Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oSK	20184	2021-08-14	2019-05-01	3.6	3.41	—	3.3	0.008	0.85	1.0	0.05	14.66	0.02	1.837	5.18	0.51	5.2	94.6	0.1	-4.40	0.78	0.85	2.75	3.3	0.005	0.65	1.0	0.03	15.51	0.01	1.785	15.18	0.47	4.1	95.8	0.0	-1.10	1.75	0.77	0.84	1.57	146659	5969	65	4642	309	0	0	logfile
✔	6oT5	20194	2021-08-10	2019-05-02	3.6	3.71	3.54	3.7	0.009	0.85	0.0	0.05	9.27	0.00	1.623	6.48	0.00	3.0	97.0	0.0	-2.73	0.65	0.76	3.18	3.7	0.002	0.50	0.0	0.03	13.68	0.00	2.002	5.86	0.28	3.9	96.1	0.0	0.74	0.86	0.68	0.78	2.60	33420	2444	8	0	52	0	15620	logfile
✔	5LZF	4126	2021-08-15	2016-09-29	4.6	4.86	4.78	4.6	0.008	1.17	5.0	0.08	14.20	0.02	2.141	4.69	0.02	7.1	90.8	2.1	-2.74	0.83	0.85	—	4.6	0.005	0.78	2.0	0.03	15.55	0.01	1.508	29.56	0.06	7.8	91.6	0.5	-1.44	2.46	0.84	0.86	—	148005	5824	58	4779	2	0	0	logfile
✔	5LZD	4124	2021-08-17	2016-09-29	3.4	3.48	3.51	3.4	0.009	1.23	9.0	0.08	13.74	0.02	2.023	6.14	0.71	7.6	91.0	1.4	-3.90	0.75	0.86	2.27	3.4	0.004	0.69	1.0	0.03	14.85	0.01	1.929	13.11	0.96	7.7	92.1	0.3	-1.78	0.60	0.75	0.86	1.50	153177	6439	68	4785	152	2	0	logfile
✔	6MRT	9212	2021-08-08	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.49	0.0	0.03	15.39	0.00	2.218	3.12	1.36	0.4	99.6	0.0	5.29	3.08	0.73	0.86	2.53	26868	3420	12	0	0	0	0	logfile
✔	6MRW	9214	2021-08-09	2018-10-15	4.3	4.76	—	4.3	0.006	0.98	0.0	0.04	10.35	0.01	2.080	4.39	0.41	2.1	97.9	0.0	-0.19	0.82	0.84	—	4.3	0.010	0.88	2.0	0.03	12.02	0.00	2.102	6.81	0.03	2.1	97.9	0.0	6.08	0.67	0.83	0.86	—	31346	3990	14	0	0	0	0	logfile
✔	6K1P	9719	2021-08-08	2019-05-10	3.87	4.09	—	4.0	0.010	1.02	0.0	0.06	24.72	0.01	1.838	5.23	0.10	8.5	90.9	0.6	-4.45	0.75	0.82	2.45	4.0	0.003	0.60	0.0	0.03	25.53	0.00	1.701	8.37	0.10	5.8	94.2	0.0	0.05	2.48	0.75	0.82	0.91	15841	1230	11	292	3	0	0	logfile
✔	6PXM	20521	2021-08-10	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.61	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	2.3	0.002	0.43	0.0	0.03	17.65	0.00	2.202	3.26	0.09	1.8	98.2	0.0	5.35	1.49	0.78	0.89	3.87	32736	4080	24	0	0	0	0	logfile
✔	5KPV	8280	2021-08-18	2016-07-05	4.1	5.32	4.22	4.1	0.008	1.18	5.0	0.09	14.56	0.01	2.074	34.14	0.66	13.5	80.3	6.2	-4.67	0.90	0.78	—	4.1	0.003	0.65	0.0	0.03	15.70	0.00	2.007	26.07	0.00	10.0	89.1	0.9	-1.72	1.81	0.94	0.89	—	154603	6623	59	4812	0	0	0	logfile
✔	6D9J	7836	2021-08-21	2018-04-30	3.2	9.32	4.90	4.8	0.003	0.79	0.0	0.05	15.21	0.01	0.444	5.63	0.03	4.7	95.3	0.0	-4.02	0.93	0.80	0.18	4.8	0.003	0.65	0.0	0.03	18.14	0.00	1.971	25.66	0.28	6.2	93.8	0.0	-1.32	1.97	0.94	0.86	0.05	227188	12745	90	5838	6	0	0	logfile
