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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7P3R | 13185 | 2022-12-11 | 2021-07-08 | 3.65 | 3.16 | 3.57 | 3.5 | 0.006 | 0.81 | 1.0 | 0.05 | 13.66 | 0.01 | 2.306 | 1.88 | 0.28 | 2.7 | 97.3 | 0.0 | -3.67 | 0.30 | 0.70 | 1.05 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 14.64 | 0.00 | 2.165 | 4.67 | 0.56 | 2.1 | 97.9 | 0.0 | 3.57 | 0.56 | 0.29 | 0.64 | 1.05 | 7738 | 1338 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WCo | 32426 | 2022-12-12 | 2021-12-20 | 3.8 | 3.90 | — | 3.9 | 0.008 | 1.13 | 0.0 | 0.06 | 11.02 | 0.01 | 0.599 | 4.28 | 0.53 | 14.2 | 85.8 | 0.0 | -5.43 | 0.28 | 0.77 | 2.77 | 3.9 | 0.003 | 0.73 | 0.0 | 0.04 | 15.01 | 0.01 | 2.177 | 8.75 | 1.50 | 8.1 | 91.9 | 0.0 | -2.37 | 1.57 | 0.30 | 0.82 | 2.80 | 10740 | 1434 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QJH | 4563 | 2022-12-11 | 2019-01-24 | 3.3 | 3.70 | 2.77 | 3.6 | 0.012 | 1.21 | 3.0 | 0.10 | 14.39 | 0.01 | 2.673 | 1.49 | 1.96 | 7.0 | 93.0 | 0.0 | -3.22 | 0.36 | 0.83 | 2.97 | 3.6 | 0.003 | 0.61 | 0.0 | 0.05 | 15.77 | 0.00 | 2.278 | 5.61 | 0.00 | 2.3 | 97.7 | 0.0 | -2.55 | 1.57 | 0.30 | 0.78 | 2.85 | 1302 | 177 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6i5A | 4413 | 2022-12-11 | 2018-11-13 | 2.3 | 2.34 | 1.50 | 2.3 | 0.012 | 1.84 | 1.0 | 0.10 | 14.16 | 0.01 | 2.431 | 6.70 | 0.74 | 1.3 | 97.4 | 1.3 | -0.89 | 0.26 | 0.84 | 3.95 | 2.3 | 0.003 | 0.54 | 0.0 | 0.04 | 16.64 | 0.00 | 2.349 | 2.93 | 4.44 | 2.0 | 98.0 | 0.0 | 2.46 | 1.23 | 0.30 | 0.88 | 4.22 | 1206 | 153 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WHP | 32507 | 2022-12-13 | 2021-12-31 | 3.7 | 3.28 | — | 3.3 | 0.004 | 0.62 | 0.0 | 0.04 | 14.19 | 0.01 | 2.209 | 8.60 | 0.00 | 2.9 | 97.0 | 0.0 | -0.85 | 0.30 | 0.77 | 2.67 | 3.3 | 0.003 | 0.56 | 0.0 | 0.04 | 16.21 | 0.00 | 2.112 | 8.90 | 0.37 | 3.1 | 96.8 | 0.0 | -0.45 | 1.54 | 0.30 | 0.77 | 2.42 | 17038 | 2114 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 7RTN | 24684 | 2022-12-11 | 2021-08-13 | 3.4 | 3.47 | — | 3.5 | 0.004 | 0.63 | 0.0 | 0.04 | 14.58 | 0.00 | 2.298 | 6.11 | 0.00 | 6.1 | 93.9 | 0.0 | 0.60 | 0.31 | 0.74 | 3.40 | 3.5 | 0.002 | 0.56 | 0.0 | 0.04 | 16.51 | 0.00 | 2.269 | 7.51 | 0.00 | 4.3 | 95.7 | 0.0 | 1.39 | 0.36 | 0.31 | 0.79 | 2.76 | 6018 | 810 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QKH | 14042 | 2022-12-11 | 2021-12-17 | 3.17 | 3.37 | 2.07 | 3.5 | 0.011 | 2.48 | 5.0 | 0.19 | 15.22 | 0.01 | 2.470 | 2.26 | 0.00 | 14.6 | 85.4 | 0.0 | -3.56 | 0.37 | 0.74 | 3.98 | 3.5 | 0.004 | 0.97 | 0.0 | 0.22 | 15.37 | 0.00 | 2.116 | 8.71 | 0.00 | 6.8 | 93.2 | 0.0 | -2.57 | 2.30 | 0.31 | 0.69 | 4.34 | 3105 | 204 | 6 | 0 | 0 | 0 | 1593 | logfile |
