Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RSi	24672	2022-12-12	2021-08-11	4.9	7.04	5.29	7.8	0.015	1.51	0.0	0.07	12.44	0.01	2.015	6.36	0.00	4.5	94.6	0.9	-0.32	0.82	0.69	—	7.7	0.002	0.56	0.0	0.04	12.88	0.00	1.878	13.91	0.00	5.6	94.4	0.0	-0.11	1.20	0.78	0.50	—	10886	686	2	0	2	0	5400	logfile
✔	7BHQ	12190	2022-12-12	2021-01-11	3.2	1.77	3.76	2.6	0.003	0.50	0.0	0.04	14.12	0.00	2.168	13.46	0.00	3.0	97.0	0.0	1.03	0.20	0.46	0.97	1.9	0.003	0.63	0.0	0.04	16.58	0.00	2.076	15.42	0.37	3.0	97.0	0.0	0.69	0.84	0.21	0.50	1.17	7402	1010	5	0	0	0	0	logfile
✔	6V4J	21041	2022-12-15	2019-11-27	2.97	2.66	—	2.6	0.010	1.79	8.0	0.09	13.20	0.01	0.244	16.50	5.36	4.0	95.7	0.3	-0.54	0.47	0.48	1.90	2.6	0.003	0.83	0.0	0.04	16.26	0.00	2.009	14.88	3.76	4.8	95.2	0.0	-1.18	1.52	0.49	0.51	1.38	20637	2697	8	0	0	0	0	logfile
✔	7NKC	12437	2022-12-16	2021-02-17	4.46	4.76	—	4.6	0.004	0.72	0.0	0.04	13.69	0.01	1.795	9.79	0.25	4.3	95.7	0.1	-0.76	0.51	0.30	—	4.7	0.003	0.66	0.0	0.04	14.09	0.00	1.787	18.23	0.00	6.1	93.9	0.0	-0.58	2.36	0.63	0.51	—	28788	1795	6	23	0	0	13868	logfile
✔	8DGi	27423	2022-12-13	2022-06-23	3.94	4.27	4.04	4.1	0.005	1.16	4.0	0.06	15.93	0.01	2.263	8.97	0.67	5.9	93.8	0.3	-2.32	0.67	0.52	0.27	4.1	0.003	0.73	0.0	0.04	16.27	0.00	2.117	19.22	0.40	6.2	93.7	0.1	-0.21	0.56	0.66	0.51	0.27	13580	1690	2	0	0	0	0	logfile
✔	3JC2	3245	2022-12-11	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.003	0.81	0.0	0.04	17.10	0.00	2.171	13.19	0.24	6.6	92.8	0.6	-1.30	3.32	0.23	0.52	1.58	3911	482	4	0	32	0	0	logfile
✔	7NCH	12266	2022-12-12	2021-01-28	3.84	3.76	3.69	3.8	0.013	1.61	2.0	0.10	14.68	0.00	2.485	0.00	0.19	9.4	90.6	0.0	-3.70	0.60	0.45	2.36	3.8	0.003	0.65	2.0	0.05	15.39	0.00	2.034	7.72	0.19	10.3	89.7	0.0	-3.84	1.65	0.64	0.52	2.46	11292	816	12	0	0	0	5796	logfile
✔	7Z0L	14427	2022-12-13	2022-02-23	4.0	4.43	4.11	4.3	0.005	0.93	0.0	0.06	14.10	0.01	2.223	7.63	0.65	5.5	94.5	0.0	-0.67	0.58	0.49	—	4.4	0.003	0.65	0.0	0.04	15.57	0.00	2.120	14.32	0.52	4.3	95.7	0.0	0.50	0.96	0.59	0.52	—	13752	856	9	0	12	0	6713	logfile
✔	6XAS	22114	2022-12-22	2020-06-04	3.8	3.01	3.14	2.9	0.002	0.49	0.0	0.04	10.96	0.00	1.961	5.01	1.49	2.2	97.8	0.0	-2.00	0.62	0.55	1.72	3.0	0.003	0.63	0.0	0.04	14.53	0.00	1.869	9.15	0.12	3.9	96.1	0.0	-0.07	0.77	0.61	0.53	1.54	46887	5804	16	73	3	0	0	logfile
✔	6YRG	10889	2022-12-14	2020-04-20	4.8	6.94	—	7.9	0.009	1.41	18.0	0.08	13.69	0.01	1.270	31.66	0.48	9.4	90.3	0.3	-2.26	0.66	0.32	—	7.9	0.003	0.72	0.0	0.04	12.89	0.00	2.134	15.92	0.00	9.5	90.3	0.1	-1.43	3.42	0.75	0.53	—	21992	2736	4	0	0	0	0	logfile
