Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7CR7	30448	2021-08-08	2020-08-12	3.7	3.92	—	3.8	0.008	0.79	0.0	0.04	14.07	0.00	1.825	91.45	0.00	5.6	94.2	0.2	-3.89	0.64	0.69	0.59	3.8	0.004	0.89	0.0	0.04	17.25	0.00	2.079	17.95	0.30	3.7	96.3	0.0	0.24	1.88	0.63	0.70	0.23	16136	1988	12	0	4	0	0	logfile
✔	6QZF	4685	2021-08-10	2019-03-11	3.8	4.25	—	4.1	0.010	1.06	0.0	0.06	10.18	0.01	2.143	10.25	0.16	9.8	90.1	0.0	-4.87	0.67	0.72	0.54	4.1	0.006	0.98	0.0	0.05	17.27	0.01	1.999	28.73	1.53	9.8	90.2	0.0	-1.98	1.78	0.67	0.73	0.26	71628	8880	60	0	0	0	0	logfile
✔	5KPS	8279	2021-08-16	2016-07-05	3.9	5.38	4.05	3.9	0.008	1.11	0.0	0.08	13.49	0.01	1.923	26.94	0.32	12.5	82.8	4.6	-4.23	0.90	0.78	0.50	3.9	0.009	0.88	1.0	0.04	16.48	0.01	1.599	43.41	0.70	10.7	88.5	0.7	-2.12	2.56	0.95	0.90	0.26	149128	6091	58	4734	0	0	0	logfile
✔	7KY5	23068	2021-08-08	2020-12-07	3.98	4.52	—	4.3	0.010	0.72	0.0	0.24	12.96	0.01	2.200	16.32	0.07	6.6	93.4	0.0	-1.06	0.72	0.75	0.32	4.3	0.003	0.82	0.0	0.08	15.36	0.00	1.852	18.85	0.89	6.1	93.9	0.0	-0.95	1.08	0.73	0.77	0.27	12483	1534	6	0	15	0	0	logfile
✔	6oUo	20204	2021-08-14	2019-05-05	3.7	4.99	—	3.3	0.007	0.83	1.0	0.04	15.93	0.02	1.584	12.03	0.36	5.1	94.8	0.1	-3.86	0.89	0.75	0.10	3.3	0.005	0.79	0.0	0.04	17.15	0.01	1.906	34.88	0.91	6.1	93.9	0.0	-1.63	3.93	0.92	0.84	0.27	146867	6028	61	4642	14	0	0	logfile
✔	6S3R	10095	2021-08-08	2019-06-25	3.5	3.63	3.52	3.6	0.006	0.89	0.0	0.05	15.34	0.01	2.035	17.92	2.22	8.4	90.8	0.8	-3.03	0.65	0.79	1.05	3.6	0.011	1.22	0.0	0.04	17.39	0.01	2.080	16.42	0.49	7.4	92.6	0.1	1.10	1.82	0.65	0.79	0.27	12855	1669	11	0	0	0	0	logfile
✔	7oPE	13017	2021-08-12	2021-05-31	3.2	5.30	3.21	5.0	0.011	1.04	2.0	0.06	15.48	0.01	1.028	4.79	0.23	8.2	91.6	0.2	-3.62	0.89	0.72	-0.03	5.0	0.005	0.80	1.0	0.04	17.55	0.01	1.504	32.54	0.77	7.5	92.4	0.1	-1.68	1.99	0.93	0.87	0.28	93862	3818	33	2996	0	0	0	logfile
✔	6YUF	10930	2021-08-09	2020-04-27	3.94	4.30	4.21	4.1	0.018	1.70	8.0	0.08	18.03	0.01	2.033	13.13	0.24	8.9	91.1	0.0	-3.37	0.77	0.75	0.41	4.2	0.004	0.80	0.0	0.04	18.87	0.00	1.131	14.49	0.34	7.1	92.9	0.0	-0.74	0.72	0.78	0.77	0.30	19528	2264	8	64	4	0	0	logfile
✔	3J89	6123	2021-08-07	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	0.00	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.003	0.46	0.0	0.03	20.47	0.00	2.143	7.98	0.75	0.2	99.8	0.0	4.21	2.00	0.81	0.79	0.30	9025	551	19	0	0	0	4598	logfile
✔	5KPX	8282	2021-08-18	2016-07-05	3.9	5.30	4.08	3.8	0.008	1.18	6.0	0.09	14.40	0.01	2.087	29.47	0.58	13.2	80.2	6.6	-4.56	0.90	0.77	0.50	4.0	0.006	0.81	3.0	0.04	16.66	0.01	1.921	38.07	1.04	11.0	88.0	1.0	-2.20	1.12	0.94	0.90	0.30	154603	6623	59	4812	0	0	0	logfile
