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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7RSi | 24672 | 2022-12-12 | 2021-08-11 | 4.9 | 7.04 | 5.29 | 7.8 | 0.015 | 1.51 | 0.0 | 0.07 | 12.44 | 0.01 | 2.015 | 6.36 | 0.00 | 4.5 | 94.6 | 0.9 | -0.32 | 0.82 | 0.69 | — | 7.7 | 0.002 | 0.56 | 0.0 | 0.04 | 12.88 | 0.00 | 1.878 | 13.91 | 0.00 | 5.6 | 94.4 | 0.0 | -0.11 | 1.20 | 0.78 | 0.50 | — | 10886 | 686 | 2 | 0 | 2 | 0 | 5400 | logfile |
✔ | 7BHQ | 12190 | 2022-12-12 | 2021-01-11 | 3.2 | 1.77 | 3.76 | 2.6 | 0.003 | 0.50 | 0.0 | 0.04 | 14.12 | 0.00 | 2.168 | 13.46 | 0.00 | 3.0 | 97.0 | 0.0 | 1.03 | 0.20 | 0.46 | 0.97 | 1.9 | 0.003 | 0.63 | 0.0 | 0.04 | 16.58 | 0.00 | 2.076 | 15.42 | 0.37 | 3.0 | 97.0 | 0.0 | 0.69 | 0.84 | 0.21 | 0.50 | 1.17 | 7402 | 1010 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6V4J | 21041 | 2022-12-15 | 2019-11-27 | 2.97 | 2.66 | — | 2.6 | 0.010 | 1.79 | 8.0 | 0.09 | 13.20 | 0.01 | 0.244 | 16.50 | 5.36 | 4.0 | 95.7 | 0.3 | -0.54 | 0.47 | 0.48 | 1.90 | 2.6 | 0.003 | 0.83 | 0.0 | 0.04 | 16.26 | 0.00 | 2.009 | 14.88 | 3.76 | 4.8 | 95.2 | 0.0 | -1.18 | 1.52 | 0.49 | 0.51 | 1.38 | 20637 | 2697 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NKC | 12437 | 2022-12-16 | 2021-02-17 | 4.46 | 4.76 | — | 4.6 | 0.004 | 0.72 | 0.0 | 0.04 | 13.69 | 0.01 | 1.795 | 9.79 | 0.25 | 4.3 | 95.7 | 0.1 | -0.76 | 0.51 | 0.30 | — | 4.7 | 0.003 | 0.66 | 0.0 | 0.04 | 14.09 | 0.00 | 1.787 | 18.23 | 0.00 | 6.1 | 93.9 | 0.0 | -0.58 | 2.36 | 0.63 | 0.51 | — | 28788 | 1795 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 8DGi | 27423 | 2022-12-13 | 2022-06-23 | 3.94 | 4.27 | 4.04 | 4.1 | 0.005 | 1.16 | 4.0 | 0.06 | 15.93 | 0.01 | 2.263 | 8.97 | 0.67 | 5.9 | 93.8 | 0.3 | -2.32 | 0.67 | 0.52 | 0.27 | 4.1 | 0.003 | 0.73 | 0.0 | 0.04 | 16.27 | 0.00 | 2.117 | 19.22 | 0.40 | 6.2 | 93.7 | 0.1 | -0.21 | 0.56 | 0.66 | 0.51 | 0.27 | 13580 | 1690 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JC2 | 3245 | 2022-12-11 | 2015-11-15 | 3.6 | 3.58 | 3.97 | 3.7 | 0.012 | 1.63 | 2.0 | 0.08 | 14.90 | 0.01 | 1.175 | 18.51 | 7.32 | 11.5 | 84.5 | 4.0 | -4.52 | 0.22 | 0.59 | 1.48 | 3.6 | 0.003 | 0.81 | 0.0 | 0.04 | 17.10 | 0.00 | 2.171 | 13.19 | 0.24 | 6.6 | 92.8 | 0.6 | -1.30 | 3.32 | 0.23 | 0.52 | 1.58 | 3911 | 482 | 4 | 0 | 32 | 0 | 0 | logfile |
