Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6H6B	0148	2021-12-01	2018-07-26	3.4	3.13	—	3.5	0.008	1.10	0.0	0.20	8.13	0.00	2.530	5.82	0.00	14.3	85.7	0.0	-4.80	0.44	0.73	5.60	3.2	0.005	0.91	0.0	0.18	11.69	0.00	2.137	6.56	0.50	19.6	80.4	0.0	-4.04	1.83	0.41	0.78	3.27	8060	580	10	0	0	0	4100	logfile
✔	6MET	9109	2021-12-02	2018-09-07	4.5	4.68	4.22	4.4	0.006	0.99	0.0	0.15	10.66	0.01	1.985	11.97	1.37	8.0	91.5	0.5	-4.19	0.58	0.54	—	4.4	0.004	0.85	0.0	0.07	11.72	0.00	2.102	15.90	0.00	7.7	92.2	0.1	-1.85	1.21	0.69	0.81	—	8911	1074	5	0	32	0	0	logfile
✔	6D3R	7793	2021-12-01	2018-04-16	4.3	4.80	4.40	4.5	0.017	1.75	0.0	0.10	9.07	0.01	2.385	0.57	0.00	1.5	98.5	0.0	0.66	0.66	0.76	—	4.5	0.002	0.65	0.0	0.04	11.84	0.00	2.257	6.64	0.00	2.2	97.8	0.0	1.88	1.21	0.68	0.77	—	7610	1127	1	0	2	0	0	logfile
✔	7S9D	24933	2021-12-02	2021-09-20	4.6	4.40	—	4.1	0.006	0.89	0.0	0.05	11.27	0.00	2.095	23.20	0.35	10.7	89.0	0.3	-0.95	0.61	0.80	—	4.1	0.002	0.63	0.0	0.04	11.85	0.00	2.181	11.11	0.00	8.7	91.0	0.3	-0.37	0.46	0.60	0.77	—	10462	1354	2	0	0	0	0	logfile
✔	7M65	23689	2021-12-01	2021-03-25	4.1	4.11	—	4.3	0.009	1.40	0.0	0.10	12.05	0.00	2.392	33.63	0.00	17.6	82.4	0.0	-6.09	0.52	0.73	—	4.2	0.004	0.88	0.0	0.05	11.88	0.00	2.144	20.38	0.00	14.5	85.5	0.0	-6.10	4.44	0.52	0.72	—	2025	275	10	0	5	0	0	logfile
✔	6HN4	0246	2021-12-01	2018-09-14	4.2	4.43	—	4.1	0.007	1.49	2.0	0.07	9.72	0.01	2.187	6.18	0.00	6.9	91.4	1.8	-2.18	0.73	0.70	—	4.2	0.005	0.78	0.0	0.05	11.93	0.00	2.088	16.30	0.00	8.0	92.0	0.0	-0.20	1.15	0.76	0.78	—	5702	700	2	0	6	0	0	logfile
✔	7S9B	24931	2021-12-02	2021-09-20	4.2	4.16	—	4.0	0.006	0.82	0.0	0.05	11.72	0.00	2.213	19.98	0.78	9.9	89.8	0.3	-0.99	0.61	0.81	—	4.0	0.002	0.67	0.0	0.04	11.96	0.00	2.251	11.22	0.00	6.7	93.3	0.0	0.44	0.44	0.60	0.79	—	10458	1356	2	0	0	0	0	logfile
✔	6HD5	0201	2021-12-01	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.003	0.73	0.0	0.04	11.96	0.00	2.138	15.18	0.00	5.4	94.5	0.1	-0.09	2.01	0.45	0.55	—	9707	1234	3	0	0	0	0	logfile
✔	6GKH	0023	2021-12-02	2018-05-21	4.06	4.18	3.92	4.1	0.006	0.95	0.0	0.05	9.62	0.00	1.641	13.64	0.00	10.0	90.0	0.0	-4.26	0.61	0.79	—	4.1	0.002	0.75	0.0	0.04	11.96	0.00	1.908	21.53	0.00	7.5	92.5	0.0	-0.56	1.15	0.62	0.81	—	10587	685	4	30	4	0	4399	logfile
✔	6QVD	4649	2021-12-01	2019-03-01	4.34	5.50	4.28	6.0	0.010	1.80	8.0	0.10	12.96	0.01	2.193	12.88	3.61	9.6	90.1	0.3	-4.01	0.68	0.75	—	5.3	0.003	0.89	0.0	0.05	11.96	0.00	2.129	17.74	0.00	8.1	91.7	0.2	-0.75	1.76	0.67	0.71	—	9212	1192	2	0	0	0	0	logfile
