Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7U13	26276	2022-07-03	2022-02-19	2.9	3.67	—	4.2	0.017	2.41	0.0	0.07	17.78	0.01	2.120	29.95	6.30	11.3	88.0	0.8	-3.06	0.30	0.47	1.37	4.2	0.016	1.69	0.0	0.06	18.32	0.01	1.980	40.70	3.15	11.0	89.0	0.0	-3.17	3.39	0.28	0.50	1.09	3456	405	6	0	12	0	0	logfile
✔	7oTi	13060	2022-07-03	2021-06-10	4.2	4.80	—	7.9	0.014	1.99	12.0	0.10	16.95	0.02	2.507	0.86	4.71	10.8	87.9	1.4	-3.63	0.36	0.23	—	4.9	0.003	0.83	0.0	0.04	14.24	0.00	2.089	18.26	0.00	6.9	92.5	0.6	-1.00	1.74	0.51	0.50	—	9171	1182	1	0	0	0	0	logfile
✔	6CB8	7449	2022-07-06	2018-02-02	3.8	4.11	—	4.7	0.006	0.84	0.0	0.05	11.53	0.01	1.542	37.70	0.00	18.6	81.4	0.0	-5.72	0.54	0.27	0.20	4.0	0.011	0.99	1.0	0.04	15.21	0.01	1.760	22.20	0.27	11.3	88.7	0.0	-3.56	1.96	0.64	0.51	0.20	100224	6210	27	0	27	0	50436	logfile
✔	7BHQ	12190	2022-07-03	2021-01-11	3.2	1.77	3.76	2.6	0.003	0.50	0.0	0.04	14.12	0.00	2.168	13.46	0.00	3.0	97.0	0.0	1.03	0.20	0.46	0.97	2.1	0.020	1.62	1.0	0.05	16.56	0.00	1.850	17.30	0.24	3.6	96.4	0.0	0.60	0.82	0.21	0.52	1.38	7402	1010	5	0	0	0	0	logfile
✔	7NCH	12266	2022-07-03	2021-01-28	3.84	3.76	3.69	3.8	0.013	1.61	2.0	0.10	14.68	0.00	2.485	0.00	0.19	9.4	90.6	0.0	-3.70	0.60	0.45	2.36	3.8	0.003	0.65	2.0	0.05	15.39	0.00	2.034	7.72	0.19	10.3	89.7	0.0	-3.84	1.65	0.64	0.52	2.46	11292	816	12	0	0	0	5796	logfile
✔	6V4J	21041	2022-07-05	2019-11-27	2.97	2.66	—	2.6	0.010	1.79	8.0	0.09	13.20	0.01	0.244	16.50	5.36	4.0	95.7	0.3	-0.54	0.47	0.48	1.90	2.6	0.009	1.09	0.0	0.04	16.45	0.01	1.671	20.29	3.58	4.2	95.8	0.0	-1.78	1.51	0.50	0.52	1.52	20637	2697	8	0	0	0	0	logfile
✔	6YRG	10889	2022-07-05	2020-04-20	4.8	6.94	—	7.9	0.009	1.41	18.0	0.08	13.69	0.01	1.270	31.66	0.48	9.4	90.3	0.3	-2.26	0.66	0.32	—	7.8	0.003	0.75	0.0	0.04	12.97	0.00	2.136	16.35	0.00	9.3	90.6	0.1	-1.50	3.42	0.75	0.52	—	21992	2736	4	0	0	0	0	logfile
✔	7NVR	12610	2022-07-06	2021-03-15	4.5	4.38	4.40	3.5	0.003	0.55	0.0	0.04	15.01	0.00	1.807	8.74	0.01	3.9	96.0	0.0	0.72	0.75	0.57	—	3.5	0.003	0.64	0.0	0.04	15.30	0.00	1.968	14.42	0.01	4.4	95.6	0.0	0.45	1.68	0.73	0.53	—	96126	11548	71	128	157	0	0	logfile
✔	3JC2	3245	2022-07-03	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.017	1.85	1.0	0.04	17.47	0.01	2.061	19.15	0.00	7.9	91.3	0.9	-1.89	2.29	0.24	0.53	1.41	3911	482	4	0	32	0	0	logfile
✔	7NSU	12577	2022-07-07	2021-03-08	4.7	3.48	4.74	4.1	0.003	0.70	0.0	0.05	14.51	0.00	1.833	11.06	3.66	4.9	95.0	0.1	-1.84	0.58	0.49	—	2.2	0.004	0.68	0.0	0.04	12.69	0.00	1.718	19.21	0.10	6.3	93.7	0.0	-1.04	2.33	0.60	0.53	—	36070	2410	6	0	0	0	17527	logfile
