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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6UFR | 20759 | 2022-12-11 | 2019-09-24 | 2.5 | 2.80 | — | 2.8 | 0.012 | 0.96 | 0.0 | 0.07 | 13.71 | 0.01 | 2.209 | 5.48 | 0.00 | 6.6 | 93.4 | 0.0 | -1.99 | 0.50 | 0.87 | 5.55 | 2.8 | 0.004 | 0.63 | 0.0 | 0.06 | 17.00 | 0.00 | 2.402 | 2.46 | 2.95 | 4.8 | 95.2 | 0.0 | -0.87 | 0.98 | 0.51 | 0.89 | 5.06 | 4420 | 630 | 20 | 0 | 0 | 90 | 0 | logfile |
✔ | 7PBT | 13302 | 2022-12-16 | 2021-08-02 | 3.3 | 2.86 | 3.16 | 3.1 | 0.004 | 0.69 | 0.0 | 0.04 | 14.81 | 0.01 | 1.830 | 1.24 | 0.12 | 1.1 | 98.9 | 0.0 | -0.27 | 0.67 | 0.79 | 3.06 | 3.0 | 0.003 | 0.55 | 0.0 | 0.04 | 17.14 | 0.00 | 1.806 | 2.52 | 0.12 | 1.1 | 98.9 | 0.0 | 1.50 | 1.33 | 0.73 | 0.84 | 2.50 | 31318 | 1918 | 15 | 30 | 9 | 0 | 15439 | logfile |
✔ | 6TQF | 10550 | 2022-12-12 | 2019-12-16 | 3.5 | 3.81 | — | 3.7 | 0.009 | 0.96 | 0.0 | 0.06 | 15.62 | 0.01 | 2.092 | 3.00 | 0.09 | 5.2 | 94.8 | 0.0 | -6.53 | 0.74 | 0.90 | 2.73 | 3.7 | 0.003 | 0.61 | 0.0 | 0.04 | 15.80 | 0.00 | 1.946 | 2.57 | 0.09 | 3.9 | 96.1 | 0.0 | -3.90 | 0.35 | 0.74 | 0.90 | 2.92 | 10426 | 1268 | 4 | 0 | 14 | 0 | 0 | logfile |
✔ | 7VD8 | 31910 | 2022-12-20 | 2021-09-06 | 1.96 | 1.42 | 2.01 | 1.7 | 0.002 | 0.54 | 0.0 | 0.04 | 16.17 | 0.00 | 2.013 | 3.17 | 0.03 | 2.2 | 97.8 | 0.0 | 5.39 | 0.75 | 0.80 | 7.92 | 1.7 | 0.002 | 0.55 | 0.0 | 0.04 | 16.50 | 0.00 | 2.001 | 2.61 | 0.05 | 1.5 | 98.5 | 0.0 | 5.41 | 0.23 | 0.74 | 0.80 | 8.03 | 38201 | 4128 | 72 | 0 | 329 | 2472 | 0 | logfile |
✔ | 7BH9 | 12187 | 2022-12-11 | 2021-01-11 | 2.9 | 3.58 | 2.91 | 3.4 | 0.007 | 0.76 | 0.0 | 0.05 | 13.23 | 0.00 | 2.021 | 5.17 | 0.33 | 4.9 | 95.1 | 0.0 | -3.10 | 0.85 | 0.88 | 3.70 | 3.4 | 0.003 | 0.55 | 0.0 | 0.04 | 14.94 | 0.00 | 2.179 | 2.63 | 1.16 | 2.1 | 97.9 | 0.0 | 0.70 | 0.39 | 0.80 | 0.83 | 2.54 | 5876 | 730 | 3 | 0 | 4 | 0 | 0 | logfile |
✔ | 7STL | 25432 | 2022-12-15 | 2021-11-14 | 2.95 | 3.30 | — | 3.2 | 0.004 | 0.75 | 0.0 | 0.04 | 10.31 | 0.00 | 2.190 | 0.38 | 0.15 | 2.3 | 97.7 | 0.0 | 1.82 | 0.67 | 0.82 | 3.24 | 3.2 | 0.003 | 0.48 | 0.0 | 0.04 | 13.95 | 0.00 | 2.109 | 2.72 | 0.74 | 3.5 | 96.4 | 0.1 | 1.61 | 0.57 | 0.65 | 0.84 | 3.28 | 25668 | 1600 | 4 | 0 | 8 | 0 | 12568 | logfile |
✔ | 7A6A | 11668 | 2022-12-16 | 2020-08-25 | 1.15 | 1.13 | — | 1.2 | 0.018 | 1.70 | 24.0 | 0.16 | 14.68 | 0.01 | 1.857 | 4.11 | 3.03 | 1.2 | 98.8 | 0.0 | 2.45 | 0.47 | 0.61 | 9.02 | 1.2 | 0.003 | 0.57 | 0.0 | 0.04 | 15.15 | 0.00 | 2.188 | 2.73 | 1.82 | 1.8 | 98.2 | 0.0 | 4.61 | 0.45 | 0.69 | 0.82 | 8.90 | 41613 | 4152 | 72 | 0 | 32 | 4621 | 0 | logfile |
