Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K8D	22728	2022-05-13	2020-09-26	4.33	4.48	—	4.7	0.004	1.12	0.0	0.06	12.53	0.01	2.205	23.61	1.86	4.3	95.7	0.0	-2.98	0.33	0.40	—	4.7	0.003	0.83	0.0	0.04	13.33	0.01	2.120	13.72	0.00	4.3	95.7	0.0	0.70	1.45	0.41	0.49	—	5529	725	1	0	0	0	0	logfile
✔	6HDD	0204	2022-05-15	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.08	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.5	0.004	1.00	0.0	0.05	13.37	0.01	1.472	25.40	0.00	17.3	82.3	0.4	-3.48	5.56	0.82	0.49	—	28154	3605	7	0	0	0	0	logfile
✔	7oTi	13060	2022-05-13	2021-06-10	4.2	4.80	—	7.9	0.014	1.99	12.0	0.10	16.95	0.02	2.507	0.86	4.71	10.8	87.9	1.4	-3.63	0.36	0.23	—	4.9	0.003	0.83	0.0	0.04	14.24	0.00	2.089	18.26	0.00	6.9	92.5	0.6	-1.00	1.74	0.51	0.50	—	9171	1182	1	0	0	0	0	logfile
✔	7NKC	12437	2022-05-16	2021-02-17	4.46	4.76	—	4.6	0.004	0.72	0.0	0.04	13.69	0.01	1.795	9.79	0.25	4.3	95.7	0.1	-0.76	0.51	0.30	—	4.7	0.011	0.97	1.0	0.04	14.20	0.01	1.829	18.97	0.00	5.7	94.3	0.0	-0.82	2.33	0.63	0.50	—	28788	1795	6	23	0	0	13868	logfile
✔	7AST	11904	2022-05-16	2020-10-28	4.0	3.84	—	3.5	0.016	1.10	1.0	0.06	15.36	0.01	1.913	32.75	0.00	20.8	78.6	0.6	-4.78	0.61	0.46	—	3.6	0.018	1.20	1.0	0.05	17.51	0.01	1.897	36.36	0.05	18.8	80.8	0.5	-4.06	2.28	0.64	0.50	—	34518	4365	17	0	36	0	0	logfile
✔	7U13	26276	2022-05-12	2022-02-19	2.9	3.67	—	4.2	0.017	2.41	0.0	0.07	17.78	0.01	2.120	29.95	6.30	11.3	88.0	0.8	-3.06	0.30	0.47	1.37	4.2	0.016	1.69	0.0	0.06	18.32	0.01	1.980	40.70	3.15	11.0	89.0	0.0	-3.17	3.39	0.28	0.50	1.09	3456	405	6	0	12	0	0	logfile
✔	6CB8	7449	2022-05-17	2018-02-02	3.8	4.11	—	4.7	0.006	0.84	0.0	0.05	11.53	0.01	1.542	37.70	0.00	18.6	81.4	0.0	-5.72	0.54	0.27	0.20	4.0	0.011	0.99	1.0	0.04	15.21	0.01	1.760	22.20	0.27	11.3	88.7	0.0	-3.56	1.96	0.64	0.51	0.20	100224	6210	27	0	27	0	50436	logfile
✔	6YRG	10889	2022-05-14	2020-04-20	4.8	6.94	—	7.9	0.009	1.41	18.0	0.08	13.69	0.01	1.270	31.66	0.48	9.4	90.3	0.3	-2.26	0.66	0.32	—	7.8	0.003	0.75	0.0	0.04	12.97	0.00	2.136	16.35	0.00	9.3	90.6	0.1	-1.50	3.42	0.75	0.52	—	21992	2736	4	0	0	0	0	logfile
✔	7NCH	12266	2022-05-13	2021-01-28	3.84	3.76	3.69	3.8	0.013	1.61	2.0	0.10	14.68	0.00	2.485	0.00	0.19	9.4	90.6	0.0	-3.70	0.60	0.45	2.36	3.8	0.003	0.65	2.0	0.05	15.39	0.00	2.034	7.72	0.19	10.3	89.7	0.0	-3.84	1.65	0.64	0.52	2.46	11292	816	12	0	0	0	5796	logfile
✔	6V4J	21041	2022-05-15	2019-11-27	2.97	2.66	—	2.6	0.010	1.79	8.0	0.09	13.20	0.01	0.244	16.50	5.36	4.0	95.7	0.3	-0.54	0.47	0.48	1.90	2.6	0.009	1.09	0.0	0.04	16.45	0.01	1.671	20.29	3.58	4.2	95.8	0.0	-1.78	1.51	0.50	0.52	1.52	20637	2697	8	0	0	0	0	logfile
