Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UVA	20906	2021-12-01	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.07	0.00	2.207	6.60	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.003	0.61	0.0	0.04	18.40	0.00	2.158	8.08	3.55	4.4	95.6	0.0	0.30	1.31	0.66	0.78	2.82	9561	1199	7	0	0	0	0	logfile
✔	6UUS	20901	2021-12-01	2019-10-31	2.4	2.10	2.30	2.4	0.002	0.50	0.0	0.04	17.13	0.00	2.214	7.39	3.27	2.8	97.2	0.0	-2.25	0.57	0.72	3.22	2.3	0.002	0.57	0.0	0.04	17.80	0.00	2.176	9.30	2.25	2.6	97.4	0.0	0.57	1.00	0.63	0.76	3.20	9308	1190	7	0	0	0	0	logfile
✔	7RTB	24680	2021-12-01	2021-08-12	2.14	2.32	2.23	2.3	0.003	0.59	0.0	0.04	14.52	0.00	2.277	5.37	0.77	1.6	98.4	0.0	-0.80	0.64	0.69	3.38	2.3	0.003	0.58	0.0	0.04	16.92	0.00	2.262	4.51	2.43	2.3	97.7	0.0	1.24	0.68	0.68	0.82	4.06	8972	1169	7	0	0	1	0	logfile
✔	6i5A	4413	2021-12-01	2018-11-13	2.3	2.34	1.50	2.3	0.012	1.84	1.0	0.10	14.16	0.01	2.431	6.70	0.74	1.3	97.4	1.3	-0.89	0.26	0.84	3.95	2.3	0.003	0.54	0.0	0.04	16.64	0.00	2.349	2.93	4.44	2.0	98.0	0.0	2.46	1.23	0.30	0.87	4.22	1206	153	1	0	0	0	0	logfile
✔	7MBX	23749	2021-12-01	2021-04-01	1.95	2.56	1.94	2.4	0.006	0.87	1.0	0.16	12.33	0.01	2.287	2.16	0.45	1.5	98.5	0.0	-0.11	0.72	0.86	4.55	2.3	0.003	0.71	0.0	0.07	15.40	0.00	2.177	5.89	0.89	1.1	98.9	0.0	1.62	0.53	0.71	0.88	4.35	8433	1065	11	0	2	61	0	logfile
✔	7DRT	30827	2021-12-01	2020-12-29	2.2	2.32	—	2.3	0.011	1.53	9.0	0.09	13.34	0.01	2.064	5.88	2.38	5.4	94.1	0.5	-0.76	0.39	0.58	3.02	2.3	0.003	0.74	0.0	0.04	17.33	0.01	2.233	9.77	4.90	5.1	94.8	0.1	-0.18	1.11	0.64	0.76	2.48	6849	830	7	0	7	10	0	logfile
✔	6ZXA	11516	2021-12-01	2020-07-29	2.38	2.34	—	2.3	0.019	3.63	0.0	0.07	20.59	0.01	2.324	10.63	5.21	12.8	87.2	0.0	-1.00	0.75	0.90	5.13	2.3	0.018	2.56	0.0	0.06	20.71	0.01	2.154	13.10	2.53	11.5	88.5	0.0	0.83	0.35	0.75	0.88	4.32	8442	791	28	0	35	0	0	logfile
✔	7N9A	24253	2021-12-01	2021-06-17	3.5	2.68	—	2.4	0.007	1.26	0.0	0.06	12.63	0.01	2.135	19.96	0.00	2.9	97.1	0.0	-0.16	0.72	0.70	2.72	2.4	0.003	0.71	0.0	0.04	15.45	0.00	2.164	13.87	0.00	2.9	97.1	0.0	-1.00	0.56	0.72	0.69	1.84	2431	312	2	0	0	0	0	logfile
✔	7KJR	22898	2021-12-01	2020-10-26	2.08	2.52	2.15	2.4	0.007	0.89	0.0	0.05	16.44	0.00	2.254	7.60	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	2.4	0.003	0.52	0.0	0.04	15.79	0.00	2.101	9.36	0.74	2.1	97.9	0.0	1.36	0.39	0.67	0.87	4.69	3840	448	8	0	2	122	0	logfile
✔	7L1F	23109	2021-12-01	2020-12-14	3.89	2.82	—	2.2	0.008	1.36	3.0	0.08	13.38	0.01	2.323	3.10	0.00	6.6	93.4	0.0	-4.38	0.72	0.70	2.25	2.4	0.010	1.30	0.0	0.05	15.85	0.01	2.043	15.49	0.90	8.3	91.7	0.0	-1.80	1.22	0.74	0.71	1.82	8825	1009	5	31	4	0	0	logfile
