Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BW8	30230	2021-12-01	2020-04-14	3.8	4.16	3.79	4.4	0.009	1.38	0.0	0.07	17.39	0.01	1.974	49.64	0.00	22.3	77.7	0.0	-5.01	0.70	0.66	0.41	4.4	0.003	0.93	0.0	0.05	18.20	0.01	2.199	20.56	0.74	12.0	88.0	0.0	-3.10	1.56	0.68	0.63	0.49	6021	737	3	0	0	0	0	logfile
✔	7ARK	11885	2021-12-01	2020-10-25	4.1	4.15	—	4.1	0.003	0.77	0.0	0.05	13.71	0.00	2.191	3.82	0.10	5.5	94.5	0.0	-5.58	0.59	0.54	—	4.1	0.003	0.72	0.0	0.04	13.54	0.00	1.991	12.07	0.00	5.2	94.8	0.0	-2.74	1.34	0.63	0.63	—	9570	1243	6	0	4	0	0	logfile
✔	7FG2	31574	2021-12-01	2021-07-25	4.4	3.87	—	3.9	0.007	1.13	0.0	0.05	14.43	0.01	2.053	32.59	0.19	17.8	81.7	0.4	-3.95	0.38	0.65	—	3.9	0.003	0.77	0.0	0.05	14.71	0.00	2.116	18.54	0.00	13.7	86.0	0.3	-2.76	0.71	0.37	0.63	—	9342	1202	2	0	0	0	0	logfile
✔	5XLP	6731	2021-12-01	2017-05-11	4.2	4.23	—	4.2	0.009	1.36	0.0	0.06	14.75	0.01	2.194	12.48	0.57	18.2	81.4	0.5	-5.53	0.62	0.58	—	4.2	0.013	1.39	0.0	0.05	16.16	0.01	1.225	26.13	0.11	16.4	83.3	0.3	-4.10	2.32	0.65	0.63	—	9952	1343	6	24	0	0	0	logfile
✔	7F1Q	31422	2021-12-01	2021-06-09	2.9	3.05	—	3.1	0.002	0.55	0.0	0.04	12.03	0.00	2.264	10.21	0.27	2.6	97.4	0.0	-1.52	0.58	0.72	2.25	3.1	0.007	0.91	0.0	0.04	15.76	0.00	2.115	13.00	2.71	3.2	96.8	0.0	0.64	0.68	0.56	0.63	3.52	7123	938	4	0	0	0	0	logfile
✔	6TNF	10531	2021-12-01	2019-12-07	3.8	2.90	3.67	2.7	0.034	1.65	0.0	0.27	15.46	0.01	2.236	8.40	0.00	17.8	81.5	0.7	-5.32	0.60	0.56	—	2.7	0.003	0.83	0.0	0.06	12.92	0.00	2.186	8.27	0.00	15.8	84.2	0.0	-2.26	0.51	0.65	0.63	—	9559	2206	5	0	66	0	0	logfile
✔	6WU0	21901	2021-12-01	2020-05-04	3.59	3.92	—	3.9	0.003	0.65	0.0	0.04	13.43	0.00	2.211	10.57	0.00	6.0	94.0	0.0	-1.89	0.56	0.63	0.78	3.9	0.015	1.49	1.0	0.04	16.06	0.01	2.103	16.04	1.07	7.4	92.6	0.0	-0.20	0.51	0.55	0.64	0.48	6340	854	1	0	0	0	0	logfile
✔	6YW7	10960	2021-12-01	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	2.17	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	1.00	0.0	0.02	5.16	0.00	2.215	9.65	0.00	10.5	89.4	0.2	-3.99	6.44	0.84	0.64	—	5426	1788	9	0	2	0	0	logfile
✔	7K8B	22725	2021-12-01	2020-09-26	2.94	2.86	—	3.1	0.005	0.83	2.0	0.05	14.13	0.01	2.214	14.30	0.68	5.5	94.5	0.0	-0.97	0.41	0.61	1.17	3.1	0.003	0.79	0.0	0.04	16.91	0.01	2.147	15.10	2.36	5.4	94.6	0.0	-0.14	1.19	0.42	0.64	0.64	5543	726	1	0	0	0	0	logfile
✔	7RTV	24690	2021-12-01	2021-08-15	3.96	4.06	—	4.1	0.003	0.68	0.0	0.04	16.49	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.87	0.0	0.05	18.50	0.00	2.197	15.60	0.32	3.0	97.0	0.0	2.57	0.49	0.42	0.64	0.60	2881	366	3	0	6	0	0	logfile
