Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oVH	20212	2022-07-03	2019-05-07	2.6	2.81	2.71	2.8	0.014	1.10	0.0	0.04	17.48	0.01	1.203	1.15	4.55	1.0	99.0	0.0	-6.34	0.75	0.87	4.63	2.8	0.002	0.72	0.0	0.04	18.70	0.00	2.068	2.87	0.19	0.2	99.8	0.0	3.27	0.99	0.77	0.88	3.42	10895	1272	36	0	68	171	0	logfile
✔	6WWZ	21950	2022-07-03	2020-05-09	3.34	3.53	—	3.5	0.014	1.77	0.0	0.09	13.13	0.00	2.318	2.17	0.10	4.4	95.6	0.0	-3.33	0.56	0.77	2.93	3.5	0.004	0.66	0.0	0.04	15.30	0.00	2.193	2.92	0.10	3.2	96.8	0.0	0.27	1.07	0.72	0.86	2.63	9450	1211	6	0	0	0	0	logfile
✔	7QEQ	13937	2022-07-04	2021-12-03	1.9	2.38	1.89	2.1	0.009	0.61	0.0	0.04	12.54	0.00	2.181	2.19	1.18	1.1	98.9	0.0	1.60	0.82	0.90	4.56	2.1	0.003	0.58	0.0	0.04	14.03	0.00	2.247	2.92	1.13	1.8	98.2	0.0	4.07	0.99	0.82	0.92	4.18	19313	2268	36	0	60	305	0	logfile
✔	6i5A	4413	2022-07-02	2018-11-13	2.3	2.34	1.50	2.3	0.012	1.84	1.0	0.10	14.16	0.01	2.431	6.70	0.74	1.3	97.4	1.3	-0.89	0.26	0.84	3.95	2.3	0.003	0.54	0.0	0.04	16.64	0.00	2.349	2.93	4.44	2.0	98.0	0.0	2.46	1.23	0.30	0.88	4.22	1206	153	1	0	0	0	0	logfile
✔	7PY2	13708	2022-07-02	2021-10-08	2.59	2.64	1.53	2.7	0.015	1.83	0.0	0.08	17.26	0.01	2.423	1.71	2.00	9.1	90.9	0.0	-5.22	0.45	0.84	6.05	2.8	0.004	0.86	0.0	0.05	18.18	0.00	2.155	2.93	4.00	5.2	94.8	0.0	-3.95	1.38	0.50	0.88	5.97	2152	316	4	0	0	0	0	logfile
✔	7NPS	12518	2022-07-03	2021-02-28	3.81	3.93	3.82	3.9	0.010	1.15	6.0	0.08	11.02	0.01	2.182	1.23	0.00	2.5	97.5	0.0	-1.44	0.82	0.82	2.59	3.9	0.003	0.60	0.0	0.05	12.93	0.00	1.898	2.93	0.03	2.2	97.8	0.0	-0.04	0.68	0.83	0.83	2.29	55350	3732	9	0	0	0	27681	logfile
✔	5XB1	6714	2022-07-06	2017-03-15	3.0	3.16	2.84	3.1	0.007	0.71	0.0	0.05	10.82	0.00	2.173	4.77	0.00	2.0	98.0	0.0	-6.31	0.80	0.88	4.19	3.1	0.003	0.57	0.0	0.04	18.09	0.00	2.165	2.93	3.48	2.7	97.3	0.0	3.54	0.69	0.80	0.86	2.84	30847	3720	48	0	0	55	0	logfile
✔	7K3W	22658	2022-07-07	2020-09-14	1.36	1.48	—	1.5	0.005	0.76	0.0	0.04	14.50	0.00	1.934	3.63	0.00	1.8	98.2	0.0	3.35	0.73	0.80	9.05	1.5	0.003	0.65	0.0	0.04	14.77	0.00	2.038	2.97	0.00	1.8	98.2	0.0	4.21	0.17	0.75	0.82	9.20	39086	4128	72	0	382	2680	0	logfile
✔	7NKJ	12441	2022-07-07	2021-02-18	2.17	2.16	—	2.1	0.005	0.59	0.0	0.05	16.78	0.00	1.958	2.92	1.05	1.8	98.2	0.1	1.04	0.80	0.89	6.04	2.1	0.004	0.55	0.0	0.04	16.76	0.00	1.766	2.97	1.05	1.6	98.3	0.1	1.18	0.12	0.80	0.90	5.92	45605	2945	20	0	11	516	22478	logfile
✔	7QKW	14055	2022-07-03	2021-12-19	2.32	1.74	2.60	2.3	0.010	1.93	1.0	0.10	13.53	0.01	2.534	0.00	0.00	5.4	94.6	0.0	-2.79	0.41	0.81	7.02	2.3	0.002	0.52	0.0	0.05	16.59	0.00	2.445	2.98	1.09	4.8	95.2	0.0	-2.85	1.38	0.41	0.84	5.96	4707	306	6	0	0	0	2439	logfile