✔ | 6R4R | 4727 | 2022-12-11 | 2019-03-23 | 3.4 | 3.01 | 1.77 | 3.8 | 0.008 | 1.43 | 0.0 | 0.08 | 10.87 | 0.01 | 2.308 | 6.73 | 0.00 | 12.0 | 88.0 | 0.0 | -5.16 | 0.32 | 0.64 | 5.08 | 3.7 | 0.005 | 0.82 | 0.0 | 0.05 | 16.51 | 0.00 | 2.111 | 15.74 | 2.27 | 9.1 | 90.9 | 0.0 | -4.78 | 3.89 | 0.31 | 0.67 | 3.65 | 4312 | 539 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 3KTT | 5148 | 2022-12-11 | 2009-11-25 | 4.0 | 2.33 | — | 4.5 | 0.020 | 2.86 | 20.0 | 0.20 | 15.20 | 0.01 | 1.652 | 180.45 | 7.82 | 6.3 | 89.4 | 4.3 | -0.59 | 0.27 | 0.28 | — | 2.0 | 0.004 | 1.18 | 0.0 | 0.05 | 17.18 | 0.01 | 2.023 | 26.84 | 0.49 | 9.4 | 89.6 | 1.0 | -2.22 | 1.72 | 0.31 | 0.41 | — | 3855 | 513 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6K32 | 9907 | 2022-12-12 | 2019-05-16 | 3.2 | 3.73 | — | 3.8 | 0.009 | 1.20 | 1.0 | 0.08 | 11.34 | 0.01 | 1.345 | 10.28 | 1.25 | 6.3 | 93.3 | 0.3 | -4.88 | 0.28 | 0.72 | 1.49 | 3.7 | 0.005 | 0.77 | 0.0 | 0.05 | 16.36 | 0.00 | 1.183 | 13.29 | 0.74 | 6.1 | 93.9 | 0.1 | -1.29 | 1.62 | 0.31 | 0.83 | 2.35 | 61364 | 7723 | 10 | 8 | 6 | 0 | 0 | logfile |
✔ | 7QL4 | 14063 | 2022-12-11 | 2021-12-19 | 3.2 | 3.36 | 2.99 | 3.5 | 0.011 | 1.86 | 0.0 | 0.10 | 12.28 | 0.01 | 2.511 | 0.28 | 0.00 | 8.3 | 91.7 | 0.0 | -1.77 | 0.26 | 0.51 | 0.51 | 3.4 | 0.003 | 0.59 | 0.0 | 0.05 | 15.13 | 0.00 | 2.055 | 8.49 | 0.00 | 1.8 | 98.2 | 0.0 | -1.69 | 3.11 | 0.31 | 0.74 | 3.85 | 7074 | 456 | 6 | 0 | 0 | 0 | 3606 | logfile |
✔ | 7RTo | 24685 | 2022-12-11 | 2021-08-13 | 3.8 | 3.83 | — | 3.8 | 0.004 | 0.82 | 0.0 | 0.05 | 14.32 | 0.00 | 2.200 | 8.55 | 0.16 | 5.6 | 94.4 | 0.0 | 1.09 | 0.32 | 0.76 | 2.41 | 3.8 | 0.003 | 0.66 | 0.0 | 0.04 | 16.52 | 0.00 | 2.246 | 8.71 | 0.49 | 5.4 | 94.6 | 0.0 | 1.37 | 1.46 | 0.32 | 0.78 | 1.87 | 6607 | 888 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QJP | 4565 | 2022-12-11 | 2019-01-24 | 3.5 | 3.64 | 2.32 | 4.1 | 0.009 | 1.01 | 0.0 | 0.07 | 9.52 | 0.01 | 2.605 | 1.16 | 0.00 | 3.2 | 96.8 | 0.0 | -2.50 | 0.37 | 0.74 | 3.05 | 4.2 | 0.003 | 0.70 | 0.0 | 0.05 | 12.40 | 0.00 | 2.347 | 10.42 | 0.00 | 1.1 | 98.9 | 0.0 | -3.47 | 1.59 | 0.32 | 0.72 | 4.10 | 816 | 105 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7U10 | 26273 | 2022-12-11 | 2022-02-19 | 3.0 | 3.45 | — | 