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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5VZL | 8749 | 2023-11-16 | 2017-05-29 | 3.9 | 4.38 | — | 19.0 | 0.006 | 0.96 | 0.0 | 0.05 | 14.28 | 0.01 | 2.216 | 7.72 | 0.25 | 8.4 | 91.6 | 0.0 | -4.13 | 0.31 | 0.03 | -0.03 | 15.0 | 0.004 | 0.84 | 0.0 | 0.04 | 16.50 | 0.00 | 1.185 | 19.55 | 0.50 | 8.3 | 91.7 | 0.0 | -2.28 | 2.17 | 0.41 | 0.23 | 0.55 | 13915 | 1451 | 3 | 115 | 1 | 0 | 0 | logfile |
✔ | 6iV6 | 9742 | 2023-11-15 | 2018-12-02 | 3.6 | 3.59 | — | 3.6 | 0.005 | 1.04 | 0.0 | 0.05 | 16.90 | 0.01 | 2.261 | 4.91 | 0.61 | 6.7 | 93.3 | 0.1 | -5.17 | 0.64 | 0.75 | 2.10 | 3.6 | 0.003 | 0.67 | 0.0 | 0.04 | 18.26 | 0.00 | 2.179 | 8.16 | 0.30 | 8.3 | 91.7 | 0.0 | -2.33 | 0.90 | 0.69 | 0.78 | 2.12 | 10158 | 1209 | 2 | 26 | 0 | 0 | 0 | logfile |
✔ | 7SMS | 25207 | 2023-11-16 | 2021-10-26 | 3.18 | 3.33 | — | 3.3 | 0.006 | 0.78 | 0.0 | 0.05 | 15.18 | 0.00 | 2.187 | 5.21 | 0.00 | 2.8 | 97.2 | 0.0 | 1.21 | 0.78 | 0.85 | 3.74 | 3.3 | 0.003 | 0.49 | 0.0 | 0.04 | 15.26 | 0.00 | 2.216 | 6.79 | 0.27 | 2.0 | 98.0 | 0.0 | 1.82 | 1.14 | 0.79 | 0.87 | 3.39 | 17051 | 2015 | 15 | 0 | 32 | 0 | 0 | logfile |
✔ | 7C0M | 30267 | 2023-11-20 | 2020-05-01 | 3.9 | 4.76 | — | 3.8 | 0.011 | 0.83 | 0.0 | 0.05 | 27.43 | 0.00 | 2.189 | 13.32 | 0.73 | 5.5 | 94.5 | 0.0 | -1.85 | 0.76 | 0.57 | 1.06 | 3.7 | 0.004 | 0.62 | 0.0 | 0.03 | 27.48 | 0.00 | 2.155 | 14.41 | 0.10 | 3.5 | 96.5 | 0.0 | 1.86 | 1.26 | 0.86 | 0.76 | 0.84 | 29816 | 2234 | 24 | 580 | 2 | 0 | 0 | logfile |
✔ | 6Wi9 | 21683 | 2023-11-14 | 2020-04-09 | 4.3 | 4.37 | 4.24 | 4.3 | 0.002 | 0.50 | 0.0 | 0.04 | 12.85 | 0.00 | 2.214 | 5.38 | 0.00 | 4.2 | 95.8 | 0.0 | -3.72 | 0.77 | 0.78 | — | 4.3 | 0.003 | 0.69 | 0.0 | 0.04 | 13.92 | 0.00 | 2.127 | 13.74 | 0.00 | 6.4 | 93.6 | 0.0 | -0.60 | 0.80 | 0.78 | 0.78 | — | 8550 | 1108 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Y00 | 33536 | 2023-11-15 | 2022-06-03 | 3.96 | 4.73 | 3.89 | 3.9 | 0.004 | 0.69 | 0.0 | 0.04 | 27.68 | 0.00 | 1.717 | 12.80 | 0.31 | 1.5 | 98.5 | 0.0 | 0.85 | 0.90 | 0.80 | 0.94 | 3.9 | 0.004 | 0.71 | 0.0 | 0.04 | 29.06 | 0.00 | 2.099 | 13.39 | 0.94 | 2.5 | 97.5 | 0.0 | 1.96 | 2.03 | 0.93 | 0.87 | 1.19 | 12411 | 762 | 10 | 310 | 0 | 0 | 0 | logfile |
✔ | 6CHS | 7476 | 2023-11-21 | 2018-02-22 | 4.3 | 4.39 | — | 4.3 | 0.007 | 0.94 | 1.0 | 0.06 | 10.67 | 0.01 | 2.040 | 12.67 | 0.29 | 5.4 | 94.4 | 0.2 | -3.42 | 0.76 | 0.67 | — | 4.3 | 0.003 | 0.65 | 0.0 | 0.04 | 13.02 | 0.00 | 1.863 | 13.99 | 0.03 | 3.8 | 96.2 | 0.0 | 0.10 | 3.14 | 0.86 | 0.81 | — | 29502 | 3760 | 14 | 0 | 26 | 0 | 0 | logfile |
