Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ZGi	11207	2023-04-28	2020-06-18	2.9	3.12	3.02	3.1	0.007	0.80	0.0	0.05	12.59	0.00	2.317	1.64	0.73	4.2	95.7	0.1	-0.93	0.75	0.83	4.10	3.1	0.003	0.59	0.0	0.04	14.86	0.00	2.162	2.74	1.43	4.3	95.7	0.0	-0.51	1.19	0.74	0.84	3.87	26901	3294	33	0	78	0	0	logfile
✔	7STo	25435	2023-04-27	2021-11-14	3.15	3.45	—	3.3	0.007	0.82	0.0	0.04	10.39	0.00	2.289	1.13	0.15	2.3	97.7	0.0	1.91	0.68	0.82	3.05	3.3	0.003	0.46	0.0	0.04	12.87	0.00	2.194	2.76	0.15	3.1	96.7	0.1	1.88	1.23	0.70	0.86	2.74	25210	1580	4	0	10	0	12268	logfile
✔	7STL	25432	2023-04-27	2021-11-14	2.95	3.30	—	3.2	0.004	0.75	0.0	0.04	10.31	0.00	2.190	0.38	0.15	2.3	97.7	0.0	1.82	0.67	0.82	3.24	3.2	0.004	0.48	0.0	0.04	13.91	0.00	2.104	2.76	0.59	3.5	96.3	0.1	1.65	0.57	0.66	0.84	3.21	25668	1600	4	0	8	0	12568	logfile
✔	7USA	26730	2023-04-27	2022-04-23	2.8	2.94	2.77	3.0	0.015	1.60	18.0	0.13	9.68	0.01	1.968	1.95	0.04	3.5	96.2	0.3	0.09	0.75	0.85	4.68	3.0	0.003	0.60	0.0	0.05	13.70	0.00	2.280	2.78	1.61	2.1	97.8	0.1	0.63	0.99	0.74	0.90	4.16	24307	3181	33	0	90	0	0	logfile
✔	7KPW	22990	2023-04-20	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.9	0.003	0.73	0.0	0.04	5.85	0.00	2.148	2.79	0.00	11.5	87.9	0.6	-0.50	2.04	0.82	0.82	—	4313	865	1	0	0	0	0	logfile
✔	7BH9	12187	2023-04-20	2021-01-11	2.9	3.58	2.91	3.4	0.007	0.77	0.0	0.05	13.27	0.00	2.021	5.17	0.33	4.9	95.1	0.0	-3.10	0.85	0.88	3.70	3.4	0.002	0.54	0.0	0.04	15.07	0.00	2.180	2.80	1.33	1.9	98.1	0.0	0.68	0.39	0.80	0.83	2.63	5876	730	3	0	4	0	0	logfile
✔	7SoE	25268	2023-04-27	2021-10-29	2.8	2.87	2.84	2.8	0.010	1.29	0.0	0.07	9.88	0.01	2.416	1.06	0.15	2.0	98.0	0.0	0.29	0.74	0.80	3.95	2.8	0.002	0.60	0.0	0.05	13.26	0.00	2.198	2.81	1.79	1.7	98.3	0.0	0.97	1.02	0.73	0.84	3.06	25947	3783	15	0	57	0	0	logfile
✔	6oVH	20212	2023-04-21	2019-05-07	2.6	2.81	2.71	2.8	0.014	1.10	0.0	0.04	17.48	0.01	1.203	1.15	4.55	1.0	99.0	0.0	-6.34	0.75	0.87	4.63	2.8	0.003	0.75	0.0	0.04	18.69	0.00	2.055	2.87	0.38	0.8	99.2	0.0	2.63	0.98	0.77	0.89	3.77	10895	1272	36	0	68	171	0	logfile
✔	7NPS	12518	2023-04-20	2021-02-28	3.81	3.93	3.82	3.9	0.010	1.15	6.0	0.08	11.02	0.01	2.182	1.23	0.00	2.5	97.5	0.0	-1.44	0.82	0.82	2.59	3.9	0.002	0.59	0.0	0.05	12.84	0.00	1.895	2.91	0.00	1.8	98.2	0.0	-0.02	0.68	0.83	0.83	2.26	55350	3732	9	0	0	0	27681	logfile
✔	7PKB	13467	2023-04-23	2021-08-25	3.2	2.68	3.08	3.1	0.008	0.90	0.0	0.14	13.28	0.01	1.950	3.97	0.00	5.1	94.8	0.1	-0.98	0.72	0.85	5.32	3.2	0.003	0.70	0.0	0.14	13.54	0.00	2.127	2.91	0.00	3.4	96.6	0.0	-0.34	0.58	0.73	0.87	4.70	16145	1030	15	0	10	5	7970	logfile
