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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6L3U | 0826 | 2022-12-14 | 2019-10-15 | 2.53 | 2.59 | 2.48 | 2.6 | 0.010 | 0.96 | 0.0 | 0.05 | 16.88 | 0.01 | 2.206 | 0.45 | 3.01 | 1.9 | 98.1 | 0.0 | -2.86 | 0.64 | 0.84 | 4.02 | 2.6 | 0.002 | 0.50 | 0.0 | 0.03 | 16.80 | 0.00 | 2.116 | 1.75 | 1.41 | 0.5 | 99.5 | 0.0 | 2.85 | 2.33 | 0.63 | 0.86 | 2.81 | 19698 | 1206 | 18 | 0 | 12 | 174 | 9588 | logfile |
✔ | 6YBW | 10775 | 2022-12-22 | 2020-03-18 | 3.1 | 3.30 | 2.98 | 3.2 | 0.008 | 1.03 | 0.0 | 0.05 | 16.82 | 0.02 | 2.097 | 4.24 | 3.04 | 3.7 | 96.3 | 0.0 | -2.06 | 0.74 | 0.87 | 3.02 | 3.2 | 0.003 | 0.64 | 0.0 | 0.03 | 16.68 | 0.01 | 1.944 | 8.52 | 0.44 | 2.8 | 97.2 | 0.0 | 0.02 | 1.13 | 0.74 | 0.88 | 2.95 | 52840 | 3374 | 30 | 1248 | 61 | 0 | 0 | logfile |
✔ | 6L3V | 0827 | 2022-12-14 | 2019-10-15 | 2.63 | 2.90 | 2.72 | 2.9 | 0.009 | 0.92 | 0.0 | 0.04 | 17.16 | 0.01 | 2.218 | 1.00 | 5.45 | 0.5 | 99.5 | 0.0 | -5.00 | 0.57 | 0.85 | 3.54 | 2.9 | 0.002 | 0.58 | 0.0 | 0.03 | 16.60 | 0.00 | 2.191 | 1.81 | 1.72 | 0.5 | 99.5 | 0.0 | 2.35 | 3.59 | 0.58 | 0.87 | 2.87 | 19416 | 1206 | 12 | 0 | 6 | 0 | 9528 | logfile |
✔ | 7BV8 | 30215 | 2022-12-16 | 2020-04-09 | 3.14 | 3.53 | — | 3.5 | 0.007 | 0.75 | 0.0 | 0.04 | 15.53 | 0.01 | 2.007 | 9.22 | 0.29 | 8.3 | 91.5 | 0.3 | -4.23 | 0.72 | 0.82 | 3.09 | 3.5 | 0.003 | 0.55 | 0.0 | 0.03 | 15.28 | 0.00 | 2.063 | 8.11 | 0.43 | 5.4 | 94.5 | 0.1 | -1.41 | 1.13 | 0.72 | 0.84 | 2.45 | 91505 | 3436 | 32 | 3017 | 0 | 0 | 0 | logfile |
✔ | 6RJU | 4906 | 2022-12-11 | 2019-04-29 | 3.2 | 4.49 | 2.14 | 10.0 | 0.007 | 0.93 | 0.0 | 0.05 | 15.36 | 0.00 | 2.423 | 4.52 | 0.00 | 11.6 | 88.4 | 0.0 | -7.10 | 0.22 | -0.01 | -0.80 | 10.0 | 0.003 | 0.66 | 0.0 | 0.03 | 16.23 | 0.00 | 2.422 | 6.03 | 0.00 | 3.9 | 96.1 | 0.0 | -0.32 | 1.40 | 0.27 | 0.03 | -0.67 | 1992 | 131 | 1 | 0 | 0 | 0 | 997 | logfile |
✔ | 6PC8 | 20299 | 2022-12-14 | 2019-06-16 | 2.9 | 3.26 | — | 3.1 | 0.006 | 0.48 | 0.0 | 0.03 | 12.75 | 0.02 | 1.931 | 3.26 | 2.62 | 7.2 | 92.7 | 0.1 | -4.11 | 0.71 | 0.86 | 3.45 | 3.1 | 0.004 | 0.62 | 0.0 | 0.03 | 14.59 | 0.01 | 2.115 | 8.86 | 4.32 | 8.2 | 91.7 | 0.1 | -1.66 | 0.45 | 0.72 | 0.88 | 3.21 | 72169 | 967 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 7CRR | 30457 | 2022-12-15 | 2020-08-14 | 3.48 | 3.61 | — | 3.5 | 0.007 | 0.75 | 0.0 | 0.04 | 27.67 | 0.00 | 2.037 | 12.56 | 1.56 | 10.2 | 89.8 | 0.0 | -5.14 | 0.74 | 0.82 | 2.82 | 3.5 | 0.004 | 0.58 | 0.0 | 0.03 | 27.91 | 0.00 | 2.210 | 8.57 | 0.36 | 6.4 | 93.6 | 0.0 | -1.62 | 0.42 | 0.78 | 0.87 | 2.41 | 14839 | 1002 | 11 | 336 | 4 | 0 | 0 | logfile |
