Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KDT	22829	2022-05-12	2020-10-09	3.05	3.34	3.19	3.4	0.012	1.74	0.0	0.09	14.56	0.02	2.562	0.12	0.47	1.4	98.6	0.0	-1.64	0.70	0.77	2.95	3.3	0.002	0.51	0.0	0.03	17.10	0.00	2.221	6.08	0.00	1.8	98.2	0.0	3.06	2.82	0.68	0.79	2.35	8064	505	2	0	0	0	4042	logfile
✔	7KWG	23052	2022-05-18	2020-11-30	3.75	3.89	—	3.8	0.009	1.43	1.0	0.07	17.12	0.01	2.227	5.50	2.86	10.7	88.8	0.4	-5.79	0.80	0.82	2.01	3.8	0.005	0.70	0.0	0.03	16.54	0.01	1.696	17.09	0.26	8.5	91.3	0.2	-2.30	1.28	0.79	0.80	1.59	51870	2251	21	1584	0	0	0	logfile
✔	6WU3	21904	2022-05-13	2020-05-04	3.16	3.62	3.40	3.5	0.008	0.60	0.0	0.04	15.89	0.00	2.057	9.10	6.27	8.4	91.6	0.0	-3.62	0.61	0.85	2.96	3.6	0.004	0.58	0.0	0.03	15.93	0.00	2.035	8.73	0.57	6.0	94.0	0.0	1.00	1.85	0.60	0.87	2.53	13610	890	2	0	0	0	6936	logfile
✔	7KTQ	23026	2022-05-13	2020-11-24	3.3	3.36	—	3.3	0.008	0.84	0.0	0.05	29.36	0.01	2.201	6.42	0.16	1.5	98.5	0.0	-2.43	0.77	0.85	3.63	3.3	0.003	0.54	0.0	0.03	29.25	0.00	2.142	6.51	0.32	2.3	97.7	0.0	3.18	1.43	0.78	0.87	2.38	12745	752	10	331	0	0	0	logfile
✔	7K61	22686	2022-05-14	2020-09-17	2.85	3.27	—	3.1	0.007	0.67	0.0	0.04	27.29	0.00	2.130	6.03	0.00	1.5	98.5	0.0	1.15	0.85	0.86	4.35	3.1	0.004	0.57	0.0	0.03	27.87	0.00	2.129	7.81	1.25	2.1	97.9	0.0	2.03	0.36	0.86	0.88	3.49	17723	1222	12	394	0	0	0	logfile
✔	7K5Y	22684	2022-05-14	2020-09-17	2.76	3.18	—	3.1	0.004	0.65	0.0	0.04	27.13	0.00	2.108	7.06	0.00	1.4	98.6	0.0	1.74	0.77	0.81	4.49	3.1	0.004	0.58	0.0	0.03	27.60	0.00	2.171	6.85	1.64	2.0	98.0	0.0	1.86	1.13	0.76	0.83	3.76	18258	1297	13	394	0	0	0	logfile
✔	7C0M	30267	2022-05-16	2020-05-01	3.9	4.76	—	3.8	0.011	0.83	0.0	0.05	27.43	0.00	2.189	13.43	0.73	5.5	94.5	0.0	-1.85	0.76	0.57	1.06	3.8	0.003	0.62	0.0	0.03	27.39	0.00	2.134	12.79	0.10	3.5	96.5	0.0	2.01	0.67	0.88	0.76	0.73	29816	2234	24	580	2	0	0	logfile
✔	6YE4	10789	2022-05-13	2020-03-24	3.2	3.33	3.07	3.3	0.026	1.69	0.0	0.10	14.61	0.01	2.373	3.02	0.00	0.9	99.1	0.0	-3.36	0.73	0.88	2.50	3.3	0.003	0.52	0.0	0.03	16.50	0.00	2.347	5.29	0.22	2.4	97.6	0.0	3.50	0.93	0.67	0.87	1.40	9140	1180	10	0	5	0	0	logfile
✔	6Y5E	10695	2022-05-13	2020-02-25	3.15	3.68	—	3.3	0.014	1.16	0.0	0.07	25.82	0.01	2.429	1.10	0.21	1.9	98.0	0.1	0.54	0.84	0.83	4.07	3.3	0.003	0.59	0.0	0.03	26.11	0.00	2.061	8.19	0.31	1.8	98.2	0.0	1.99	0.64	0.84	0.84	2.42	15292	1120	18	306	9	0	0	logfile
✔	7E4T	30987	2022-05-15	2021-02-15	3.0	3.26	3.08	3.3	0.007	0.79	0.0	0.04	13.89	0.00	2.278	6.59	1.01	1.1	98.9	0.0	0.77	0.50	0.68	3.26	3.3	0.002	0.47	0.0	0.03	16.68	0.00	2.181	5.83	3.34	1.2	98.8	0.0	2.36	1.24	0.71	0.85	3.19	22276	2656	8	0	24	0	0	logfile
