Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7M64	23688	2021-12-01	2021-03-25	4.0	4.02	—	4.3	0.008	1.15	0.0	0.07	10.07	0.00	2.451	19.77	0.00	8.7	91.3	0.0	-3.84	0.52	0.75	—	4.3	0.003	0.84	0.0	0.04	11.44	0.00	2.251	4.52	0.48	5.7	94.3	0.0	-4.01	1.14	0.51	0.73	—	1850	250	10	0	10	0	0	logfile
✘	6WQK	21871	2021-12-01	2020-04-29	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-5.40	—	—	4.99	3.3	0.004	0.72	0.0	0.05	13.47	0.00	2.242	4.54	0.00	4.4	95.6	0.0	-4.42	—	0.48	0.86	5.39	2070	285	5	0	0	0	0	logfile
✔	7AUE	11927	2021-12-01	2020-11-02	2.97	2.67	—	2.8	0.006	0.79	2.0	0.05	13.82	0.01	2.077	1.67	0.11	4.2	95.8	0.0	-4.47	0.62	0.84	3.98	2.8	0.003	0.59	2.0	0.04	16.60	0.00	2.223	4.55	1.28	3.2	96.8	0.0	-0.78	1.79	0.63	0.85	3.24	8755	1129	8	0	5	1	0	logfile
✔	6V3H	21037	2021-12-01	2019-11-25	3.5	3.58	—	3.6	0.009	1.24	1.0	0.07	12.24	0.01	2.275	3.03	0.76	2.9	97.0	0.1	0.65	0.66	0.84	2.86	3.5	0.003	0.67	0.0	0.04	14.44	0.00	2.145	4.59	0.28	3.8	96.2	0.0	1.31	1.16	0.66	0.84	1.87	9926	1232	8	0	21	0	0	logfile
✔	7RMH	24570	2021-12-01	2021-07-27	3.1	4.02	3.03	3.9	0.004	0.75	0.0	0.05	13.42	0.01	2.290	2.56	0.00	4.1	95.9	0.0	-1.32	0.74	0.80	2.69	3.9	0.003	0.55	0.0	0.04	15.08	0.00	2.218	4.64	0.00	3.2	96.7	0.1	0.64	0.54	0.62	0.57	2.32	7434	986	6	0	1	0	0	logfile
✔	7EW3	31346	2021-12-01	2021-05-24	3.1	3.34	—	3.4	0.004	0.49	0.0	0.04	14.15	0.00	2.274	4.63	0.00	1.4	98.6	0.0	1.36	0.66	0.76	2.23	3.4	0.003	0.55	0.0	0.04	15.66	0.00	2.098	4.68	0.20	1.9	98.1	0.0	1.26	1.36	0.64	0.77	2.46	9072	1149	6	0	5	0	0	logfile
✔	6XLA	22237	2021-12-01	2020-06-28	3.1	3.41	—	3.3	0.005	0.65	0.0	0.04	19.84	0.00	2.276	3.37	0.00	0.2	99.8	0.0	-2.59	0.78	0.84	3.37	3.3	0.003	0.54	0.0	0.04	20.69	0.00	2.128	4.72	0.41	3.0	97.0	0.0	-0.29	1.32	0.79	0.86	3.00	5403	536	6	46	2	0	0	logfile
✔	6XYP	10651	2021-12-01	2020-01-30	3.29	3.37	3.03	3.4	0.008	0.64	0.0	0.05	13.98	0.00	2.151	8.09	0.00	2.8	97.2	0.0	-5.04	0.47	0.83	4.49	3.4	0.006	0.62	0.0	0.05	15.80	0.00	2.188	4.84	0.20	2.4	97.6	0.0	-3.45	0.35	0.48	0.85	5.05	4955	725	10	0	0	0	0	logfile
✔	6AYG	7020	2021-12-02	2017-09-08	4.65	4.76	—	4.6	0.013	1.56	0.0	0.07	11.75	0.01	2.180	19.94	1.09	7.7	91.9	0.5	-4.34	0.84	0.80	—	4.6	0.003	0.61	0.0	0.04	10.63	0.00	2.136	4.85	0.00	3.5	96.3	0.2	1.72	2.13	0.84	0.79	—	10456	1756	4	0	0	0	0	logfile
✔	6Y6K	10706	2021-12-02	2020-02-26	3.78	3.86	—	3.8	0.012	0.99	1.0	0.06	16.00	0.01	1.889	11.32	2.36	12.5	87.4	0.2	-5.70	0.75	0.88	2.58	3.8	0.004	0.66	0.0	0.04	16.81	0.00	1.946	4.88	0.35	7.1	92.9	0.0	-2.84	1.01	0.77	0.87	2.25	10351	1299	1	0	1	0	0	logfile
