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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7URi | 26713 | 2024-03-10 | 2022-04-22 | 2.6 | 2.67 | 2.95 | 2.6 | 0.009 | 1.37 | 0.0 | 0.12 | 30.06 | 0.01 | 2.201 | 7.31 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.05 | 0.34 | — | 2.6 | 0.007 | 1.42 | 0.0 | 0.07 | 28.72 | 0.01 | 2.070 | 25.42 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.08 | 0.08 | 0.38 | — | 1905 | 0 | 1 | 90 | 0 | 0 | 0 | logfile |
✔ | 1oED | 1044 | 2024-03-10 | 2003-03-24 | 4.0 | 3.94 | — | 10.4 | 0.014 | 2.29 | 3.0 | 0.10 | 17.23 | 0.01 | 1.183 | 224.94 | 19.76 | 5.2 | 92.7 | 2.1 | -3.67 | 0.39 | 0.18 | — | 9.0 | 0.005 | 1.06 | 0.0 | 0.05 | 16.10 | 0.01 | 2.206 | 23.77 | 2.08 | 2.6 | 97.4 | 0.0 | 1.81 | 2.72 | 0.59 | 0.38 | — | 4926 | 636 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DFo | 27409 | 2024-03-19 | 2022-06-22 | 3.1 | 3.40 | 3.29 | 7.2 | 0.022 | 1.64 | 93.0 | 0.16 | 18.53 | 0.01 | 1.724 | 6.88 | 0.57 | 4.8 | 95.2 | 0.0 | -0.44 | 0.27 | 0.07 | 0.22 | 3.4 | 0.003 | 0.73 | 0.0 | 0.04 | 18.14 | 0.01 | 2.099 | 16.30 | 1.88 | 4.4 | 95.6 | 0.0 | -0.23 | 1.84 | 0.44 | 0.39 | 0.68 | 23861 | 2912 | 13 | 45 | 0 | 0 | 0 | logfile |
✔ | 3JCD | 6549 | 2024-03-24 | 2015-12-01 | 3.7 | 5.07 | — | 19.0 | 0.006 | 0.83 | 0.0 | 0.04 | 22.77 | 0.00 | 1.289 | 14.63 | 0.02 | 9.6 | 85.8 | 4.5 | -2.43 | 0.34 | 0.04 | 0.30 | 3.4 | 0.004 | 1.00 | 0.0 | 0.05 | 25.37 | 0.01 | 1.534 | 38.21 | 2.07 | 13.9 | 84.8 | 1.3 | -3.81 | 2.45 | 0.69 | 0.40 | -0.06 | 147815 | 5982 | 57 | 4715 | 0 | 0 | 0 | logfile |
✔ | 7NK1 | 12428 | 2024-03-20 | 2021-02-17 | 4.22 | 4.30 | — | 4.0 | 0.004 | 0.69 | 0.0 | 0.04 | 14.32 | 0.01 | 1.907 | 9.03 | 0.19 | 4.3 | 95.7 | 0.0 | -0.71 | 0.46 | 0.19 | — | 4.4 | 0.004 | 0.67 | 0.0 | 0.04 | 14.72 | 0.00 | 1.873 | 21.16 | 0.00 | 6.0 | 94.0 | 0.0 | -0.98 | 1.61 | 0.61 | 0.40 | — | 28747 | 1791 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 3JCE | 6550 | 2024-03-02 | 2015-12-01 | 3.2 | 4.36 | — | 14.0 | 0.008 | 0.88 | 0.0 | 0.04 | 22.68 | 0.00 | 1.106 | 32.64 | 0.47 | 10.4 | 84.8 | 4.8 | -2.93 | 0.33 | 0.04 | 0.16 | 3.1 | 0.006 | 1.17 | 5.0 | 0.05 | 25.14 | 0.01 | 1.590 | 49.53 | 2.65 | 13.3 | 85.5 | 1.2 | -3.72 | 1.89 | 0.70 | 0.41 | 0.15 | 154017 | 6546 | 59 | 4798 | 2 | 0 | 0 | logfile |
