Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZG7	14705	2022-12-20	2022-04-02	1.77	1.79	1.79	1.8	0.004	0.74	0.0	0.04	14.44	0.01	1.952	3.40	0.00	1.8	98.2	0.0	3.49	0.77	0.86	9.05	1.8	0.003	0.60	0.0	0.04	15.37	0.00	2.034	3.72	0.37	1.8	98.2	0.0	5.20	0.71	0.79	0.88	9.05	39086	4128	72	0	382	2680	0	logfile
✔	8DWG	27753	2022-12-12	2022-08-01	2.71	2.08	2.72	1.8	0.006	0.64	0.0	0.05	12.65	0.00	2.106	6.99	0.00	4.5	95.5	0.0	-1.14	0.78	0.81	4.92	1.8	0.004	0.59	0.0	0.04	15.14	0.00	2.107	6.25	1.52	4.3	95.7	0.0	0.76	0.32	0.80	0.84	3.66	8350	1101	7	0	1	0	0	logfile
✔	7C7S	30301	2022-12-12	2020-05-26	2.9	2.38	—	1.8	0.006	0.77	0.0	0.14	13.76	0.01	2.153	7.95	0.00	3.7	96.3	0.0	-2.62	0.83	0.80	2.82	1.8	0.003	0.72	0.0	0.04	16.01	0.00	2.176	9.78	3.05	4.1	95.9	0.0	-0.26	0.58	0.85	0.83	2.65	10915	1355	4	0	9	0	0	logfile
✔	7N1X	24126	2022-12-15	2021-05-28	4.0	2.34	—	1.8	0.013	1.88	13.0	0.14	14.66	0.01	1.484	10.07	1.97	8.1	91.3	0.6	-2.39	0.80	0.69	—	1.8	0.004	0.81	0.0	0.05	16.23	0.00	2.143	15.62	0.63	5.4	94.6	0.0	-1.10	1.09	0.80	0.69	—	26810	3257	35	0	95	0	0	logfile
✔	7XA3	33086	2022-12-12	2022-03-17	2.9	2.18	—	2.1	0.005	0.85	0.0	0.05	7.87	0.01	2.250	4.34	0.00	2.5	97.5	0.0	0.60	0.75	0.74	3.21	1.8	0.003	0.63	0.0	0.04	14.26	0.00	2.179	9.36	2.19	3.2	96.8	0.0	1.58	0.59	0.77	0.78	2.64	9591	1220	6	0	0	0	0	logfile
✔	7SQG	25384	2022-12-11	2021-11-05	2.6	2.14	—	1.9	0.004	0.56	0.0	0.05	14.80	0.00	2.423	3.58	0.00	3.0	97.0	0.0	1.39	0.75	0.77	3.39	1.8	0.005	0.64	0.0	0.05	18.67	0.00	2.092	8.16	1.16	4.0	96.0	0.0	1.64	0.97	0.81	0.83	3.46	6630	810	6	0	12	0	0	logfile
✔	7T9i	25758	2022-12-15	2021-12-19	2.9	2.43	—	1.9	0.005	0.91	1.0	0.05	12.72	0.01	2.016	3.34	0.62	3.6	96.4	0.0	-0.16	0.69	0.63	2.32	1.8	0.003	0.64	0.0	0.04	15.04	0.00	1.919	9.48	2.73	5.1	94.9	0.0	-0.30	1.14	0.74	0.72	2.53	23529	1532	11	0	8	0	11557	logfile
✔	7X2A	32963	2022-12-16	2022-02-25	2.49	2.71	—	1.8	0.013	1.51	6.0	0.11	12.93	0.00	1.682	7.02	6.68	2.2	97.6	0.2	2.33	0.57	0.42	1.04	1.8	0.006	0.86	0.0	0.05	15.39	0.01	1.938	15.62	2.61	4.1	95.8	0.1	-0.35	1.80	0.83	0.80	2.16	26800	3486	5	0	0	0	0	logfile
✔	8AG3	15414	2022-12-11	2022-07-19	3.47	2.17	3.26	2.0	0.002	0.60	0.0	0.04	17.16	0.01	2.143	8.90	0.00	6.6	93.4	0.0	-1.45	0.61	0.73	3.03	1.8	0.003	0.60	0.0	0.04	17.21	0.01	2.117	11.17	1.30	8.5	91.5	0.0	-1.16	0.41	0.63	0.77	3.15	2632	322	2	0	0	0	0	logfile
✔	7TBG	25798	2022-12-15	2021-12-22	2.5	2.10	2.44	1.8	0.006	0.76	0.0	0.05	13.03	0.01	2.268	1.99	0.57	3.2	96.8	0.0	0.60	0.75	0.79	4.65	1.8	0.004	0.58	0.0	0.04	16.02	0.00	2.091	5.00	1.60	2.1	97.9	0.0	2.32	1.13	0.77	0.82	3.72	19679	1190	6	0	5	20	9858	logfile