✔	6ZBL	11157	2022-07-07	2020-06-08	3.6	4.39	3.70	4.0	0.014	1.20	0.0	0.07	14.69	0.01	2.400	1.54	0.00	0.7	99.3	0.0	-0.56	0.87	0.79	1.33	4.0	0.003	0.47	0.0	0.03	15.53	0.00	2.015	2.99	0.00	1.0	99.0	0.0	4.19	1.34	0.88	0.82	0.89	39074	2326	4	0	0	0	19788	logfile
✔	7RHX	24470	2022-07-05	2021-07-19	3.23	3.49	3.31	3.4	0.004	0.79	0.0	0.05	20.49	0.01	2.289	1.05	0.00	2.0	98.0	0.0	-0.38	0.75	0.84	2.43	3.4	0.003	0.60	0.0	0.04	22.04	0.00	2.119	3.03	0.00	2.8	97.2	0.0	1.32	1.07	0.76	0.87	1.58	25787	1288	8	168	0	0	12159	logfile
✔	7ABH	11696	2022-07-04	2020-09-07	4.5	4.60	—	4.4	0.003	0.63	0.0	0.05	9.27	0.00	1.529	2.09	0.00	6.0	93.7	0.2	-2.78	0.75	0.77	—	4.4	0.002	0.63	0.0	0.04	9.50	0.00	2.174	3.05	0.00	6.2	93.8	0.0	-0.31	1.29	0.77	0.80	—	17922	3288	16	65	0	0	0	logfile
✔	7BKP	12213	2022-07-03	2021-01-16	2.8	2.78	2.75	2.9	0.009	0.84	0.0	0.05	12.30	0.00	1.824	2.31	0.32	6.5	93.2	0.3	-2.15	0.66	0.84	3.66	2.9	0.002	0.50	0.0	0.04	14.82	0.00	2.143	3.05	1.30	5.3	94.7	0.0	1.43	2.05	0.64	0.86	2.77	12118	689	4	28	3	0	5956	logfile
✔	7MQF	23945	2022-07-05	2021-05-05	2.88	2.74	2.86	2.8	0.006	0.72	0.0	0.06	11.73	0.00	2.175	1.47	0.00	0.5	99.5	0.0	1.24	0.72	0.87	6.16	2.7	0.003	0.48	0.0	0.04	13.44	0.00	2.256	3.06	0.00	1.0	99.0	0.0	1.02	0.44	0.80	0.91	5.71	12288	1608	16	16	0	0	0	logfile
✔	6oR5	9032	2022-07-03	2019-04-29	4.0	4.23	—	3.9	0.008	1.12	0.0	0.05	10.85	0.00	2.245	4.84	0.00	17.3	82.4	0.3	-5.53	0.76	0.79	—	3.9	0.002	0.56	0.0	0.04	7.06	0.00	2.221	3.09	0.00	12.5	87.5	0.0	-0.20	1.35	0.78	0.79	—	10364	2058	1	0	5	0	0	logfile
✔	7PKB	13467	2022-07-04	2021-08-25	3.2	2.68	3.08	3.1	0.008	0.90	0.0	0.14	13.28	0.01	1.950	3.97	0.00	5.1	94.8	0.1	-0.98	0.72	0.85	5.32	3.1	0.003	0.68	0.0	0.14	13.58	0.00	1.970	3.10	0.00	2.4	97.6	0.0	-0.14	0.59	0.73	0.86	4.45	16145	1030	15	0	10	5	7970	logfile
✔	6SAG	10130	2022-07-03	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.004	0.63	0.0	0.04	15.40	0.01	2.054	3.11	1.17	3.1	96.9	0.0	1.56	0.73	0.60	0.89	6.90	54080	6120	240	120	240	2840	0	logfile
✔	7oD3	12818	2022-07-05	2021-04-28	2.8	2.59	3.00	2.7	0.004	0.58	0.0	0.05	13.89	0.00	1.953	2.61	0.23	4.8	95.2	0.0	-1.05	0.73	0.81	3.95	2.7	0.004	0.64	0.0	0.05	16.15	0.00	2.180	3.12	1.97	4.4	95.6	0.0	-0.52	0.30	0.75	0.84	3.83	24222	3036	6	0	36	0	0	logfile
✔	6MRT	9212	2022-07-02	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.46	0.0	0.03	15.43	0.00	2.226	3.14	1.29	0.5	99.5	0.0	5.71	3.08	0.73	0.87	2.07	26868	3420	12	0	0	0	0	logfile

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