Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5W9o	8790	2021-08-10	2017-06-23	4.5	4.59	4.45	4.5	0.013	1.67	0.0	0.08	10.49	0.01	1.325	7.67	0.08	3.9	95.4	0.7	1.29	0.73	0.77	—	4.4	0.006	1.17	9.0	0.06	13.11	0.01	1.637	27.52	0.08	7.8	91.5	0.7	-0.41	8.39	0.59	0.50	—	32958	4257	12	0	0	0	0	logfile
✔	6HD5	0201	2021-08-07	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.003	0.76	0.0	0.04	12.33	0.00	2.149	16.76	0.00	5.8	94.1	0.1	-0.19	2.13	0.45	0.51	—	9707	1234	3	0	0	0	0	logfile
✔	6ZD0	11172	2021-08-07	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	9.96	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	3.7	0.003	0.72	0.0	0.04	5.47	0.00	2.369	6.07	0.00	9.1	90.7	0.2	-3.20	2.04	0.53	0.51	—	7962	1611	6	0	0	0	0	logfile
✔	6C9Y	7438	2021-08-10	2018-01-29	4.25	4.33	—	9.7	0.008	1.53	5.0	0.08	13.66	0.01	2.064	6.64	5.32	7.8	90.7	1.5	-4.02	0.50	0.13	—	4.1	0.003	0.83	0.0	0.04	13.51	0.01	2.066	18.14	0.03	6.0	94.0	0.0	-1.52	2.88	0.66	0.51	—	28920	3685	7	0	3	0	0	logfile
✔	3JCD	6549	2021-08-15	2015-12-01	3.7	5.07	—	19.0	0.006	0.84	0.0	0.04	14.69	0.00	1.289	14.54	0.02	9.6	85.8	4.5	-2.43	0.34	0.04	0.30	3.4	0.012	1.73	4.0	0.08	22.58	0.01	1.060	92.69	0.27	19.3	79.2	1.5	-4.64	3.41	0.76	0.52	0.22	147815	5982	57	4715	0	0	0	logfile
✔	6V4J	21041	2021-08-09	2019-11-27	2.97	2.66	—	2.6	0.010	1.79	8.0	0.09	13.20	0.01	0.244	16.09	5.36	4.0	95.7	0.3	-0.54	0.47	0.48	1.90	2.6	0.012	1.23	1.0	0.04	16.82	0.01	2.001	20.17	3.67	5.7	94.3	0.0	-1.80	1.54	0.50	0.52	1.64	20637	2697	8	0	0	0	0	logfile
✔	5W7G	8780	2021-08-08	2017-06-19	4.5	4.20	—	4.2	0.015	1.17	0.0	0.07	15.16	0.01	2.165	6.62	0.45	1.2	98.8	0.0	-0.31	0.50	0.47	—	4.2	0.007	1.10	0.0	0.05	16.11	0.01	2.099	47.73	0.00	7.1	92.9	0.0	-1.27	1.95	0.52	0.52	—	53508	5397	44	504	0	0	0	logfile
✔	3JC2	3245	2021-08-07	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	17.88	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.028	2.38	2.0	0.05	17.84	0.00	1.835	21.05	0.00	5.3	94.0	0.6	-1.16	3.32	0.24	0.53	1.43	3911	482	4	0	32	0	0	logfile
✔	7JMJ	22396	2021-08-10	2020-07-31	4.5	5.51	—	4.3	0.007	1.08	0.0	0.05	10.58	0.01	1.373	9.84	0.62	11.3	88.5	0.3	-4.67	0.56	0.32	—	4.4	0.002	0.68	0.0	0.04	11.36	0.00	2.175	12.45	0.08	8.7	91.2	0.0	-1.55	1.54	0.74	0.53	—	120756	13500	12	0	3608	0	0	logfile
✔	6XAS	22114	2021-08-11	2020-06-04	3.8	3.01	3.14	2.9	0.002	0.49	0.0	0.04	10.96	0.00	1.961	4.90	1.49	2.2	97.8	0.0	-2.00	0.62	0.55	1.72	3.0	0.003	0.65	0.0	0.04	14.90	0.00	1.886	9.29	0.16	4.4	95.6	0.0	-0.09	0.83	0.61	0.53	1.51	46887	5804	16	73	3	0	0	logfile
