Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WHP	32507	2022-05-14	2021-12-31	3.7	3.28	—	3.3	0.006	0.71	0.0	0.04	14.57	0.01	2.209	8.58	0.00	2.9	97.0	0.0	-0.85	0.30	0.77	2.67	3.3	0.006	0.85	0.0	0.04	16.91	0.01	2.084	9.17	0.42	3.3	96.6	0.0	-0.70	1.54	0.30	0.78	2.39	17038	2114	4	0	6	0	0	logfile
✔	6HRE	0259	2022-05-12	2018-09-26	3.2	2.74	2.87	3.3	0.019	1.47	0.0	0.11	13.34	0.01	2.474	6.57	0.00	12.0	88.0	0.0	-4.17	0.32	0.80	4.40	2.8	0.007	0.94	0.0	0.05	17.28	0.00	2.123	9.50	0.50	9.3	90.7	0.0	-3.49	0.81	0.30	0.78	3.87	3522	462	6	0	0	0	0	logfile
✔	6i5A	4413	2022-05-12	2018-11-13	2.3	2.34	1.50	2.3	0.012	1.84	1.0	0.10	14.16	0.01	2.431	6.70	0.74	1.3	97.4	1.3	-0.89	0.26	0.84	3.95	2.3	0.003	0.54	0.0	0.04	16.64	0.00	2.349	2.93	4.44	2.0	98.0	0.0	2.46	1.23	0.30	0.88	4.22	1206	153	1	0	0	0	0	logfile
✔	6K32	9907	2022-05-13	2019-05-16	3.2	3.73	—	3.8	0.009	1.19	1.0	0.08	11.34	0.01	1.345	10.28	1.25	6.3	93.3	0.3	-4.88	0.28	0.72	1.49	3.7	0.005	0.80	0.0	0.05	16.50	0.01	1.394	13.33	0.80	6.5	93.4	0.1	-1.59	1.62	0.31	0.83	2.31	61364	7723	10	8	6	0	0	logfile
✔	7RTN	24684	2022-05-12	2021-08-13	3.4	3.47	—	3.5	0.004	0.63	0.0	0.04	14.58	0.00	2.298	6.11	0.00	6.1	93.9	0.0	0.60	0.31	0.74	3.40	3.5	0.002	0.56	0.0	0.04	16.51	0.00	2.269	7.51	0.00	4.3	95.7	0.0	1.39	0.36	0.31	0.78	2.76	6018	810	3	0	0	0	0	logfile
✔	7QL4	14063	2022-05-12	2021-12-19	3.2	3.36	2.99	3.5	0.011	1.86	0.0	0.10	12.28	0.01	2.511	0.28	0.00	8.3	91.7	0.0	-1.77	0.26	0.51	0.51	3.4	0.003	0.65	0.0	0.05	15.13	0.00	1.992	9.90	0.25	3.2	96.8	0.0	-1.81	2.12	0.31	0.74	3.45	7074	456	6	0	0	0	3606	logfile
✔	3KTT	5148	2022-05-12	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	180.45	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	1.9	0.006	1.32	0.0	0.06	17.22	0.01	2.001	37.19	1.22	10.2	88.6	1.2	-2.54	1.70	0.31	0.43	—	3855	513	1	0	0	0	0	logfile
✔	6R4R	4727	2022-05-12	2019-03-23	3.4	3.01	1.77	3.8	0.008	1.43	0.0	0.08	10.87	0.01	2.308	6.73	0.00	12.0	88.0	0.0	-5.16	0.32	0.64	5.08	3.7	0.006	0.86	0.0	0.05	16.98	0.01	2.114	17.42	0.68	10.9	89.1	0.0	-4.75	3.88	0.31	0.68	3.78	4312	539	7	0	0	0	0	logfile
✔	7QKH	14042	2022-05-12	2021-12-17	3.17	3.37	2.07	3.5	0.011	2.48	5.0	0.19	15.22	0.01	2.470	2.26	0.00	14.6	85.4	0.0	-3.56	0.37	0.74	3.98	3.5	0.004	0.97	0.0	0.22	15.37	0.00	2.116	8.71	0.00	6.8	93.2	0.0	-2.57	2.30	0.31	0.69	4.34	3105	204	6	0	0	0	1593	logfile
✔	7U11	26274	2022-05-12	2022-02-19	3.2	2.77	—	3.4	0.004	0.67	0.0	0.06	16.16	0.00	2.186	14.68	2.36	6.0	94.0	0.0	-2.79	0.29	0.64	3.31	3.3	0.005	0.74	0.0	0.06	17.39	0.00	2.138	11.92	0.26	10.0	90.0	0.0	-3.49	1.44	0.31	0.69	3.96	3456	405	6	0	12	0	0	logfile
