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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8SPo | 40680 | 2024-03-21 | 2023-05-03 | 2.98 | 2.34 | 3.17 | 2.1 | 0.004 | 0.60 | 0.0 | 0.26 | 18.84 | 0.00 | 0.334 | 11.05 | 0.00 | 6.0 | 94.0 | 0.0 | -1.15 | 0.46 | 0.30 | 0.19 | 1.6 | 0.004 | 0.72 | 0.0 | 0.04 | 18.88 | 0.00 | 1.817 | 12.21 | 2.22 | 6.6 | 93.4 | 0.0 | -1.13 | 1.34 | 0.57 | 0.49 | 1.24 | 31307 | 3428 | 22 | 154 | 6 | 0 | 0 | logfile |
✔ | 7SiL | 25143 | 2024-03-15 | 2021-10-14 | 2.7 | 1.97 | — | 1.5 | 0.004 | 0.70 | 0.0 | 0.05 | 13.55 | 0.00 | 2.160 | 6.65 | 0.15 | 2.1 | 97.9 | 0.0 | 0.60 | 0.75 | 0.72 | 3.10 | 1.6 | 0.003 | 0.57 | 0.0 | 0.04 | 15.34 | 0.00 | 2.184 | 8.01 | 1.99 | 2.9 | 97.1 | 0.0 | 0.56 | 0.39 | 0.77 | 0.78 | 2.96 | 12924 | 1564 | 8 | 0 | 34 | 0 | 0 | logfile |
✔ | 8D33 | 27154 | 2024-03-16 | 2022-05-31 | 2.46 | 2.01 | 2.48 | 1.7 | 0.003 | 0.55 | 0.0 | 0.04 | 13.19 | 0.00 | 2.091 | 4.01 | 0.39 | 3.5 | 96.5 | 0.1 | 0.90 | 0.73 | 0.78 | 3.10 | 1.6 | 0.003 | 0.61 | 0.0 | 0.04 | 18.11 | 0.00 | 2.153 | 7.45 | 2.91 | 3.1 | 96.9 | 0.1 | 0.65 | 1.32 | 0.73 | 0.79 | 2.91 | 15272 | 1784 | 6 | 46 | 2 | 0 | 0 | logfile |
✔ | 8CPU | 16786 | 2024-03-23 | 2023-03-03 | 1.76 | 1.54 | 1.80 | 1.6 | 0.004 | 0.71 | 0.0 | 0.05 | 14.91 | 0.01 | 1.976 | 4.95 | 0.00 | 1.0 | 99.0 | 0.0 | 2.29 | 0.71 | 0.77 | 8.55 | 1.6 | 0.003 | 0.53 | 0.0 | 0.04 | 15.47 | 0.00 | 2.115 | 4.47 | 0.30 | 1.8 | 98.2 | 0.0 | 4.56 | 0.31 | 0.73 | 0.80 | 8.29 | 35823 | 4152 | 72 | 0 | 38 | 1705 | 0 | logfile |
✔ | 7UX1 | 26845 | 2024-03-21 | 2022-05-04 | 3.48 | 2.70 | 3.65 | 2.1 | 0.003 | 0.56 | 0.0 | 0.04 | 12.46 | 0.00 | 2.260 | 6.32 | 0.00 | 2.7 | 97.3 | 0.0 | 3.19 | 0.76 | 0.72 | 1.53 | 1.6 | 0.004 | 0.60 | 0.0 | 0.04 | 13.43 | 0.00 | 1.976 | 8.13 | 4.79 | 3.6 | 96.4 | 0.0 | 1.88 | 0.44 | 0.77 | 0.77 | 1.53 | 28931 | 4991 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UTZ | 26795 | 2024-03-19 | 2022-04-28 | 2.4 | 2.07 | — | 2.4 | 0.004 | 0.69 | 0.0 | 0.04 | 12.46 | 0.01 | 2.137 | 3.96 | 0.08 | 3.0 | 97.0 | 0.0 | -0.05 | 0.66 | 0.68 | 3.51 | 1.6 | 0.003 | 0.58 | 0.0 | 0.04 | 15.04 | 0.00 | 1.933 | 9.01 | 1.71 | 4.0 | 96.0 | 0.0 | -0.22 | 0.77 | 0.72 | 0.76 | 3.60 | 23679 | 1536 | 10 | 0 | 8 | 0 | 11632 | logfile |
