Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6CUD	7620	2021-08-09	2018-03-25	3.3	3.61	—	3.5	0.007	1.16	0.0	0.06	12.88	0.02	2.171	6.98	1.47	4.4	95.5	0.1	-3.04	0.71	0.83	1.93	3.5	0.002	0.55	0.0	0.04	13.71	0.00	2.275	3.37	0.42	3.2	96.7	0.1	2.39	1.21	0.73	0.85	1.42	21028	2816	8	0	12	0	0	logfile
✔	7JJo	22357	2021-08-08	2020-07-27	2.6	2.72	—	2.6	0.003	0.46	0.0	0.04	14.20	0.00	2.102	2.87	1.78	2.0	98.0	0.0	-1.12	0.55	0.82	3.47	2.6	0.003	0.52	0.0	0.04	16.72	0.00	2.072	3.38	1.66	1.6	98.4	0.0	1.68	0.86	0.58	0.85	3.32	15641	1002	5	0	1	0	7749	logfile
✔	6ZBJ	11156	2021-08-11	2020-06-08	3.3	4.20	3.47	3.8	0.011	1.04	0.0	0.06	14.14	0.01	2.351	1.38	0.00	0.7	99.3	0.0	-1.34	0.87	0.81	1.60	3.8	0.003	0.48	0.0	0.03	15.18	0.00	2.076	3.39	0.09	0.5	99.5	0.0	4.27	1.33	0.88	0.83	1.22	39212	2334	4	0	0	0	19864	logfile
✔	7B16	11979	2021-08-09	2020-11-23	3.15	3.24	—	3.2	0.010	0.82	0.0	0.05	13.45	0.01	2.239	4.46	0.00	6.1	93.9	0.0	-1.02	0.73	0.85	3.32	3.2	0.014	1.22	3.0	0.04	15.41	0.00	2.301	3.40	0.09	3.9	96.1	0.0	1.36	0.99	0.73	0.87	2.52	21152	2572	8	0	12	0	0	logfile
✔	6oU9	20198	2021-08-08	2019-05-04	3.2	3.62	—	3.6	0.006	0.75	0.0	0.05	12.96	0.01	2.067	4.75	0.00	4.3	95.7	0.0	-3.26	0.65	0.86	3.74	3.6	0.003	0.60	0.0	0.05	15.12	0.01	2.155	3.41	0.32	3.4	96.6	0.0	-1.02	0.38	0.68	0.87	3.43	11269	1473	3	0	0	0	0	logfile
✔	6DZU	8939	2021-08-11	2018-07-05	3.3	3.36	—	3.3	0.012	0.95	0.0	0.11	13.23	0.01	2.165	2.37	4.07	6.0	94.0	0.0	-4.36	0.71	0.84	4.89	3.3	0.003	0.67	0.0	0.10	14.67	0.00	2.038	3.41	0.14	4.0	96.0	0.0	-2.60	0.77	0.72	0.86	4.41	182100	11340	60	0	0	0	89040	logfile
✔	6TSK	10564	2021-08-10	2019-12-20	2.3	2.36	—	2.3	0.012	1.54	24.0	0.11	16.57	0.02	1.535	1.51	2.42	2.9	97.0	0.1	-1.00	0.84	0.94	7.33	2.3	0.003	0.61	0.0	0.05	16.99	0.00	2.005	3.45	1.47	2.4	97.6	0.0	0.53	0.83	0.80	0.91	6.45	33632	4060	12	0	8	964	0	logfile
✔	7oJ5	12938	2021-08-10	2021-05-13	2.4	2.43	—	2.4	0.002	0.53	0.0	0.04	16.61	0.00	2.177	1.84	1.95	1.6	98.4	0.0	-0.94	0.76	0.87	3.97	2.4	0.005	0.85	0.0	0.05	17.00	0.00	2.115	3.46	1.35	2.7	97.3	0.0	0.56	0.34	0.78	0.89	4.45	35323	4416	72	0	48	931	0	logfile
✔	7NRi	12546	2021-08-09	2021-03-03	3.03	3.49	3.11	3.3	0.007	0.64	2.0	0.05	14.47	0.00	1.984	3.80	0.32	6.2	93.7	0.1	-3.46	0.78	0.84	3.97	3.3	0.003	0.52	0.0	0.04	15.49	0.00	2.025	3.46	0.00	4.2	95.8	0.0	-0.33	0.72	0.77	0.87	3.67	23143	1504	6	0	1	0	11351	logfile
✔	6U68	20662	2021-08-08	2019-08-29	4.5	4.54	—	4.5	0.006	0.90	0.0	0.06	4.27	0.00	2.419	0.46	0.00	2.6	97.3	0.1	-3.82	0.71	0.71	—	4.4	0.003	0.74	0.0	0.05	4.30	0.00	2.311	3.47	0.00	7.5	92.5	0.0	-0.48	1.83	0.77	0.81	—	10489	2133	8	0	0	0	0	logfile
