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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7RES | 24438 | 2023-04-29 | 2021-07-13 | 3.05 | 2.96 | — | 2.9 | 0.017 | 1.40 | 3.0 | 0.06 | 16.62 | 0.00 | 2.150 | 11.59 | 4.87 | 7.0 | 93.0 | 0.1 | -3.02 | 0.64 | 0.83 | 4.11 | 3.0 | 0.003 | 0.56 | 0.0 | 0.04 | 16.73 | 0.00 | 2.062 | 9.92 | 0.29 | 4.7 | 95.3 | 0.0 | -0.49 | 1.12 | 0.64 | 0.84 | 3.12 | 30088 | 3856 | 16 | 0 | 32 | 0 | 0 | logfile |
✔ | 7V21 | 31633 | 2023-04-22 | 2021-08-07 | 3.08 | 3.18 | — | 3.1 | 0.004 | 0.73 | 0.0 | 0.05 | 13.48 | 0.00 | 2.266 | 4.92 | 0.31 | 2.6 | 97.3 | 0.1 | 0.95 | 0.72 | 0.87 | 3.52 | 3.1 | 0.003 | 0.50 | 0.0 | 0.04 | 14.90 | 0.00 | 2.143 | 5.68 | 0.16 | 2.3 | 97.7 | 0.0 | 1.49 | 0.44 | 0.73 | 0.88 | 3.08 | 11903 | 1505 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6B3Q | 7041 | 2023-04-23 | 2017-09-22 | 3.7 | 3.84 | 3.74 | 3.7 | 0.005 | 1.03 | 0.0 | 0.06 | 12.29 | 0.01 | 2.212 | 4.06 | 0.00 | 2.6 | 97.4 | 0.0 | -4.53 | 0.80 | 0.78 | 1.51 | 3.7 | 0.003 | 0.72 | 0.0 | 0.04 | 15.75 | 0.00 | 2.159 | 13.68 | 0.47 | 4.4 | 95.6 | 0.0 | -0.72 | 0.85 | 0.82 | 0.80 | 1.53 | 15727 | 1929 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PWX | 20514 | 2023-04-27 | 2019-07-23 | 4.2 | 4.53 | — | 4.2 | 0.003 | 0.59 | 0.0 | 0.04 | 27.24 | 0.00 | 2.098 | 13.58 | 3.58 | 4.5 | 95.5 | 0.0 | -1.76 | 0.89 | 0.85 | — | 4.2 | 0.004 | 0.67 | 0.0 | 0.04 | 26.63 | 0.00 | 2.093 | 18.73 | 0.00 | 4.1 | 95.9 | 0.0 | 0.20 | 0.74 | 0.90 | 0.86 | — | 14411 | 1074 | 11 | 292 | 0 | 0 | 0 | logfile |
✔ | 7NJP | 12402 | 2023-04-27 | 2021-02-17 | 2.84 | 2.89 | — | 2.7 | 0.003 | 0.50 | 0.0 | 0.04 | 14.36 | 0.00 | 2.035 | 6.55 | 0.00 | 2.3 | 97.7 | 0.0 | 1.92 | 0.86 | 0.86 | 3.44 | 2.7 | 0.003 | 0.51 | 0.0 | 0.04 | 15.56 | 0.00 | 1.765 | 7.05 | 0.34 | 2.5 | 97.4 | 0.0 | 1.72 | 0.91 | 0.86 | 0.88 | 3.33 | 74554 | 4929 | 31 | 0 | 11 | 16 | 37305 | logfile |
✔ | 5YWD | 6853 | 2023-04-21 | 2017-11-29 | 4.2 | 4.38 | 4.11 | 4.2 | 0.003 | 0.73 | 0.0 | 0.04 | 14.12 | 0.00 | 2.031 | 12.08 | 6.20 | 4.1 | 95.9 | 0.0 | -1.54 | 0.62 | 0.74 | — | 4.2 | 0.003 | 0.76 | 0.0 | 0.04 | 13.58 | 0.00 | 1.928 | 14.00 | 0.00 | 4.0 | 96.0 | 0.0 | 1.14 | 1.51 | 0.65 | 0.77 | — | 8997 | 1154 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 7RAN | 24378 | 2023-04-20 | 2021-07-02 | 3.45 | 3.40 | — | 3.5 | 0.005 | 0.70 | 0.0 | 0.05 | 12.51 | 0.00 | 2.091 | 5.14 | 0.00 | 3.0 | 97.0 | 0.0 | 0.61 | 0.75 | 