✔ | 7o6E | 12738 | 2024-03-23 | 2021-04-10 | 2.1 | 1.78 | 2.15 | 1.6 | 0.017 | 1.10 | 0.0 | 0.07 | 18.13 | 0.01 | 2.110 | 3.49 | 0.00 | 2.3 | 97.7 | 0.0 | 2.10 | 0.87 | 0.88 | 6.02 | 1.6 | 0.003 | 0.47 | 0.0 | 0.03 | 18.19 | 0.00 | 2.218 | 3.52 | 0.58 | 0.5 | 99.5 | 0.0 | 4.44 | 0.29 | 0.88 | 0.89 | 5.30 | 35304 | 4248 | 48 | 0 | 0 | 1392 | 0 | logfile |
✔ | 8T4S | 41039 | 2024-03-16 | 2023-06-09 | 2.6 | 2.55 | — | 1.7 | 0.005 | 0.70 | 0.0 | 0.05 | 23.99 | 0.01 | 1.654 | 12.19 | 3.03 | 4.5 | 95.1 | 0.4 | -0.03 | 0.89 | 0.87 | 3.39 | 1.6 | 0.005 | 0.65 | 0.0 | 0.04 | 23.46 | 0.01 | 1.847 | 9.17 | 2.84 | 4.4 | 95.3 | 0.3 | 0.19 | 1.11 | 0.89 | 0.87 | 3.30 | 74894 | 4895 | 42 | 1671 | 100 | 4 | 0 | logfile |
✔ | 8EN7 | 28269 | 2024-03-16 | 2022-09-28 | 1.68 | 1.48 | 1.71 | 1.6 | 0.012 | 1.29 | 0.0 | 0.07 | 15.67 | 0.01 | 0.731 | 8.76 | 1.27 | 1.2 | 98.8 | 0.0 | 2.40 | 0.61 | 0.75 | 8.54 | 1.6 | 0.002 | 0.54 | 0.0 | 0.04 | 15.27 | 0.00 | 2.235 | 4.30 | 0.63 | 1.2 | 98.8 | 0.0 | 5.30 | 0.41 | 0.75 | 0.85 | 7.89 | 37614 | 4128 | 54 | 0 | 6 | 2544 | 0 | logfile |
✔ | 7RYF | 24738 | 2024-03-18 | 2021-08-25 | 2.65 | 2.01 | — | 2.3 | 0.006 | 0.61 | 0.0 | 0.07 | 22.82 | 0.02 | 1.764 | 4.27 | 0.02 | 2.5 | 97.4 | 0.1 | 1.04 | 0.76 | 0.73 | 2.78 | 1.6 | 0.004 | 0.75 | 0.0 | 0.05 | 22.88 | 0.01 | 1.795 | 6.77 | 4.16 | 2.9 | 97.1 | 0.1 | 0.26 | 0.35 | 0.79 | 0.76 | 2.63 | 137516 | 5497 | 55 | 4408 | 8 | 0 | 0 | logfile |
✔ | 8J97 | 36090 | 2024-03-10 | 2023-05-02 | 3.2 | 2.37 | 3.18 | 1.6 | 0.007 | 0.92 | 1.0 | 0.05 | 13.20 | 0.01 | 2.266 | 9.42 | 0.28 | 5.8 | 94.2 | 0.0 | -1.02 | 0.73 | 0.71 | 3.94 | 1.6 | 0.004 | 0.65 | 0.0 | 0.05 | 14.39 | 0.00 | 2.201 | 11.06 | 2.54 | 5.4 | 94.6 | 0.0 | -0.42 | 0.42 | 0.73 | 0.71 | 2.75 | 3863 | 544 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M4X | 23669 | 2024-03-19 | 2021-03-22 | 2.66 | 1.75 | — | 1.6 | 0.006 | 0.55 | 0.0 | 0.03 | 23.02 | 0.01 | 1.789 | 3.62 | 0.00 | 2.5 | 97.4 | 0.1 | 1.32 | 0.77 | 0.73 | 3.46 | 1.6 | 0.003 | 0.64 | 0.0 | 0.04 | 22.95 | 0.01 | 1.813 | 5.36 | 2.18 | 2.9 | 97.0 | 0.1 | 0.56 | 0.34 | 0.79 | 0.76 | 3.30 | 139446 | 5528 | 73 | 4453 | 194 | 552 | 0 | logfile |
✔ | 7XJG | 33226 | 2024-03-15 | 2022-04-17 | 2.51 | 2.02 | 2.63 | 1.6 | 0.005 | 0.71 | 0.0 | 0.05 | 24.50 | 0.01 | 1.962 | 7.64 | 3.44 | 4.1 | 95.9 | 0.0 | -0.23 | 0.76 | 0.76 | 2.80 | 1.6 | 0.004 | 0.59 | 0.0 | 0.04 | 23.94 | 0.00 | 2.108 | 7.31 | 5.53 | 4.3 | 95.7 | 0.0 | 0.45 | 0.24 | 0.79 | 0.80 | 2.70 | 13167 | 1066 | 12 | 216 | 2 | 0 | 0 | logfile |
