Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CXM	27060	2023-04-20	2022-05-21	3.21	3.69	3.21	3.6	0.003	0.50	0.0	0.03	14.84	0.00	2.093	8.38	0.06	4.1	95.9	0.0	3.68	0.56	0.87	1.34	3.5	0.003	0.53	0.0	0.03	16.26	0.00	2.108	6.36	0.15	3.9	96.1	0.0	4.62	1.14	0.58	0.89	1.41	109560	14685	55	0	0	0	0	logfile
✔	7R6K	24280	2023-04-25	2021-06-22	3.17	3.23	3.15	3.2	0.003	0.52	0.0	0.04	14.70	0.00	2.200	8.68	0.00	4.3	95.7	0.0	0.58	0.73	0.79	2.37	3.2	0.002	0.50	0.0	0.03	15.88	0.00	2.182	7.38	0.16	4.5	95.5	0.0	1.36	0.41	0.73	0.81	2.16	20543	2153	16	152	0	0	0	logfile
✔	6WYV	21969	2023-04-27	2020-05-13	2.75	3.18	—	3.0	0.006	0.51	1.0	0.02	13.15	0.03	1.925	3.89	1.57	7.1	92.8	0.1	-4.66	0.70	0.84	3.35	3.0	0.004	0.69	1.0	0.03	15.47	0.01	2.001	11.08	4.98	7.6	92.3	0.1	-1.76	1.51	0.71	0.88	3.05	72194	971	9	3015	1	0	0	logfile
✔	6PC6	20297	2023-04-27	2019-06-16	2.5	3.08	—	2.9	0.008	0.56	0.0	0.02	13.08	0.03	1.930	2.91	2.11	6.3	93.7	0.0	-3.58	0.73	0.88	4.50	2.9	0.005	0.67	0.0	0.03	14.86	0.01	1.949	7.94	3.68	6.6	93.2	0.2	-0.81	0.91	0.74	0.90	4.30	72127	963	8	3015	1	0	0	logfile
✔	7S38	24819	2023-04-23	2021-09-04	3.3	3.17	3.25	3.1	0.008	0.99	0.0	0.05	15.52	0.01	2.233	2.62	0.08	4.2	95.8	0.0	-1.38	0.86	0.83	3.03	3.1	0.002	0.52	0.0	0.03	17.38	0.00	2.095	8.30	0.00	2.5	97.5	0.0	0.46	1.31	0.88	0.87	2.70	13987	1353	4	138	1	0	0	logfile
✔	6DWB	8924	2023-04-24	2018-06-26	3.3	3.43	—	3.4	0.007	0.66	0.0	0.04	7.21	0.01	2.161	2.34	0.00	5.1	94.9	0.0	-6.22	0.61	0.75	2.51	3.4	0.003	0.49	0.0	0.03	13.59	0.00	2.142	4.35	0.10	3.6	96.4	0.0	4.58	1.15	0.75	0.90	2.83	18360	2340	30	0	0	0	0	logfile
✔	7WLR	32591	2023-04-22	2022-01-13	3.54	3.36	—	3.5	0.006	0.88	0.0	0.05	29.42	0.01	2.232	3.15	0.00	1.8	98.2	0.0	1.65	0.69	0.75	2.27	3.5	0.004	0.56	0.0	0.03	28.58	0.00	2.194	6.62	0.16	2.4	97.6	0.0	2.98	1.22	0.78	0.83	2.36	11922	754	10	290	0	0	0	logfile
✔	6PCR	20305	2023-04-27	2019-06-18	2.5	3.04	—	2.9	0.006	0.47	0.0	0.03	13.21	0.03	1.808	2.72	2.36	5.2	94.6	0.2	-3.36	0.72	0.89	4.33	2.9	0.005	0.69	0.0	0.03	14.91	0.01	1.905	6.82	2.36	6.1	93.9	0.0	-0.53	1.23	0.72	0.91	4.47	72166	967	8	3015	1	0	0	logfile
✔	7XZY	33534	2023-04-22	2022-06-03	3.97	4.47	3.88	3.9	0.004	0.69	0.0	0.04	28.02	0.00	2.062	14.33	0.16	1.9	98.1	0.0	1.04	0.83	0.69	0.95	4.0	0.004	0.70	0.0	0.03	28.73	0.00	2.040	9.85	0.63	3.6	96.4	0.0	1.77	2.26	0.92	0.88	0.97	12821	762	10	330	0	0	0	logfile
✔	7ZF1	14694	2023-04-21	2022-03-31	4.14	4.39	4.33	4.3	0.005	0.81	0.0	0.04	16.56	0.01	1.299	3.24	0.00	2.7	97.3	0.0	0.76	0.78	0.73	—	4.2	0.003	0.55	0.0	0.03	16.86	0.00	1.988	10.78	0.00	3.2	96.8	0.0	1.54	1.60	0.80	0.76	—	38889	2297	5	54	0	0	19431	logfile