✔	6N8L	0371	2021-08-10	2018-11-29	3.6	3.79	—	3.7	0.007	0.93	0.0	0.05	15.30	0.01	2.200	3.55	0.64	7.3	92.2	0.5	-4.50	0.80	0.87	3.56	3.7	0.003	0.60	1.0	0.03	16.13	0.00	2.062	9.07	0.68	7.9	92.0	0.1	-1.28	1.28	0.80	0.87	2.35	129926	6884	48	3479	210	0	0	logfile
✔	6N8K	0370	2021-08-11	2018-11-29	3.6	3.80	—	3.7	0.006	0.91	0.0	0.05	15.37	0.01	1.873	3.84	0.51	6.6	93.0	0.4	-4.28	0.79	0.87	2.97	3.7	0.004	0.63	0.0	0.03	16.32	0.00	1.986	10.18	0.54	7.8	92.1	0.1	-0.91	0.70	0.80	0.87	1.88	132821	7231	49	3479	212	0	0	logfile
✔	6VPS	21316	2021-08-07	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.89	6.11	2.7	0.002	0.48	0.0	0.03	19.69	0.00	2.391	3.50	1.63	6.9	93.1	0.0	-3.67	1.20	0.47	0.87	6.71	2736	279	9	0	0	0	0	logfile
✔	6VQi	21351	2021-08-07	2020-02-05	4.3	4.89	—	4.2	0.005	1.14	0.0	0.05	3.90	0.01	2.327	1.95	0.00	1.3	98.2	0.5	2.16	0.56	0.73	—	3.8	0.003	0.58	0.0	0.03	4.23	0.00	2.229	3.52	0.00	5.7	94.2	0.1	2.19	1.39	0.57	0.74	—	5278	1062	8	0	0	0	0	logfile
✔	6JYL	9718	2021-08-08	2019-04-26	3.37	4.00	—	3.4	0.008	0.83	0.0	0.05	24.45	0.01	2.086	2.68	0.28	4.8	95.0	0.2	-3.67	0.90	0.87	2.92	3.5	0.003	0.59	0.0	0.03	24.64	0.00	1.661	7.71	0.09	4.2	95.8	0.0	0.91	0.58	0.90	0.88	1.85	16136	1265	11	292	3	0	0	logfile
✔	7JoA	22409	2021-08-08	2020-08-06	3.3	3.05	—	3.2	0.009	0.78	0.0	0.04	26.00	0.01	2.206	6.07	0.00	6.5	93.5	0.0	-0.33	0.79	0.82	1.49	3.2	0.003	0.56	0.0	0.03	26.30	0.00	2.272	6.25	0.10	1.4	98.6	0.0	1.86	4.79	0.82	0.86	1.51	14994	1125	11	290	1	0	0	logfile
✔	6Z6K	11097	2021-08-12	2020-05-28	3.4	3.44	—	3.4	0.010	0.93	0.0	0.05	16.58	0.01	1.650	14.43	0.69	11.6	87.9	0.5	-3.91	0.79	0.84	2.41	3.4	0.003	0.60	0.0	0.03	16.31	0.01	1.419	11.64	0.57	8.2	91.6	0.2	-1.03	1.20	0.78	0.84	1.86	196360	11052	88	5105	9	0	0	logfile
✔	6T93	10408	2021-08-08	2019-10-25	3.49	4.10	—	3.7	0.014	1.15	0.0	0.06	27.23	0.01	2.435	0.73	0.00	0.3	99.7	0.0	0.78	0.87	0.85	2.94	3.7	0.004	0.67	0.0	0.03	27.96	0.00	2.163	12.72	0.79	2.3	97.7	0.0	2.54	2.24	0.87	0.87	1.71	12199	758	10	302	0	0	0	logfile
✔	5o60	3750	2021-08-12	2017-06-02	3.18	3.26	—	3.2	0.008	1.12	0.0	0.05	17.44	0.01	1.463	7.01	10.34	4.2	95.6	0.2	-3.02	0.76	0.89	2.25	3.2	0.006	0.67	0.0	0.03	16.70	0.00	1.729	11.01	0.58	3.8	96.2	0.1	-0.37	0.64	0.75	0.87	1.69	98153	3682	47	3240	412	0	0	logfile
✔	4UY8	2773	2021-08-12	2014-08-29	3.8	4.07	—	4.1	0.010	1.50	8.0	0.07	15.49	0.01	0.879	11.91	11.16	16.3	76.9	6.8	-5.04	0.53	0.64	0.36	4.0	0.005	0.71	0.0	0.03	16.91	0.01	1.598	62.65	0.36	16.0	81.6	2.4	-3.30	1.54	0.58	0.80	1.20	92995	3468	47	3049	144	439	8	logfile

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