0.81 | 2.69 | 3.5 | 0.003 | 0.56 | 0.0 | 0.04 | 14.79 | 0.00 | 2.095 | 4.96 | 0.11 | 2.8 | 97.2 | 0.0 | 0.67 | 0.36 | 0.76 | 0.84 | 2.18 | 8523 | 1120 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7XDD | 33144 | 2023-04-21 | 2022-03-26 | 2.93 | 2.56 | 2.92 | 3.0 | 0.005 | 0.72 | 0.0 | 0.05 | 14.36 | 0.00 | 2.204 | 6.52 | 2.03 | 2.4 | 97.6 | 0.0 | 0.32 | 0.79 | 0.85 | 3.21 | 3.0 | 0.003 | 0.60 | 0.0 | 0.04 | 16.22 | 0.00 | 2.100 | 7.14 | 1.93 | 2.1 | 97.9 | 0.0 | 1.85 | 0.47 | 0.80 | 0.87 | 2.70 | 9021 | 1123 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HZ9 | 0315 | 2023-04-24 | 2018-10-22 | 4.8 | 4.94 | 4.76 | 4.8 | 0.009 | 1.01 | 0.0 | 0.05 | 14.59 | 0.01 | 1.957 | 3.22 | 0.51 | 2.9 | 97.1 | 0.0 | -0.60 | 0.83 | 0.76 | — | 4.8 | 0.004 | 0.62 | 0.0 | 0.04 | 14.32 | 0.00 | 1.779 | 15.48 | 0.00 | 5.2 | 94.8 | 0.0 | -0.16 | 2.82 | 0.84 | 0.78 | — | 67582 | 4120 | 26 | 6 | 12 | 0 | 33368 | logfile |
✔ | 7WJM | 32545 | 2023-04-22 | 2022-01-07 | 3.3 | 3.53 | — | 3.5 | 0.003 | 0.48 | 0.0 | 0.04 | 10.78 | 0.00 | 2.265 | 3.14 | 0.29 | 5.0 | 95.0 | 0.0 | 1.87 | 0.70 | 0.85 | 2.41 | 3.5 | 0.003 | 0.53 | 0.0 | 0.04 | 14.04 | 0.00 | 2.249 | 4.73 | 0.07 | 4.2 | 95.7 | 0.1 | 2.19 | 3.23 | 0.71 | 0.86 | 1.94 | 12970 | 1614 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KRJ | 23004 | 2023-04-27 | 2020-11-20 | 2.56 | 3.00 | 2.65 | 3.0 | 0.026 | 1.84 | 0.0 | 0.11 | 10.79 | 0.01 | 1.787 | 0.78 | 0.07 | 1.9 | 98.0 | 0.1 | 0.71 | 0.88 | 0.88 | 3.95 | 2.9 | 0.003 | 0.63 | 0.0 | 0.04 | 14.36 | 0.00 | 1.928 | 4.46 | 0.40 | 3.0 | 97.0 | 0.0 | 0.57 | 0.75 | 0.87 | 0.88 | 3.74 | 26866 | 1642 | 7 | 0 | 5 | 0 | 13407 | logfile |
✔ | 6T7A | 10391 | 2023-04-21 | 2019-10-21 | 3.7 | 4.20 | 3.60 | 3.7 | 0.006 | 0.87 | 0.0 | 0.05 | 25.96 | 0.01 | 0.733 | 6.61 | 0.00 | 1.8 | 98.1 | 0.1 | -3.03 | 0.85 | 0.81 | 1.66 | 3.7 | 0.005 | 0.76 | 0.0 | 0.04 | 26.57 | 0.00 | 2.152 | 16.37 | 1.40 | 2.5 | 97.5 | 0.0 | 2.32 | 1.74 | 0.87 | 0.85 | 1.25 | 10338 | 847 | 11 | 190 | 0 | 0 | 0 | logfile |
✔ | 6HZ6 | 0312 | 2023-04-24 | 2018-10-22 | 4.3 | 4.35 | 4.18 | 4.3 | 0.010 | 1.00 | 0.0 | 0.05 | 14.61 | 0.01 | 1.941 | 3.48 | 0.59 | 2.8 | 97.2 | 0.0 | -0.71 | 0.81 | 0.77 | — | 4.3 | 0.003 | 0.59 | 0.0 | 0.04 | 14.63 | 0.00 | 1.839 | 13.61 | 0.03 | 4.2 | 95.8 | 0.0 | -0.20 | 1.90 | 0.82 | 0.78 | — | 67582 | 4120 | 26 | 6 | 12 | 0 | 33368 | logfile |