✔ | 3KTT | 5148 | 2024-03-10 | 2009-11-25 | 4.0 | 2.33 | — | 4.5 | 0.020 | 2.86 | 20.0 | 0.20 | 15.20 | 0.01 | 1.652 | 179.94 | 7.82 | 6.3 | 89.4 | 4.3 | -0.59 | 0.27 | 0.28 | — | 2.1 | 0.005 | 1.19 | 0.0 | 0.06 | 17.22 | 0.01 | 2.007 | 33.74 | 4.89 | 10.6 | 88.3 | 1.2 | -2.44 | 1.71 | 0.31 | 0.42 | — | 3855 | 513 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5L3P | 4001 | 2024-03-26 | 2016-05-24 | 3.7 | 4.66 | — | 16.0 | 0.006 | 0.60 | 0.0 | 0.19 | 22.20 | 0.02 | 2.115 | 7.18 | 0.00 | 8.2 | 89.4 | 2.4 | -1.95 | 0.44 | 0.11 | 0.16 | 3.9 | 0.005 | 0.99 | 2.0 | 0.04 | 24.17 | 0.01 | 1.748 | 42.81 | 1.76 | 10.4 | 89.0 | 0.6 | -2.39 | 2.18 | 0.66 | 0.42 | -0.25 | 149606 | 6419 | 58 | 4704 | 76 | 0 | 0 | logfile |
✔ | 7WoT | 32658 | 2024-03-17 | 2022-01-22 | 3.73 | 4.26 | — | 3.8 | 0.010 | 1.69 | 284.0 | 0.10 | 15.82 | 0.01 | 1.016 | 24.03 | 4.41 | 9.4 | 88.4 | 2.2 | -3.07 | 0.49 | 0.33 | 0.06 | 3.9 | 0.003 | 0.82 | 0.0 | 0.04 | 16.50 | 0.00 | 2.072 | 17.00 | 2.33 | 8.0 | 91.7 | 0.3 | -0.70 | 1.09 | 0.55 | 0.43 | 0.17 | 133827 | 17285 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 8F7J | 28905 | 2024-03-10 | 2022-11-18 | 4.32 | 4.45 | 4.63 | 8.9 | 0.005 | 0.92 | 0.0 | 0.05 | 15.44 | 0.01 | 2.282 | 15.12 | 0.26 | 5.7 | 94.3 | 0.0 | -3.18 | 0.38 | 0.32 | — | 4.3 | 0.003 | 0.68 | 0.0 | 0.04 | 14.09 | 0.01 | 2.143 | 18.06 | 0.00 | 5.7 | 94.3 | 0.0 | -2.85 | 2.92 | 0.44 | 0.43 | — | 3321 | 407 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TTS | 26122 | 2024-03-17 | 2022-02-01 | 2.9 | 12.34 | — | — | 0.008 | 0.99 | 1.0 | 0.08 | 12.97 | 0.01 | 1.788 | 5.64 | 0.30 | 3.2 | 96.6 | 0.1 | 1.89 | 0.77 | 0.55 | -0.20 | — | 0.003 | 0.60 | 0.0 | 0.04 | 13.75 | 0.00 | 1.912 | 17.34 | 0.43 | 3.4 | 96.5 | 0.1 | 2.16 | 0.99 | 0.71 | 0.43 | -0.20 | 18793 | 2686 | 12 | 0 | 23 | 0 | 0 | logfile |
✔ | 7APK | 11857 | 2024-03-16 | 2020-10-17 | 3.3 | 3.26 | — | 3.5 | 0.004 | 0.81 | 0.0 | 0.05 | 8.50 | 0.01 | 2.256 | 4.07 | 0.10 | 4.7 | 95.2 | 0.1 | -2.73 | 0.41 | 0.22 | 0.13 | 3.0 | 0.003 | 0.67 | 0.0 | 0.04 | 12.95 | 0.00 | 2.098 | 11.33 | 1.10 | 5.9 | 94.0 | 0.1 | 1.23 | 1.13 | 0.50 | 0.44 | 0.89 | 72697 | 9893 | 30 | 0 | 74 | 0 | 0 | logfile |
✔ | 8FEL | 29032 | 2024-03-14 | 2022-12-06 | 4.64 | 5.02 | 4.40 | 4.5 | 0.001 | 0.35 | 0.0 | 0.04 | 14.88 | 0.00 | 2.191 | 6.97 | 1.98 | 3.8 | 96.2 | 0.0 | -0.24 | 0.70 | 0.37 | — | 4.2 | 0.002 | 0.54 | 0.0 | 0.04 | 13.03 | 0.00 | 2.273 | 10.05 | 0.00 | 4.6 | 95.4 | 0.0 | -0.37 | 1.69 | 0.73 | 0.44 | — | 9201 | 1191 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JGF | 22325 | 2024-03-10 | 2020-07-19 | 4.69 | 4.81 | — | 4.8 | 0.002 | 0.62 | 0.0 | 0.04 | 13.16 | 0.01 | 2.109 | 26.74 | 0.41 | 4.6 | 95.4 | 0.0 | -0.87 | 0.39 | 0.43 | — | 4.7 | 0.002 | 0.48 | 0.0 | 0.04 | 13.25 | 0.00 | 2.145 | 50.93 | 0.41 | 5.2 | 94.8 | 0.0 | 1.11 | 0.62 | 0.41 | 0.44 | — | 4477 | 532 | 1 | 0 | 0 | 0 | 30 | logfile |
