Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RZR	24775	2022-07-02	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.003	0.35	0.0	0.03	15.28	0.00	2.325	4.84	0.35	0.0	100.0	0.0	6.56	0.32	0.81	0.82	3.42	2448	324	6	0	0	0	0	logfile
✔	7RZU	24778	2022-07-02	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.005	0.52	0.0	0.03	15.91	0.00	2.234	8.11	1.75	0.0	100.0	0.0	4.99	0.49	0.80	0.81	1.62	2439	324	6	0	0	0	0	logfile
✔	7T0X	25584	2022-07-08	2021-11-30	4.4	4.45	—	4.3	0.006	0.81	0.0	0.04	13.87	0.00	2.117	45.77	0.00	1.3	98.7	0.0	-0.28	0.74	0.80	—	4.3	0.003	0.71	0.0	0.03	15.32	0.00	2.121	16.17	0.00	1.0	99.0	0.0	1.61	1.56	0.74	0.79	—	147840	17640	840	0	0	0	0	logfile
✔	7RZV	24779	2022-07-02	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.36	0.0	0.03	15.90	0.00	2.235	5.24	0.34	0.0	100.0	0.0	5.91	0.88	0.83	0.82	1.88	2562	339	6	0	0	0	0	logfile
✔	7VBM	31882	2022-07-03	2021-08-31	3.4	2.78	—	3.1	0.005	0.75	1.0	0.04	28.60	0.01	2.221	6.15	0.18	2.0	98.0	0.0	1.47	0.68	0.78	2.79	3.1	0.003	0.55	0.0	0.03	28.92	0.00	2.190	6.74	0.00	1.8	98.2	0.0	2.72	0.29	0.68	0.80	1.94	10475	677	10	252	0	0	0	logfile
✔	7PZD	13727	2022-07-05	2021-10-12	3.6	3.77	—	3.8	0.010	1.24	0.0	0.08	16.79	0.01	2.384	6.88	1.27	5.6	94.4	0.0	-3.73	0.68	0.81	1.20	3.8	0.004	0.68	0.0	0.03	18.61	0.01	2.248	9.34	0.35	5.4	94.6	0.0	1.06	5.63	0.67	0.82	0.73	13644	1656	18	0	0	0	0	logfile
✔	7TRF	26088	2022-07-03	2022-01-28	3.7	4.03	—	3.6	0.005	0.74	0.0	0.05	16.37	0.00	2.206	7.60	0.10	4.6	95.3	0.1	-0.55	0.83	0.81	1.72	3.6	0.003	0.57	0.0	0.03	16.62	0.00	2.166	7.96	0.10	3.4	96.6	0.0	1.18	0.64	0.83	0.83	1.68	13581	1106	5	224	0	0	0	logfile
✔	7TRD	26086	2022-07-03	2022-01-28	3.3	3.39	—	3.4	0.004	0.64	0.0	0.04	16.47	0.00	2.206	7.55	0.12	4.3	95.7	0.0	-0.10	0.79	0.84	2.70	3.3	0.004	0.56	0.0	0.03	16.59	0.00	2.155	5.80	0.12	4.1	95.9	0.0	1.09	0.40	0.80	0.85	2.50	12240	934	3	224	0	0	0	logfile
✔	7ABK	11698	2022-07-02	2020-09-07	3.6	4.10	3.49	3.9	0.004	0.66	0.0	0.04	16.30	0.00	2.315	5.67	1.23	1.5	98.5	0.0	0.91	0.28	0.87	1.10	3.9	0.003	0.67	0.0	0.03	19.97	0.01	2.302	7.56	0.62	2.1	97.9	0.0	5.19	1.33	0.28	0.85	1.55	1574	196	1	0	0	0	0	logfile
✔	7TAN	25777	2022-07-03	2021-12-21	3.0	2.95	—	3.1	0.003	0.47	0.0	0.03	27.32	0.00	2.287	3.25	0.00	2.8	97.2	0.0	2.18	0.82	0.85	2.22	3.1	0.004	0.52	0.0	0.03	27.86	0.00	2.211	2.79	0.47	1.9	98.1	0.0	2.21	0.33	0.84	0.87	1.98	12119	768	12	294	0	0	0	logfile