✔ | 7NCH | 12266 | 2022-12-12 | 2021-01-28 | 3.84 | 3.76 | 3.69 | 3.8 | 0.013 | 1.61 | 2.0 | 0.10 | 14.68 | 0.00 | 2.485 | 0.00 | 0.19 | 9.4 | 90.6 | 0.0 | -3.70 | 0.60 | 0.45 | 2.36 | 3.8 | 0.003 | 0.65 | 2.0 | 0.05 | 15.39 | 0.00 | 2.034 | 7.72 | 0.19 | 10.3 | 89.7 | 0.0 | -3.84 | 1.65 | 0.64 | 0.52 | 2.46 | 11292 | 816 | 12 | 0 | 0 | 0 | 5796 | logfile |
✔ | 7Z0L | 14427 | 2022-12-13 | 2022-02-23 | 4.0 | 4.43 | 4.11 | 4.3 | 0.005 | 0.93 | 0.0 | 0.06 | 14.10 | 0.01 | 2.223 | 7.63 | 0.65 | 5.5 | 94.5 | 0.0 | -0.67 | 0.58 | 0.49 | — | 4.4 | 0.003 | 0.65 | 0.0 | 0.04 | 15.57 | 0.00 | 2.120 | 14.32 | 0.52 | 4.3 | 95.7 | 0.0 | 0.50 | 0.96 | 0.59 | 0.52 | — | 13752 | 856 | 9 | 0 | 12 | 0 | 6713 | logfile |
✔ | 6XAS | 22114 | 2022-12-22 | 2020-06-04 | 3.8 | 3.01 | 3.14 | 2.9 | 0.002 | 0.49 | 0.0 | 0.04 | 10.96 | 0.00 | 1.961 | 5.01 | 1.49 | 2.2 | 97.8 | 0.0 | -2.00 | 0.62 | 0.55 | 1.72 | 3.0 | 0.003 | 0.63 | 0.0 | 0.04 | 14.53 | 0.00 | 1.869 | 9.15 | 0.12 | 3.9 | 96.1 | 0.0 | -0.07 | 0.77 | 0.61 | 0.53 | 1.54 | 46887 | 5804 | 16 | 73 | 3 | 0 | 0 | logfile |
✔ | 6YRG | 10889 | 2022-12-14 | 2020-04-20 | 4.8 | 6.94 | — | 7.9 | 0.009 | 1.41 | 18.0 | 0.08 | 13.69 | 0.01 | 1.270 | 31.66 | 0.48 | 9.4 | 90.3 | 0.3 | -2.26 | 0.66 | 0.32 | — | 7.9 | 0.003 | 0.72 | 0.0 | 0.04 | 12.89 | 0.00 | 2.134 | 15.92 | 0.00 | 9.5 | 90.3 | 0.1 | -1.43 | 3.42 | 0.75 | 0.53 | — | 21992 | 2736 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JLX | 22383 | 2022-12-11 | 2020-07-30 | 4.6 | 3.86 | — | 3.7 | 0.001 | 0.42 | 0.0 | 0.04 | 3.80 | 0.00 | 2.240 | 2.96 | 0.00 | 6.7 | 93.3 | 0.0 | 1.23 | 0.54 | 0.51 | — | 3.8 | 0.004 | 0.84 | 0.0 | 0.04 | 7.94 | 0.00 | 2.314 | 8.45 | 0.00 | 18.9 | 81.1 | 0.0 | -3.03 | 2.40 | 0.47 | 0.53 | — | 3288 | 664 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NVR | 12610 | 2022-12-17 | 2021-03-15 | 4.5 | 4.38 | 4.40 | 3.5 | 0.003 | 0.55 | 0.0 | 0.04 | 15.01 | 0.00 | 1.807 | 8.82 | 0.01 | 3.9 | 96.0 | 0.0 | 0.72 | 0.75 | 0.57 | — | 3.5 | 0.003 | 0.63 | 0.0 | 0.04 | 15.27 | 0.00 | 1.962 | 14.53 | 0.01 | 4.2 | 95.8 | 0.0 | 0.44 | 1.67 | 0.73 | 0.54 | — | 96126 | 11548 | 71 | 128 | 157 | 0 | 0 | logfile |
✔ | 3J5R | 5777 | 2022-12-13 | 2013-10-28 | 4.2 | 4.88 | — | 7.2 | 0.011 | 1.57 | 0.0 | 0.09 | 20.25 | 0.01 | 1.204 | 84.60 | 28.64 | 7.8 | 91.0 | 1.2 | -0.91 | 0.58 | 0.45 | — | 7.3 | 0.003 | 0.89 | 0.0 | 0.04 | 13.20 | 0.00 | 2.187 | 19.15 | 0.00 | 6.6 | 93.0 | 0.4 | 0.22 | 1.79 | 0.67 | 0.54 | — | 17564 | 2324 | 4 | 0 | 44 | 0 | 0 | logfile |