✔ | 6K43 | 9913 | 2022-12-16 | 2019-05-23 | 3.7 | 4.12 | — | 4.0 | 0.007 | 0.72 | 0.0 | 0.04 | 15.85 | 0.00 | 1.266 | 17.54 | 0.12 | 6.9 | 93.1 | 0.0 | -2.02 | 0.75 | 0.82 | 1.49 | 4.1 | 0.004 | 0.70 | 0.0 | 0.03 | 18.39 | 0.00 | 2.138 | 6.60 | 0.54 | 3.9 | 96.1 | 0.0 | 3.92 | 0.81 | 0.77 | 0.82 | 1.49 | 31808 | 3840 | 48 | 0 | 36 | 0 | 0 | logfile |
✔ | 6K3o | 9910 | 2022-12-16 | 2019-05-21 | 3.4 | 3.86 | — | 3.8 | 0.003 | 0.56 | 0.0 | 0.03 | 14.46 | 0.00 | 1.077 | 16.09 | 0.00 | 3.8 | 96.2 | 0.0 | -1.52 | 0.79 | 0.82 | 3.15 | 3.8 | 0.004 | 0.73 | 0.0 | 0.03 | 17.05 | 0.00 | 1.627 | 5.96 | 0.75 | 2.1 | 97.9 | 0.0 | 3.83 | 0.50 | 0.76 | 0.81 | 2.46 | 31508 | 3790 | 48 | 0 | 36 | 0 | 0 | logfile |
✔ | 6MRU | 9213 | 2022-12-12 | 2018-10-15 | 3.2 | 3.31 | — | 3.3 | 0.005 | 0.73 | 0.0 | 0.04 | 10.16 | 0.01 | 2.297 | 2.27 | 0.82 | 1.4 | 98.6 | 0.0 | -1.59 | 0.72 | 0.83 | 3.34 | 3.3 | 0.002 | 0.46 | 0.0 | 0.03 | 13.26 | 0.00 | 2.192 | 3.53 | 0.00 | 0.6 | 99.4 | 0.0 | 5.66 | 3.08 | 0.75 | 0.86 | 1.81 | 29107 | 3705 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KDT | 22829 | 2022-12-11 | 2020-10-09 | 3.05 | 3.34 | 3.19 | 3.4 | 0.012 | 1.74 | 0.0 | 0.09 | 14.56 | 0.02 | 2.562 | 0.12 | 0.47 | 1.4 | 98.6 | 0.0 | -1.64 | 0.70 | 0.77 | 2.95 | 3.3 | 0.004 | 0.55 | 0.0 | 0.03 | 16.91 | 0.00 | 2.224 | 6.33 | 0.23 | 1.8 | 98.2 | 0.0 | 2.64 | 2.11 | 0.68 | 0.80 | 2.66 | 8064 | 505 | 2 | 0 | 0 | 0 | 4042 | logfile |
✔ | 6MRT | 9212 | 2022-12-11 | 2018-10-15 | 2.8 | 2.93 | — | 2.9 | 0.008 | 0.90 | 0.0 | 0.05 | 10.67 | 0.01 | 2.260 | 1.61 | 0.82 | 1.1 | 98.9 | 0.0 | -1.27 | 0.70 | 0.84 | 3.77 | 2.9 | 0.003 | 0.46 | 0.0 | 0.03 | 15.43 | 0.00 | 2.226 | 3.14 | 1.29 | 0.5 | 99.5 | 0.0 | 5.71 | 3.08 | 0.73 | 0.86 | 2.07 | 26868 | 3420 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZHX | 11220 | 2022-12-12 | 2020-06-24 | 2.5 | 3.01 | 2.20 | 2.7 | 0.005 | 0.92 | 0.0 | 0.06 | 26.86 | 0.01 | 2.203 | 2.72 | 0.46 | 1.0 | 99.0 | 0.0 | 0.63 | 0.88 | 0.90 | 5.80 | 2.7 | 0.005 | 0.59 | 0.0 | 0.03 | 28.61 | 0.00 | 2.138 | 5.45 | 1.38 | 0.9 | 99.1 | 0.0 | 2.81 | 0.45 | 0.89 | 0.92 | 4.64 | 12313 | 784 | 22 | 290 | 0 | 146 | 0 | logfile |
