Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Xi8	22191	2022-07-03	2020-06-19	3.64	2.63	3.78	2.0	0.010	1.69	4.0	0.11	15.14	0.01	1.333	6.79	0.77	9.0	91.0	0.0	-4.62	0.66	0.54	0.71	1.9	0.006	0.99	0.0	0.05	17.21	0.01	2.201	19.25	0.97	9.0	91.0	0.0	-2.46	1.27	0.69	0.64	0.82	5022	636	4	0	2	0	0	logfile
✔	7N1U	24123	2022-07-05	2021-05-28	3.14	2.62	—	1.9	0.013	1.75	7.0	0.13	14.19	0.01	2.003	6.76	1.56	6.1	93.7	0.3	-1.65	0.83	0.80	3.13	1.9	0.004	0.76	0.0	0.05	15.84	0.01	2.016	11.63	0.25	4.0	96.0	0.0	-0.09	0.66	0.84	0.83	2.29	26619	3225	39	0	99	0	0	logfile
✔	6TAX	10429	2022-07-07	2019-10-31	3.2	2.63	—	1.9	0.009	1.13	0.0	0.06	11.18	0.01	2.065	5.52	0.46	9.5	90.3	0.2	-4.10	0.88	0.80	3.18	1.9	0.009	0.88	1.0	0.04	13.78	0.01	1.933	11.96	0.08	8.2	91.8	0.0	-0.33	1.90	0.89	0.82	2.08	35235	4349	1	0	71	0	0	logfile
✔	6WWU	21948	2022-07-03	2020-05-09	2.7	2.08	2.76	1.9	0.011	1.26	1.0	0.06	16.22	0.02	2.072	6.98	2.78	5.8	94.0	0.2	-3.98	0.60	0.76	4.02	1.9	0.004	0.64	0.0	0.04	17.69	0.00	1.980	7.35	2.30	3.6	96.4	0.1	-0.47	0.68	0.61	0.82	4.01	9688	1216	6	1	4	0	0	logfile
✔	7TU6	26127	2022-07-07	2022-02-02	2.7	2.11	2.73	2.0	0.007	0.79	6.0	0.06	13.43	0.01	1.892	3.44	0.62	3.0	97.0	0.0	0.38	0.77	0.76	2.74	1.9	0.004	0.55	0.0	0.04	17.02	0.00	1.966	5.48	1.65	3.5	96.5	0.0	0.84	0.49	0.82	0.82	3.29	20028	2580	12	0	18	0	0	logfile
✔	7o6Q	12740	2022-07-03	2021-04-12	1.88	2.21	—	1.9	0.010	0.71	0.0	0.05	12.80	0.01	2.115	4.83	1.25	3.2	96.8	0.0	-1.61	0.88	0.85	7.59	1.9	0.002	0.47	0.0	0.04	14.46	0.00	2.188	5.16	1.63	0.8	99.2	0.0	3.35	0.36	0.90	0.90	6.06	7999	997	8	0	0	399	0	logfile
✔	7V9L	31824	2022-07-03	2021-08-26	2.6	2.13	—	1.8	0.004	0.69	0.0	0.05	13.08	0.01	2.120	4.19	0.00	3.8	96.2	0.0	0.00	0.67	0.70	3.73	1.9	0.003	0.59	0.0	0.04	15.79	0.00	2.135	10.88	1.38	2.2	97.8	0.0	0.96	0.50	0.77	0.78	2.85	8047	1019	5	0	0	0	0	logfile
✔	6S61	10101	2022-07-04	2019-07-02	1.84	1.89	1.85	1.9	0.011	1.36	0.0	0.06	12.21	0.01	0.312	2.62	1.29	1.8	98.2	0.0	3.69	0.77	0.86	8.46	1.9	0.003	0.57	0.0	0.03	14.82	0.00	1.798	5.19	0.65	1.8	98.2	0.0	4.54	0.74	0.79	0.89	8.65	71060	4128	72	0	30	3854	32904	logfile
✔	7N1Y	24127	2022-07-05	2021-05-28	4.3	2.48	—	2.0	0.015	2.09	23.0	0.15	15.16	0.01	1.099	10.91	1.91	8.5	90.8	0.6	-2.82	0.78	0.64	—	1.9	0.006	0.92	0.0	0.05	14.68	0.01	2.042	15.20	0.04	6.6	93.4	0.0	-1.50	0.70	0.78	0.64	—	26636	3242	31	0	91	0	0	logfile
✔	7WPC	32682	2022-07-03	2022-01-23	2.57	2.17	—	2.0	0.003	0.71	0.0	0.05	15.08	0.01	2.253	2.67	0.12	4.2	95.8	0.0	-4.19	0.69	0.72	2.24	1.9	0.007	1.02	0.0	0.04	17.99	0.00	1.884	12.32	1.51	5.0	95.0	0.0	-1.33	1.32	0.74	0.81	3.41	8057	980	6	0	9	0	0	logfile