✔	7D80	30611	2022-05-22	2020-10-06	4.1	6.37	—	2.8	0.011	1.03	0.0	0.05	16.93	0.01	1.560	8.57	0.88	12.7	86.9	0.3	-5.50	0.81	0.63	—	2.8	0.003	0.55	0.0	0.03	15.71	0.00	1.994	20.84	0.00	9.2	90.6	0.2	-2.52	1.57	0.94	0.88	—	150808	6218	57	4761	0	0	0	logfile
✔	6WKT	21708	2022-05-12	2020-04-16	3.4	3.21	3.09	3.3	0.004	0.81	0.0	0.05	13.97	0.01	2.329	0.65	0.00	1.9	98.1	0.0	-3.42	0.65	0.75	3.69	3.3	0.003	0.59	0.0	0.03	15.90	0.00	2.202	11.45	0.00	4.8	95.2	0.0	3.63	1.34	0.65	0.75	3.76	3152	424	4	0	0	0	0	logfile
✔	7LV8	23529	2022-05-13	2021-02-24	3.4	3.85	3.57	3.8	0.003	0.65	0.0	0.04	27.28	0.00	1.334	3.06	0.17	2.7	97.3	0.0	-3.26	0.70	0.78	0.97	3.9	0.003	0.58	0.0	0.03	27.73	0.00	2.150	9.74	0.33	1.9	98.1	0.0	2.31	0.58	0.70	0.79	1.13	10651	764	10	242	0	0	0	logfile
✔	7BL5	12218	2022-05-17	2021-01-18	3.3	3.74	—	3.5	0.002	0.45	0.0	0.03	14.15	0.00	2.029	11.86	0.11	5.7	94.3	0.0	-1.05	0.75	0.79	1.02	3.5	0.004	0.64	1.0	0.03	15.81	0.00	1.958	17.19	0.88	7.9	92.1	0.0	-1.73	0.57	0.76	0.83	1.21	98927	4348	46	3033	3	27	0	logfile
✔	6VWL	21420	2022-05-17	2020-02-20	3.1	3.37	—	3.0	0.005	0.62	0.0	0.04	13.89	0.00	1.922	7.29	1.40	4.2	95.7	0.0	-2.42	0.82	0.85	2.58	3.0	0.003	0.57	0.0	0.03	15.43	0.00	1.907	13.25	0.37	4.8	95.2	0.0	-0.64	0.54	0.83	0.87	2.09	140603	5383	58	4593	34	0	0	logfile
✔	6ZBF	11153	2022-05-14	2020-06-08	3.2	3.99	3.33	3.6	0.010	1.17	0.0	0.08	13.49	0.01	2.469	1.34	0.00	0.8	99.2	0.0	0.79	0.84	0.76	1.37	3.6	0.013	0.95	1.0	0.03	15.44	0.00	1.947	5.65	0.00	1.1	98.9	0.0	3.87	2.83	0.85	0.78	1.40	19459	1156	4	0	0	0	9861	logfile
✔	6ZBC	11150	2022-05-14	2020-06-08	3.1	3.91	3.31	3.6	0.007	1.02	0.0	0.05	13.80	0.00	2.449	1.08	0.00	1.3	98.7	0.0	-0.79	0.85	0.80	2.24	3.6	0.002	0.47	0.0	0.03	15.19	0.00	2.079	3.69	0.09	1.1	98.9	0.0	4.36	0.84	0.85	0.81	1.55	19534	1160	4	0	0	0	9902	logfile
✔	6ZBE	11152	2022-05-14	2020-06-08	3.3	4.04	3.36	3.7	0.010	1.16	0.0	0.08	13.39	0.01	2.470	1.13	0.00	0.8	99.2	0.0	0.61	0.84	0.76	1.69	3.7	0.002	0.50	0.0	0.03	15.42	0.00	2.067	5.84	0.18	1.3	98.7	0.0	4.15	1.87	0.85	0.79	1.13	19534	1160	4	0	0	0	9902	logfile
✔	6VWN	21422	2022-05-17	2020-02-20	3.4	3.71	—	3.2	0.002	0.58	0.0	0.03	14.91	0.00	1.951	7.15	3.85	4.3	95.7	0.0	-3.14	0.83	0.82	1.13	3.2	0.003	0.60	0.0	0.03	16.17	0.00	1.889	15.68	0.51	6.1	93.9	0.0	-1.23	1.21	0.84	0.86	1.05	140036	5341	57	4580	55	0	0	logfile
✔	6XMF	22257	2022-05-12	2020-06-30	3.1	3.28	—	3.3	0.002	0.56	0.0	0.03	16.46	0.00	2.246	8.82	0.00	6.8	93.2	0.0	-1.78	0.68	0.71	2.25	3.2	0.003	0.61	0.0	0.03	17.72	0.00	2.149	15.78	0.20	9.8	90.2	0.0	-0.48	0.47	0.71	0.76	2.71	7382	627	3	109	1	0	0	logfile

• ← previous
• Page 3 of 376
• next →