✔ | 6ZB4 | 11144 | 2023-11-19 | 2020-06-06 | 3.03 | 3.12 | 3.02 | 3.1 | 0.007 | 0.69 | 0.0 | 0.05 | 15.93 | 0.01 | 1.814 | 4.85 | 3.84 | 8.2 | 91.7 | 0.1 | -4.11 | 0.75 | 0.83 | 3.79 | 3.1 | 0.005 | 0.67 | 0.0 | 0.05 | 16.28 | 0.00 | 2.119 | 3.57 | 0.41 | 7.9 | 92.1 | 0.0 | -1.77 | 1.86 | 0.77 | 0.86 | 3.80 | 24841 | 3133 | 7 | 0 | 30 | 0 | 0 | logfile |
✔ | 5BKK | 9407 | 2023-11-16 | 2021-03-19 | 3.5 | 3.17 | — | 3.5 | 0.004 | 0.72 | 0.0 | 0.05 | 14.74 | 0.00 | 2.242 | 5.39 | 0.11 | 3.5 | 96.5 | 0.0 | -4.88 | 0.68 | 0.82 | 2.52 | 3.5 | 0.003 | 0.58 | 0.0 | 0.05 | 16.41 | 0.00 | 2.126 | 8.73 | 0.33 | 3.4 | 96.6 | 0.0 | -0.83 | 0.52 | 0.63 | 0.81 | 2.06 | 16831 | 2156 | 11 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PAG | 13269 | 2023-11-13 | 2021-07-29 | 4.0 | 4.22 | — | 4.1 | 0.005 | 0.75 | 0.0 | 0.05 | 13.86 | 0.01 | 2.177 | 12.66 | 0.00 | 6.3 | 93.7 | 0.0 | -1.70 | 0.30 | 0.60 | — | 4.2 | 0.004 | 1.05 | 0.0 | 0.05 | 16.63 | 0.00 | 2.144 | 20.38 | 0.23 | 10.5 | 89.5 | 0.0 | -3.28 | 1.36 | 0.34 | 0.68 | — | 4040 | 509 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 6Roi | 4973 | 2023-11-15 | 2019-05-13 | 3.7 | 3.83 | 3.74 | 3.8 | 0.008 | 1.13 | 0.0 | 0.06 | 16.72 | 0.01 | 1.709 | 5.05 | 0.23 | 5.0 | 95.0 | 0.0 | -5.18 | 0.69 | 0.80 | 1.91 | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 17.46 | 0.00 | 1.909 | 9.60 | 0.47 | 2.7 | 97.3 | 0.0 | -1.98 | 0.55 | 0.75 | 0.82 | 1.73 | 11775 | 1447 | 7 | 0 | 9 | 2 | 0 | logfile |
✔ | 7D10 | 30542 | 2023-11-13 | 2020-09-12 | 3.52 | 3.70 | — | 3.7 | 0.007 | 1.05 | 0.0 | 0.06 | 10.87 | 0.01 | 2.249 | 4.93 | 0.00 | 8.9 | 90.6 | 0.5 | -6.70 | 0.65 | 0.83 | 3.73 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 13.88 | 0.00 | 2.238 | 7.52 | 0.34 | 6.4 | 93.6 | 0.0 | -1.75 | 1.20 | 0.63 | 0.83 | 2.64 | 6424 | 892 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6VMD | 21240 | 2023-11-19 | 2020-01-27 | 4.53 | 4.68 | — | 4.5 | 0.008 | 1.16 | 0.0 | 0.06 | 16.43 | 0.01 | 2.192 | 12.90 | 0.78 | 10.1 | 89.7 | 0.1 | -3.98 | 0.92 | 0.83 | — | 4.5 | 0.003 | 0.70 | 0.0 | 0.04 | 14.96 | 0.00 | 2.015 | 17.21 | 0.03 | 7.5 | 92.4 | 0.1 | -1.14 | 0.63 | 0.92 | 0.82 | — | 27501 | 3576 | 14 | 0 | 5 | 0 | 0 | logfile |