✔	7P6A	13223	2022-07-03	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.003	0.65	0.0	0.05	14.09	0.00	2.291	4.28	0.00	4.7	95.3	0.0	-2.61	0.82	0.55	0.89	7.80	4166	540	10	0	0	76	0	logfile
✔	7M3N	23658	2022-07-03	2021-03-18	2.4	2.15	2.40	1.9	0.005	0.63	0.0	0.04	15.95	0.00	2.168	5.79	4.28	4.3	95.6	0.1	-2.53	0.43	0.82	4.98	1.9	0.005	0.62	0.0	0.05	16.99	0.00	2.273	7.83	3.06	4.5	95.3	0.1	-0.64	0.46	0.45	0.85	4.62	6004	759	3	0	0	0	0	logfile
✔	7TDF	25827	2022-07-05	2021-12-31	2.7	2.10	2.66	1.9	0.006	0.74	0.0	0.05	12.56	0.01	2.148	2.81	0.19	3.5	96.5	0.0	0.06	0.74	0.77	4.39	1.9	0.006	0.65	0.0	0.04	15.41	0.01	2.090	5.88	1.04	2.9	97.1	0.0	2.17	1.14	0.76	0.80	3.77	19566	1188	2	0	0	0	9792	logfile
✔	7E9H	31032	2022-07-04	2021-03-04	4.0	2.62	—	1.9	0.003	0.48	0.0	0.04	11.36	0.00	2.202	8.13	0.06	2.9	97.1	0.0	-2.83	0.68	0.61	—	1.9	0.007	0.92	0.0	0.04	15.19	0.01	2.081	15.55	0.24	5.1	94.9	0.0	-1.08	2.01	0.71	0.67	—	16847	2309	8	0	0	0	0	logfile
✔	7N5E	24187	2022-07-04	2021-06-05	2.8	2.16	2.68	1.5	0.023	1.54	0.0	0.09	10.26	0.01	2.378	0.46	0.00	1.2	98.8	0.0	1.87	0.80	0.80	4.07	1.9	0.003	0.57	0.0	0.04	16.12	0.00	2.139	6.42	1.25	2.0	98.0	0.0	2.79	0.58	0.77	0.78	3.12	17915	2176	14	0	7	0	0	logfile
✔	7WiC	32528	2022-07-03	2022-01-03	2.8	2.21	—	1.9	0.005	0.62	0.0	0.05	12.93	0.00	2.176	7.98	0.00	2.7	97.3	0.0	0.61	0.76	0.76	3.53	1.9	0.003	0.58	0.0	0.04	15.64	0.00	2.171	7.81	1.61	3.2	96.8	0.0	1.16	0.36	0.78	0.79	3.07	9048	1158	6	0	0	0	0	logfile
✔	7VDA	31912	2022-07-05	2021-09-06	2.26	2.04	2.42	2.1	0.003	0.53	0.0	0.04	17.67	0.00	2.142	8.23	2.20	2.6	97.4	0.0	1.67	0.66	0.82	4.06	2.0	0.003	0.60	0.0	0.04	18.09	0.00	2.073	9.24	3.21	2.5	97.5	0.0	0.92	0.42	0.66	0.83	4.25	23292	2976	6	0	0	0	0	logfile
✔	7RQS	24635	2022-07-03	2021-08-07	3.57	2.31	3.59	2.0	0.002	0.54	0.0	0.04	13.38	0.00	2.088	9.94	0.26	7.6	92.4	0.0	-0.91	0.70	0.68	2.53	2.0	0.003	0.63	0.0	0.04	15.66	0.01	1.982	12.21	0.53	9.4	90.5	0.1	-1.03	0.59	0.70	0.69	2.57	7792	1074	1	0	1	0	0	logfile
✔	7LT3	23510	2022-07-06	2021-02-18	4.6	3.52	—	4.3	0.012	1.33	34.0	0.08	16.13	0.01	2.017	25.66	1.63	10.7	89.2	0.1	-2.30	0.59	0.56	—	2.0	0.004	0.84	0.0	0.05	15.24	0.01	2.078	21.48	0.01	6.5	93.5	0.0	-0.79	1.45	0.60	0.65	—	93244	11261	22	122	42	0	0	logfile
✔	7B18	11981	2022-07-06	2020-11-24	2.62	2.27	2.75	2.1	0.007	0.84	0.0	0.06	12.74	0.01	2.028	13.06	0.40	4.1	95.8	0.1	-0.36	0.72	0.71	3.05	2.0	0.008	0.87	1.0	0.05	15.77	0.00	2.086	13.90	2.32	4.6	95.4	0.0	-0.29	0.45	0.74	0.74	2.62	30105	3814	13	0	44	0	0	logfile

• ← previous
• Page 3 of 392
• next →