Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TK8	25960	2023-04-25	2022-01-17	4.7	7.79	12.86	4.4	0.019	2.21	0.0	0.00	6.68	0.01	2.390	0.08	0.00	4.1	94.4	1.5	-0.46	0.60	0.61	—	4.4	0.007	1.06	0.0	0.00	6.46	0.01	1.965	24.73	0.00	11.5	88.2	0.3	-0.96	1.58	0.81	0.81	—	20227	5056	27	0	0	0	0	logfile
✔	7TJZ	25947	2023-04-25	2022-01-17	4.4	7.00	4.54	4.2	0.019	2.21	0.0	0.00	6.67	0.01	2.384	0.19	0.00	4.2	94.2	1.6	-0.41	0.58	0.63	—	4.2	0.017	1.19	0.0	0.00	6.51	0.01	2.047	16.64	0.00	13.2	86.4	0.3	-1.19	0.80	0.82	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	6LHW	0901	2023-04-22	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.29	0.0	0.04	6.56	0.00	2.027	44.00	0.00	0.0	0.0	0.0	—	3.20	0.83	0.64	—	7644	0	3	0	1541	0	0	logfile
✔	6LHV	0900	2023-04-23	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.59	—	4.4	0.010	1.38	0.0	0.05	6.64	0.00	2.051	53.25	0.00	0.0	0.0	0.0	—	3.58	0.84	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	8G09	29650	2023-04-25	2023-01-31	3.1	3.88	3.23	3.2	0.005	0.71	0.0	0.23	5.31	0.00	1.766	0.75	0.00	3.1	96.9	0.0	0.54	0.74	0.70	—	3.4	0.009	1.01	0.0	0.07	6.67	0.01	1.686	8.59	0.00	13.5	86.5	0.0	-1.37	0.75	0.82	0.82	—	19599	4860	26	0	10	0	0	logfile
✔	6oLK	20115	2023-04-25	2019-04-16	4.0	4.14	—	4.1	0.005	1.04	0.0	0.06	5.09	0.01	2.445	0.20	0.00	2.3	97.7	0.0	-0.75	0.56	0.49	—	4.1	0.005	0.93	0.0	0.05	7.00	0.00	2.045	9.16	0.00	14.0	86.0	0.0	-2.47	1.44	0.64	0.61	—	10323	2094	6	0	0	0	0	logfile
✔	7Z8L	14556	2023-04-24	2022-03-17	4.9	4.50	4.38	4.0	0.012	1.30	0.0	0.09	6.41	0.01	2.296	0.29	0.00	1.2	98.8	0.0	1.37	0.76	0.77	—	4.0	0.005	0.71	0.0	0.04	7.01	0.00	1.822	7.86	0.00	6.5	93.5	0.0	0.20	0.73	0.84	0.81	—	16513	3311	3	0	5	0	0	logfile
✔	7RFP	24444	2023-04-20	2021-07-14	4.4	4.57	—	4.3	0.014	2.06	8.0	0.12	7.12	0.01	1.581	3.60	8.00	9.5	87.5	3.0	-1.46	0.68	0.61	—	4.3	0.004	0.92	0.0	0.04	7.02	0.00	2.177	9.44	0.00	14.9	84.6	0.5	-3.98	1.49	0.80	0.75	—	5532	1114	6	0	0	0	0	logfile
✔	7JLX	22383	2023-04-20	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.003	0.75	0.0	0.04	7.17	0.00	2.306	8.03	0.00	17.7	82.3	0.0	-2.25	2.42	0.48	0.53	—	3288	664	4	0	0	0	0	logfile
✔	7JG7	22313	2023-04-25	2020-07-18	3.5	2.41	3.57	3.4	0.008	1.54	0.0	0.00	6.82	0.01	2.433	0.00	0.00	2.9	96.9	0.1	-0.73	0.63	0.55	—	2.3	0.006	1.16	0.0	0.00	7.34	0.01	2.119	4.50	0.00	14.7	85.1	0.1	-2.00	1.65	0.74	0.72	—	19316	4818	20	0	11	0	0	logfile