✔ | 7M4U | 23666 | 2024-03-10 | 2021-03-22 | 2.71 | 1.78 | — | 1.6 | 0.006 | 0.58 | 2.0 | 0.04 | 22.58 | 0.02 | 1.771 | 4.42 | 0.20 | 3.1 | 96.7 | 0.2 | 1.08 | 0.79 | 0.76 | 3.70 | 1.6 | 0.003 | 0.67 | 0.0 | 0.04 | 22.64 | 0.01 | 1.830 | 6.01 | 3.02 | 3.2 | 96.5 | 0.2 | 0.92 | 1.72 | 0.82 | 0.80 | 3.49 | 51764 | 2386 | 27 | 1528 | 84 | 191 | 0 | logfile |
✔ | 8FKV | 29258 | 2024-03-25 | 2022-12-21 | 2.47 | 2.71 | 2.57 | 2.7 | 0.003 | 0.53 | 0.0 | 0.03 | 19.43 | 0.00 | 1.957 | 1.78 | 0.00 | 1.1 | 98.9 | 0.0 | 2.08 | 0.80 | 0.83 | 3.64 | 1.6 | 0.004 | 0.55 | 0.0 | 0.04 | 20.03 | 0.00 | 1.928 | 5.05 | 1.50 | 1.8 | 98.2 | 0.0 | 1.79 | 0.42 | 0.82 | 0.87 | 3.30 | 148975 | 12248 | 71 | 2435 | 70 | 0 | 0 | logfile |
✔ | 8BPA | 16147 | 2024-03-15 | 2022-11-16 | 3.7 | 2.50 | 3.80 | 1.6 | 0.005 | 0.85 | 0.0 | 0.05 | 18.50 | 0.01 | 2.127 | 18.60 | 0.97 | 4.0 | 96.0 | 0.0 | 0.00 | 0.69 | 0.65 | 0.97 | 1.6 | 0.003 | 0.73 | 0.0 | 0.04 | 18.91 | 0.00 | 2.189 | 14.48 | 3.36 | 4.0 | 96.0 | 0.0 | 0.58 | 1.20 | 0.69 | 0.66 | 1.06 | 10393 | 1280 | 6 | 0 | 7 | 0 | 0 | logfile |
✔ | 8oM9 | 16971 | 2024-03-16 | 2023-03-31 | 3.32 | 2.45 | 3.31 | 2.0 | 0.008 | 1.29 | 3.0 | 0.09 | 18.88 | 0.00 | 2.025 | 25.29 | 2.76 | 6.3 | 93.7 | 0.0 | -1.44 | 0.71 | 0.73 | 0.58 | 1.6 | 0.003 | 0.67 | 0.0 | 0.04 | 19.40 | 0.00 | 1.846 | 20.13 | 4.43 | 5.3 | 94.7 | 0.0 | -0.78 | 0.46 | 0.68 | 0.66 | 0.58 | 13314 | 1548 | 6 | 44 | 4 | 0 | 0 | logfile |
✔ | 7TZC | 26205 | 2024-03-02 | 2022-02-15 | 2.45 | 2.78 | 2.63 | 1.7 | 0.003 | 0.56 | 0.0 | 0.04 | 11.40 | 0.00 | 2.154 | 5.22 | 1.90 | 2.5 | 97.5 | 0.0 | 1.19 | 0.89 | 0.84 | 4.51 | 1.7 | 0.003 | 0.58 | 1.0 | 0.04 | 12.78 | 0.00 | 2.153 | 7.97 | 0.94 | 2.8 | 97.2 | 0.0 | 1.66 | 0.90 | 0.89 | 0.87 | 3.78 | 149472 | 18640 | 20 | 0 | 48 | 0 | 0 | logfile |
✔ | 7TU5 | 26126 | 2024-03-23 | 2022-02-02 | 2.1 | 1.97 | 2.06 | 1.8 | 0.009 | 0.85 | 6.0 | 0.06 | 15.88 | 0.01 | 1.910 | 4.33 | 1.54 | 1.4 | 98.6 | 0.0 | 0.64 | 0.84 | 0.82 | 4.27 | 1.7 | 0.005 | 0.54 | 0.0 | 0.04 | 16.45 | 0.00 | 1.934 | 5.52 | 2.52 | 1.3 | 98.6 | 0.1 | 1.75 | 0.78 | 0.87 | 0.87 | 5.13 | 19656 | 2574 | 18 | 0 | 6 | 6 | 0 | logfile |
✔ | 7MW6 | 24064 | 2024-03-23 | 2021-05-15 | 3.22 | 2.55 | — | 1.7 | 0.005 | 0.84 | 1.0 | 0.09 | 16.60 | 0.01 | 1.556 | 11.05 | 0.13 | 5.1 | 94.2 | 0.7 | -1.15 | 0.80 | 0.77 | 2.91 | 1.7 | 0.004 | 0.73 | 0.0 | 0.05 | 14.33 | 0.01 | 2.107 | 11.68 | 1.39 | 5.7 | 93.8 | 0.6 | -0.53 | 0.44 | 0.84 | 0.84 | 2.85 | 35247 | 4446 | 45 | 0 | 87 | 0 | 0 | logfile |