✔ | 7UL4 | 26591 | 2022-12-11 | 2022-04-03 | 2.8 | 2.99 | 2.86 | 3.0 | 0.010 | 1.08 | 0.0 | 0.06 | 12.51 | 0.01 | 2.222 | 2.52 | 0.00 | 2.1 | 97.9 | 0.0 | 1.05 | 0.65 | 0.80 | 4.17 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 14.90 | 0.00 | 2.270 | 2.73 | 1.38 | 1.2 | 98.8 | 0.0 | 2.14 | 0.42 | 0.60 | 0.81 | 3.26 | 2524 | 351 | 3 | 0 | 1 | 4 | 0 | logfile |
✔ | 7XKH | 33251 | 2022-12-15 | 2022-04-19 | 3.1 | 3.59 | 2.97 | 3.3 | 0.002 | 0.44 | 0.0 | 0.04 | 12.68 | 0.00 | 2.283 | 2.65 | 0.00 | 1.6 | 98.4 | 0.0 | 1.48 | 0.85 | 0.87 | 2.71 | 3.3 | 0.002 | 0.49 | 0.0 | 0.04 | 14.25 | 0.00 | 2.218 | 2.75 | 0.00 | 2.3 | 97.7 | 0.0 | 0.94 | 1.12 | 0.87 | 0.91 | 2.79 | 25068 | 3257 | 9 | 0 | 1 | 0 | 0 | logfile |
✔ | 7XTZ | 33453 | 2022-12-11 | 2022-05-18 | 2.8 | 2.99 | 2.73 | 2.9 | 0.012 | 0.86 | 0.0 | 0.05 | 13.31 | 0.00 | 2.204 | 0.77 | 0.42 | 3.2 | 96.8 | 0.0 | -0.29 | 0.83 | 0.84 | 4.09 | 2.9 | 0.003 | 0.48 | 0.0 | 0.04 | 14.14 | 0.00 | 2.053 | 2.76 | 0.73 | 3.1 | 96.9 | 0.0 | -0.03 | 0.29 | 0.83 | 0.86 | 3.80 | 51900 | 3291 | 21 | 0 | 75 | 0 | 25032 | logfile |
✔ | 7RSQ | 24677 | 2022-12-11 | 2021-08-11 | 3.8 | 4.03 | 3.73 | 4.1 | 0.008 | 0.80 | 0.0 | 0.05 | 12.74 | 0.00 | 2.360 | 4.01 | 2.88 | 3.0 | 97.0 | 0.0 | -0.64 | 0.63 | 0.68 | 1.39 | 4.2 | 0.002 | 0.51 | 0.0 | 0.03 | 15.35 | 0.00 | 2.389 | 2.76 | 0.00 | 2.6 | 97.4 | 0.0 | 2.59 | 1.83 | 0.63 | 0.70 | 1.77 | 3970 | 246 | 1 | 0 | 0 | 0 | 1958 | logfile |
✔ | 7KoD | 22972 | 2022-12-13 | 2020-11-08 | 1.655 | 2.30 | — | 1.9 | 0.001 | 0.33 | 0.0 | 0.03 | 8.49 | 0.00 | 2.288 | 0.80 | 0.00 | 1.1 | 98.9 | 0.0 | 6.14 | 0.91 | 0.91 | 8.16 | 2.0 | 0.005 | 0.51 | 0.0 | 0.04 | 13.89 | 0.00 | 1.846 | 2.78 | 0.11 | 0.8 | 99.2 | 0.0 | 5.13 | 0.58 | 0.87 | 0.93 | 8.03 | 68186 | 4128 | 48 | 0 | 0 | 1727 | 32643 | logfile |
✔ | 7STM | 25433 | 2022-12-15 | 2021-11-14 | 3.02 | 3.45 | — | 3.3 | 0.008 | 0.93 | 0.0 | 0.05 | 10.40 | 0.00 | 2.229 | 1.41 | 0.31 | 2.4 | 97.6 | 0.0 | 2.06 | 0.68 | 0.82 | 3.32 | 3.2 | 0.003 | 0.43 | 0.0 | 0.04 | 12.50 | 0.00 | 1.991 | 2.78 | 0.00 | 3.8 | 96.0 | 0.3 | 1.50 | 3.61 | 0.66 | 0.85 | 3.36 | 25040 | 1602 | 4 | 0 | 12 | 0 | 12100 | logfile |