✔	6VSA	21373	2021-12-01	2020-02-10	2.32	3.14	—	2.5	0.013	2.26	75.0	0.16	18.03	0.01	2.048	13.16	4.44	2.3	97.7	0.0	-1.58	0.94	0.94	4.86	2.5	0.006	0.63	0.0	0.04	17.50	0.00	2.159	10.74	2.03	0.6	99.3	0.1	1.33	1.15	0.93	0.91	4.38	9712	1175	10	0	0	42	0	logfile
✔	7B6D	12052	2021-12-02	2020-12-07	4.27	2.60	—	2.5	0.005	0.87	0.0	0.05	14.40	0.01	2.049	32.90	0.43	10.2	89.7	0.1	-2.46	0.78	0.74	—	2.5	0.003	0.72	0.0	0.05	14.37	0.00	2.088	19.62	0.00	8.6	91.4	0.0	-1.16	0.59	0.78	0.74	—	10470	1290	8	0	0	0	0	logfile
✔	7E8F	31017	2021-12-01	2021-03-01	3.18	2.62	2.95	2.6	0.005	0.68	0.0	0.05	13.86	0.01	2.157	8.95	0.00	7.6	92.4	0.0	-1.64	0.68	0.81	4.24	2.6	0.006	0.78	0.0	0.05	15.28	0.00	2.140	9.24	0.63	7.3	92.7	0.0	-1.05	1.10	0.68	0.82	3.87	8768	1134	8	0	0	0	0	logfile
✔	7M05	23609	2021-12-01	2021-03-10	2.39	2.66	2.49	2.6	0.013	1.00	0.0	0.06	14.78	0.01	2.064	3.66	0.50	6.9	92.3	0.8	-3.01	0.75	0.81	4.52	2.6	0.002	0.55	0.0	0.05	16.21	0.00	2.061	2.78	1.00	2.0	97.9	0.1	0.63	1.28	0.79	0.84	3.83	57152	3636	12	0	4	0	28188	logfile
✔	7N6B	24206	2021-12-01	2021-06-08	2.66	2.57	—	2.6	0.006	0.75	0.0	0.05	16.31	0.01	2.147	8.98	0.00	3.3	96.7	0.0	0.66	0.53	0.72	2.30	2.6	0.010	0.95	1.0	0.04	17.23	0.01	2.114	9.39	2.26	3.6	96.4	0.0	1.29	0.42	0.55	0.74	1.75	5942	757	1	0	2	0	0	logfile
✔	7Ki1	22883	2021-12-02	2020-10-22	2.5	2.57	2.46	2.6	0.008	0.94	0.0	0.06	15.56	0.00	2.257	8.41	0.28	3.5	96.5	0.0	-1.64	0.64	0.81	3.96	2.6	0.004	0.60	0.0	0.04	16.89	0.00	2.100	5.92	2.03	2.4	97.6	0.0	0.92	0.50	0.66	0.85	3.64	10265	1285	11	0	1	73	0	logfile
✔	7Ki0	22882	2021-12-01	2020-10-22	2.5	2.66	2.41	2.6	0.007	0.86	0.0	0.06	13.88	0.00	2.218	7.79	0.10	3.0	97.0	0.0	-0.60	0.66	0.85	4.49	2.6	0.002	0.51	0.0	0.04	16.25	0.00	2.177	4.42	1.33	2.1	97.9	0.0	1.42	1.00	0.68	0.89	4.00	9242	1143	12	0	1	79	0	logfile
✔	7AAP	11692	2021-12-01	2020-09-04	2.5	2.71	2.48	2.8	0.006	0.53	0.0	0.04	12.44	0.00	2.097	3.69	0.20	1.5	98.5	0.0	0.59	0.79	0.87	4.74	2.7	0.003	0.52	0.0	0.04	14.63	0.00	2.181	5.75	0.81	2.0	98.0	0.0	0.43	0.82	0.80	0.90	4.36	9446	1120	9	21	7	0	0	logfile
✔	7D6V	30594	2021-12-01	2020-10-02	2.53	2.74	—	2.7	0.031	1.56	2.0	0.50	14.77	0.01	2.186	9.51	0.00	9.6	90.3	0.1	-0.92	0.76	0.88	4.90	2.7	0.013	1.22	1.0	0.06	16.25	0.01	1.800	7.67	1.55	7.9	92.0	0.1	-0.22	0.33	0.72	0.89	4.03	8793	1104	6	0	7	0	0	logfile
✔	6ZoN	11325	2021-12-01	2020-07-07	3.0	3.06	—	2.7	0.010	1.05	0.0	0.06	16.88	0.01	2.199	7.74	0.53	6.3	93.7	0.0	-4.42	0.80	0.72	2.34	2.7	0.008	0.83	0.0	0.04	17.22	0.01	1.819	17.35	2.17	5.9	94.1	0.0	-1.53	0.47	0.77	0.69	1.92	109201	9169	51	1721	183	0	0	logfile

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