✔	7JZU	22574	2021-12-01	2020-09-02	3.1	3.26	3.10	3.3	0.015	1.33	0.0	0.08	9.63	0.01	2.509	0.52	0.00	3.3	96.7	0.0	0.23	0.69	0.76	4.15	3.3	0.003	0.59	0.0	0.04	14.23	0.00	2.252	4.93	0.00	3.3	96.7	0.0	0.46	1.61	0.70	0.80	4.31	1987	248	3	0	3	0	0	logfile
✔	7MN6	23917	2021-12-01	2021-04-30	3.09	3.68	3.18	3.5	0.012	1.50	0.0	0.08	11.06	0.01	2.392	0.37	0.00	3.5	96.4	0.2	-0.15	0.85	0.85	3.26	3.5	0.003	0.60	0.0	0.04	13.54	0.00	2.251	4.94	0.19	3.6	96.3	0.1	0.21	1.09	0.85	0.86	3.16	9649	1227	8	0	13	0	0	logfile
✔	7K0Q	22608	2021-12-01	2020-09-04	3.3	3.61	—	3.5	0.007	0.77	0.0	0.05	12.67	0.00	2.116	5.18	0.00	3.3	96.7	0.0	0.45	0.70	0.85	3.35	3.5	0.002	0.50	0.0	0.04	14.30	0.00	2.194	4.96	0.21	2.5	97.5	0.0	1.17	1.46	0.73	0.87	2.87	8778	1107	5	0	2	0	0	logfile
✔	6KZP	0792	2021-12-01	2019-09-25	3.1	2.67	—	3.0	0.013	1.45	1.0	0.08	14.32	0.01	2.390	10.39	2.44	3.3	96.4	0.3	-4.53	0.59	0.81	3.72	3.1	0.003	0.61	0.0	0.04	16.37	0.00	2.316	4.99	0.11	2.9	97.1	0.0	1.33	0.68	0.60	0.83	2.38	8557	1014	1	0	18	0	0	logfile
✔	7LCJ	23275	2021-12-01	2021-01-11	2.82	3.02	2.78	3.1	0.010	1.51	3.0	0.24	15.14	0.01	2.216	8.57	1.16	3.9	96.1	0.0	0.54	0.46	0.80	2.75	3.1	0.004	0.60	0.0	0.04	17.06	0.00	2.254	4.99	1.16	1.8	98.2	0.0	1.29	1.69	0.49	0.82	3.04	3264	390	1	0	1	17	0	logfile
✔	7LKF	23405	2021-12-01	2021-02-02	2.9	2.97	—	3.0	0.004	0.66	0.0	0.05	12.84	0.01	2.101	5.26	0.00	4.6	95.4	0.0	-0.59	0.70	0.83	4.15	3.0	0.003	0.61	0.0	0.04	16.60	0.01	2.228	5.01	1.76	3.0	97.0	0.0	-0.15	1.15	0.72	0.86	3.97	4139	511	4	0	2	0	0	logfile
✔	6YE4	10789	2021-12-01	2020-03-24	3.2	3.33	3.07	3.3	0.026	1.69	0.0	0.10	14.61	0.01	2.373	3.02	0.00	0.9	99.1	0.0	-3.36	0.73	0.88	2.50	3.3	0.003	0.52	0.0	0.03	16.50	0.00	2.347	5.02	0.22	2.4	97.6	0.0	3.50	0.93	0.67	0.87	1.40	9140	1180	10	0	5	0	0	logfile
✔	6E9E	9013	2021-12-01	2018-08-01	3.4	3.44	3.75	3.5	0.006	0.73	0.0	0.04	10.72	0.00	2.037	3.80	0.26	4.1	95.9	0.0	-4.95	0.77	0.82	4.40	3.4	0.003	0.57	0.0	0.04	14.04	0.00	2.222	5.07	0.39	3.1	96.9	0.0	0.41	1.09	0.79	0.90	3.59	8163	863	3	51	1	0	0	logfile
✔	6TQE	10549	2021-12-01	2019-12-16	4.3	4.14	—	4.2	0.007	1.04	0.0	0.06	14.59	0.01	2.077	2.78	0.76	8.6	91.4	0.0	-6.13	0.76	0.89	—	4.2	0.002	0.61	0.0	0.04	13.71	0.00	2.005	5.11	0.19	5.1	94.9	0.0	-2.70	1.27	0.75	0.88	—	10076	1268	4	0	4	0	0	logfile
✔	7LCK	23276	2021-12-01	2021-01-11	3.24	3.84	3.15	3.6	0.007	1.42	4.0	0.24	15.83	0.01	2.160	7.64	1.16	6.7	93.3	0.0	-0.93	0.69	0.78	2.21	3.7	0.003	0.67	0.0	0.04	16.53	0.00	2.249	5.14	0.29	3.6	96.4	0.0	0.85	0.56	0.66	0.79	2.04	3258	390	1	0	1	11	0	logfile

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