Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JG6	22312	2023-11-17	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.004	0.90	0.0	0.00	5.83	0.00	2.226	1.17	0.00	11.4	88.6	0.0	-0.80	1.65	0.71	0.69	—	19320	4819	20	0	11	0	0	logfile
✔	7KPW	22990	2023-11-13	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.9	0.003	0.73	0.0	0.04	5.85	0.00	2.148	2.79	0.00	11.5	87.9	0.6	-0.50	2.04	0.82	0.82	—	4313	865	1	0	0	0	0	logfile
✔	5VCA	8659	2023-11-16	2017-03-31	4.8	6.04	—	5.9	0.021	2.64	50.0	0.15	5.91	0.01	1.097	2.19	0.00	6.9	90.0	3.1	-4.41	0.73	0.70	—	5.8	0.004	0.74	0.0	0.04	6.04	0.00	2.096	8.58	0.00	15.1	84.8	0.1	-2.22	2.93	0.76	0.67	—	16080	3264	6	0	0	0	0	logfile
✔	7BZY	30263	2023-11-13	2020-04-29	3.7	5.07	3.67	2.9	0.005	1.03	0.0	0.05	7.60	0.00	2.175	11.89	0.00	15.0	84.6	0.3	-5.26	0.62	0.47	—	3.4	0.003	0.82	0.0	0.05	6.08	0.00	2.106	13.54	0.00	14.3	85.7	0.0	-3.30	1.23	0.85	0.74	—	6169	1260	3	0	0	0	0	logfile
✔	8GTD	34250	2023-11-20	2022-09-08	4.7	4.27	4.25	4.2	0.014	2.16	0.0	0.00	5.49	0.01	2.285	3.73	0.00	8.4	90.0	1.6	0.41	0.50	0.44	—	4.2	0.004	0.93	0.0	0.00	6.20	0.00	2.228	4.76	0.00	19.1	80.2	0.7	-2.63	1.26	0.52	0.51	—	29580	7392	24	0	0	0	0	logfile
✔	6PWC	20505	2023-11-13	2019-07-22	4.9	5.55	—	4.5	0.003	0.67	0.0	0.05	4.68	0.01	2.345	2.19	0.00	1.3	98.7	0.0	-0.09	0.61	0.67	—	4.6	0.004	0.75	0.0	0.04	6.37	0.00	2.094	19.59	0.00	7.2	92.8	0.0	-0.38	1.57	0.61	0.59	—	5879	1055	5	0	0	0	0	logfile
✔	6TNG	10532	2023-11-14	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	11.35	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.004	0.85	0.0	0.00	6.39	0.00	2.200	10.87	0.00	22.8	77.1	0.1	-3.08	0.35	0.76	0.72	—	8240	2060	2	0	0	0	0	logfile
✔	7MJQ	23882	2023-11-16	2021-04-20	4.2	4.29	—	4.2	0.009	1.55	0.0	0.15	6.42	0.01	1.552	6.01	0.00	9.4	90.6	0.0	-1.25	0.52	0.66	—	4.2	0.003	0.76	0.0	0.05	6.43	0.00	2.169	2.39	0.00	11.9	88.1	0.0	-2.25	1.83	0.59	0.75	—	14976	2982	13	0	10	0	0	logfile
✔	7TK8	25960	2023-11-17	2022-01-17	4.7	7.79	12.86	4.4	0.019	2.21	0.0	0.00	6.68	0.01	2.390	0.08	0.00	4.1	94.4	1.5	-0.46	0.60	0.62	—	4.4	0.007	1.06	0.0	0.00	6.46	0.01	1.965	24.73	0.00	11.5	88.2	0.3	-0.96	1.58	0.81	0.81	—	20227	5056	27	0	0	0	0	logfile
✔	7TJZ	25947	2023-11-17	2022-01-17	4.4	7.00	4.54	4.2	0.019	2.21	0.0	0.00	6.67	0.01	2.384	0.19	0.00	4.2	94.2	1.6	-0.41	0.58	0.63	—	4.2	0.017	1.19	0.0	0.00	6.51	0.01	2.047	16.64	0.00	13.2	86.4	0.3	-1.19	0.80	0.82	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	6LHW	0901	2023-11-15	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.29	0.0	0.04	6.56	0.00	2.027	44.00	0.00	0.0	0.0	0.0	—	3.20	0.83	0.64	—	7644	0	3	0	1541	0	0	logfile
