Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6L3U	0826	2022-12-14	2019-10-15	2.53	2.59	2.48	2.6	0.010	0.96	0.0	0.05	16.88	0.01	2.206	0.45	3.01	1.9	98.1	0.0	-2.86	0.64	0.84	4.02	2.6	0.002	0.50	0.0	0.03	16.80	0.00	2.116	1.75	1.41	0.5	99.5	0.0	2.85	2.33	0.63	0.86	2.81	19698	1206	18	0	12	174	9588	logfile
✔	6YBW	10775	2022-12-22	2020-03-18	3.1	3.30	2.98	3.2	0.008	1.03	0.0	0.05	16.82	0.02	2.097	4.24	3.04	3.7	96.3	0.0	-2.06	0.74	0.87	3.02	3.2	0.003	0.64	0.0	0.03	16.68	0.01	1.944	8.52	0.44	2.8	97.2	0.0	0.02	1.13	0.74	0.88	2.95	52840	3374	30	1248	61	0	0	logfile
✔	6L3V	0827	2022-12-14	2019-10-15	2.63	2.90	2.72	2.9	0.009	0.92	0.0	0.04	17.16	0.01	2.218	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	2.9	0.002	0.58	0.0	0.03	16.60	0.00	2.191	1.81	1.72	0.5	99.5	0.0	2.35	3.59	0.58	0.87	2.87	19416	1206	12	0	6	0	9528	logfile
✔	7BV8	30215	2022-12-16	2020-04-09	3.14	3.53	—	3.5	0.007	0.75	0.0	0.04	15.53	0.01	2.007	9.22	0.29	8.3	91.5	0.3	-4.23	0.72	0.82	3.09	3.5	0.003	0.55	0.0	0.03	15.28	0.00	2.063	8.11	0.43	5.4	94.5	0.1	-1.41	1.13	0.72	0.84	2.45	91505	3436	32	3017	0	0	0	logfile
✔	6RJU	4906	2022-12-11	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	10.0	0.003	0.66	0.0	0.03	16.23	0.00	2.422	6.03	0.00	3.9	96.1	0.0	-0.32	1.40	0.27	0.03	-0.67	1992	131	1	0	0	0	997	logfile
✔	6PC8	20299	2022-12-14	2019-06-16	2.9	3.26	—	3.1	0.006	0.48	0.0	0.03	12.75	0.02	1.931	3.26	2.62	7.2	92.7	0.1	-4.11	0.71	0.86	3.45	3.1	0.004	0.62	0.0	0.03	14.59	0.01	2.115	8.86	4.32	8.2	91.7	0.1	-1.66	0.45	0.72	0.88	3.21	72169	967	8	3015	1	0	0	logfile
✔	7CRR	30457	2022-12-15	2020-08-14	3.48	3.61	—	3.5	0.007	0.75	0.0	0.04	27.67	0.00	2.037	12.56	1.56	10.2	89.8	0.0	-5.14	0.74	0.82	2.82	3.5	0.004	0.58	0.0	0.03	27.91	0.00	2.210	8.57	0.36	6.4	93.6	0.0	-1.62	0.42	0.78	0.87	2.41	14839	1002	11	336	4	0	0	logfile
✔	6K43	9913	2022-12-16	2019-05-23	3.7	4.12	—	4.0	0.007	0.72	0.0	0.04	15.85	0.00	1.266	17.54	0.12	6.9	93.1	0.0	-2.02	0.75	0.82	1.49	4.1	0.004	0.70	0.0	0.03	18.39	0.00	2.138	6.60	0.54	3.9	96.1	0.0	3.92	0.81	0.77	0.82	1.49	31808	3840	48	0	36	0	0	logfile
✔	6K3o	9910	2022-12-16	2019-05-21	3.4	3.86	—	3.8	0.003	0.56	0.0	0.03	14.46	0.00	1.077	16.09	0.00	3.8	96.2	0.0	-1.52	0.79	0.82	3.15	3.8	0.004	0.73	0.0	0.03	17.05	0.00	1.627	5.96	0.75	2.1	97.9	0.0	3.83	0.50	0.76	0.81	2.46	31508	3790	48	0	36	0	0	logfile
✔	6MRU	9213	2022-12-12	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.002	0.46	0.0	0.03	13.26	0.00	2.192	3.53	0.00	0.6	99.4	0.0	5.66	3.08	0.75	0.86	1.81	29107	3705	13	0	0	0	0	logfile