✔	6ZGD	11202	2021-12-02	2020-06-18	4.1	4.30	3.99	4.2	0.006	0.62	0.0	0.05	10.93	0.01	2.137	10.94	0.61	4.6	95.4	0.0	-1.11	0.74	0.82	—	4.2	0.003	0.63	0.0	0.05	11.97	0.01	2.162	9.37	0.00	2.4	97.6	0.0	-0.85	0.99	0.71	0.82	—	10175	1440	5	0	0	0	0	logfile
✔	6UZ2	20950	2021-12-01	2019-11-14	4.2	4.39	—	4.3	0.009	1.13	0.0	0.05	13.78	0.01	2.197	30.96	2.00	15.5	84.3	0.2	-5.29	0.69	0.78	—	4.3	0.003	0.79	0.0	0.04	11.99	0.00	2.157	13.84	0.00	5.3	94.6	0.1	0.06	0.98	0.68	0.76	—	7392	1140	2	0	0	0	0	logfile
✔	6UZL	20962	2021-12-01	2019-11-15	4.4	4.66	—	4.4	0.005	1.00	0.0	0.05	13.21	0.01	2.198	27.64	0.18	15.1	84.1	0.8	-4.74	0.69	0.77	—	4.4	0.003	0.75	0.0	0.04	11.99	0.00	2.176	14.65	0.00	6.7	93.3	0.0	0.75	0.96	0.68	0.76	—	7008	1062	2	0	0	0	0	logfile
✔	6H66	0145	2021-12-01	2018-07-26	4.16	4.23	3.99	4.2	0.008	0.88	0.0	0.05	9.41	0.01	2.070	15.41	0.17	10.4	89.4	0.2	-3.09	0.61	0.76	—	4.2	0.002	0.63	0.0	0.04	11.99	0.00	2.063	21.55	0.00	7.8	92.2	0.0	0.56	1.86	0.62	0.77	—	10017	667	4	30	1	0	4120	logfile
✔	6H61	0143	2021-12-01	2018-07-25	4.02	4.20	3.87	4.0	0.007	0.84	0.0	0.05	9.67	0.00	2.107	14.74	0.18	9.5	90.5	0.0	-2.98	0.62	0.78	—	4.0	0.002	0.57	0.0	0.04	12.00	0.00	2.087	22.42	0.00	6.1	93.9	0.0	0.63	1.83	0.63	0.77	—	9912	660	4	30	1	0	4057	logfile
✔	6WB2	21585	2021-12-01	2020-03-26	4.5	4.71	—	4.5	0.002	0.44	0.0	0.04	11.33	0.00	2.293	7.72	0.17	3.1	96.9	0.0	-3.59	0.86	0.80	—	4.5	0.003	0.56	0.0	0.04	12.04	0.00	2.149	10.01	0.17	3.6	96.4	0.0	-0.22	0.62	0.87	0.83	—	8407	946	4	75	0	0	0	logfile
✔	7KAT	22783	2021-12-02	2020-10-01	4.4	5.04	4.41	4.5	0.002	0.51	0.0	0.04	11.32	0.00	2.185	6.85	0.00	1.9	98.1	0.0	-0.63	0.65	0.83	—	4.5	0.002	0.57	0.0	0.04	12.07	0.00	2.070	9.26	0.00	2.1	97.9	0.0	2.26	1.32	0.65	0.85	—	10431	1340	6	0	0	0	0	logfile
✔	6HQE	0252	2021-12-01	2018-09-24	4.4	4.34	—	4.4	0.009	1.25	0.0	0.06	9.67	0.01	2.307	6.79	0.00	4.8	95.2	0.0	-7.05	0.65	0.85	—	4.4	0.004	0.74	0.0	0.04	12.12	0.01	2.264	19.28	0.00	2.6	97.4	0.0	1.06	1.03	0.64	0.84	—	9360	1196	52	0	0	0	0	logfile
✔	6J30	9773	2021-12-01	2019-01-03	4.5	4.74	—	4.6	0.002	0.44	0.0	0.04	7.35	0.00	2.093	8.56	0.07	6.4	93.4	0.3	-3.38	0.86	0.72	—	4.5	0.003	0.77	0.0	0.04	12.20	0.00	1.947	21.44	0.00	5.6	94.1	0.3	-0.99	1.91	0.89	0.77	—	106227	13504	47	0	0	0	0	logfile
✔	6C14	7328	2021-12-02	2018-01-03	4.5	4.15	—	4.0	0.005	1.04	0.0	0.06	9.46	0.01	2.263	5.29	0.27	6.8	93.2	0.0	-4.44	0.55	0.70	—	4.0	0.004	0.83	0.0	0.05	12.21	0.01	2.093	19.76	0.27	6.3	93.7	0.0	-2.06	2.41	0.57	0.72	—	6746	860	4	0	0	0	0	logfile

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