✔	6S01	10069	2023-04-22	2019-06-13	3.2	3.27	3.17	3.2	0.008	0.72	0.0	0.04	26.34	0.01	2.284	3.83	1.82	3.9	96.1	0.0	-5.85	0.74	0.77	3.18	3.2	0.004	0.60	0.0	0.03	27.91	0.00	2.124	8.90	0.70	3.4	96.6	0.0	0.78	0.51	0.82	0.85	2.78	12959	853	11	300	0	0	0	logfile
✔	7QA8	13880	2023-04-20	2021-11-16	2.7	2.20	2.66	2.7	0.009	1.11	0.0	0.06	14.61	0.01	2.323	1.73	0.75	3.3	96.7	0.0	-2.98	0.59	0.79	2.15	2.5	0.002	0.61	0.0	0.03	16.34	0.00	2.228	4.64	3.55	3.3	96.7	0.0	2.93	0.41	0.59	0.80	2.30	6111	622	11	0	38	70	0	logfile
✔	7RZR	24775	2023-04-19	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.002	0.36	0.0	0.03	15.29	0.00	2.294	4.44	0.71	0.0	100.0	0.0	6.53	0.31	0.81	0.83	3.42	2448	324	6	0	0	0	0	logfile
✔	7WAY	32389	2023-04-22	2021-12-15	2.9	3.11	—	2.9	0.004	0.54	0.0	0.04	16.63	0.00	2.172	5.59	0.00	2.8	97.2	0.0	1.31	0.87	0.85	2.73	2.9	0.003	0.55	0.0	0.03	17.63	0.00	2.212	5.59	1.31	2.1	97.9	0.0	1.76	0.33	0.89	0.88	2.37	11453	960	4	175	0	0	0	logfile
✔	7RZT	24777	2023-04-19	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.003	0.32	0.0	0.03	15.52	0.00	2.337	5.44	0.35	0.0	100.0	0.0	6.26	0.24	0.80	0.83	2.93	2451	324	6	0	0	0	0	logfile
✔	7RZQ	24774	2023-04-19	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.31	0.0	0.03	15.07	0.00	2.343	5.71	0.00	0.0	100.0	0.0	5.84	0.30	0.82	0.82	2.01	2421	322	6	0	0	0	0	logfile
✔	7TAN	25777	2023-04-22	2021-12-21	3.0	2.95	—	3.1	0.003	0.47	0.0	0.03	27.32	0.00	2.287	3.25	0.00	2.8	97.2	0.0	2.18	0.82	0.85	2.22	3.1	0.004	0.51	0.0	0.03	27.86	0.00	2.221	2.61	0.78	2.0	98.0	0.0	2.33	0.33	0.83	0.87	2.17	12119	768	12	294	0	0	0	logfile
✔	7EG6	31106	2023-04-22	2021-03-24	3.1	3.55	—	3.2	0.007	0.73	0.0	0.04	27.64	0.01	2.328	1.56	0.00	0.9	99.1	0.0	-1.78	0.88	0.86	3.75	3.2	0.004	0.55	0.0	0.03	28.24	0.00	2.190	5.69	0.16	1.7	98.3	0.0	3.31	1.16	0.89	0.88	2.59	12118	779	11	292	0	0	0	logfile
✔	7X57	33010	2023-04-21	2022-03-04	3.63	3.95	—	3.8	0.003	0.63	0.0	0.03	28.98	0.01	2.286	9.90	0.20	1.4	98.6	0.0	0.39	0.82	0.76	1.31	3.8	0.003	0.64	0.0	0.03	29.85	0.00	2.269	13.03	0.99	2.6	97.4	0.0	2.84	0.69	0.83	0.79	1.19	9767	595	10	242	0	0	0	logfile
✔	7WiJ	32531	2023-04-22	2022-01-03	3.17	3.08	3.01	3.2	0.002	0.50	0.0	0.03	14.49	0.00	2.243	4.52	0.00	0.4	99.6	0.0	2.75	0.70	0.85	1.82	3.2	0.003	0.53	0.0	0.03	15.57	0.00	2.262	4.68	0.00	0.8	99.2	0.0	3.40	0.26	0.71	0.87	1.79	12396	1602	6	0	0	0	0	logfile

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