✔ | 8DGJ | 27427 | 2022-12-13 | 2022-06-23 | 4.02 | 4.32 | 4.05 | 4.1 | 0.007 | 1.24 | 2.0 | 0.06 | 14.25 | 0.01 | 2.213 | 11.18 | 0.13 | 7.4 | 92.3 | 0.3 | -2.71 | 0.69 | 0.56 | — | 4.1 | 0.003 | 0.70 | 0.0 | 0.04 | 13.95 | 0.00 | 2.061 | 18.05 | 0.00 | 6.6 | 93.3 | 0.1 | -0.52 | 0.55 | 0.68 | 0.54 | — | 13574 | 1689 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BC1 | 15959 | 2022-12-12 | 2022-10-14 | 2.93 | 3.48 | 2.73 | 3.5 | 0.002 | 0.46 | 0.0 | 0.04 | 10.38 | 0.00 | 2.265 | 7.96 | 3.43 | 2.9 | 97.1 | 0.0 | 1.53 | 0.38 | 0.52 | 1.52 | 3.5 | 0.004 | 0.80 | 0.0 | 0.05 | 15.62 | 0.01 | 2.021 | 15.81 | 1.50 | 3.8 | 96.2 | 0.0 | 0.65 | 1.05 | 0.39 | 0.54 | 1.25 | 8684 | 1054 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 7NSU | 12577 | 2022-12-19 | 2021-03-08 | 4.7 | 3.48 | 4.74 | 4.1 | 0.003 | 0.70 | 0.0 | 0.05 | 14.51 | 0.00 | 1.833 | 11.06 | 3.66 | 4.9 | 95.0 | 0.1 | -1.84 | 0.58 | 0.49 | — | 2.2 | 0.004 | 0.68 | 0.0 | 0.04 | 12.98 | 0.00 | 1.754 | 19.04 | 0.16 | 6.5 | 93.5 | 0.0 | -1.18 | 2.33 | 0.60 | 0.54 | — | 36070 | 2410 | 6 | 0 | 0 | 0 | 17527 | logfile |
✔ | 6oFJ | 20047 | 2022-12-12 | 2019-03-30 | 4.5 | 5.60 | 3.27 | 7.8 | 0.007 | 0.96 | 0.0 | 0.05 | 15.74 | 0.01 | 2.135 | 3.88 | 0.00 | 7.1 | 92.9 | 0.0 | -4.36 | 0.48 | 0.33 | — | 7.8 | 0.002 | 0.60 | 0.0 | 0.04 | 14.08 | 0.00 | 1.999 | 8.93 | 0.00 | 10.1 | 89.9 | 0.0 | -2.15 | 1.20 | 0.56 | 0.54 | — | 10310 | 650 | 2 | 0 | 0 | 0 | 5142 | logfile |
✔ | 3LoS | 5137 | 2022-12-12 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 87.93 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.004 | 1.15 | 0.0 | 0.05 | 15.79 | 0.01 | 2.143 | 26.45 | 0.01 | 19.2 | 76.6 | 4.1 | -4.17 | 1.41 | 0.61 | 0.54 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WoG | 32651 | 2022-12-11 | 2022-01-21 | 4.06 | 2.95 | — | 2.0 | 0.001 | 0.41 | 0.0 | 0.04 | 8.09 | 0.00 | 2.293 | 10.22 | 3.78 | 8.0 | 92.0 | 0.0 | -3.98 | 0.51 | 0.51 | — | 2.0 | 0.003 | 0.73 | 0.0 | 0.04 | 10.85 | 0.01 | 2.047 | 20.44 | 0.00 | 13.8 | 86.2 | 0.0 | -2.46 | 1.00 | 0.54 | 0.54 | — | 3362 | 433 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RAX | 4786 | 2022-12-20 | 2019-04-08 | 3.99 | 4.07 | 3.97 | 4.1 | 0.011 | 1.46 | 27.0 | 0.13 | 18.03 | 0.01 | 1.308 | 24.00 | 6.70 | 19.2 | 80.3 | 0.5 | -5.61 | 0.55 | 0.58 | 0.25 | 4.0 | 0.003 | 0.82 | 0.0 | 0.04 | 18.26 | 0.00 | 2.110 | 14.46 | 0.56 | 10.5 | 89.5 | 0.0 | -2.93 | 1.49 | 0.56 | 0.54 | 0.32 | 40970 | 5062 | 19 | 29 | 6 | 0 | 0 | logfile |