Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5VZL	8749	2023-11-16	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.72	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	15.0	0.004	0.84	0.0	0.04	16.50	0.00	1.185	19.55	0.50	8.3	91.7	0.0	-2.28	2.17	0.41	0.23	0.55	13915	1451	3	115	1	0	0	logfile
✔	6iV6	9742	2023-11-15	2018-12-02	3.6	3.59	—	3.6	0.005	1.04	0.0	0.05	16.90	0.01	2.261	4.91	0.61	6.7	93.3	0.1	-5.17	0.64	0.75	2.10	3.6	0.003	0.67	0.0	0.04	18.26	0.00	2.179	8.16	0.30	8.3	91.7	0.0	-2.33	0.90	0.69	0.78	2.12	10158	1209	2	26	0	0	0	logfile
✔	7SMS	25207	2023-11-16	2021-10-26	3.18	3.33	—	3.3	0.006	0.78	0.0	0.05	15.18	0.00	2.187	5.21	0.00	2.8	97.2	0.0	1.21	0.78	0.85	3.74	3.3	0.003	0.49	0.0	0.04	15.26	0.00	2.216	6.79	0.27	2.0	98.0	0.0	1.82	1.14	0.79	0.87	3.39	17051	2015	15	0	32	0	0	logfile
✔	7C0M	30267	2023-11-20	2020-05-01	3.9	4.76	—	3.8	0.011	0.83	0.0	0.05	27.43	0.00	2.189	13.32	0.73	5.5	94.5	0.0	-1.85	0.76	0.57	1.06	3.7	0.004	0.62	0.0	0.03	27.48	0.00	2.155	14.41	0.10	3.5	96.5	0.0	1.86	1.26	0.86	0.76	0.84	29816	2234	24	580	2	0	0	logfile
✔	6Wi9	21683	2023-11-14	2020-04-09	4.3	4.37	4.24	4.3	0.002	0.50	0.0	0.04	12.85	0.00	2.214	5.38	0.00	4.2	95.8	0.0	-3.72	0.77	0.78	—	4.3	0.003	0.69	0.0	0.04	13.92	0.00	2.127	13.74	0.00	6.4	93.6	0.0	-0.60	0.80	0.78	0.78	—	8550	1108	6	0	0	0	0	logfile
✔	7Y00	33536	2023-11-15	2022-06-03	3.96	4.73	3.89	3.9	0.004	0.69	0.0	0.04	27.68	0.00	1.717	12.80	0.31	1.5	98.5	0.0	0.85	0.90	0.80	0.94	3.9	0.004	0.71	0.0	0.04	29.06	0.00	2.099	13.39	0.94	2.5	97.5	0.0	1.96	2.03	0.93	0.87	1.19	12411	762	10	310	0	0	0	logfile
✔	6CHS	7476	2023-11-21	2018-02-22	4.3	4.39	—	4.3	0.007	0.94	1.0	0.06	10.67	0.01	2.040	12.67	0.29	5.4	94.4	0.2	-3.42	0.76	0.67	—	4.3	0.003	0.65	0.0	0.04	13.02	0.00	1.863	13.99	0.03	3.8	96.2	0.0	0.10	3.14	0.86	0.81	—	29502	3760	14	0	26	0	0	logfile
✔	6ZB4	11144	2023-11-19	2020-06-06	3.03	3.12	3.02	3.1	0.007	0.69	0.0	0.05	15.93	0.01	1.814	4.85	3.84	8.2	91.7	0.1	-4.11	0.75	0.83	3.79	3.1	0.005	0.67	0.0	0.05	16.28	0.00	2.119	3.57	0.41	7.9	92.1	0.0	-1.77	1.86	0.77	0.86	3.80	24841	3133	7	0	30	0	0	logfile
✔	5BKK	9407	2023-11-16	2021-03-19	3.5	3.17	—	3.5	0.004	0.72	0.0	0.05	14.74	0.00	2.242	5.39	0.11	3.5	96.5	0.0	-4.88	0.68	0.82	2.52	3.5	0.003	0.58	0.0	0.05	16.41	0.00	2.126	8.73	0.33	3.4	96.6	0.0	-0.83	0.52	0.63	0.81	2.06	16831	2156	11	0	6	0	0	logfile
✔	7PAG	13269	2023-11-13	2021-07-29	4.0	4.22	—	4.1	0.005	0.75	0.0	0.05	13.86	0.01	2.177	12.66	0.00	6.3	93.7	0.0	-1.70	0.30	0.60	—	4.2	0.004	1.05	0.0	0.05	16.63	0.00	2.144	20.38	0.23	10.5	89.5	0.0	-3.28	1.36	0.34	0.68	—	4040	509	1	0	4	0	0	logfile