✔	7BHQ	12190	2022-05-13	2021-01-11	3.2	1.77	3.76	2.6	0.003	0.50	0.0	0.04	14.12	0.00	2.168	13.46	0.00	3.0	97.0	0.0	1.03	0.20	0.46	0.97	2.1	0.020	1.62	1.0	0.05	16.56	0.00	1.850	17.30	0.24	3.6	96.4	0.0	0.60	0.82	0.21	0.52	1.38	7402	1010	5	0	0	0	0	logfile
✔	6V6S	21073	2022-05-12	2019-12-05	4.3	3.91	—	3.8	0.006	0.75	1.0	0.05	13.81	0.00	2.102	10.56	0.63	5.0	94.9	0.1	-4.11	0.58	0.50	—	3.8	0.004	0.73	1.0	0.04	13.91	0.00	2.147	9.45	0.06	3.5	96.5	0.0	0.20	1.02	0.57	0.53	—	106422	13155	53	14	721	0	0	logfile
✔	7JLX	22383	2022-05-12	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.84	0.0	0.04	7.94	0.00	2.314	8.45	0.00	18.9	81.1	0.0	-3.03	2.40	0.47	0.53	—	3288	664	4	0	0	0	0	logfile
✔	5ZWM	6972	2022-05-13	2018-05-16	3.4	3.37	—	3.3	0.007	1.15	10.0	0.06	12.54	0.01	1.786	19.05	0.72	5.9	93.5	0.6	-3.22	0.51	0.43	1.06	3.3	0.007	0.79	0.0	0.04	15.25	0.00	1.838	13.36	0.09	4.7	94.9	0.4	-0.07	0.88	0.53	0.53	0.99	111041	12858	61	634	8	0	0	logfile
✔	7NVR	12610	2022-05-17	2021-03-15	4.5	4.38	4.40	3.5	0.003	0.55	0.0	0.04	15.01	0.00	1.807	8.74	0.01	3.9	96.0	0.0	0.72	0.75	0.57	—	3.5	0.003	0.64	0.0	0.04	15.30	0.00	1.968	14.42	0.01	4.4	95.6	0.0	0.45	1.68	0.73	0.53	—	96126	11548	71	128	157	0	0	logfile
✔	7NSU	12577	2022-05-17	2021-03-08	4.7	3.48	4.74	4.1	0.003	0.70	0.0	0.05	14.51	0.00	1.833	11.06	3.66	4.9	95.0	0.1	-1.84	0.58	0.49	—	2.2	0.004	0.68	0.0	0.04	12.69	0.00	1.718	19.21	0.10	6.3	93.7	0.0	-1.04	2.33	0.60	0.53	—	36070	2410	6	0	0	0	17527	logfile
✔	3JC2	3245	2022-05-12	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.017	1.85	1.0	0.04	17.47	0.01	2.061	19.15	0.00	7.9	91.3	0.9	-1.89	2.29	0.24	0.53	1.41	3911	482	4	0	32	0	0	logfile
✔	6EU3	3958	2022-05-17	2017-10-27	3.3	3.38	—	6.0	0.004	1.06	0.0	0.06	11.41	0.01	1.167	5.10	0.26	12.9	86.6	0.5	-5.18	0.23	0.03	0.17	3.3	0.014	1.36	4.0	0.05	15.60	0.01	1.547	24.09	0.12	14.8	84.8	0.4	-3.48	1.55	0.57	0.53	0.71	38330	4825	22	0	7	0	0	logfile
✔	6CS1	7579	2022-05-15	2018-03-19	4.6	4.79	4.84	6.8	0.005	0.85	0.0	0.05	8.80	0.01	2.229	7.30	0.00	7.2	92.8	0.0	-4.20	0.61	0.31	—	4.5	0.003	0.70	0.0	0.05	11.19	0.00	2.114	17.51	0.00	6.0	94.0	0.0	-2.14	1.73	0.70	0.54	—	25995	3202	6	0	75	0	0	logfile
✔	6oFJ	20047	2022-05-13	2019-03-30	4.5	5.60	3.27	7.8	0.007	0.96	0.0	0.05	15.74	0.01	2.135	3.88	0.00	7.1	92.9	0.0	-4.36	0.48	0.33	—	7.8	0.002	0.57	0.0	0.04	14.05	0.00	1.989	9.61	0.00	8.0	92.0	0.0	-2.00	1.40	0.55	0.54	—	10310	650	2	0	0	0	5142	logfile

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