✔ | 8CTG | 26989 | 2024-03-10 | 2022-05-14 | 3.8 | 3.16 | 3.72 | 3.3 | 0.004 | 0.98 | 0.0 | 0.05 | 7.62 | 0.01 | 2.113 | 12.33 | 6.90 | 9.7 | 88.5 | 1.8 | -3.04 | 0.57 | 0.35 | -0.17 | 2.3 | 0.004 | 0.92 | 0.0 | 0.04 | 7.32 | 0.01 | 2.256 | 7.71 | 1.15 | 15.6 | 84.1 | 0.3 | -3.25 | 2.05 | 0.60 | 0.45 | 1.36 | 5100 | 1006 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7Woo | 32653 | 2024-03-14 | 2022-01-22 | 3.71 | 4.08 | — | 3.9 | 0.010 | 1.69 | 139.0 | 0.10 | 15.86 | 0.01 | 1.041 | 23.12 | 4.33 | 9.3 | 88.5 | 2.2 | -3.11 | 0.47 | 0.44 | 0.31 | 3.9 | 0.005 | 0.90 | 2.0 | 0.04 | 16.67 | 0.01 | 1.952 | 19.85 | 3.59 | 9.5 | 90.2 | 0.4 | -0.73 | 1.62 | 0.48 | 0.45 | 0.18 | 66949 | 8644 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8X63 | 38078 | 2024-03-10 | 2023-11-20 | 3.2 | 4.09 | 3.72 | 4.5 | 0.005 | 0.74 | 1.0 | 0.05 | 15.26 | 0.01 | 2.411 | 9.43 | 0.81 | 8.0 | 92.0 | 0.0 | -0.11 | 0.13 | 0.13 | 0.69 | 4.1 | 0.004 | 0.74 | 0.0 | 0.04 | 17.26 | 0.01 | 2.293 | 9.87 | 2.85 | 7.6 | 92.4 | 0.0 | -0.32 | 1.25 | 0.29 | 0.45 | 0.26 | 2252 | 270 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 7LVT | 23542 | 2024-03-17 | 2021-02-26 | 4.6 | 4.32 | — | 4.0 | 0.008 | 1.36 | 3.0 | 0.09 | 13.04 | 0.01 | 2.057 | 6.40 | 0.96 | 6.4 | 93.3 | 0.3 | -2.96 | 0.68 | 0.65 | — | 3.8 | 0.003 | 0.72 | 0.0 | 0.04 | 13.01 | 0.00 | 2.198 | 12.57 | 0.00 | 5.5 | 94.3 | 0.1 | 0.26 | 16.94 | 0.55 | 0.45 | — | 18944 | 2876 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FG3 | 31577 | 2024-03-14 | 2021-07-25 | 3.9 | 3.62 | — | 4.0 | 0.006 | 1.13 | 0.0 | 0.06 | 14.47 | 0.01 | 1.929 | 37.29 | 0.00 | 18.5 | 80.8 | 0.7 | -4.60 | 0.22 | 0.47 | -0.27 | 4.0 | 0.004 | 0.90 | 0.0 | 0.05 | 16.67 | 0.01 | 2.017 | 24.21 | 3.48 | 15.3 | 84.1 | 0.6 | -3.68 | 0.72 | 0.23 | 0.46 | 0.35 | 9054 | 1166 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6H05 | 0108 | 2024-03-24 | 2018-07-06 | 2.9 | 3.15 | — | 3.5 | 0.016 | 1.09 | 0.0 | 0.07 | 9.74 | 0.01 | 0.426 | 17.80 | 0.00 | 8.5 | 91.5 | 0.0 | -5.50 | 0.36 | 0.13 | 0.50 | 3.1 | 0.003 | 0.86 | 0.0 | 0.05 | 15.34 | 0.01 | 2.128 | 15.29 | 2.09 | 4.2 | 95.8 | 0.0 | -1.19 | 1.59 | 0.57 | 0.46 | 0.82 | 44544 | 5664 | 24 | 0 | 0 | 0 | 0 | logfile |