✔	6ZGE	11203	2021-08-09	2020-06-18	2.6	2.79	2.72	2.7	0.009	0.91	0.0	0.06	12.46	0.01	2.344	2.20	0.73	4.7	95.2	0.1	-0.97	0.76	0.84	4.43	2.7	0.004	0.67	0.0	0.05	15.15	0.00	2.154	3.47	1.50	4.1	95.9	0.1	-0.45	1.19	0.78	0.86	4.06	26991	3294	39	0	81	48	0	logfile
✔	6YWS	10973	2021-08-20	2020-04-30	2.74	2.83	2.70	2.8	0.016	0.47	0.0	0.03	12.70	0.00	1.426	1.42	0.20	1.7	98.3	0.0	-2.78	0.76	0.86	4.39	2.8	0.004	0.55	0.0	0.04	14.61	0.00	1.821	3.49	1.13	2.1	97.9	0.0	0.72	1.20	0.76	0.87	4.01	223349	8200	51	2820	179	0	97470	logfile
✔	6VPS	21316	2021-08-07	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.89	6.11	2.7	0.002	0.48	0.0	0.03	19.69	0.00	2.391	3.50	1.63	6.9	93.1	0.0	-3.67	1.20	0.47	0.87	6.71	2736	279	9	0	0	0	0	logfile
✔	7BH9	12187	2021-08-07	2021-01-11	2.9	3.58	2.91	3.4	0.007	0.76	0.0	0.05	13.23	0.00	2.021	5.17	0.33	4.9	95.1	0.0	-3.10	0.85	0.88	3.70	3.4	0.002	0.53	0.0	0.04	15.05	0.00	2.181	3.51	0.50	1.9	98.1	0.0	0.89	0.41	0.82	0.86	2.38	5876	730	3	0	4	0	0	logfile
✔	6ZB4	11144	2021-08-09	2020-06-06	3.03	3.12	3.02	3.1	0.006	0.67	0.0	0.05	15.92	0.01	1.814	4.81	3.84	8.2	91.7	0.1	-4.11	0.75	0.83	3.79	3.1	0.003	0.61	0.0	0.04	16.30	0.00	2.124	3.51	0.44	7.1	92.9	0.0	-1.69	1.87	0.76	0.85	3.65	24841	3133	7	0	30	0	0	logfile
✔	6VQi	21351	2021-08-07	2020-02-05	4.3	4.89	—	4.2	0.005	1.14	0.0	0.05	3.90	0.01	2.327	1.95	0.00	1.3	98.2	0.5	2.16	0.56	0.73	—	3.8	0.003	0.58	0.0	0.03	4.23	0.00	2.229	3.52	0.00	5.7	94.2	0.1	2.19	1.39	0.57	0.74	—	5278	1062	8	0	0	0	0	logfile
✔	7RK8	24494	2021-08-25	2021-07-22	2.27	2.34	—	2.3	0.004	0.61	0.0	0.05	14.03	0.00	2.161	3.94	0.00	1.9	98.1	0.0	-0.56	0.76	0.89	5.98	2.3	0.004	0.63	0.0	0.05	15.82	0.00	2.077	3.53	0.94	2.6	97.4	0.0	-0.75	0.33	0.73	0.88	5.80	246720	31020	60	0	0	0	0	logfile
✔	7D60	30586	2021-08-09	2020-09-28	2.61	2.73	—	2.7	0.006	0.89	0.0	0.05	16.44	0.01	2.395	1.56	0.00	2.1	97.9	0.0	-6.95	0.70	0.83	2.76	2.7	0.003	0.60	0.0	0.04	17.60	0.00	2.321	3.54	2.36	2.1	97.9	0.0	0.90	0.52	0.69	0.83	1.99	26664	3168	22	0	55	0	0	logfile
✔	6CoZ	7545	2021-08-07	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.5	0.003	0.85	0.0	0.04	5.26	0.00	2.361	3.54	0.00	11.5	88.5	0.0	-1.90	1.67	0.83	0.78	—	1586	320	2	0	0	0	0	logfile
✔	6RW5	10022	2021-08-11	2019-06-03	3.14	2.26	3.07	2.9	0.022	0.75	0.0	0.08	13.11	0.01	1.422	2.37	0.05	3.0	96.9	0.0	-2.51	0.85	0.84	4.32	2.9	0.003	0.62	0.0	0.04	14.18	0.00	1.767	3.60	0.05	1.9	98.1	0.0	1.31	1.39	0.87	0.87	3.75	137051	6491	51	955	87	61	63716	logfile

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