✔ | 6VX5 | 21430 | 2023-11-15 | 2020-02-21 | 3.03 | 3.58 | — | 3.5 | 0.006 | 0.80 | 0.0 | 0.05 | 14.27 | 0.00 | 2.348 | 4.97 | 0.00 | 3.3 | 96.7 | 0.0 | -6.15 | 0.72 | 0.84 | 2.92 | 3.5 | 0.003 | 0.65 | 0.0 | 0.04 | 16.41 | 0.00 | 2.259 | 9.26 | 0.50 | 1.6 | 98.4 | 0.0 | -0.38 | 1.27 | 0.67 | 0.80 | 2.34 | 13056 | 1575 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6P7V | 20270 | 2023-11-18 | 2019-06-06 | 4.0 | 4.41 | 3.91 | 4.0 | 0.011 | 1.21 | 0.0 | 0.06 | 15.86 | 0.01 | 2.076 | 6.65 | 0.08 | 9.8 | 90.0 | 0.2 | -3.19 | 0.84 | 0.78 | — | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 16.43 | 0.00 | 1.944 | 12.10 | 0.38 | 8.8 | 91.2 | 0.1 | 0.63 | 0.83 | 0.83 | 0.77 | — | 23152 | 1384 | 4 | 0 | 0 | 0 | 11620 | logfile |
✔ | 6ZGE | 11203 | 2023-11-19 | 2020-06-18 | 2.6 | 2.79 | 2.72 | 2.7 | 0.010 | 0.94 | 0.0 | 0.06 | 12.63 | 0.01 | 2.344 | 2.22 | 0.73 | 4.7 | 95.2 | 0.1 | -0.97 | 0.76 | 0.85 | 4.43 | 2.7 | 0.003 | 0.65 | 0.0 | 0.05 | 15.37 | 0.00 | 2.175 | 3.47 | 1.22 | 3.9 | 96.1 | 0.0 | -0.44 | 0.49 | 0.78 | 0.86 | 3.99 | 26991 | 3294 | 39 | 0 | 81 | 48 | 0 | logfile |
✔ | 7F8W | 31494 | 2023-11-14 | 2021-07-02 | 3.1 | 2.94 | — | 3.2 | 0.005 | 1.04 | 0.0 | 0.06 | 14.09 | 0.01 | 2.273 | 8.70 | 0.00 | 4.6 | 95.4 | 0.0 | -1.99 | 0.54 | 0.58 | 1.20 | 3.1 | 0.003 | 0.73 | 0.0 | 0.04 | 16.01 | 0.00 | 2.035 | 18.99 | 0.65 | 5.4 | 94.6 | 0.0 | -0.80 | 1.22 | 0.58 | 0.65 | 0.61 | 8486 | 1087 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LNC | 0930 | 2023-11-20 | 2019-12-28 | 3.21 | 3.30 | — | 3.3 | 0.009 | 1.17 | 0.0 | 0.07 | 13.12 | 0.01 | 1.550 | 5.55 | 0.20 | 10.3 | 89.7 | 0.0 | -4.69 | 0.73 | 0.80 | 3.39 | 3.3 | 0.003 | 0.65 | 0.0 | 0.04 | 14.60 | 0.00 | 2.185 | 8.70 | 0.23 | 7.9 | 92.1 | 0.0 | -2.11 | 0.49 | 0.72 | 0.82 | 2.54 | 28937 | 3447 | 11 | 60 | 0 | 0 | 0 | logfile |
✔ | 7N8X | 24248 | 2023-11-14 | 2021-06-16 | 3.4 | 3.65 | — | 3.6 | 0.003 | 0.73 | 0.0 | 0.05 | 13.27 | 0.01 | 2.153 | 9.30 | 0.00 | 10.1 | 89.3 | 0.6 | -1.42 | 0.64 | 0.67 | 2.57 | 3.6 | 0.003 | 0.71 | 0.0 | 0.05 | 15.96 | 0.01 | 2.157 | 9.38 | 0.00 | 9.1 | 90.4 | 0.5 | -1.15 | 0.47 | 0.66 | 0.70 | 1.87 | 6617 | 831 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oEM | 20030 | 2023-11-17 | 2019-03-27 | 3.6 | 4.06 | — | 3.6 | 0.002 | 0.49 | 0.0 | 0.04 | 19.81 | 0.00 | 1.897 | 7.75 | 2.19 | 4.6 | 95.4 | 0.0 | -2.82 | 0.87 | 0.77 | 1.51 | 3.6 | 0.003 | 0.66 | 0.0 | 0.04 | 21.49 | 0.00 | 1.972 | 11.74 | 0.00 | 6.2 | 93.8 | 0.0 | -0.39 | 0.67 | 0.88 | 0.81 | 1.46 | 19707 | 2000 | 12 | 206 | 4 | 0 | 0 | logfile |