4.3 | 0.003 | 0.57 | 0.0 | 0.05 | 15.69 | 0.00 | 2.230 | 10.70 | 0.00 | 6.8 | 93.2 | 0.0 | -2.82 | 0.37 | 0.64 | 3.73 | 4.2 | 0.004 | 0.66 | 0.0 | 0.07 | 18.03 | 0.00 | 2.205 | 12.01 | 2.91 | 7.5 | 92.5 | 0.0 | -3.34 | 2.75 | 0.32 | 0.72 | 3.19 | 3429 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 6DLU | 7957 | 2022-12-12 | 2018-06-02 | 3.75 | 3.84 | — | 3.8 | 0.009 | 0.94 | 0.0 | 0.05 | 9.95 | 0.00 | 1.944 | 12.65 | 0.23 | 5.7 | 94.3 | 0.0 | -2.78 | 0.31 | 0.77 | 1.09 | 3.7 | 0.003 | 0.70 | 0.0 | 0.04 | 13.91 | 0.00 | 1.941 | 9.28 | 0.23 | 5.3 | 94.7 | 0.0 | 0.08 | 2.20 | 0.32 | 0.82 | 1.35 | 11991 | 1481 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8A1S | 15086 | 2022-12-13 | 2022-06-02 | 4.0 | 3.83 | 3.95 | 37.0 | 0.008 | 0.74 | 0.0 | 0.05 | 10.01 | 0.00 | 1.988 | 10.32 | 0.97 | 3.9 | 96.0 | 0.2 | -0.24 | 0.26 | 0.00 | — | 3.5 | 0.003 | 0.75 | 0.0 | 0.05 | 12.92 | 0.01 | 1.967 | 15.85 | 0.24 | 4.3 | 95.5 | 0.2 | -1.09 | 1.62 | 0.32 | 0.20 | — | 67152 | 8528 | 32 | 0 | 32 | 0 | 0 | logfile |
✔ | 6QJM | 4564 | 2022-12-11 | 2019-01-24 | 3.3 | 3.49 | 1.95 | 3.4 | 0.010 | 1.01 | 0.0 | 0.07 | 8.06 | 0.01 | 2.408 | 6.17 | 0.00 | 9.1 | 90.9 | 0.0 | -2.36 | 0.38 | 0.76 | 3.31 | 3.5 | 0.003 | 0.58 | 0.0 | 0.06 | 13.83 | 0.00 | 2.178 | 4.49 | 0.00 | 5.1 | 94.9 | 0.0 | -2.27 | 1.60 | 0.33 | 0.74 | 3.53 | 846 | 111 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7U12 | 26275 | 2022-12-11 | 2022-02-19 | 3.5 | 3.59 | — | 4.4 | 0.011 | 1.02 | 0.0 | 0.07 | 16.79 | 0.01 | 2.160 | 20.06 | 5.51 | 8.0 | 92.0 | 0.0 | -3.00 | 0.29 | 0.45 | 2.77 | 4.3 | 0.004 | 0.82 | 0.0 | 0.06 | 15.76 | 0.00 | 2.102 | 13.33 | 0.79 | 9.3 | 90.7 | 0.0 | -3.91 | 2.90 | 0.33 | 0.57 | 2.24 | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7U13 | 26276 | 2022-12-11 | 2022-02-19 | 2.9 | 3.67 | — | 4.2 | 0.017 | 2.41 | 0.0 | 0.07 | 17.78 | 0.01 | 2.120 | 29.95 | 6.30 | 11.3 | 88.0 | 0.8 | -3.06 | 0.30 | 0.47 | 1.37 | 4.2 | 0.004 | 0.95 | 0.0 | 0.06 | 18.61 | 0.00 | 2.175 | 14.76 | 3.41 | 10.3 | 89.7 | 0.0 | -4.10 | 6.72 | 0.33 | 0.56 | 1.24 | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 6Qi8 | 4552 | 2022-12-13 | 2019-01-18 | 3.75 | 3.92 | — | 10.4 | 0.004 | 0.91 | 0.0 | 0.05 | 16.35 | 0.01 | 1.999 | 4.30 | 0.19 | 5.5 | 94.5 | 0.0 | -5.84 | 0.17 | 0.02 | 0.43 | 9.9 | 0.004 | 0.95 | 0.0 | 0.05 | 17.69 | 0.00 | 2.099 | 19.02 | 0.32 | 8.5 | 91.5 | 0.0 | -2.67 | 1.59 | 0.33 | 0.24 | 0.43 | 14789 | 1907 | 12 | 0 | 6 | 0 | 0 | logfile |