✔	7CAH	30331	2021-12-01	2020-06-08	3.9	4.13	—	4.0	0.005	0.92	0.0	0.05	13.68	0.01	2.137	18.79	0.00	19.9	79.8	0.3	-5.76	0.68	0.64	2.37	4.0	0.003	0.76	0.0	0.05	14.99	0.01	2.233	15.81	0.74	12.6	87.4	0.0	-3.53	0.55	0.69	0.64	2.17	2889	404	3	0	0	0	0	logfile
✔	6XTB	10618	2021-12-01	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.004	1.06	0.0	0.05	7.90	0.00	2.205	9.62	0.00	22.1	77.9	0.0	-5.53	2.43	0.34	0.64	—	1161	235	1	0	0	0	0	logfile
✔	6Xi8	22191	2021-12-01	2020-06-19	3.64	2.63	3.78	2.0	0.010	1.69	4.0	0.11	15.71	0.01	1.333	6.49	0.77	9.0	91.0	0.0	-4.62	0.66	0.54	0.71	2.0	0.004	1.19	0.0	0.05	17.71	0.01	2.174	18.85	0.77	8.5	91.5	0.0	-2.29	1.24	0.68	0.64	0.95	5022	636	4	0	2	0	0	logfile
✔	6X93	22098	2021-12-01	2020-06-02	3.5	3.96	—	3.7	0.007	1.13	0.0	0.06	13.58	0.01	2.173	17.66	0.42	5.0	95.0	0.0	-3.25	0.70	0.61	1.85	3.7	0.012	1.54	1.0	0.05	15.49	0.00	1.980	18.82	0.21	7.5	92.5	0.0	-2.56	1.66	0.73	0.64	1.87	6846	1042	6	0	0	0	0	logfile
✔	6oG2	20050	2021-12-01	2019-04-01	4.1	4.11	—	4.0	0.006	1.11	0.0	0.06	17.54	0.01	2.211	12.25	0.43	12.3	87.5	0.2	-5.21	0.50	0.50	—	4.0	0.004	0.85	0.0	0.05	15.08	0.00	2.121	20.00	0.00	10.3	89.7	0.0	-2.91	1.99	0.57	0.65	—	8847	1106	4	0	3	0	0	logfile
✔	7BW7	30229	2021-12-01	2020-04-13	4.1	4.55	4.28	4.4	0.008	1.06	0.0	0.06	16.20	0.01	2.050	40.07	0.00	23.4	76.6	0.0	-5.62	0.73	0.68	—	4.4	0.004	0.82	0.0	0.05	15.22	0.00	2.112	22.19	0.10	15.8	84.2	0.0	-3.98	0.72	0.71	0.65	—	8824	1091	3	0	0	0	0	logfile
✔	7MLZ	23914	2021-12-01	2021-04-29	3.71	4.27	3.83	3.9	0.004	0.78	0.0	0.05	12.84	0.01	2.150	18.02	0.00	17.4	82.5	0.2	-4.08	0.80	0.62	1.39	3.9	0.004	0.78	0.0	0.05	15.40	0.01	2.101	18.34	0.37	17.9	82.0	0.2	-4.24	0.52	0.82	0.65	1.02	4864	624	4	0	5	0	0	logfile
✔	7F8W	31494	2021-12-01	2021-07-02	3.1	2.94	—	3.2	0.005	1.05	0.0	0.06	14.10	0.01	2.273	8.70	0.00	4.6	95.4	0.0	-1.99	0.54	0.58	1.20	3.1	0.005	0.80	0.0	0.04	16.21	0.01	2.040	18.76	0.11	5.5	94.5	0.0	-0.97	1.21	0.58	0.65	0.61	8486	1087	6	0	0	0	0	logfile
✔	6BGi	7095	2021-12-01	2017-10-28	3.8	4.07	3.58	4.0	0.008	1.00	0.0	0.05	8.91	0.01	2.002	48.38	0.00	16.1	83.9	0.0	-5.29	0.47	0.64	0.86	4.0	0.003	0.86	0.0	0.04	14.87	0.00	2.139	16.06	0.52	11.2	88.8	0.0	-1.88	1.11	0.48	0.65	1.64	7774	1020	4	0	4	0	0	logfile
✔	6P48	20246	2021-12-01	2019-05-26	3.2	3.42	2.97	3.5	0.011	1.56	2.0	0.09	16.57	0.01	2.014	22.33	3.53	6.5	92.6	0.9	-6.05	0.59	0.65	1.57	3.5	0.008	1.10	0.0	0.04	17.37	0.01	1.787	20.32	0.28	9.0	90.8	0.2	-2.15	0.76	0.61	0.66	1.58	9936	1208	4	0	2	0	0	logfile

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