✔	7NVR	12610	2021-08-12	2021-03-15	4.5	4.38	4.40	3.5	0.003	0.55	0.0	0.04	15.01	0.00	1.807	8.42	0.01	3.9	96.0	0.0	0.72	0.75	0.57	—	3.5	0.005	0.69	0.0	0.04	15.33	0.00	1.980	16.62	0.01	5.0	95.0	0.0	0.41	2.02	0.72	0.53	—	96126	11548	71	128	157	0	0	logfile
✔	7AST	11904	2021-08-10	2020-10-28	4.0	3.84	—	3.5	0.016	1.10	1.0	0.06	15.36	0.01	1.913	32.08	0.00	20.8	78.6	0.6	-4.78	0.61	0.46	—	3.6	0.021	1.30	1.0	0.06	17.85	0.01	1.678	39.84	0.21	19.9	79.7	0.5	-4.06	1.43	0.66	0.53	—	34518	4365	17	0	36	0	0	logfile
✔	5ZWo	6974	2021-08-12	2018-05-16	3.9	4.04	—	3.8	0.014	1.42	19.0	0.08	14.28	0.01	1.462	24.44	0.63	9.1	90.0	0.9	-4.00	0.65	0.62	1.56	3.7	0.005	0.75	0.0	0.04	14.30	0.00	1.917	13.58	0.27	6.9	92.8	0.3	-0.50	1.03	0.60	0.54	1.08	91261	13180	61	594	2	0	0	logfile
✔	6H05	0108	2021-08-11	2018-07-06	2.9	3.15	—	3.5	0.016	1.10	0.0	0.07	9.74	0.01	0.426	17.80	0.00	8.5	91.5	0.0	-5.50	0.36	0.13	0.50	3.2	0.008	1.06	0.0	0.05	15.53	0.01	1.620	23.84	1.82	5.3	94.7	0.0	-1.71	2.15	0.62	0.54	1.19	44544	5664	24	0	0	0	0	logfile
✔	7JLX	22383	2021-08-07	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.83	0.0	0.04	7.84	0.00	2.303	8.24	0.00	17.7	82.3	0.0	-3.14	2.43	0.49	0.54	—	3288	664	4	0	0	0	0	logfile
✔	6G90	4364	2021-08-09	2018-04-10	4.0	4.12	—	3.9	0.009	1.30	2.0	0.07	12.62	0.03	1.687	18.71	0.57	7.8	91.4	0.8	-3.55	0.51	0.41	—	3.9	0.009	1.05	2.0	0.04	15.00	0.01	1.618	17.97	0.14	7.3	92.4	0.3	-0.44	3.86	0.56	0.55	—	65050	6796	43	474	223	0	0	logfile
✔	7NCH	12266	2021-08-08	2021-01-28	3.84	3.76	3.69	3.8	0.013	1.61	2.0	0.10	14.68	0.00	2.485	0.00	0.19	9.4	90.6	0.0	-3.70	0.60	0.45	2.36	3.8	0.003	0.74	2.0	0.05	15.94	0.00	1.909	15.18	0.00	13.7	86.3	0.0	-4.43	1.79	0.66	0.55	1.69	11292	816	12	0	0	0	5796	logfile
✔	7EGA	31110	2021-08-11	2021-03-24	4.1	4.55	—	4.1	0.008	1.08	35.0	0.07	16.87	0.01	1.445	18.41	3.89	6.5	93.1	0.4	-3.75	0.60	0.28	—	3.9	0.004	0.70	0.0	0.04	15.52	0.00	1.982	15.05	0.00	5.2	94.7	0.1	-0.35	1.46	0.74	0.55	—	85697	10273	49	170	11	0	0	logfile
✔	6RAX	4786	2021-08-11	2019-04-08	3.99	4.07	3.97	4.1	0.011	1.46	27.0	0.13	18.03	0.01	1.308	23.64	6.70	19.2	80.3	0.5	-5.61	0.55	0.58	0.25	4.0	0.011	1.06	0.0	0.05	18.38	0.01	1.510	19.19	0.41	11.5	88.5	0.0	-2.87	1.53	0.57	0.55	0.42	40970	5062	19	29	6	0	0	logfile
✔	7JMH	22394	2021-08-10	2020-07-31	4.5	5.68	—	4.4	0.005	1.02	0.0	0.05	10.48	0.01	1.373	9.38	0.46	11.7	88.2	0.1	-4.60	0.56	0.31	—	4.3	0.003	0.70	0.0	0.04	11.30	0.00	2.083	16.96	0.00	10.2	89.7	0.1	-1.59	1.99	0.75	0.55	—	120756	13500	12	0	3608	0	0	logfile

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