✔	6EU3	3958	2022-07-07	2017-10-27	3.3	3.38	—	6.0	0.004	1.06	0.0	0.06	11.41	0.01	1.167	5.10	0.26	12.9	86.6	0.5	-5.18	0.23	0.03	0.17	3.3	0.014	1.36	4.0	0.05	15.60	0.01	1.547	24.09	0.12	14.8	84.8	0.4	-3.48	1.55	0.57	0.53	0.71	38330	4825	22	0	7	0	0	logfile
✔	7JLX	22383	2022-07-03	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.84	0.0	0.04	7.94	0.00	2.314	8.45	0.00	18.9	81.1	0.0	-3.03	2.40	0.47	0.53	—	3288	664	4	0	0	0	0	logfile
✔	6V6S	21073	2022-07-02	2019-12-05	4.3	3.91	—	3.8	0.006	0.75	1.0	0.05	13.81	0.00	2.102	10.56	0.63	5.0	94.9	0.1	-4.11	0.58	0.50	—	3.8	0.007	0.76	1.0	0.04	13.85	0.00	1.263	13.54	0.05	3.7	96.3	0.0	-0.16	1.00	0.56	0.53	—	106422	13155	53	14	721	0	0	logfile
✔	7QWS	14193	2022-07-06	2022-01-25	3.4	3.09	—	7.2	0.002	0.46	0.0	0.03	14.64	0.00	2.011	9.49	1.65	3.7	96.3	0.0	0.47	0.23	0.02	-0.02	3.0	0.008	1.22	3.0	0.06	19.93	0.01	0.959	37.21	0.73	12.5	87.4	0.1	-3.55	1.98	0.49	0.54	0.44	137913	7047	55	3769	126	0	0	logfile
✔	7K8A	22724	2022-07-03	2020-09-26	3.65	3.57	—	3.7	0.004	0.92	1.0	0.05	13.38	0.01	2.226	16.09	0.17	6.4	93.6	0.0	-1.30	0.40	0.55	0.67	3.7	0.004	0.85	0.0	0.04	15.78	0.01	2.217	13.77	0.51	4.3	95.7	0.0	-0.51	0.48	0.41	0.54	0.25	5513	723	1	0	0	0	0	logfile
✔	6oFJ	20047	2022-07-03	2019-03-30	4.5	5.60	3.27	7.8	0.007	0.96	0.0	0.05	15.74	0.01	2.135	3.88	0.00	7.1	92.9	0.0	-4.36	0.48	0.33	—	7.8	0.002	0.57	0.0	0.04	14.05	0.00	1.989	9.61	0.00	8.0	92.0	0.0	-2.00	1.40	0.55	0.54	—	10310	650	2	0	0	0	5142	logfile
✔	6CS1	7579	2022-07-05	2018-03-19	4.6	4.79	4.84	6.8	0.005	0.85	0.0	0.05	8.80	0.01	2.229	7.30	0.00	7.2	92.8	0.0	-4.20	0.61	0.31	—	4.5	0.003	0.70	0.0	0.05	11.19	0.00	2.114	17.51	0.00	6.0	94.0	0.0	-2.14	1.73	0.70	0.54	—	25995	3202	6	0	75	0	0	logfile
✔	6XAS	22114	2022-07-07	2020-06-04	3.8	3.01	3.14	2.9	0.002	0.49	0.0	0.04	10.96	0.00	1.961	5.01	1.49	2.2	97.8	0.0	-2.00	0.62	0.55	1.72	3.0	0.004	0.65	0.0	0.04	14.63	0.00	1.805	9.32	0.20	4.4	95.6	0.0	-0.24	0.76	0.61	0.54	1.64	46887	5804	16	73	3	0	0	logfile
✔	5ZWM	6972	2022-07-03	2018-05-16	3.4	3.37	—	3.3	0.007	1.15	10.0	0.06	12.54	0.01	1.786	19.05	0.72	5.9	93.5	0.6	-3.22	0.51	0.43	1.06	3.3	0.007	0.86	2.0	0.04	15.14	0.01	1.848	13.90	0.27	5.0	94.6	0.4	-0.50	0.83	0.53	0.54	1.11	111041	12858	61	634	8	0	0	logfile
✔	3LoS	5137	2022-07-03	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	88.10	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.007	1.33	0.0	0.05	16.09	0.01	1.037	31.44	0.00	20.2	75.6	4.2	-4.47	1.32	0.62	0.54	—	63712	8512	16	0	0	0	0	logfile

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