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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6XSS | 22305 | 2022-12-11 | 2020-07-16 | 3.7 | 3.37 | — | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 12.31 | 0.00 | 1.843 | 28.34 | 0.00 | 2.5 | 97.5 | 0.0 | -0.32 | 0.74 | 0.78 | 0.04 | 3.3 | 0.003 | 0.80 | 0.0 | 0.04 | 16.91 | 0.00 | 2.278 | 17.30 | 0.24 | 1.0 | 99.0 | 0.0 | 2.54 | 1.34 | 0.75 | 0.79 | 0.21 | 8048 | 1040 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VUJ | 32130 | 2022-12-12 | 2021-11-02 | 3.8 | 2.78 | — | 2.1 | 0.005 | 0.74 | 0.0 | 0.05 | 13.50 | 0.01 | 1.960 | 19.84 | 0.00 | 6.0 | 93.9 | 0.1 | -0.35 | 0.64 | 0.63 | 0.83 | 3.1 | 0.003 | 0.76 | 0.0 | 0.05 | 16.42 | 0.00 | 1.997 | 20.14 | 0.67 | 6.0 | 93.9 | 0.1 | -0.87 | 0.62 | 0.65 | 0.64 | 0.22 | 8286 | 1034 | 7 | 1 | 2 | 0 | 0 | logfile |
✔ | 7NZM | 12665 | 2022-12-12 | 2021-03-24 | 3.96 | 6.56 | 4.22 | 4.2 | 0.007 | 1.12 | 0.0 | 0.06 | 13.92 | 0.01 | 1.774 | 11.33 | 0.00 | 3.8 | 96.2 | 0.0 | -1.56 | 0.77 | 0.51 | -0.04 | 4.3 | 0.003 | 0.74 | 0.0 | 0.04 | 14.94 | 0.00 | 2.099 | 15.51 | 0.10 | 2.5 | 97.5 | 0.0 | 0.33 | 1.48 | 0.94 | 0.83 | 0.23 | 9109 | 1157 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 6Xi8 | 22191 | 2022-12-11 | 2020-06-19 | 3.64 | 2.63 | 3.78 | 2.0 | 0.010 | 1.69 | 4.0 | 0.11 | 15.20 | 0.01 | 1.333 | 6.79 | 0.77 | 9.0 | 91.0 | 0.0 | -4.62 | 0.66 | 0.54 | 0.71 | 2.0 | 0.004 | 0.96 | 0.0 | 0.05 | 17.05 | 0.01 | 2.101 | 19.76 | 1.74 | 7.2 | 92.8 | 0.0 | -2.47 | 1.26 | 0.69 | 0.64 | 0.24 | 5022 | 636 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7RP6 | 24613 | 2022-12-11 | 2021-08-03 | 3.78 | 3.85 | — | 3.8 | 0.006 | 0.96 | 0.0 | 0.06 | 14.85 | 0.01 | 2.334 | 5.72 | 0.59 | 5.7 | 94.3 | 0.0 | -4.72 | 0.69 | 0.82 | 1.37 | 3.8 | 0.003 | 0.72 | 0.0 | 0.04 | 16.43 | 0.00 | 2.120 | 11.29 | 0.89 | 4.2 | 95.8 | 0.0 | -0.09 | 1.18 | 0.66 | 0.81 | 0.26 | 6753 | 900 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J89 | 6123 | 2022-12-12 | 2014-10-07 | 3.6 | 2.21 | — | 3.5 | 0.022 | 1.64 | 0.0 | 0.10 | 11.97 | 0.01 | 2.578 | 2.11 | 0.00 | 3.5 | 96.5 | 0.0 | -0.96 | 0.83 | 0.81 | 0.77 | 3.2 | 0.004 | 0.56 | 0.0 | 0.03 | 20.77 | 0.01 | 2.082 | 10.42 | 2.01 | 1.4 | 98.6 | 0.0 | 2.48 | 1.98 | 0.81 | 0.79 | 0.26 | 9025 | 551 | 19 | 0 | 0 | 0 | 4598 | logfile |