✔	5KPW	8281	2021-08-18	2016-07-05	3.9	5.27	4.08	3.8	0.007	1.11	5.0	0.09	13.85	0.01	2.191	23.72	0.79	12.9	81.4	5.7	-4.53	0.90	0.77	0.51	3.9	0.005	0.76	0.0	0.04	16.49	0.01	1.980	35.53	0.96	11.6	87.6	0.8	-2.31	1.81	0.95	0.90	0.31	154603	6623	59	4812	0	0	0	logfile
✔	5A8L	3099	2021-08-08	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	8.77	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.010	1.15	1.0	0.04	17.67	0.01	1.967	18.83	0.38	9.6	89.1	1.3	-2.56	1.91	0.23	0.62	0.31	12264	624	9	347	0	0	0	logfile
✔	7CG4	30350	2021-08-08	2020-06-30	3.6	4.04	—	3.9	0.003	0.69	0.0	0.04	14.90	0.00	2.192	7.42	0.34	5.1	94.9	0.0	-2.88	0.49	0.77	0.53	4.0	0.012	1.19	1.0	0.04	17.60	0.01	2.147	9.75	0.76	4.7	95.2	0.1	1.49	1.47	0.45	0.76	0.32	10943	1419	11	0	0	0	0	logfile
✔	6RED	4850	2021-08-10	2019-04-12	3.0	3.22	3.14	27.0	0.012	1.05	0.0	0.06	14.48	0.01	2.140	5.83	0.31	4.7	95.2	0.1	-3.86	0.16	0.02	0.19	27.0	0.008	0.99	0.0	0.05	16.22	0.01	1.891	20.83	2.47	4.9	95.0	0.1	-1.40	1.53	0.25	0.17	0.32	33899	4503	25	0	10	0	0	logfile
✔	6UKT	20812	2021-08-07	2019-10-05	3.87	4.71	—	4.3	0.007	1.02	0.0	0.06	16.90	0.01	2.247	10.29	0.46	15.8	84.2	0.0	-5.03	0.89	0.80	0.36	4.3	0.004	0.76	0.0	0.04	17.78	0.01	2.133	15.69	0.46	11.0	89.0	0.0	-2.62	0.61	0.90	0.85	0.32	8979	1204	6	0	0	0	0	logfile
✔	6Q2S	20579	2021-08-08	2019-08-08	3.8	4.19	—	4.0	0.007	1.06	0.0	0.06	8.58	0.01	1.366	3.88	0.13	7.6	92.4	0.0	-4.58	0.64	0.51	0.55	4.0	0.004	0.80	0.0	0.04	14.24	0.01	2.060	15.74	0.40	5.5	94.5	0.0	-1.80	1.94	0.74	0.70	0.33	13726	1734	10	0	22	0	0	logfile
✔	5L4K	4002	2021-08-11	2016-05-25	3.9	4.00	—	4.2	0.007	0.85	3.0	0.05	16.12	0.01	1.808	4.46	3.82	11.8	85.0	3.2	-6.15	0.34	0.64	0.39	4.0	0.007	0.96	0.0	0.04	17.33	0.01	1.408	29.88	0.53	10.3	89.1	0.6	-2.85	1.80	0.38	0.71	0.33	79649	5000	12	0	0	0	39990	logfile
✔	6DNC	7970	2021-08-17	2018-06-06	3.7	6.35	—	4.1	0.008	1.14	2.0	0.09	13.50	0.01	1.764	6.76	1.11	13.5	84.5	2.0	-4.52	0.87	0.73	0.26	4.1	0.006	0.77	0.0	0.04	17.00	0.01	1.916	39.35	0.53	10.6	89.3	0.2	-1.83	3.13	0.96	0.91	0.33	152438	6520	59	4735	0	0	0	logfile
✔	7A24	11615	2021-08-11	2020-08-16	3.8	3.92	—	3.8	0.009	1.17	33.0	1.08	14.86	0.01	0.850	22.54	2.62	9.6	90.1	0.3	-3.10	0.53	0.47	0.12	3.8	0.014	1.93	1.0	0.33	17.57	0.01	1.546	30.44	0.25	9.2	90.7	0.1	-2.24	1.24	0.60	0.61	0.34	49497	6253	46	0	17	0	0	logfile
✔	6PMi	20394	2021-08-08	2019-07-02	3.86	4.66	—	4.1	0.012	1.26	0.0	0.06	15.81	0.01	1.949	12.17	0.24	10.7	88.9	0.4	-4.48	0.69	0.51	0.20	4.1	0.007	0.87	0.0	0.04	17.51	0.00	1.724	27.16	0.31	9.7	90.1	0.1	-2.20	1.43	0.86	0.78	0.35	57985	3453	10	110	4	0	28610	logfile

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