Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J2P	5499	2021-12-01	2012-11-30	3.6	3.28	—	3.4	0.009	1.92	0.0	0.12	17.49	0.02	2.155	110.36	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.004	0.95	0.0	0.05	17.92	0.01	1.899	74.77	1.47	22.8	73.8	3.4	-4.64	0.91	0.39	0.73	1.07	9890	1134	6	0	6	0	1086	logfile
✔	7DWV	30887	2021-12-01	2021-01-18	3.07	2.95	—	3.6	0.007	0.80	0.0	0.06	14.69	0.00	2.258	16.67	0.00	26.8	73.2	0.0	-7.45	0.41	0.75	4.09	4.1	0.004	0.73	0.0	0.05	17.17	0.00	2.189	18.36	0.00	23.2	76.8	0.0	-5.96	1.50	0.40	0.74	2.79	2064	258	6	0	0	0	0	logfile
✔	6X0V	21985	2021-12-01	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.46	0.0	0.04	13.09	0.00	2.230	19.17	0.00	6.0	94.0	0.0	2.59	1.22	0.40	0.74	—	1384	211	4	0	0	0	62	logfile
✔	6N9Y	0383	2021-12-01	2018-12-04	4.0	3.80	—	3.7	0.008	1.10	0.0	0.05	10.30	0.01	2.229	4.80	0.42	9.1	90.9	0.0	-4.98	0.38	0.73	—	3.7	0.003	0.69	0.0	0.04	15.57	0.00	2.155	13.95	0.00	8.9	91.1	0.0	-1.04	1.76	0.40	0.79	—	4527	552	1	0	0	0	0	logfile
✔	5LY6	4118	2021-12-01	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.48	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.81	0.0	0.04	13.96	0.00	2.167	15.68	0.24	10.2	89.3	0.4	-2.62	3.61	0.40	0.76	—	3725	471	1	0	0	0	0	logfile
✔	6VW2	21410	2021-12-01	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.005	0.96	0.0	0.05	14.94	0.00	2.171	15.12	0.95	19.5	80.5	0.0	-4.88	0.44	0.41	0.72	1.55	1800	240	10	0	0	0	0	logfile
✔	7ADJ	11727	2021-12-01	2020-09-15	2.8	3.02	2.79	3.0	0.014	1.99	4.0	0.11	14.68	0.01	2.562	0.51	0.18	6.9	93.1	0.0	-2.18	0.34	0.70	3.50	3.0	0.003	0.71	0.0	0.04	17.21	0.00	2.143	6.39	2.39	6.5	93.5	0.0	-1.05	1.26	0.41	0.77	2.89	9710	613	1	0	0	0	4790	logfile
✔	7JGF	22325	2021-12-01	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.51	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.8	0.002	0.48	0.0	0.04	13.28	0.00	2.151	52.23	0.41	5.2	94.8	0.0	1.10	0.63	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	5V6P	8637	2021-12-01	2017-03-17	4.1	4.04	—	4.1	0.015	1.37	0.0	0.08	9.65	0.01	2.463	1.41	0.00	2.6	97.0	0.4	0.18	0.40	0.58	—	4.0	0.003	0.65	0.0	0.03	12.71	0.00	1.883	12.62	0.00	2.4	97.4	0.2	3.20	1.62	0.41	0.66	—	9194	540	2	0	0	0	4676	logfile
✔	6QPi	4614	2021-12-01	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.002	0.44	0.0	0.04	4.28	0.00	2.462	1.49	0.00	2.8	97.2	0.0	2.25	1.20	0.41	0.62	—	2288	462	2	0	0	0	0	logfile