✔ | 7JGG | 22326 | 2022-12-11 | 2020-07-19 | 4.88 | 8.00 | — | 7.7 | 0.002 | 0.46 | 0.0 | 0.03 | 13.22 | 0.00 | 1.988 | 54.49 | 0.00 | 3.3 | 96.5 | 0.2 | 1.67 | 0.66 | 0.64 | — | 7.6 | 0.003 | 0.54 | 0.0 | 0.03 | 12.79 | 0.00 | 1.898 | 99.07 | 0.00 | 5.9 | 94.1 | 0.0 | 0.89 | 1.75 | 0.67 | 0.71 | — | 4210 | 506 | 1 | 0 | 0 | 0 | 28 | logfile |
✔ | 7KTQ | 23026 | 2022-12-12 | 2020-11-24 | 3.3 | 3.36 | — | 3.3 | 0.008 | 0.84 | 0.0 | 0.05 | 29.36 | 0.01 | 2.201 | 6.42 | 0.16 | 1.5 | 98.5 | 0.0 | -2.43 | 0.77 | 0.85 | 3.63 | 3.3 | 0.004 | 0.56 | 0.0 | 0.03 | 29.41 | 0.00 | 2.137 | 6.29 | 0.16 | 2.3 | 97.7 | 0.0 | 2.92 | 3.06 | 0.79 | 0.88 | 2.56 | 12745 | 752 | 10 | 331 | 0 | 0 | 0 | logfile |
✔ | 6W7N | 21572 | 2022-12-21 | 2020-03-19 | 3.4 | 3.72 | — | 3.6 | 0.002 | 0.46 | 0.0 | 0.03 | 14.05 | 0.00 | 1.907 | 8.15 | 0.08 | 8.2 | 91.5 | 0.3 | -4.03 | 0.78 | 0.78 | 1.44 | 3.6 | 0.005 | 0.64 | 0.0 | 0.03 | 15.40 | 0.00 | 2.136 | 11.29 | 0.69 | 11.6 | 88.1 | 0.3 | -2.05 | 1.23 | 0.81 | 0.83 | 1.49 | 42287 | 1660 | 15 | 1372 | 0 | 0 | 0 | logfile |
✔ | 7BYN | 30246 | 2022-12-13 | 2020-04-23 | 3.3 | 3.57 | — | 3.6 | 0.011 | 1.31 | 0.0 | 0.05 | 20.29 | 0.01 | 1.949 | 24.44 | 16.39 | 2.9 | 96.9 | 0.2 | -0.58 | 0.48 | 0.52 | 0.70 | 3.6 | 0.003 | 0.64 | 0.0 | 0.03 | 17.62 | 0.00 | 2.166 | 8.76 | 0.24 | 1.4 | 98.6 | 0.1 | 2.08 | 1.49 | 0.58 | 0.79 | 0.67 | 16349 | 2000 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 6MRW | 9214 | 2022-12-12 | 2018-10-15 | 4.3 | 4.76 | — | 4.3 | 0.006 | 0.98 | 0.0 | 0.04 | 10.35 | 0.01 | 2.080 | 4.61 | 0.41 | 2.1 | 97.9 | 0.0 | -0.19 | 0.82 | 0.84 | — | 4.3 | 0.002 | 0.48 | 0.0 | 0.03 | 11.74 | 0.00 | 2.080 | 6.81 | 0.00 | 1.8 | 98.2 | 0.0 | 6.05 | 1.27 | 0.83 | 0.86 | — | 31346 | 3990 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XMF | 22257 | 2022-12-11 | 2020-06-30 | 3.1 | 3.28 | — | 3.3 | 0.002 | 0.56 | 0.0 | 0.03 | 16.46 | 0.00 | 2.246 | 8.82 | 0.00 | 6.8 | 93.2 | 0.0 | -1.78 | 0.68 | 0.71 | 2.25 | 3.2 | 0.003 | 0.61 | 0.0 | 0.03 | 17.63 | 0.00 | 2.152 | 15.34 | 0.60 | 9.3 | 90.7 | 0.0 | -0.42 | 0.47 | 0.72 | 0.77 | 2.82 | 7382 | 627 | 3 | 109 | 1 | 0 | 0 | logfile |
✔ | 6WCB | 21605 | 2022-12-12 | 2020-03-30 | 3.17 | 3.17 | — | 3.2 | 0.005 | 0.41 | 0.0 | 0.03 | 13.87 | 0.00 | 2.128 | 2.50 | 1.29 | 0.8 | 99.2 | 0.0 | 0.58 | 0.55 | 0.77 | 2.89 | 3.2 | 0.002 | 0.48 | 0.0 | 0.03 | 15.53 | 0.00 | 2.084 | 3.96 | 0.16 | 1.5 | 98.5 | 0.0 | 3.59 | 1.29 | 0.54 | 0.79 | 2.38 | 11647 | 734 | 6 | 0 | 7 | 40 | 5904 | logfile |