Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7C7S	30301	2022-05-13	2020-05-26	2.9	2.38	—	1.8	0.006	0.77	0.0	0.14	13.76	0.01	2.153	7.95	0.00	3.7	96.3	0.0	-2.62	0.83	0.80	2.82	1.8	0.007	0.93	0.0	0.04	16.10	0.01	2.172	9.41	2.63	3.8	96.2	0.0	-0.13	0.59	0.85	0.82	2.55	10915	1355	4	0	9	0	0	logfile
✔	7M3G	23654	2022-05-13	2021-03-18	2.5	2.29	—	1.8	0.007	0.95	14.0	0.06	16.94	0.01	2.281	2.29	0.93	3.0	97.0	0.0	-2.02	0.84	0.85	3.70	1.8	0.003	0.56	14.0	0.04	17.35	0.01	2.182	4.31	2.29	3.2	96.8	0.0	0.03	1.15	0.85	0.87	3.24	13298	1627	11	0	41	0	0	logfile
✔	7RPo	24618	2022-05-13	2021-08-03	4.16	2.77	—	1.8	0.003	0.50	0.0	0.04	16.86	0.00	1.759	6.97	1.64	8.5	91.5	0.0	-2.01	0.74	0.71	—	1.8	0.005	0.77	0.0	0.05	18.51	0.01	1.983	13.27	0.00	11.0	89.0	0.0	-2.17	1.73	0.75	0.71	—	10602	1179	9	62	5	0	0	logfile
✔	7L1S	23117	2022-05-15	2020-12-15	3.6	2.22	—	2.3	0.011	1.81	37.0	0.12	14.05	0.01	2.011	4.68	4.07	3.3	96.6	0.2	-0.43	0.62	0.68	1.03	1.8	0.005	0.87	0.0	0.05	17.94	0.01	1.709	17.90	0.59	4.5	95.5	0.0	-0.15	1.68	0.66	0.69	0.74	24176	3118	12	0	11	0	0	logfile
✔	7WPC	32682	2022-05-12	2022-01-23	2.57	2.17	—	2.0	0.003	0.71	0.0	0.05	15.08	0.01	2.253	2.67	0.12	4.2	95.8	0.0	-4.19	0.69	0.72	2.24	1.9	0.007	1.02	0.0	0.04	17.99	0.00	1.884	12.32	1.51	5.0	95.0	0.0	-1.33	1.32	0.74	0.81	3.41	8057	980	6	0	9	0	0	logfile
✔	7N5E	24187	2022-05-14	2021-06-05	2.8	2.16	2.68	1.5	0.023	1.54	0.0	0.09	10.26	0.01	2.378	0.46	0.00	1.2	98.8	0.0	1.87	0.80	0.80	4.07	1.9	0.003	0.57	0.0	0.04	16.12	0.00	2.139	6.42	1.25	2.0	98.0	0.0	2.79	0.58	0.77	0.78	3.12	17915	2176	14	0	7	0	0	logfile
✔	7N1U	24123	2022-05-15	2021-05-28	3.14	2.62	—	1.9	0.013	1.75	7.0	0.13	14.19	0.01	2.003	6.76	1.56	6.1	93.7	0.3	-1.65	0.83	0.80	3.13	1.9	0.004	0.76	0.0	0.05	15.84	0.01	2.016	11.63	0.25	4.0	96.0	0.0	-0.09	0.66	0.84	0.83	2.29	26619	3225	39	0	99	0	0	logfile
✔	7S8o	24899	2022-05-12	2021-09-18	2.58	2.12	2.59	1.9	0.008	0.79	0.0	0.05	13.16	0.00	2.102	3.36	0.00	5.8	94.2	0.0	0.31	0.81	0.80	4.50	1.9	0.008	0.99	0.0	0.04	15.83	0.00	2.222	3.67	1.61	4.2	95.8	0.0	0.97	0.38	0.84	0.83	3.24	8331	1101	6	0	1	0	0	logfile
✔	7M3N	23658	2022-05-12	2021-03-18	2.4	2.15	2.40	1.9	0.005	0.63	0.0	0.04	15.95	0.00	2.168	5.79	4.28	4.3	95.6	0.1	-2.53	0.43	0.82	4.98	1.9	0.005	0.62	0.0	0.05	16.99	0.00	2.273	7.83	3.06	4.5	95.3	0.1	-0.64	0.46	0.45	0.85	4.62	6004	759	3	0	0	0	0	logfile
✔	6WWU	21948	2022-05-13	2020-05-09	2.7	2.08	2.76	1.9	0.011	1.26	1.0	0.06	16.22	0.02	2.072	6.98	2.78	5.8	94.0	0.2	-3.98	0.60	0.76	4.02	1.9	0.004	0.64	0.0	0.04	17.69	0.00	1.980	7.35	2.30	3.6	96.4	0.1	-0.47	0.68	0.61	0.82	4.01	9688	1216	6	1	4	0	0	logfile