✔ | 7W6T | 32335 | 2022-12-16 | 2021-12-02 | 3.85 | 4.45 | — | 3.9 | 0.006 | 0.87 | 0.0 | 0.05 | 14.59 | 0.01 | 2.034 | 32.87 | 0.29 | 10.7 | 89.2 | 0.1 | -4.74 | 0.64 | 0.67 | 0.30 | 3.9 | 0.003 | 0.77 | 0.0 | 0.04 | 16.03 | 0.00 | 1.997 | 23.42 | 0.23 | 7.0 | 93.0 | 0.0 | -1.58 | 0.74 | 0.63 | 0.64 | 0.26 | 31768 | 3934 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DGi | 27423 | 2022-12-13 | 2022-06-23 | 3.94 | 4.27 | 4.04 | 4.1 | 0.005 | 1.16 | 4.0 | 0.06 | 15.93 | 0.01 | 2.263 | 8.97 | 0.67 | 5.9 | 93.8 | 0.3 | -2.32 | 0.67 | 0.52 | 0.27 | 4.1 | 0.003 | 0.73 | 0.0 | 0.04 | 16.27 | 0.00 | 2.117 | 19.22 | 0.40 | 6.2 | 93.7 | 0.1 | -0.21 | 0.56 | 0.66 | 0.51 | 0.27 | 13580 | 1690 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CSA | 26961 | 2022-12-15 | 2022-05-12 | 3.84 | 4.24 | 3.87 | 3.9 | 0.012 | 1.75 | 3.0 | 0.09 | 13.74 | 0.02 | 2.527 | 0.32 | 1.18 | 6.0 | 93.8 | 0.2 | -1.46 | 0.82 | 0.78 | 0.63 | 3.9 | 0.003 | 0.65 | 0.0 | 0.04 | 15.04 | 0.00 | 2.105 | 12.38 | 0.11 | 3.9 | 96.1 | 0.0 | -0.01 | 1.66 | 0.83 | 0.79 | 0.27 | 23442 | 3003 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oPE | 13017 | 2022-12-17 | 2021-05-31 | 3.2 | 5.30 | 3.21 | 5.0 | 0.011 | 1.04 | 2.0 | 0.06 | 15.48 | 0.01 | 1.028 | 4.88 | 0.23 | 8.2 | 91.6 | 0.2 | -3.62 | 0.89 | 0.72 | -0.03 | 5.0 | 0.005 | 0.81 | 0.0 | 0.04 | 17.65 | 0.01 | 1.985 | 36.74 | 1.51 | 9.0 | 90.9 | 0.1 | -1.91 | 1.82 | 0.93 | 0.88 | 0.28 | 93862 | 3818 | 33 | 2996 | 0 | 0 | 0 | logfile |
✔ | 7KNT | 22962 | 2022-12-11 | 2020-11-06 | 3.15 | 4.00 | 3.32 | 3.7 | 0.004 | 0.75 | 0.0 | 0.05 | 14.56 | 0.00 | 2.116 | 11.65 | 0.74 | 3.6 | 96.4 | 0.0 | -0.48 | 0.58 | 0.75 | 1.64 | 3.7 | 0.003 | 0.71 | 0.0 | 0.04 | 16.05 | 0.00 | 2.229 | 12.73 | 0.25 | 2.7 | 97.3 | 0.0 | 0.57 | 0.49 | 0.57 | 0.75 | 0.28 | 3716 | 455 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7AS9 | 11890 | 2022-12-16 | 2020-10-27 | 3.5 | 4.52 | 3.51 | 4.2 | 0.007 | 0.98 | 0.0 | 0.05 | 17.12 | 0.01 | 1.976 | 8.28 | 0.07 | 13.0 | 86.6 | 0.4 | -4.86 | 0.92 | 0.83 | 0.18 | 4.2 | 0.006 | 0.86 | 0.0 | 0.04 | 18.30 | 0.01 | 1.959 | 38.41 | 1.06 | 12.4 | 87.5 | 0.1 | -2.90 | 0.73 | 0.92 | 0.84 | 0.28 | 93137 | 3720 | 32 | 2999 | 0 | 0 | 0 | logfile |
✔ | 6PMJ | 20395 | 2022-12-12 | 2019-07-02 | 3.91 | 5.34 | — | 4.4 | 0.011 | 1.21 | 0.0 | 0.06 | 15.82 | 0.01 | 2.011 | 11.05 | 0.31 | 10.4 | 89.3 | 0.3 | -4.41 | 0.67 | 0.43 | 0.20 | 4.4 | 0.003 | 0.70 | 0.0 | 0.04 | 17.49 | 0.00 | 1.825 | 20.54 | 0.31 | 8.2 | 91.6 | 0.1 | -2.11 | 1.65 | 0.89 | 0.77 | 0.28 | 57984 | 3453 | 10 | 110 | 4 | 0 | 28609 | logfile |
