Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7P3R	13185	2022-12-11	2021-07-08	3.65	3.16	3.57	3.5	0.006	0.81	1.0	0.05	13.66	0.01	2.306	1.88	0.28	2.7	97.3	0.0	-3.67	0.30	0.70	1.05	3.5	0.003	0.58	0.0	0.04	14.64	0.00	2.165	4.67	0.56	2.1	97.9	0.0	3.57	0.56	0.29	0.64	1.05	7738	1338	4	0	0	0	0	logfile
✔	7WCo	32426	2022-12-12	2021-12-20	3.8	3.90	—	3.9	0.008	1.13	0.0	0.06	11.02	0.01	0.599	4.28	0.53	14.2	85.8	0.0	-5.43	0.28	0.77	2.77	3.9	0.003	0.73	0.0	0.04	15.01	0.01	2.177	8.75	1.50	8.1	91.9	0.0	-2.37	1.57	0.30	0.82	2.80	10740	1434	18	0	0	0	0	logfile
✔	6QJH	4563	2022-12-11	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.003	0.61	0.0	0.05	15.77	0.00	2.278	5.61	0.00	2.3	97.7	0.0	-2.55	1.57	0.30	0.78	2.85	1302	177	3	0	0	0	0	logfile
✔	6i5A	4413	2022-12-11	2018-11-13	2.3	2.34	1.50	2.3	0.012	1.84	1.0	0.10	14.16	0.01	2.431	6.70	0.74	1.3	97.4	1.3	-0.89	0.26	0.84	3.95	2.3	0.003	0.54	0.0	0.04	16.64	0.00	2.349	2.93	4.44	2.0	98.0	0.0	2.46	1.23	0.30	0.88	4.22	1206	153	1	0	0	0	0	logfile
✔	7WHP	32507	2022-12-13	2021-12-31	3.7	3.28	—	3.3	0.004	0.62	0.0	0.04	14.19	0.01	2.209	8.60	0.00	2.9	97.0	0.0	-0.85	0.30	0.77	2.67	3.3	0.003	0.56	0.0	0.04	16.21	0.00	2.112	8.90	0.37	3.1	96.8	0.0	-0.45	1.54	0.30	0.77	2.42	17038	2114	4	0	6	0	0	logfile
✔	7RTN	24684	2022-12-11	2021-08-13	3.4	3.47	—	3.5	0.004	0.63	0.0	0.04	14.58	0.00	2.298	6.11	0.00	6.1	93.9	0.0	0.60	0.31	0.74	3.40	3.5	0.002	0.56	0.0	0.04	16.51	0.00	2.269	7.51	0.00	4.3	95.7	0.0	1.39	0.36	0.31	0.79	2.76	6018	810	3	0	0	0	0	logfile
✔	7QKH	14042	2022-12-11	2021-12-17	3.17	3.37	2.07	3.5	0.011	2.48	5.0	0.19	15.22	0.01	2.470	2.26	0.00	14.6	85.4	0.0	-3.56	0.37	0.74	3.98	3.5	0.004	0.97	0.0	0.22	15.37	0.00	2.116	8.71	0.00	6.8	93.2	0.0	-2.57	2.30	0.31	0.69	4.34	3105	204	6	0	0	0	1593	logfile
✔	6R4R	4727	2022-12-11	2019-03-23	3.4	3.01	1.77	3.8	0.008	1.43	0.0	0.08	10.87	0.01	2.308	6.73	0.00	12.0	88.0	0.0	-5.16	0.32	0.64	5.08	3.7	0.005	0.82	0.0	0.05	16.51	0.00	2.111	15.74	2.27	9.1	90.9	0.0	-4.78	3.89	0.31	0.67	3.65	4312	539	7	0	0	0	0	logfile
✔	3KTT	5148	2022-12-11	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	180.45	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.0	0.004	1.18	0.0	0.05	17.18	0.01	2.023	26.84	0.49	9.4	89.6	1.0	-2.22	1.72	0.31	0.41	—	3855	513	1	0	0	0	0	logfile
✔	6K32	9907	2022-12-12	2019-05-16	3.2	3.73	—	3.8	0.009	1.20	1.0	0.08	11.34	0.01	1.345	10.28	1.25	6.3	93.3	0.3	-4.88	0.28	0.72	1.49	3.7	0.005	0.77	0.0	0.05	16.36	0.00	1.183	13.29	0.74	6.1	93.9	0.1	-1.29	1.62	0.31	0.83	2.35	61364	7723	10	8	6	0	0	logfile