✔	7KDT	22829	2022-12-11	2020-10-09	3.05	3.34	3.19	3.4	0.012	1.74	0.0	0.09	14.56	0.02	2.562	0.12	0.47	1.4	98.6	0.0	-1.64	0.70	0.77	2.95	3.3	0.004	0.55	0.0	0.03	16.91	0.00	2.224	6.33	0.23	1.8	98.2	0.0	2.64	2.11	0.68	0.80	2.66	8064	505	2	0	0	0	4042	logfile
✔	6MRT	9212	2022-12-11	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.46	0.0	0.03	15.43	0.00	2.226	3.14	1.29	0.5	99.5	0.0	5.71	3.08	0.73	0.86	2.07	26868	3420	12	0	0	0	0	logfile
✔	6ZHX	11220	2022-12-12	2020-06-24	2.5	3.01	2.20	2.7	0.005	0.92	0.0	0.06	26.86	0.01	2.203	2.72	0.46	1.0	99.0	0.0	0.63	0.88	0.90	5.80	2.7	0.005	0.59	0.0	0.03	28.61	0.00	2.138	5.45	1.38	0.9	99.1	0.0	2.81	0.45	0.89	0.92	4.64	12313	784	22	290	0	146	0	logfile
✔	7JGG	22326	2022-12-11	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.6	0.003	0.54	0.0	0.03	12.79	0.00	1.898	99.07	0.00	5.9	94.1	0.0	0.89	1.75	0.67	0.71	—	4210	506	1	0	0	0	28	logfile
✔	7KTQ	23026	2022-12-12	2020-11-24	3.3	3.36	—	3.3	0.008	0.84	0.0	0.05	29.36	0.01	2.201	6.42	0.16	1.5	98.5	0.0	-2.43	0.77	0.85	3.63	3.3	0.004	0.56	0.0	0.03	29.41	0.00	2.137	6.29	0.16	2.3	97.7	0.0	2.92	3.06	0.79	0.88	2.56	12745	752	10	331	0	0	0	logfile
✔	6W7N	21572	2022-12-21	2020-03-19	3.4	3.72	—	3.6	0.002	0.46	0.0	0.03	14.05	0.00	1.907	8.15	0.08	8.2	91.5	0.3	-4.03	0.78	0.78	1.44	3.6	0.005	0.64	0.0	0.03	15.40	0.00	2.136	11.29	0.69	11.6	88.1	0.3	-2.05	1.23	0.81	0.83	1.49	42287	1660	15	1372	0	0	0	logfile
✔	7BYN	30246	2022-12-13	2020-04-23	3.3	3.57	—	3.6	0.011	1.31	0.0	0.05	20.29	0.01	1.949	24.44	16.39	2.9	96.9	0.2	-0.58	0.48	0.52	0.70	3.6	0.003	0.64	0.0	0.03	17.62	0.00	2.166	8.76	0.24	1.4	98.6	0.1	2.08	1.49	0.58	0.79	0.67	16349	2000	12	0	8	0	0	logfile
✔	6MRW	9214	2022-12-12	2018-10-15	4.3	4.76	—	4.3	0.006	0.98	0.0	0.04	10.35	0.01	2.080	4.61	0.41	2.1	97.9	0.0	-0.19	0.82	0.84	—	4.3	0.002	0.48	0.0	0.03	11.74	0.00	2.080	6.81	0.00	1.8	98.2	0.0	6.05	1.27	0.83	0.86	—	31346	3990	14	0	0	0	0	logfile
✔	6XMF	22257	2022-12-11	2020-06-30	3.1	3.28	—	3.3	0.002	0.56	0.0	0.03	16.46	0.00	2.246	8.82	0.00	6.8	93.2	0.0	-1.78	0.68	0.71	2.25	3.2	0.003	0.61	0.0	0.03	17.63	0.00	2.152	15.34	0.60	9.3	90.7	0.0	-0.42	0.47	0.72	0.77	2.82	7382	627	3	109	1	0	0	logfile
✔	6WCB	21605	2022-12-12	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.002	0.48	0.0	0.03	15.53	0.00	2.084	3.96	0.16	1.5	98.5	0.0	3.59	1.29	0.54	0.79	2.38	11647	734	6	0	7	40	5904	logfile

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