✔	6MZJ	9303	2023-04-22	2018-11-05	4.8	5.06	—	4.4	0.015	1.59	0.0	0.09	6.80	0.00	2.352	1.32	2.65	3.2	96.6	0.1	-0.18	0.70	0.72	—	4.5	0.006	1.16	0.0	0.05	7.35	0.01	2.136	10.22	0.00	12.0	87.9	0.1	-2.28	2.22	0.77	0.67	—	12653	2088	52	0	149	0	0	logfile
✔	7TKH	25969	2023-04-25	2022-01-17	4.4	7.29	4.45	4.2	0.019	2.19	0.0	0.00	6.81	0.01	2.385	0.08	0.00	3.9	94.7	1.4	-0.35	0.59	0.62	—	4.2	0.018	1.32	0.0	0.00	7.42	0.01	1.974	32.32	0.00	15.1	84.5	0.3	-2.28	1.70	0.83	0.84	—	20228	5056	27	0	0	0	0	logfile
✔	7TKQ	25978	2023-04-25	2022-01-17	4.5	7.57	4.53	4.3	0.019	2.21	0.0	0.00	6.72	0.01	2.371	0.08	0.00	4.0	94.5	1.5	-0.48	0.59	0.61	—	4.3	0.009	1.21	0.0	0.00	7.52	0.01	1.933	34.86	0.00	13.6	85.9	0.5	-2.21	0.83	0.82	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	6VE3	21153	2023-04-26	2019-12-28	4.3	4.68	4.39	4.4	0.005	1.17	2.0	0.07	5.96	0.01	2.179	22.46	0.00	3.4	96.3	0.3	-0.31	0.81	0.69	—	4.4	0.004	0.91	0.0	0.05	7.54	0.00	2.122	11.06	0.00	11.2	88.8	0.0	-2.55	1.90	0.82	0.82	—	22484	4578	14	0	0	0	0	logfile
✔	8CTG	26989	2023-04-20	2022-05-14	3.8	3.16	3.72	3.3	0.004	0.98	0.0	0.05	7.62	0.01	2.113	12.33	6.90	9.7	88.5	1.8	-3.04	0.57	0.35	-0.17	2.3	0.004	0.91	0.0	0.04	7.56	0.00	2.231	7.59	1.15	15.0	84.8	0.2	-3.09	2.07	0.60	0.45	1.92	5100	1006	4	0	1	0	0	logfile
✔	6VE2	21152	2023-04-29	2019-12-28	4.3	4.80	4.34	4.2	0.006	1.23	0.0	0.07	5.37	0.01	2.173	16.97	0.00	4.7	94.9	0.5	-0.93	0.83	0.70	—	4.2	0.004	0.94	0.0	0.05	7.57	0.00	2.114	14.88	0.00	13.8	86.1	0.1	-3.72	1.19	0.82	0.75	—	30198	6153	21	0	0	0	0	logfile
✔	7TKG	25968	2023-04-25	2022-01-17	4.5	7.60	4.79	4.2	0.019	2.20	0.0	0.00	6.95	0.01	2.361	0.08	0.00	4.3	94.2	1.5	-0.60	0.58	0.61	—	4.3	0.007	1.14	0.0	0.00	7.61	0.01	2.015	33.28	0.00	19.7	80.0	0.3	-3.26	2.09	0.77	0.80	—	20228	5056	27	0	0	0	0	logfile
✔	7JG9	22315	2023-04-25	2020-07-18	3.4	2.37	3.49	3.4	0.009	1.56	0.0	0.20	7.47	0.01	2.424	0.51	0.00	2.9	96.8	0.3	-1.25	0.61	0.54	—	2.2	0.006	1.14	0.0	0.09	7.80	0.01	2.173	4.53	0.00	16.6	83.2	0.2	-2.08	1.33	0.72	0.71	—	19569	4826	26	0	7	0	0	logfile
✔	6oR5	9032	2023-04-21	2019-04-29	4.0	4.23	—	3.9	0.008	1.12	0.0	0.05	10.85	0.00	2.245	4.84	0.00	17.3	82.4	0.3	-5.53	0.76	0.79	—	3.9	0.003	0.62	0.0	0.04	7.85	0.00	2.192	4.64	0.00	15.8	84.2	0.0	-1.38	1.34	0.78	0.80	—	10364	2058	1	0	5	0	0	logfile
✔	6oDJ	20021	2023-04-27	2019-03-26	3.5	3.75	—	3.7	0.009	1.50	0.0	0.07	11.32	0.01	2.438	2.03	0.00	0.0	0.0	0.0	—	0.81	0.81	—	3.7	0.012	1.73	0.0	0.06	7.96	0.00	2.090	10.56	0.00	0.0	0.0	0.0	—	0.60	0.82	0.83	—	25415	0	17	0	5083	0	0	logfile

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