✔	6QJH	4563	2022-05-12	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.003	0.61	0.0	0.05	15.77	0.00	2.278	5.61	0.00	2.3	97.7	0.0	-2.55	1.57	0.31	0.78	2.85	1302	177	3	0	0	0	0	logfile
✔	6DLU	7957	2022-05-13	2018-06-02	3.75	3.84	—	3.8	0.009	0.94	0.0	0.05	9.95	0.00	1.944	12.65	0.23	5.7	94.3	0.0	-2.78	0.31	0.77	1.09	3.7	0.003	0.73	0.0	0.04	13.95	0.00	1.939	9.23	0.15	5.5	94.5	0.0	-0.12	2.18	0.32	0.82	1.56	11991	1481	4	0	4	0	0	logfile
✔	5GAK	3227	2022-05-15	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.06	20.85	0.01	0.816	23.97	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	3.8	0.006	0.94	3.0	0.05	19.64	0.01	1.918	24.95	0.40	9.8	89.8	0.4	-2.82	1.75	0.32	0.23	0.19	128975	6434	50	3597	234	0	0	logfile
✔	6QJP	4565	2022-05-12	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.003	0.70	0.0	0.05	12.40	0.00	2.347	10.42	0.00	1.1	98.9	0.0	-3.47	1.59	0.32	0.72	4.10	816	105	3	0	0	0	0	logfile
✔	5M3L	3434	2022-05-14	2016-10-15	3.8	2.49	—	3.8	0.013	1.53	7.0	0.08	12.48	0.01	1.442	10.31	0.59	7.4	91.5	1.1	-4.86	0.32	0.76	2.04	3.6	0.006	0.86	0.0	0.04	17.26	0.01	2.050	11.57	0.75	5.2	94.6	0.2	-0.47	0.90	0.33	0.75	1.47	19007	2394	27	0	12	0	0	logfile
✔	7PAG	13269	2022-05-12	2021-07-29	4.0	4.22	—	4.1	0.004	0.74	0.0	0.05	13.83	0.01	2.177	12.91	0.00	6.3	93.7	0.0	-1.70	0.30	0.60	—	4.2	0.003	0.97	0.0	0.05	16.30	0.00	2.192	15.83	0.00	6.3	93.7	0.0	-2.53	1.31	0.33	0.66	—	4040	509	1	0	4	0	0	logfile
✔	7RTo	24685	2022-05-12	2021-08-13	3.8	3.83	—	3.8	0.004	0.82	0.0	0.05	14.32	0.00	2.200	8.55	0.16	5.6	94.4	0.0	1.09	0.32	0.76	2.41	3.8	0.004	0.70	0.0	0.04	16.48	0.00	2.241	8.16	0.16	5.2	94.8	0.0	1.55	0.52	0.33	0.77	1.93	6607	888	3	0	0	0	0	logfile
✔	7QKK	14045	2022-05-12	2021-12-17	2.8	2.31	2.82	3.2	0.012	2.17	4.0	0.12	13.17	0.02	2.483	1.98	0.00	9.5	90.5	0.0	-3.44	0.37	0.77	4.39	3.2	0.007	0.83	0.0	0.05	17.75	0.00	2.156	12.45	2.02	6.8	93.2	0.0	-3.24	2.17	0.34	0.78	3.28	3537	228	3	0	0	0	1803	logfile
✔	7U12	26275	2022-05-12	2022-02-19	3.5	3.59	—	4.4	0.011	1.02	0.0	0.07	16.79	0.01	2.160	20.06	5.51	8.0	92.0	0.0	-3.00	0.29	0.45	2.77	4.2	0.005	0.86	0.0	0.06	15.96	0.00	2.181	16.28	0.00	10.5	89.5	0.0	-3.98	2.91	0.34	0.57	2.51	3456	405	6	0	12	0	0	logfile
✔	7U14	26277	2022-05-12	2022-02-19	4.5	4.22	—	4.6	0.006	0.90	0.0	0.06	18.13	0.00	2.369	21.08	6.30	10.5	89.5	0.0	-3.07	0.30	0.52	—	4.4	0.006	0.96	0.0	0.07	15.68	0.00	2.175	21.37	0.00	14.8	85.2	0.0	-4.22	1.65	0.34	0.63	—	3456	405	6	0	12	0	0	logfile

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