✔ | 6HZ8 | 0314 | 2023-04-24 | 2018-10-22 | 4.3 | 4.47 | 4.31 | 4.4 | 0.009 | 0.99 | 0.0 | 0.05 | 14.59 | 0.01 | 1.943 | 3.29 | 0.59 | 2.7 | 97.3 | 0.0 | -0.48 | 0.77 | 0.73 | — | 4.4 | 0.005 | 0.67 | 0.0 | 0.04 | 14.60 | 0.00 | 1.739 | 14.95 | 0.00 | 5.3 | 94.7 | 0.0 | -0.46 | 1.89 | 0.79 | 0.76 | — | 67582 | 4120 | 26 | 6 | 12 | 0 | 33368 | logfile |
✔ | 6T7C | 10393 | 2023-04-21 | 2019-10-21 | 4.0 | 4.27 | 3.92 | 3.8 | 0.008 | 0.88 | 1.0 | 0.05 | 25.90 | 0.01 | 2.081 | 7.85 | 0.00 | 1.7 | 98.2 | 0.1 | -2.97 | 0.84 | 0.80 | — | 3.9 | 0.005 | 0.81 | 0.0 | 0.04 | 26.48 | 0.00 | 2.174 | 16.83 | 0.78 | 1.9 | 98.1 | 0.0 | 1.94 | 1.34 | 0.86 | 0.83 | — | 10606 | 917 | 12 | 190 | 0 | 0 | 0 | logfile |
✔ | 7KY8 | 23071 | 2023-04-21 | 2020-12-07 | 3.85 | 3.91 | — | 3.9 | 0.005 | 0.74 | 0.0 | 0.05 | 14.20 | 0.00 | 2.208 | 13.05 | 0.00 | 8.4 | 91.6 | 0.0 | -1.28 | 0.70 | 0.84 | 2.33 | 3.9 | 0.002 | 0.58 | 0.0 | 0.04 | 15.92 | 0.00 | 2.206 | 10.81 | 0.18 | 6.6 | 93.4 | 0.0 | -0.98 | 0.33 | 0.69 | 0.83 | 1.96 | 10520 | 1274 | 8 | 0 | 19 | 0 | 0 | logfile |
✔ | 7E83 | 31009 | 2023-04-22 | 2021-02-28 | 3.1 | 3.20 | 2.96 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 15.41 | 0.00 | 2.153 | 7.05 | 0.00 | 9.0 | 90.7 | 0.3 | -0.08 | 0.71 | 0.80 | 3.01 | 3.2 | 0.003 | 0.59 | 0.0 | 0.04 | 17.03 | 0.00 | 2.164 | 9.22 | 0.22 | 7.6 | 92.2 | 0.3 | 0.48 | 0.47 | 0.69 | 0.82 | 2.62 | 12704 | 1544 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XGC | 22180 | 2023-04-24 | 2020-06-17 | 4.1 | 4.25 | — | 4.2 | 0.002 | 0.43 | 0.0 | 0.04 | 7.79 | 0.00 | 2.215 | 5.83 | 0.16 | 2.3 | 97.7 | 0.0 | 1.43 | 0.80 | 0.81 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 11.21 | 0.00 | 2.197 | 11.45 | 0.05 | 3.6 | 96.4 | 0.0 | 0.02 | 1.31 | 0.82 | 0.83 | — | 17040 | 2157 | 21 | 0 | 21 | 0 | 0 | logfile |
✔ | 7DSC | 30830 | 2023-04-22 | 2020-12-30 | 3.5 | 3.66 | — | 3.5 | 0.004 | 0.56 | 0.0 | 0.04 | 12.79 | 0.00 | 2.299 | 4.53 | 0.00 | 1.6 | 98.4 | 0.0 | -0.35 | 0.53 | 0.73 | 2.13 | 3.5 | 0.004 | 0.92 | 0.0 | 0.05 | 16.30 | 0.00 | 2.229 | 13.81 | 0.66 | 2.8 | 97.2 | 0.0 | 1.83 | 0.97 | 0.57 | 0.77 | 2.26 | 11848 | 1528 | 16 | 0 | 8 | 0 | 0 | logfile |
✔ | 7U5i | 26351 | 2023-04-26 | 2022-03-02 | 3.26 | 3.14 | 3.37 | 3.2 | 0.002 | 0.56 | 0.0 | 0.04 | 11.62 | 0.00 | 2.219 | 7.74 | 2.82 | 0.8 | 99.2 | 0.0 | 0.87 | 0.63 | 0.75 | 1.83 | 3.2 | 0.003 | 0.72 | 0.0 | 0.05 | 16.39 | 0.00 | 2.159 | 15.05 | 0.16 | 2.1 | 97.9 | 0.0 | -0.02 | 0.67 | 0.67 | 0.78 | 1.94 | 23539 | 2904 | 16 | 0 | 0 | 123 | 0 | logfile |