✔	7TM0	25992	2023-04-28	2022-01-19	3.1	3.24	3.21	3.2	0.010	1.37	0.0	0.08	8.70	0.01	2.264	1.47	0.17	2.4	97.6	0.0	0.62	0.73	0.76	3.91	3.2	0.005	0.67	0.0	0.05	11.92	0.00	2.154	2.97	0.17	3.4	96.6	0.0	0.35	1.30	0.78	0.83	3.63	27963	4401	19	0	52	0	0	logfile
✔	8CVN	27010	2023-04-20	2022-05-18	2.4	3.23	2.42	3.1	0.014	1.53	3.0	0.08	17.97	0.00	2.524	1.49	1.21	2.4	97.6	0.0	0.60	0.84	0.87	3.98	3.1	0.002	0.82	0.0	0.04	18.09	0.00	2.305	2.98	2.17	1.6	98.4	0.0	1.58	0.81	0.76	0.87	3.33	4054	512	4	0	4	0	0	logfile
✔	7LiS	23384	2023-04-27	2021-01-27	2.96	3.25	—	3.2	0.008	0.79	0.0	0.06	14.46	0.00	2.214	2.81	3.45	3.5	96.5	0.0	0.22	0.75	0.88	4.54	3.2	0.003	0.51	0.0	0.04	16.57	0.00	2.171	3.00	1.80	3.1	96.9	0.0	0.66	0.34	0.77	0.89	3.19	128880	15660	60	0	60	0	0	logfile
✔	7DZY	30921	2023-04-24	2021-01-26	3.6	3.83	3.38	3.1	0.020	2.12	0.0	0.00	4.32	0.01	1.980	3.14	0.00	3.7	95.4	0.9	-0.42	0.43	0.27	—	3.3	0.003	0.83	0.0	0.00	5.21	0.00	2.105	3.02	0.00	10.5	89.3	0.2	-2.46	2.13	0.71	0.70	—	18708	4677	9	0	0	0	0	logfile
✔	7S8N	24898	2023-04-20	2021-09-18	2.9	2.20	2.92	2.1	0.012	0.90	0.0	0.06	13.04	0.01	2.202	4.10	0.00	5.1	94.9	0.0	-0.33	0.79	0.80	3.96	2.1	0.004	0.60	0.0	0.04	15.91	0.00	2.215	3.02	1.47	3.2	96.8	0.0	0.80	1.01	0.82	0.83	2.92	8154	1090	6	0	1	0	0	logfile
✔	7R5M	14331	2023-04-22	2022-02-11	3.3	3.09	3.20	3.2	0.006	0.94	0.0	0.06	14.64	0.00	2.411	1.26	0.80	4.6	95.4	0.0	-0.79	0.70	0.80	2.46	3.1	0.003	0.56	0.0	0.04	16.00	0.00	2.111	3.04	0.08	1.6	98.4	0.0	1.73	1.36	0.70	0.86	2.07	11295	1491	9	0	0	0	0	logfile
✔	7M05	23609	2023-04-20	2021-03-10	2.39	2.66	2.49	2.6	0.013	0.89	0.0	0.06	14.64	0.01	2.064	3.66	0.50	6.9	92.3	0.8	-3.01	0.75	0.81	4.52	2.6	0.004	0.63	0.0	0.05	16.24	0.00	2.046	3.05	1.19	3.6	96.3	0.1	0.16	1.27	0.79	0.84	4.23	57152	3636	12	0	4	0	28188	logfile
✔	7oD3	12818	2023-04-26	2021-04-28	2.8	2.59	3.00	2.7	0.004	0.61	0.0	0.05	14.00	0.00	1.953	2.55	0.23	4.8	95.2	0.0	-1.05	0.73	0.81	3.95	2.7	0.007	0.78	0.0	0.05	16.38	0.01	2.113	3.07	2.32	5.5	94.5	0.0	-0.87	0.30	0.75	0.85	3.90	24222	3036	6	0	36	0	0	logfile
✔	7MQE	23944	2023-04-26	2021-05-05	3.69	3.22	3.67	3.5	0.008	0.84	0.0	0.06	13.45	0.00	2.308	1.58	0.77	1.7	98.3	0.0	0.67	0.75	0.81	3.89	3.5	0.006	0.60	0.0	0.05	14.01	0.00	2.248	3.07	0.29	3.6	96.4	0.0	1.06	0.41	0.79	0.84	3.33	12163	1629	16	16	0	0	0	logfile
✔	8FHP	29098	2023-04-20	2022-12-14	3.04	3.38	3.13	3.3	0.009	0.80	0.0	0.05	13.08	0.01	2.227	5.38	0.39	3.8	96.2	0.0	-1.88	0.61	0.85	2.63	3.3	0.003	0.53	0.0	0.04	15.04	0.00	2.254	3.07	0.39	2.5	97.5	0.0	0.71	0.34	0.56	0.84	2.14	7306	950	4	0	4	0	0	logfile

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