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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7QEQ | 13937 | 2022-05-14 | 2021-12-03 | 1.9 | 2.38 | 1.89 | 2.1 | 0.009 | 0.61 | 0.0 | 0.04 | 12.54 | 0.00 | 2.181 | 2.19 | 1.18 | 1.1 | 98.9 | 0.0 | 1.60 | 0.82 | 0.90 | 4.56 | 2.1 | 0.003 | 0.58 | 0.0 | 0.04 | 14.03 | 0.00 | 2.247 | 2.92 | 1.13 | 1.8 | 98.2 | 0.0 | 4.07 | 0.99 | 0.82 | 0.92 | 4.18 | 19313 | 2268 | 36 | 0 | 60 | 305 | 0 | logfile |
✔ | 6i5A | 4413 | 2022-05-12 | 2018-11-13 | 2.3 | 2.34 | 1.50 | 2.3 | 0.012 | 1.84 | 1.0 | 0.10 | 14.16 | 0.01 | 2.431 | 6.70 | 0.74 | 1.3 | 97.4 | 1.3 | -0.89 | 0.26 | 0.84 | 3.95 | 2.3 | 0.003 | 0.54 | 0.0 | 0.04 | 16.64 | 0.00 | 2.349 | 2.93 | 4.44 | 2.0 | 98.0 | 0.0 | 2.46 | 1.23 | 0.30 | 0.88 | 4.22 | 1206 | 153 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5XB1 | 6714 | 2022-05-16 | 2017-03-15 | 3.0 | 3.16 | 2.84 | 3.1 | 0.007 | 0.71 | 0.0 | 0.05 | 10.82 | 0.00 | 2.173 | 4.77 | 0.00 | 2.0 | 98.0 | 0.0 | -6.31 | 0.80 | 0.88 | 4.19 | 3.1 | 0.003 | 0.57 | 0.0 | 0.04 | 18.09 | 0.00 | 2.165 | 2.93 | 3.48 | 2.7 | 97.3 | 0.0 | 3.54 | 0.69 | 0.80 | 0.86 | 2.84 | 30847 | 3720 | 48 | 0 | 0 | 55 | 0 | logfile |
✔ | 7NPS | 12518 | 2022-05-12 | 2021-02-28 | 3.81 | 3.93 | 3.82 | 3.9 | 0.010 | 1.15 | 6.0 | 0.08 | 11.02 | 0.01 | 2.182 | 1.23 | 0.00 | 2.5 | 97.5 | 0.0 | -1.44 | 0.82 | 0.82 | 2.59 | 3.9 | 0.003 | 0.60 | 0.0 | 0.05 | 12.93 | 0.00 | 1.898 | 2.93 | 0.03 | 2.2 | 97.8 | 0.0 | -0.04 | 0.68 | 0.83 | 0.83 | 2.29 | 55350 | 3732 | 9 | 0 | 0 | 0 | 27681 | logfile |
✔ | 7PY2 | 13708 | 2022-05-12 | 2021-10-08 | 2.59 | 2.64 | 1.53 | 2.7 | 0.015 | 1.83 | 0.0 | 0.08 | 17.26 | 0.01 | 2.423 | 1.71 | 2.00 | 9.1 | 90.9 | 0.0 | -5.22 | 0.45 | 0.84 | 6.05 | 2.8 | 0.004 | 0.86 | 0.0 | 0.05 | 18.18 | 0.00 | 2.155 | 2.93 | 4.00 | 5.2 | 94.8 | 0.0 | -3.95 | 1.38 | 0.50 | 0.88 | 5.97 | 2152 | 316 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K3W | 22658 | 2022-05-17 | 2020-09-14 | 1.36 | 1.48 | — | 1.5 | 0.005 | 0.76 | 0.0 | 0.04 | 14.50 | 0.00 | 1.934 | 3.63 | 0.00 | 1.8 | 98.2 | 0.0 | 3.35 | 0.73 | 0.80 | 9.05 | 1.5 | 0.003 | 0.65 | 0.0 | 0.04 | 14.77 | 0.00 | 2.038 | 2.97 | 0.00 | 1.8 | 98.2 | 0.0 | 4.21 | 0.17 | 0.75 | 0.82 | 9.20 | 39086 | 4128 | 72 | 0 | 382 | 2680 | 0 | logfile |