✔	7QL4	14063	2022-12-11	2021-12-19	3.2	3.36	2.99	3.5	0.011	1.86	0.0	0.10	12.28	0.01	2.511	0.28	0.00	8.3	91.7	0.0	-1.77	0.26	0.51	0.51	3.4	0.003	0.59	0.0	0.05	15.13	0.00	2.055	8.49	0.00	1.8	98.2	0.0	-1.69	3.11	0.31	0.74	3.85	7074	456	6	0	0	0	3606	logfile
✔	7RTo	24685	2022-12-11	2021-08-13	3.8	3.83	—	3.8	0.004	0.82	0.0	0.05	14.32	0.00	2.200	8.55	0.16	5.6	94.4	0.0	1.09	0.32	0.76	2.41	3.8	0.003	0.66	0.0	0.04	16.52	0.00	2.246	8.71	0.49	5.4	94.6	0.0	1.37	1.46	0.32	0.78	1.87	6607	888	3	0	0	0	0	logfile
✔	6QJP	4565	2022-12-11	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.003	0.70	0.0	0.05	12.40	0.00	2.347	10.42	0.00	1.1	98.9	0.0	-3.47	1.59	0.32	0.72	4.10	816	105	3	0	0	0	0	logfile
✔	7U10	26273	2022-12-11	2022-02-19	3.0	3.45	—	4.3	0.003	0.57	0.0	0.05	15.69	0.00	2.230	10.70	0.00	6.8	93.2	0.0	-2.82	0.37	0.64	3.73	4.2	0.004	0.66	0.0	0.07	18.03	0.00	2.205	12.01	2.91	7.5	92.5	0.0	-3.34	2.75	0.32	0.72	3.19	3429	405	6	0	12	0	0	logfile
✔	6DLU	7957	2022-12-12	2018-06-02	3.75	3.84	—	3.8	0.009	0.94	0.0	0.05	9.95	0.00	1.944	12.65	0.23	5.7	94.3	0.0	-2.78	0.31	0.77	1.09	3.7	0.003	0.70	0.0	0.04	13.91	0.00	1.941	9.28	0.23	5.3	94.7	0.0	0.08	2.20	0.32	0.82	1.35	11991	1481	4	0	4	0	0	logfile
✔	8A1S	15086	2022-12-13	2022-06-02	4.0	3.83	3.95	37.0	0.008	0.74	0.0	0.05	10.01	0.00	1.988	10.32	0.97	3.9	96.0	0.2	-0.24	0.26	0.00	—	3.5	0.003	0.75	0.0	0.05	12.92	0.01	1.967	15.85	0.24	4.3	95.5	0.2	-1.09	1.62	0.32	0.20	—	67152	8528	32	0	32	0	0	logfile
✔	6QJM	4564	2022-12-11	2019-01-24	3.3	3.49	1.95	3.4	0.010	1.01	0.0	0.07	8.06	0.01	2.408	6.17	0.00	9.1	90.9	0.0	-2.36	0.38	0.76	3.31	3.5	0.003	0.58	0.0	0.06	13.83	0.00	2.178	4.49	0.00	5.1	94.9	0.0	-2.27	1.60	0.33	0.74	3.53	846	111	3	0	0	0	0	logfile
✔	7U12	26275	2022-12-11	2022-02-19	3.5	3.59	—	4.4	0.011	1.02	0.0	0.07	16.79	0.01	2.160	20.06	5.51	8.0	92.0	0.0	-3.00	0.29	0.45	2.77	4.3	0.004	0.82	0.0	0.06	15.76	0.00	2.102	13.33	0.79	9.3	90.7	0.0	-3.91	2.90	0.33	0.57	2.24	3456	405	6	0	12	0	0	logfile
✔	7U13	26276	2022-12-11	2022-02-19	2.9	3.67	—	4.2	0.017	2.41	0.0	0.07	17.78	0.01	2.120	29.95	6.30	11.3	88.0	0.8	-3.06	0.30	0.47	1.37	4.2	0.004	0.95	0.0	0.06	18.61	0.00	2.175	14.76	3.41	10.3	89.7	0.0	-4.10	6.72	0.33	0.56	1.24	3456	405	6	0	12	0	0	logfile
✔	6Qi8	4552	2022-12-13	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.30	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.004	0.95	0.0	0.05	17.69	0.00	2.099	19.02	0.32	8.5	91.5	0.0	-2.67	1.59	0.33	0.24	0.43	14789	1907	12	0	6	0	0	logfile

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