✔ | 7KY5 | 23068 | 2022-12-12 | 2020-12-07 | 3.98 | 4.52 | — | 4.3 | 0.003 | 1.07 | 0.0 | 0.05 | 12.90 | 0.01 | 2.200 | 16.76 | 0.07 | 6.6 | 93.4 | 0.0 | -1.06 | 0.72 | 0.75 | 0.32 | 4.3 | 0.003 | 0.87 | 0.0 | 0.05 | 15.38 | 0.00 | 1.943 | 17.97 | 0.45 | 6.2 | 93.8 | 0.0 | -1.17 | 1.05 | 0.73 | 0.77 | 0.28 | 12483 | 1534 | 6 | 0 | 15 | 0 | 0 | logfile |
✔ | 6QZF | 4685 | 2022-12-14 | 2019-03-11 | 3.8 | 4.25 | — | 4.1 | 0.010 | 1.06 | 0.0 | 0.06 | 10.18 | 0.01 | 2.143 | 10.35 | 0.16 | 9.8 | 90.1 | 0.0 | -4.87 | 0.67 | 0.72 | 0.54 | 4.1 | 0.005 | 0.94 | 0.0 | 0.05 | 17.06 | 0.00 | 2.016 | 28.21 | 1.13 | 9.3 | 90.7 | 0.0 | -2.07 | 1.74 | 0.66 | 0.72 | 0.29 | 71628 | 8880 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MU2 | 9244 | 2022-12-22 | 2018-10-22 | 3.9 | 4.63 | — | 4.5 | 0.012 | 2.05 | 157.0 | 0.17 | 15.10 | 0.01 | 1.078 | 54.14 | 14.66 | 11.0 | 87.3 | 1.7 | -1.58 | 0.70 | 0.68 | 0.40 | 4.5 | 0.008 | 1.13 | 3.0 | 0.06 | 15.84 | 0.01 | 1.996 | 35.83 | 2.85 | 12.2 | 87.3 | 0.5 | -0.80 | 1.02 | 0.73 | 0.73 | 0.32 | 51404 | 8680 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RAX | 4786 | 2022-12-20 | 2019-04-08 | 3.99 | 4.07 | 3.97 | 4.1 | 0.011 | 1.46 | 27.0 | 0.13 | 18.03 | 0.01 | 1.308 | 24.00 | 6.70 | 19.2 | 80.3 | 0.5 | -5.61 | 0.55 | 0.58 | 0.25 | 4.0 | 0.003 | 0.82 | 0.0 | 0.04 | 18.26 | 0.00 | 2.110 | 14.46 | 0.56 | 10.5 | 89.5 | 0.0 | -2.93 | 1.49 | 0.56 | 0.54 | 0.32 | 40970 | 5062 | 19 | 29 | 6 | 0 | 0 | logfile |
✔ | 7RYE | 24735 | 2022-12-14 | 2021-08-25 | 3.9 | 4.10 | — | 4.0 | 0.003 | 0.65 | 0.0 | 0.04 | 14.57 | 0.00 | 2.090 | 14.13 | 0.00 | 3.7 | 96.3 | 0.0 | 1.07 | 0.76 | 0.69 | -0.18 | 4.0 | 0.004 | 0.75 | 0.0 | 0.04 | 17.54 | 0.00 | 2.153 | 16.47 | 0.83 | 4.2 | 95.8 | 0.0 | 1.23 | 1.10 | 0.81 | 0.80 | 0.32 | 19708 | 2535 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QFP | 13946 | 2022-12-12 | 2021-12-06 | 3.7 | 4.43 | 3.74 | 4.1 | 0.007 | 1.11 | 4.0 | 0.08 | 15.77 | 0.01 | 2.167 | 19.15 | 4.14 | 12.5 | 86.9 | 0.6 | -4.48 | 0.84 | 0.72 | 0.85 | 4.1 | 0.003 | 0.78 | 0.0 | 0.05 | 16.86 | 0.00 | 2.104 | 17.43 | 0.44 | 12.7 | 87.2 | 0.1 | -2.87 | 0.80 | 0.85 | 0.76 | 0.32 | 9996 | 1233 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KNi | 22950 | 2022-12-20 | 2020-11-04 | 3.91 | 4.86 | 4.13 | 3.9 | 0.003 | 0.61 | 0.0 | 0.05 | 14.27 | 0.01 | 2.045 | 4.31 | 0.07 | 4.4 | 95.6 | 0.0 | -1.75 | 0.77 | 0.56 | 0.26 | 4.0 | 0.005 | 0.75 | 0.0 | 0.05 | 15.93 | 0.00 | 2.044 | 23.96 | 0.35 | 7.5 | 92.5 | 0.0 | -1.15 | 1.45 | 0.84 | 0.74 | 0.32 | 39574 | 4878 | 18 | 0 | 68 | 0 | 0 | logfile |