✔	8CZo	27100	2022-12-19	2022-05-25	4.3	2.75	4.13	2.2	0.004	0.75	0.0	0.04	16.53	0.00	2.084	18.96	0.00	10.9	89.1	0.0	-2.32	0.50	0.66	—	1.8	0.004	0.88	0.0	0.05	14.15	0.00	1.981	16.17	0.03	9.6	90.4	0.0	-0.67	1.45	0.50	0.65	—	34518	4268	44	0	0	0	0	logfile
✔	7PF1	13364	2022-12-21	2021-08-11	2.1	1.83	—	2.0	0.020	1.66	0.0	0.12	14.32	0.01	1.766	1.61	0.65	1.7	98.3	0.0	1.14	0.71	0.75	6.05	1.8	0.003	0.56	0.0	0.04	17.16	0.00	1.943	11.41	0.05	1.7	98.3	0.0	5.04	1.38	0.78	0.82	7.01	41646	4176	72	0	263	7207	0	logfile
✔	7VD9	31911	2022-12-13	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	8.15	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.004	0.67	0.0	0.05	17.73	0.01	2.197	9.18	3.08	5.1	94.9	0.0	-0.55	0.29	0.59	0.74	3.69	16426	1991	8	0	8	0	0	logfile
✔	7U67	26362	2022-12-22	2022-03-03	2.5	2.10	2.53	1.8	0.005	0.75	0.0	0.05	17.77	0.00	2.161	3.35	0.91	2.4	97.6	0.0	-0.22	0.79	0.79	3.83	1.8	0.004	0.58	0.0	0.04	17.82	0.00	2.014	4.39	1.64	3.1	96.9	0.0	0.87	0.40	0.83	0.83	3.39	26778	3360	18	0	12	0	0	logfile
✔	7N1Y	24127	2022-12-15	2021-05-28	4.3	2.48	—	2.0	0.015	2.09	23.0	0.15	15.16	0.01	1.099	10.91	1.91	8.5	90.8	0.6	-2.82	0.78	0.64	—	1.8	0.007	0.98	0.0	0.06	14.76	0.01	1.905	23.67	0.04	9.7	90.3	0.0	-2.27	0.72	0.79	0.65	—	26636	3242	31	0	91	0	0	logfile
✔	7SX3	25492	2022-12-20	2021-11-22	3.1	2.52	3.30	1.7	0.004	0.66	0.0	0.04	14.42	0.01	2.199	3.25	0.00	2.8	97.2	0.0	0.09	0.73	0.81	2.40	1.8	0.002	0.61	0.0	0.04	16.06	0.00	2.126	5.88	0.22	2.0	98.0	0.0	1.92	0.44	0.74	0.84	1.75	37959	4608	6	0	85	0	0	logfile
✔	7WiG	32529	2022-12-12	2022-01-03	2.7	2.14	—	1.8	0.006	0.75	0.0	0.05	13.13	0.01	2.192	6.98	0.00	2.0	98.0	0.0	1.11	0.78	0.77	3.19	1.8	0.003	0.92	0.0	0.04	15.47	0.00	2.168	5.96	1.23	2.1	97.9	0.0	1.38	0.33	0.79	0.80	3.05	8931	1139	6	0	1	0	0	logfile
✔	7UFM	26477	2022-12-19	2022-03-22	3.9	2.97	4.04	1.8	0.009	1.77	14.0	0.08	22.53	0.01	1.075	9.26	24.41	11.0	89.0	0.0	-4.66	0.68	0.65	0.50	1.8	0.004	1.00	0.0	0.05	19.40	0.01	2.095	21.80	0.67	8.4	91.6	0.0	-1.83	1.02	0.69	0.67	0.62	36392	4354	30	72	14	0	0	logfile
✔	7M3G	23654	2022-12-13	2021-03-18	2.5	2.29	—	1.8	0.007	0.95	14.0	0.06	16.94	0.01	2.281	2.29	0.93	3.0	97.0	0.0	-2.02	0.84	0.85	3.70	1.8	0.003	0.58	14.0	0.04	17.38	0.00	2.173	4.27	2.15	3.5	96.5	0.0	-0.13	0.32	0.85	0.87	3.50	13298	1627	11	0	41	0	0	logfile
✔	7N8o	24239	2022-12-11	2021-06-15	1.93	1.73	—	1.9	0.024	2.36	0.0	0.13	20.20	0.01	1.522	14.96	1.91	3.0	96.9	0.1	0.75	0.73	0.75	5.48	1.8	0.004	0.76	0.0	0.05	18.62	0.01	2.011	12.03	1.57	2.8	97.2	0.0	1.10	0.35	0.75	0.77	5.40	54656	5544	113	0	228	1236	0	logfile

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