✔	7JLX	22383	2022-12-11	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.84	0.0	0.04	7.94	0.00	2.314	8.45	0.00	18.9	81.1	0.0	-3.03	2.40	0.47	0.53	—	3288	664	4	0	0	0	0	logfile
✔	7NVR	12610	2022-12-17	2021-03-15	4.5	4.38	4.40	3.5	0.003	0.55	0.0	0.04	15.01	0.00	1.807	8.82	0.01	3.9	96.0	0.0	0.72	0.75	0.57	—	3.5	0.003	0.63	0.0	0.04	15.27	0.00	1.962	14.53	0.01	4.2	95.8	0.0	0.44	1.67	0.73	0.54	—	96126	11548	71	128	157	0	0	logfile
✔	3J5R	5777	2022-12-13	2013-10-28	4.2	4.88	—	7.2	0.011	1.57	0.0	0.09	20.25	0.01	1.204	84.60	28.64	7.8	91.0	1.2	-0.91	0.58	0.45	—	7.3	0.003	0.89	0.0	0.04	13.20	0.00	2.187	19.15	0.00	6.6	93.0	0.4	0.22	1.79	0.67	0.54	—	17564	2324	4	0	44	0	0	logfile
✔	8DGJ	27427	2022-12-13	2022-06-23	4.02	4.32	4.05	4.1	0.007	1.24	2.0	0.06	14.25	0.01	2.213	11.18	0.13	7.4	92.3	0.3	-2.71	0.69	0.56	—	4.1	0.003	0.70	0.0	0.04	13.95	0.00	2.061	18.05	0.00	6.6	93.3	0.1	-0.52	0.55	0.68	0.54	—	13574	1689	2	0	0	0	0	logfile
✔	8BC1	15959	2022-12-12	2022-10-14	2.93	3.48	2.73	3.5	0.002	0.46	0.0	0.04	10.38	0.00	2.265	7.96	3.43	2.9	97.1	0.0	1.53	0.38	0.52	1.52	3.5	0.004	0.80	0.0	0.05	15.62	0.01	2.021	15.81	1.50	3.8	96.2	0.0	0.65	1.05	0.39	0.54	1.25	8684	1054	4	0	6	0	0	logfile
✔	7NSU	12577	2022-12-19	2021-03-08	4.7	3.48	4.74	4.1	0.003	0.70	0.0	0.05	14.51	0.00	1.833	11.06	3.66	4.9	95.0	0.1	-1.84	0.58	0.49	—	2.2	0.004	0.68	0.0	0.04	12.98	0.00	1.754	19.04	0.16	6.5	93.5	0.0	-1.18	2.33	0.60	0.54	—	36070	2410	6	0	0	0	17527	logfile
✔	6oFJ	20047	2022-12-12	2019-03-30	4.5	5.60	3.27	7.8	0.007	0.96	0.0	0.05	15.74	0.01	2.135	3.88	0.00	7.1	92.9	0.0	-4.36	0.48	0.33	—	7.8	0.002	0.60	0.0	0.04	14.08	0.00	1.999	8.93	0.00	10.1	89.9	0.0	-2.15	1.20	0.56	0.54	—	10310	650	2	0	0	0	5142	logfile
✔	3LoS	5137	2022-12-12	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	87.93	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.004	1.15	0.0	0.05	15.79	0.01	2.143	26.45	0.01	19.2	76.6	4.1	-4.17	1.41	0.61	0.54	—	63712	8512	16	0	0	0	0	logfile
✔	7WoG	32651	2022-12-11	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.0	0.003	0.73	0.0	0.04	10.85	0.01	2.047	20.44	0.00	13.8	86.2	0.0	-2.46	1.00	0.54	0.54	—	3362	433	3	0	0	0	0	logfile
✔	6RAX	4786	2022-12-20	2019-04-08	3.99	4.07	3.97	4.1	0.011	1.46	27.0	0.13	18.03	0.01	1.308	24.00	6.70	19.2	80.3	0.5	-5.61	0.55	0.58	0.25	4.0	0.003	0.82	0.0	0.04	18.26	0.00	2.110	14.46	0.56	10.5	89.5	0.0	-2.93	1.49	0.56	0.54	0.32	40970	5062	19	29	6	0	0	logfile

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