✔ | 6XEU | 22150 | 2022-05-13 | 2020-06-13 | 3.2 | 3.84 | — | 3.7 | 0.008 | 0.82 | 4.0 | 0.06 | 15.45 | 0.01 | 2.387 | 2.82 | 2.83 | 11.3 | 88.7 | 0.0 | -2.88 | 0.76 | 0.88 | 3.94 | 3.7 | 0.002 | 0.58 | 0.0 | 0.04 | 15.83 | 0.00 | 2.299 | 2.97 | 0.35 | 4.7 | 95.3 | 0.0 | 0.13 | 0.36 | 0.77 | 0.89 | 3.04 | 10544 | 1312 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 7NKJ | 12441 | 2022-05-17 | 2021-02-18 | 2.17 | 2.16 | — | 2.1 | 0.005 | 0.59 | 0.0 | 0.05 | 16.78 | 0.00 | 1.958 | 2.92 | 1.05 | 1.8 | 98.2 | 0.1 | 1.04 | 0.80 | 0.89 | 6.04 | 2.1 | 0.004 | 0.55 | 0.0 | 0.04 | 16.76 | 0.00 | 1.766 | 2.97 | 1.05 | 1.6 | 98.3 | 0.1 | 1.18 | 0.12 | 0.80 | 0.90 | 5.92 | 45605 | 2945 | 20 | 0 | 11 | 516 | 22478 | logfile |
✔ | 7QKW | 14055 | 2022-05-12 | 2021-12-19 | 2.32 | 1.74 | 2.60 | 2.3 | 0.010 | 1.93 | 1.0 | 0.10 | 13.53 | 0.01 | 2.534 | 0.00 | 0.00 | 5.4 | 94.6 | 0.0 | -2.79 | 0.41 | 0.81 | 7.02 | 2.3 | 0.002 | 0.52 | 0.0 | 0.05 | 16.59 | 0.00 | 2.445 | 2.98 | 1.09 | 4.8 | 95.2 | 0.0 | -2.85 | 1.38 | 0.41 | 0.84 | 5.96 | 4707 | 306 | 6 | 0 | 0 | 0 | 2439 | logfile |
✔ | 6ZBL | 11157 | 2022-05-17 | 2020-06-08 | 3.6 | 4.39 | 3.70 | 4.0 | 0.014 | 1.20 | 0.0 | 0.07 | 14.69 | 0.01 | 2.400 | 1.54 | 0.00 | 0.7 | 99.3 | 0.0 | -0.56 | 0.87 | 0.79 | 1.33 | 4.0 | 0.003 | 0.47 | 0.0 | 0.03 | 15.53 | 0.00 | 2.015 | 2.99 | 0.00 | 1.0 | 99.0 | 0.0 | 4.19 | 1.34 | 0.88 | 0.82 | 0.89 | 39074 | 2326 | 4 | 0 | 0 | 0 | 19788 | logfile |
✔ | 7RHX | 24470 | 2022-05-15 | 2021-07-19 | 3.23 | 3.49 | 3.31 | 3.4 | 0.004 | 0.79 | 0.0 | 0.05 | 20.49 | 0.01 | 2.289 | 1.05 | 0.00 | 2.0 | 98.0 | 0.0 | -0.38 | 0.75 | 0.84 | 2.43 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 22.04 | 0.00 | 2.119 | 3.03 | 0.00 | 2.8 | 97.2 | 0.0 | 1.32 | 1.07 | 0.76 | 0.87 | 1.58 | 25787 | 1288 | 8 | 168 | 0 | 0 | 12159 | logfile |
✔ | 7ABH | 11696 | 2022-05-14 | 2020-09-07 | 4.5 | 4.60 | — | 4.4 | 0.003 | 0.63 | 0.0 | 0.05 | 9.27 | 0.00 | 1.529 | 2.09 | 0.00 | 6.0 | 93.7 | 0.2 | -2.78 | 0.75 | 0.77 | — | 4.4 | 0.002 | 0.63 | 0.0 | 0.04 | 9.50 | 0.00 | 2.174 | 3.05 | 0.00 | 6.2 | 93.8 | 0.0 | -0.31 | 1.29 | 0.77 | 0.80 | — | 17922 | 3288 | 16 | 65 | 0 | 0 | 0 | logfile |
✔ | 7BKP | 12213 | 2022-05-13 | 2021-01-16 | 2.8 | 2.78 | 2.75 | 2.9 | 0.009 | 0.84 | 0.0 | 0.05 | 12.30 | 0.00 | 1.824 | 2.31 | 0.32 | 6.5 | 93.2 | 0.3 | -2.15 | 0.66 | 0.84 | 3.66 | 2.9 | 0.002 | 0.50 | 0.0 | 0.04 | 14.82 | 0.00 | 2.143 | 3.05 | 1.30 | 5.3 | 94.7 | 0.0 | 1.43 | 2.05 | 0.64 | 0.86 | 2.77 | 12118 | 689 | 4 | 28 | 3 | 0 | 5956 | logfile |