✔ | 7TAN | 25777 | 2022-12-12 | 2021-12-21 | 3.0 | 2.95 | — | 3.1 | 0.003 | 0.47 | 0.0 | 0.03 | 27.32 | 0.00 | 2.287 | 3.25 | 0.00 | 2.8 | 97.2 | 0.0 | 2.18 | 0.82 | 0.85 | 2.22 | 3.1 | 0.004 | 0.52 | 0.0 | 0.03 | 27.86 | 0.00 | 2.211 | 2.79 | 0.47 | 1.9 | 98.1 | 0.0 | 2.21 | 0.33 | 0.84 | 0.87 | 1.98 | 12119 | 768 | 12 | 294 | 0 | 0 | 0 | logfile |
✔ | 7DZY | 30921 | 2022-12-14 | 2021-01-26 | 3.6 | 3.83 | 3.38 | 3.1 | 0.020 | 2.12 | 0.0 | 0.00 | 4.32 | 0.01 | 1.980 | 3.14 | 0.00 | 3.7 | 95.4 | 0.9 | -0.42 | 0.43 | 0.27 | — | 3.3 | 0.003 | 0.85 | 0.0 | 0.00 | 5.31 | 0.00 | 2.074 | 2.81 | 0.00 | 11.3 | 88.5 | 0.2 | -2.84 | 2.17 | 0.71 | 0.71 | — | 18708 | 4677 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YNV | 10857 | 2022-12-11 | 2020-04-14 | 2.8 | 3.33 | 2.74 | 3.2 | 0.014 | 0.90 | 0.0 | 0.06 | 15.71 | 0.01 | 2.129 | 6.07 | 1.67 | 6.0 | 94.0 | 0.0 | -3.24 | 0.64 | 0.88 | 5.38 | 3.2 | 0.003 | 0.55 | 0.0 | 0.04 | 15.77 | 0.00 | 2.222 | 2.81 | 0.56 | 5.3 | 94.7 | 0.0 | 0.31 | 1.43 | 0.64 | 0.90 | 5.07 | 6724 | 417 | 1 | 0 | 1 | 0 | 3285 | logfile |
✔ | 7T10 | 25586 | 2022-12-12 | 2021-11-30 | 2.5 | 2.70 | — | 2.8 | 0.005 | 1.00 | 0.0 | 0.06 | 12.36 | 0.01 | 2.235 | 3.92 | 0.73 | 3.0 | 97.0 | 0.0 | 0.62 | 0.64 | 0.83 | 4.77 | 2.8 | 0.002 | 0.57 | 0.0 | 0.04 | 13.98 | 0.00 | 2.271 | 2.81 | 1.10 | 2.8 | 97.2 | 0.0 | 1.55 | 0.91 | 0.64 | 0.84 | 3.75 | 8429 | 1146 | 9 | 0 | 0 | 5 | 0 | logfile |
✔ | 7oSL | 13054 | 2022-12-22 | 2021-06-09 | 3.1 | 2.94 | 3.08 | 3.1 | 0.010 | 1.26 | 0.0 | 0.07 | 12.14 | 0.01 | 2.374 | 0.44 | 0.00 | 1.3 | 98.7 | 0.0 | -2.09 | 0.61 | 0.67 | 2.20 | 3.1 | 0.002 | 0.53 | 0.0 | 0.04 | 14.71 | 0.00 | 2.203 | 2.82 | 0.07 | 2.1 | 97.9 | 0.0 | 1.19 | 0.75 | 0.73 | 0.79 | 1.81 | 47885 | 2935 | 9 | 0 | 0 | 0 | 24225 | logfile |
✔ | 7Xo3 | 33335 | 2022-12-11 | 2022-04-30 | 2.6 | 2.32 | 1.68 | 2.7 | 0.002 | 0.41 | 0.0 | 0.05 | 12.37 | 0.00 | 2.223 | 4.70 | 0.00 | 8.2 | 91.8 | 0.0 | -3.31 | 0.45 | 0.81 | 5.78 | 2.7 | 0.004 | 0.58 | 0.0 | 0.05 | 16.32 | 0.00 | 2.257 | 2.82 | 2.65 | 12.3 | 87.7 | 0.0 | -1.83 | 2.17 | 0.48 | 0.85 | 5.48 | 2598 | 378 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oD3 | 12818 | 2022-12-15 | 2021-04-28 | 2.8 | 2.59 | 3.00 | 2.7 | 0.004 | 0.58 | 0.0 | 0.05 | 13.89 | 0.00 | 1.953 | 2.61 | 0.23 | 4.8 | 95.2 | 0.0 | -1.05 | 0.73 | 0.81 | 3.95 | 2.7 | 0.002 | 0.53 | 0.0 | 0.05 | 16.08 | 0.00 | 2.193 | 2.84 | 1.90 | 3.0 | 97.0 | 0.0 | -0.47 | 0.31 | 0.74 | 0.84 | 3.77 | 24222 | 3036 | 6 | 0 | 36 | 0 | 0 | logfile |