✔	7E9H	31032	2022-05-14	2021-03-04	4.0	2.62	—	1.9	0.003	0.48	0.0	0.04	11.36	0.00	2.202	8.13	0.06	2.9	97.1	0.0	-2.83	0.68	0.61	—	1.9	0.007	0.92	0.0	0.04	15.19	0.01	2.081	15.55	0.24	5.1	94.9	0.0	-1.08	2.01	0.71	0.67	—	16847	2309	8	0	0	0	0	logfile
✔	7S8P	24900	2022-05-12	2021-09-18	2.6	2.11	2.62	1.8	0.024	0.85	0.0	0.18	12.77	0.00	2.183	3.24	0.00	5.8	94.2	0.0	-2.01	0.73	0.75	4.73	1.9	0.004	0.80	0.0	0.12	14.88	0.01	2.152	4.45	1.24	4.6	95.4	0.0	-0.76	0.29	0.84	0.84	4.19	8093	1089	5	0	1	0	0	logfile
✔	7VUH	32128	2022-05-13	2021-11-02	3.22	2.19	—	1.9	0.003	0.64	0.0	0.04	13.57	0.00	2.099	14.21	0.00	6.2	93.8	0.0	-1.87	0.71	0.69	2.81	1.9	0.004	0.65	0.0	0.04	15.83	0.01	2.007	14.34	0.33	5.5	94.5	0.0	-1.24	0.38	0.71	0.72	2.33	8302	1042	5	0	1	0	0	logfile
✔	7N1Y	24127	2022-05-15	2021-05-28	4.3	2.48	—	2.0	0.015	2.09	23.0	0.15	15.16	0.01	1.099	10.91	1.91	8.5	90.8	0.6	-2.82	0.78	0.64	—	1.9	0.006	0.92	0.0	0.05	14.68	0.01	2.042	15.20	0.04	6.6	93.4	0.0	-1.50	0.70	0.78	0.64	—	26636	3242	31	0	91	0	0	logfile
✔	7P6A	13223	2022-05-12	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.003	0.65	0.0	0.05	14.09	0.00	2.291	4.28	0.00	4.7	95.3	0.0	-2.61	0.82	0.55	0.89	7.80	4166	540	10	0	0	76	0	logfile
✔	7NA7	24267	2022-05-13	2021-06-20	2.7	2.07	—	2.0	0.006	1.03	5.0	0.22	13.26	0.01	2.178	7.49	0.61	1.6	98.4	0.0	0.32	0.76	0.75	3.53	1.9	0.004	0.78	1.0	0.07	15.97	0.00	2.103	9.49	2.75	2.2	97.8	0.0	0.65	0.55	0.81	0.82	3.60	9036	1141	7	0	3	0	0	logfile
✔	6Xi8	22191	2022-05-12	2020-06-19	3.64	2.63	3.78	2.0	0.010	1.69	4.0	0.11	15.14	0.01	1.333	6.79	0.77	9.0	91.0	0.0	-4.62	0.66	0.54	0.71	1.9	0.006	0.99	0.0	0.05	17.21	0.01	2.201	19.25	0.97	9.0	91.0	0.0	-2.46	1.27	0.69	0.64	0.82	5022	636	4	0	2	0	0	logfile
✔	7o6Q	12740	2022-05-12	2021-04-12	1.88	2.21	—	1.9	0.010	0.71	0.0	0.05	12.80	0.01	2.115	4.83	1.25	3.2	96.8	0.0	-1.61	0.88	0.85	7.59	1.9	0.002	0.47	0.0	0.04	14.46	0.00	2.188	5.16	1.63	0.8	99.2	0.0	3.35	0.36	0.90	0.90	6.06	7999	997	8	0	0	399	0	logfile
✔	7N8o	24239	2022-05-12	2021-06-15	1.93	1.73	—	1.9	0.024	2.36	0.0	0.13	20.20	0.01	1.522	14.85	1.91	3.0	96.9	0.1	0.75	0.73	0.75	5.48	1.9	0.005	0.77	0.0	0.04	18.49	0.01	2.020	11.59	1.40	2.6	97.4	0.0	1.31	0.36	0.75	0.77	5.38	54656	5544	113	0	228	1236	0	logfile
✔	6ZGL	11210	2022-05-14	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.41	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.56	0.0	0.04	15.75	0.00	2.118	4.99	1.00	0.6	99.4	0.0	3.59	0.75	0.76	0.83	7.07	15760	1848	24	0	0	964	0	logfile

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