✔ | 7MQF | 23945 | 2022-05-15 | 2021-05-05 | 2.88 | 2.74 | 2.86 | 2.8 | 0.006 | 0.72 | 0.0 | 0.06 | 11.73 | 0.00 | 2.175 | 1.47 | 0.00 | 0.5 | 99.5 | 0.0 | 1.24 | 0.72 | 0.87 | 6.16 | 2.7 | 0.003 | 0.48 | 0.0 | 0.04 | 13.44 | 0.00 | 2.256 | 3.06 | 0.00 | 1.0 | 99.0 | 0.0 | 1.02 | 0.44 | 0.80 | 0.91 | 5.71 | 12288 | 1608 | 16 | 16 | 0 | 0 | 0 | logfile |
✔ | 6oR5 | 9032 | 2022-05-13 | 2019-04-29 | 4.0 | 4.23 | — | 3.9 | 0.008 | 1.12 | 0.0 | 0.05 | 10.85 | 0.00 | 2.245 | 4.84 | 0.00 | 17.3 | 82.4 | 0.3 | -5.53 | 0.76 | 0.79 | — | 3.9 | 0.002 | 0.56 | 0.0 | 0.04 | 7.06 | 0.00 | 2.221 | 3.09 | 0.00 | 12.5 | 87.5 | 0.0 | -0.20 | 1.35 | 0.78 | 0.79 | — | 10364 | 2058 | 1 | 0 | 5 | 0 | 0 | logfile |
✔ | 7PKB | 13467 | 2022-05-14 | 2021-08-25 | 3.2 | 2.68 | 3.08 | 3.1 | 0.008 | 0.90 | 0.0 | 0.14 | 13.28 | 0.01 | 1.950 | 3.97 | 0.00 | 5.1 | 94.8 | 0.1 | -0.98 | 0.72 | 0.85 | 5.32 | 3.1 | 0.003 | 0.68 | 0.0 | 0.14 | 13.58 | 0.00 | 1.970 | 3.10 | 0.00 | 2.4 | 97.6 | 0.0 | -0.14 | 0.59 | 0.73 | 0.86 | 4.45 | 16145 | 1030 | 15 | 0 | 10 | 5 | 7970 | logfile |
✔ | 6SAG | 10130 | 2022-05-12 | 2019-07-16 | 2.0 | 2.11 | 2.01 | 2.1 | 0.004 | 0.65 | 0.0 | 0.04 | 12.99 | 0.00 | 0.351 | 2.79 | 0.00 | 2.6 | 97.4 | 0.0 | -0.33 | 0.58 | 0.86 | 6.64 | 2.1 | 0.004 | 0.63 | 0.0 | 0.04 | 15.40 | 0.01 | 2.054 | 3.11 | 1.17 | 3.1 | 96.9 | 0.0 | 1.56 | 0.73 | 0.60 | 0.89 | 6.90 | 54080 | 6120 | 240 | 120 | 240 | 2840 | 0 | logfile |
✔ | 7oD3 | 12818 | 2022-05-15 | 2021-04-28 | 2.8 | 2.59 | 3.00 | 2.7 | 0.004 | 0.58 | 0.0 | 0.05 | 13.89 | 0.00 | 1.953 | 2.61 | 0.23 | 4.8 | 95.2 | 0.0 | -1.05 | 0.73 | 0.81 | 3.95 | 2.7 | 0.004 | 0.64 | 0.0 | 0.05 | 16.15 | 0.00 | 2.180 | 3.12 | 1.97 | 4.4 | 95.6 | 0.0 | -0.52 | 0.30 | 0.75 | 0.84 | 3.83 | 24222 | 3036 | 6 | 0 | 36 | 0 | 0 | logfile |
✔ | 7RLU | 24547 | 2022-05-14 | 2021-07-26 | 2.9 | 2.95 | 2.85 | 3.0 | 0.011 | 1.27 | 0.0 | 0.07 | 12.84 | 0.01 | 2.582 | 0.33 | 0.31 | 5.3 | 94.0 | 0.7 | -3.29 | 0.73 | 0.82 | 4.31 | 3.0 | 0.003 | 0.58 | 0.0 | 0.04 | 16.91 | 0.00 | 2.265 | 3.14 | 1.24 | 3.7 | 96.3 | 0.0 | 0.18 | 1.64 | 0.76 | 0.88 | 2.94 | 18188 | 2332 | 12 | 0 | 8 | 28 | 0 | logfile |
✔ | 6MRT | 9212 | 2022-05-12 | 2018-10-15 | 2.8 | 2.93 | — | 2.9 | 0.008 | 0.90 | 0.0 | 0.05 | 10.67 | 0.01 | 2.260 | 1.61 | 0.82 | 1.1 | 98.9 | 0.0 | -1.27 | 0.70 | 0.84 | 3.77 | 2.9 | 0.003 | 0.46 | 0.0 | 0.03 | 15.43 | 0.00 | 2.226 | 3.14 | 1.29 | 0.5 | 99.5 | 0.0 | 5.71 | 3.08 | 0.73 | 0.87 | 2.07 | 26868 | 3420 | 12 | 0 | 0 | 0 | 0 | logfile |