✔	6Roi	4973	2023-11-15	2019-05-13	3.7	3.83	3.74	3.8	0.008	1.13	0.0	0.06	16.72	0.01	1.709	5.05	0.23	5.0	95.0	0.0	-5.18	0.69	0.80	1.91	3.8	0.003	0.64	0.0	0.04	17.46	0.00	1.909	9.60	0.47	2.7	97.3	0.0	-1.98	0.55	0.75	0.82	1.73	11775	1447	7	0	9	2	0	logfile
✔	7D10	30542	2023-11-13	2020-09-12	3.52	3.70	—	3.7	0.007	1.05	0.0	0.06	10.87	0.01	2.249	4.93	0.00	8.9	90.6	0.5	-6.70	0.65	0.83	3.73	3.7	0.003	0.64	0.0	0.04	13.88	0.00	2.238	7.52	0.34	6.4	93.6	0.0	-1.75	1.20	0.63	0.83	2.64	6424	892	4	0	4	0	0	logfile
✔	6VMD	21240	2023-11-19	2020-01-27	4.53	4.68	—	4.5	0.008	1.16	0.0	0.06	16.43	0.01	2.192	12.90	0.78	10.1	89.7	0.1	-3.98	0.92	0.83	—	4.5	0.003	0.70	0.0	0.04	14.96	0.00	2.015	17.21	0.03	7.5	92.4	0.1	-1.14	0.63	0.92	0.82	—	27501	3576	14	0	5	0	0	logfile
✔	6VX5	21430	2023-11-15	2020-02-21	3.03	3.58	—	3.5	0.006	0.80	0.0	0.05	14.27	0.00	2.348	4.97	0.00	3.3	96.7	0.0	-6.15	0.72	0.84	2.92	3.5	0.003	0.65	0.0	0.04	16.41	0.00	2.259	9.26	0.50	1.6	98.4	0.0	-0.38	1.27	0.67	0.80	2.34	13056	1575	6	0	1	0	0	logfile
✔	6P7V	20270	2023-11-18	2019-06-06	4.0	4.41	3.91	4.0	0.011	1.21	0.0	0.06	15.86	0.01	2.076	6.65	0.08	9.8	90.0	0.2	-3.19	0.84	0.78	—	4.0	0.003	0.61	0.0	0.04	16.43	0.00	1.944	12.10	0.38	8.8	91.2	0.1	0.63	0.83	0.83	0.77	—	23152	1384	4	0	0	0	11620	logfile
✔	6ZGE	11203	2023-11-19	2020-06-18	2.6	2.79	2.72	2.7	0.010	0.94	0.0	0.06	12.63	0.01	2.344	2.22	0.73	4.7	95.2	0.1	-0.97	0.76	0.85	4.43	2.7	0.003	0.65	0.0	0.05	15.37	0.00	2.175	3.47	1.22	3.9	96.1	0.0	-0.44	0.49	0.78	0.86	3.99	26991	3294	39	0	81	48	0	logfile
✔	7F8W	31494	2023-11-14	2021-07-02	3.1	2.94	—	3.2	0.005	1.04	0.0	0.06	14.09	0.01	2.273	8.70	0.00	4.6	95.4	0.0	-1.99	0.54	0.58	1.20	3.1	0.003	0.73	0.0	0.04	16.01	0.00	2.035	18.99	0.65	5.4	94.6	0.0	-0.80	1.22	0.58	0.65	0.61	8486	1087	6	0	0	0	0	logfile
✔	6LNC	0930	2023-11-20	2019-12-28	3.21	3.30	—	3.3	0.009	1.17	0.0	0.07	13.12	0.01	1.550	5.55	0.20	10.3	89.7	0.0	-4.69	0.73	0.80	3.39	3.3	0.003	0.65	0.0	0.04	14.60	0.00	2.185	8.70	0.23	7.9	92.1	0.0	-2.11	0.49	0.72	0.82	2.54	28937	3447	11	60	0	0	0	logfile
✔	7N8X	24248	2023-11-14	2021-06-16	3.4	3.65	—	3.6	0.003	0.73	0.0	0.05	13.27	0.01	2.153	9.30	0.00	10.1	89.3	0.6	-1.42	0.64	0.67	2.57	3.6	0.003	0.71	0.0	0.05	15.96	0.01	2.157	9.38	0.00	9.1	90.4	0.5	-1.15	0.47	0.66	0.70	1.87	6617	831	2	0	0	0	0	logfile
✔	6oEM	20030	2023-11-17	2019-03-27	3.6	4.06	—	3.6	0.002	0.49	0.0	0.04	19.81	0.00	1.897	7.75	2.19	4.6	95.4	0.0	-2.82	0.87	0.77	1.51	3.6	0.003	0.66	0.0	0.04	21.49	0.00	1.972	11.74	0.00	6.2	93.8	0.0	-0.39	0.67	0.88	0.81	1.46	19707	2000	12	206	4	0	0	logfile

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