.31	0.00	2.240	4.79	4.95	4.6	95.4	0.0	-3.11	0.84	0.71	—	4.2	0.002	0.67	0.0	0.04	9.90	0.00	2.097	10.64	0.00	6.5	93.5	0.0	0.79	1.78	0.85	0.75	—	30601	5103	2	0	0	0	0	logfile
✔	6CG0	7470	2022-12-14	2018-02-19	3.17	3.69	—	3.3	0.003	0.60	0.0	0.04	20.01	0.00	2.205	15.37	4.08	2.5	97.4	0.1	-2.47	0.91	0.85	3.15	3.3	0.002	0.54	0.0	0.04	20.30	0.00	2.133	8.07	0.12	2.0	98.0	0.0	0.50	0.53	0.92	0.88	2.66	20080	1989	13	212	4	0	0	logfile
✔	6H66	0145	2022-12-12	2018-07-26	4.16	4.23	3.99	4.2	0.008	0.88	0.0	0.05	9.41	0.01	2.070	15.50	0.17	10.4	89.4	0.2	-3.09	0.61	0.76	—	4.2	0.002	0.63	0.0	0.04	11.99	0.00	2.063	21.64	0.00	7.8	92.2	0.0	0.56	1.86	0.62	0.77	—	10017	667	4	30	1	0	4120	logfile
✔	6o0Z	0585	2022-12-12	2019-02-17	3.3	3.94	—	3.6	0.006	0.72	0.0	0.04	16.28	0.00	2.302	2.58	0.27	6.3	93.7	0.0	-4.11	0.86	0.88	3.46	3.6	0.002	0.52	0.0	0.03	16.62	0.00	2.157	4.96	0.14	5.7	94.3	0.0	0.16	0.32	0.85	0.88	3.28	11912	1288	4	135	0	0	0	logfile
✔	6PKW	20368	2022-12-15	2019-06-30	4.5	4.77	—	4.4	0.007	0.94	0.0	0.05	9.19	0.01	2.239	4.19	0.00	5.8	94.2	0.0	-3.48	0.66	0.78	—	4.4	0.002	0.56	0.0	0.04	9.69	0.00	2.250	6.67	0.00	4.4	95.6	0.0	2.10	1.62	0.67	0.79	—	26262	4056	4	0	88	0	0	logfile
✔	6oT2	20192	2022-12-16	2019-05-02	4.1	4.25	4.02	4.1	0.009	0.87	0.0	0.05	8.41	0.01	2.066	6.19	0.00	7.3	92.7	0.0	-2.26	0.71	0.76	—	4.1	0.002	0.52	0.0	0.03	10.42	0.00	2.135	7.27	0.00	5.1	94.9	0.0	1.85	1.72	0.71	0.76	—	32311	2444	4	0	56	0	14975	logfile
✔	6LNC	0930	2022-12-16	2019-12-28	3.21	3.30	—	3.3	0.009	1.17	0.0	0.07	13.12	0.01	1.550	5.66	0.20	10.3	89.7	0.0	-4.69	0.73	0.80	3.39	3.3	0.002	0.60	0.0	0.04	14.32	0.00	2.206	8.28	0.16	7.1	92.9	0.0	-1.78	0.51	0.71	0.76	2.52	28937	3447	11	60	0	0	0	logfile
✔	6CJU	7484	2022-12-13	2018-02-26	3.35	3.50	—	3.4	0.011	1.50	0.0	0.07	15.93	0.01	2.277	6.56	1.49	7.3	92.7	0.0	-4.12	0.69	0.83	2.94	3.4	0.002	0.68	0.0	0.04	16.72	0.00	2.194	7.79	0.00	5.6	94.4	0.0	0.77	0.63	0.70	0.84	2.29	13076	1560	8	0	36	0	0	logfile
✔	6oiS	20080	2022-12-12	2019-04-09	3.6	3.71	—	3.6	0.009	1.05	0.0	0.06	10.80	0.01	2.315	5.76	0.68	4.2	95.8	0.0	-2.46	0.78	0.81	3.12	3.6	0.002	0.62	0.0	0.04	14.56	0.00	2.108	8.41	0.25	2.6	97.4	0.0	1.55	2.26	0.79	0.83	2.61	10732	1365	6	0	0	0	0	logfile
✔	6oGZ	20060	2022-12-15	2019-04-03	3.6	3.85	—	3.8	0.008	0.90	0.0	0.06	15.78	0.01	2.244	5.41	0.17	4.2	95.8	0.0	-5.51	0.47	0.86	2.42	3.8	0.002	0.58	0.0	0.04	17.31	0.00	2.010	8.88	0.50	2.8	97.2	0.0	-1.76	1.43	0.45	0.85	1.67	74962	9081	14	35	2	0	0	logfile
✔	6G9o	4367	2022-12-19	2018-04-11	4.25	4.47	—	4.2	0.007	0.84	0.0	0.05	8.43	0.01	2.233	1.42	0.00	4.0	96.0	0.0	-2.09	0.74	0.81	—	4.2	0.002	0.58	0.0	0.04	10.97	0.00	2.219	9.47	0.00	3.7	96.3	0.0	-0.15	1.31	0.74	0.83	—	35532	4308	6	0	0	0	0	logfile
✔	6oR5	9032	2022-12-12	2019-04-29	4.0	4.23	—	3.9	0.008	1.12	0.0	0.05	10.85	0.00	2.245	4.84	0.00	17.3	82.4	0.3	-5.53	0.76	0.79	—	3.9	0.002	0.56	0.0	0.04	7.06	0.00	2.221	3.09	0.00	12.5	87.5	0.0	-0.20	1.35	0.78	0.79	—	10364	2058	1	0	5	0	0	logfile

• ← previous
• Page 3 of 443
• next →