✔	7P68	13221	2021-12-01	2021-07-15	2.9	3.23	2.85	3.1	0.006	0.90	0.0	0.07	12.92	0.00	2.430	4.45	0.00	3.3	96.7	0.0	-3.06	0.46	0.80	3.76	3.1	0.005	0.82	0.0	0.05	16.34	0.00	2.099	12.51	5.91	6.7	93.3	0.0	-3.41	1.51	0.41	0.83	3.76	8120	1080	10	0	0	0	0	logfile
✔	7JYi	22526	2021-12-01	2020-08-30	3.4	3.52	—	3.5	0.008	0.75	0.0	0.05	16.05	0.00	2.104	14.16	5.45	10.3	89.2	0.5	-4.54	0.43	0.84	2.04	3.5	0.003	0.66	0.0	0.04	16.57	0.00	2.106	9.55	0.21	8.2	91.7	0.1	-1.64	0.66	0.41	0.85	1.96	8807	1152	4	0	0	0	0	logfile
✔	6PEo	20328	2021-12-01	2019-06-20	3.3	3.52	—	3.6	0.003	0.54	0.0	0.05	13.06	0.01	2.492	10.62	0.00	9.7	90.3	0.0	-1.64	0.41	0.82	3.20	3.6	0.006	0.64	0.0	0.06	15.74	0.00	2.435	9.07	0.00	8.1	91.9	0.0	-2.61	1.64	0.41	0.82	4.88	2205	320	5	0	0	0	0	logfile
✔	7BX7	30235	2021-12-01	2020-04-17	2.8	2.94	—	2.9	0.009	0.84	0.0	0.04	12.96	0.00	2.228	15.34	0.00	9.3	90.7	0.0	-5.83	0.40	0.78	6.36	2.9	0.004	0.60	0.0	0.04	13.78	0.00	2.166	11.86	1.72	8.5	91.5	0.0	-5.45	1.13	0.41	0.79	6.15	1896	270	6	0	0	0	0	logfile
✔	7NRV	12551	2021-12-01	2021-03-04	3.0	3.20	2.72	3.2	0.007	1.15	0.0	0.07	12.81	0.03	2.385	3.52	0.00	6.0	94.0	0.0	-3.05	0.48	0.83	3.35	3.2	0.007	0.82	0.0	0.05	16.13	0.00	2.216	7.96	1.34	4.4	95.6	0.0	-2.80	0.55	0.41	0.83	3.45	5870	770	10	0	0	0	0	logfile
✔	6PES	20331	2021-12-01	2019-06-20	3.6	3.82	—	4.0	0.009	0.70	0.0	0.06	12.87	0.01	2.432	11.45	0.00	12.3	87.7	0.0	-1.79	0.38	0.78	1.73	4.0	0.003	0.59	0.0	0.05	14.73	0.00	2.341	7.11	0.00	6.5	93.5	0.0	-2.43	0.56	0.41	0.81	2.65	4040	590	10	0	0	0	0	logfile
✔	6H6B	0148	2021-12-01	2018-07-26	3.4	3.13	—	3.5	0.008	1.10	0.0	0.20	8.13	0.00	2.530	5.82	0.00	14.3	85.7	0.0	-4.80	0.44	0.73	5.60	3.2	0.005	0.91	0.0	0.18	11.69	0.00	2.137	6.56	0.50	19.6	80.4	0.0	-4.04	1.83	0.41	0.78	3.27	8060	580	10	0	0	0	4100	logfile
✔	5MM4	3529	2021-12-01	2016-12-08	4.5	4.77	—	4.7	0.008	1.13	0.0	0.06	12.07	0.01	2.041	12.45	0.10	10.8	89.2	0.0	-4.68	0.40	0.73	—	4.7	0.003	0.76	0.0	0.05	14.36	0.01	1.992	21.33	0.00	7.4	92.6	0.0	-2.18	1.76	0.41	0.73	—	9776	1236	6	1	5	0	0	logfile
✔	6UZ3	20951	2021-12-01	2019-11-14	3.5	3.88	—	3.8	0.022	1.32	3.0	0.15	17.52	0.01	1.260	32.21	1.05	11.2	88.5	0.4	-3.89	0.42	0.70	1.32	3.8	0.005	0.86	0.0	0.05	17.39	0.01	2.070	18.82	0.84	7.6	92.3	0.1	-0.71	0.66	0.42	0.70	0.92	9446	1126	1	0	25	0	0	logfile
✔	6FLT	4276	2021-12-01	2018-01-28	3.42	3.32	—	3.5	0.014	1.15	0.0	0.06	8.31	0.00	2.330	9.03	0.00	14.3	85.7	0.0	-5.36	0.44	0.74	2.91	3.5	0.005	0.67	0.0	0.05	10.57	0.00	2.300	12.13	0.00	20.7	79.3	0.0	-5.03	2.04	0.42	0.79	4.07	8060	580	10	0	0	0	4100	logfile

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