✔	6LHV	0900	2023-11-16	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.59	—	4.4	0.010	1.38	0.0	0.05	6.64	0.00	2.051	53.25	0.00	0.0	0.0	0.0	—	3.58	0.84	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	8G09	29650	2023-11-17	2023-01-31	3.1	3.88	3.23	3.2	0.005	0.71	0.0	0.23	5.31	0.00	1.766	0.75	0.00	3.1	96.9	0.0	0.54	0.74	0.70	—	3.4	0.009	1.01	0.0	0.07	6.67	0.01	1.686	8.59	0.00	13.5	86.5	0.0	-1.37	0.75	0.82	0.82	—	19599	4860	26	0	10	0	0	logfile
✔	8G0C	29653	2023-11-17	2023-01-31	2.8	3.69	2.84	2.8	0.005	0.85	0.0	0.17	6.89	0.00	1.814	0.39	0.00	2.6	97.3	0.0	0.98	0.69	0.67	—	2.8	0.008	0.93	0.0	0.08	6.76	0.00	1.750	3.64	0.00	10.1	89.8	0.1	-0.16	1.22	0.79	0.81	—	19874	4860	30	0	16	0	0	logfile
✔	6oLK	20115	2023-11-17	2019-04-16	4.0	4.14	—	4.1	0.005	1.04	0.0	0.06	5.09	0.01	2.445	0.20	0.00	2.3	97.7	0.0	-0.75	0.56	0.49	—	4.1	0.005	0.93	0.0	0.05	7.00	0.00	2.045	9.16	0.00	14.0	86.0	0.0	-2.47	1.44	0.64	0.61	—	10323	2094	6	0	0	0	0	logfile
✔	7Z8L	14556	2023-11-16	2022-03-17	4.9	4.50	4.38	4.0	0.012	1.30	0.0	0.09	6.41	0.01	2.296	0.29	0.00	1.2	98.8	0.0	1.37	0.76	0.77	—	4.0	0.005	0.71	0.0	0.04	7.01	0.00	1.822	7.86	0.00	6.5	93.5	0.0	0.20	0.73	0.84	0.81	—	16513	3311	3	0	5	0	0	logfile
✔	7RFP	24444	2023-11-13	2021-07-14	4.4	4.57	—	4.3	0.014	2.06	8.0	0.12	7.12	0.01	1.581	3.60	8.00	9.5	87.5	3.0	-1.46	0.68	0.61	—	4.3	0.004	0.92	0.0	0.04	7.02	0.00	2.177	9.44	0.00	14.9	84.6	0.5	-3.98	1.49	0.80	0.75	—	5532	1114	6	0	0	0	0	logfile
✔	8G0D	29654	2023-11-17	2023-01-31	2.9	3.84	3.02	2.9	0.005	0.87	0.0	0.18	6.88	0.00	1.844	0.67	0.00	2.6	97.3	0.0	0.74	0.68	0.65	—	2.9	0.007	0.88	0.0	0.09	7.08	0.00	1.754	3.95	0.00	10.8	89.2	0.1	-0.16	1.63	0.80	0.81	—	19874	4860	30	0	16	0	0	logfile
✔	6RRS	4989	2023-11-21	2019-05-20	3.9	4.30	4.41	3.8	0.013	2.10	0.0	0.00	2.04	0.01	2.364	0.79	0.00	3.9	95.3	0.8	-0.85	0.56	0.64	—	3.8	0.004	0.84	0.0	0.00	7.15	0.00	2.195	1.79	0.00	15.0	85.0	0.0	-1.14	2.03	0.80	0.71	—	93060	23220	180	0	0	0	0	logfile
✔	7JLX	22383	2023-11-13	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.003	0.75	0.0	0.04	7.17	0.00	2.306	8.03	0.00	17.7	82.3	0.0	-2.25	2.42	0.48	0.53	—	3288	664	4	0	0	0	0	logfile

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