✔	7WAY	32389	2022-07-03	2021-12-15	2.9	3.11	—	2.9	0.004	0.54	0.0	0.04	16.63	0.00	2.172	5.73	0.00	2.8	97.2	0.0	1.31	0.87	0.85	2.73	2.9	0.002	0.56	0.0	0.03	17.57	0.00	2.210	6.10	0.72	2.1	97.9	0.0	1.76	0.33	0.88	0.86	2.28	11453	960	4	175	0	0	0	logfile
✔	7LJ3	23388	2022-07-05	2021-01-28	2.9	2.92	—	3.4	0.005	0.72	0.0	0.04	17.12	0.00	1.041	27.61	3.30	3.6	96.0	0.4	0.29	0.10	0.23	-0.14	2.9	0.010	0.89	0.0	0.03	19.65	0.01	1.899	9.15	4.21	5.0	94.9	0.2	2.05	1.40	0.22	0.78	1.86	25714	2564	12	225	0	0	0	logfile
✔	7oHU	12909	2022-07-05	2021-05-11	3.7	4.68	3.77	3.4	0.008	0.53	1.0	0.03	16.12	0.00	1.811	5.50	0.45	3.5	96.5	0.0	1.01	0.83	0.76	1.33	3.4	0.007	0.57	1.0	0.03	17.28	0.00	1.756	14.56	0.36	7.3	92.7	0.0	-0.49	1.32	0.85	0.81	1.56	127652	4202	29	1840	2	0	54773	logfile
✔	7VoJ	32050	2022-07-03	2021-10-14	3.0	3.21	—	3.3	0.008	1.01	0.0	0.06	13.59	0.01	2.061	7.78	1.73	3.3	96.5	0.3	-2.46	0.65	0.83	2.35	3.3	0.003	0.57	0.0	0.03	16.76	0.00	1.900	5.11	2.74	3.0	97.0	0.0	2.97	2.16	0.61	0.83	1.68	6318	800	4	0	6	0	0	logfile
✔	7oHC	12900	2022-07-03	2021-05-10	2.5	3.15	—	2.9	0.005	0.86	0.0	0.05	29.78	0.01	2.193	4.61	0.16	1.9	98.1	0.0	0.04	0.84	0.82	3.50	2.9	0.004	0.61	0.0	0.03	29.26	0.00	2.088	8.29	1.57	1.9	98.1	0.0	2.61	1.11	0.86	0.85	3.03	12019	764	10	290	0	0	0	logfile
✔	8CSZ	26976	2022-07-03	2022-05-13	3.2	3.55	3.13	3.3	0.005	0.67	0.0	0.04	19.39	0.00	1.962	11.85	0.00	4.9	95.1	0.0	-0.97	0.84	0.86	4.03	3.3	0.004	0.59	0.0	0.03	19.19	0.00	1.963	10.50	0.00	5.1	94.9	0.0	-0.36	1.12	0.84	0.88	3.50	8948	494	5	236	3	0	0	logfile
✔	7RQX	24639	2022-07-06	2021-08-08	3.36	3.59	—	3.5	0.012	1.06	0.0	0.06	16.98	0.01	2.227	8.03	0.00	3.4	96.6	0.0	-0.29	0.67	0.75	2.39	3.5	0.004	0.50	0.0	0.03	16.18	0.00	2.015	8.41	0.07	3.8	96.2	0.0	0.45	0.48	0.67	0.77	2.49	30450	2016	8	0	26	0	14344	logfile
✔	7RQW	24638	2022-07-06	2021-08-08	3.11	3.40	—	3.5	0.011	0.99	0.0	0.06	16.48	0.00	2.042	7.24	0.00	4.4	95.6	0.0	0.31	0.55	0.69	2.95	3.5	0.007	0.58	1.0	0.03	16.07	0.00	1.978	7.62	0.00	4.4	95.6	0.0	0.77	0.38	0.53	0.67	2.75	32984	2128	8	0	20	0	15804	logfile
✔	7QBi	13887	2022-07-03	2021-11-19	3.46	3.72	3.49	3.7	0.008	1.05	0.0	0.05	14.63	0.01	2.231	3.40	0.00	2.8	97.2	0.0	-1.45	0.59	0.76	2.29	3.7	0.003	0.61	0.0	0.03	15.81	0.00	2.170	12.29	0.66	2.0	98.0	0.0	2.37	1.21	0.60	0.81	1.85	4996	622	8	0	16	0	0	logfile
✔	7N7P	24230	2022-07-03	2021-06-10	3.24	2.66	—	3.2	0.058	2.03	0.0	0.04	19.97	0.00	1.647	7.96	0.35	1.6	98.4	0.0	1.62	0.58	0.84	2.19	3.0	0.003	0.57	0.0	0.03	17.79	0.00	2.123	11.32	0.00	2.0	98.0	0.0	3.61	0.36	0.59	0.85	1.72	5400	626	4	0	2	0	0	logfile

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