Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6YUF	10930	2022-07-04	2020-04-27	3.94	4.30	4.21	4.1	0.018	1.71	8.0	0.08	18.03	0.01	2.033	13.36	0.24	8.9	91.1	0.0	-3.37	0.77	0.75	0.41	4.2	0.004	0.80	0.0	0.04	19.05	0.00	1.386	14.55	0.19	7.3	92.7	0.0	-0.88	0.64	0.78	0.76	0.20	19528	2264	8	64	4	0	0	logfile
✔	6CB8	7449	2022-07-06	2018-02-02	3.8	4.11	—	4.7	0.006	0.84	0.0	0.05	11.53	0.01	1.542	37.70	0.00	18.6	81.4	0.0	-5.72	0.54	0.27	0.20	4.0	0.011	0.99	1.0	0.04	15.21	0.01	1.760	22.20	0.27	11.3	88.7	0.0	-3.56	1.96	0.64	0.51	0.20	100224	6210	27	0	27	0	50436	logfile
✔	6Z3A	11055	2022-07-07	2020-05-19	3.8	4.08	—	3.8	0.007	1.25	2.0	0.06	12.46	0.01	1.678	11.06	1.08	11.1	88.8	0.1	-4.47	0.78	0.75	0.21	3.8	0.006	1.01	0.0	0.05	15.72	0.01	1.971	28.95	0.41	9.6	90.4	0.0	-2.10	2.34	0.80	0.76	0.21	46142	5730	6	0	4	0	0	logfile
✔	7VQ4	32085	2022-07-03	2021-10-19	3.2	3.54	—	3.6	0.007	0.74	0.0	0.04	16.10	0.00	2.155	9.75	2.30	6.6	93.4	0.0	-1.96	0.61	0.79	1.10	3.7	0.003	0.71	0.0	0.04	17.27	0.00	2.163	9.36	0.57	4.4	95.6	0.0	2.94	0.78	0.60	0.79	0.22	6306	800	2	0	0	0	0	logfile
✔	6XSS	22305	2022-07-03	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.34	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.015	1.65	1.0	0.04	17.18	0.01	2.065	21.16	0.36	1.6	98.4	0.0	2.61	1.33	0.75	0.80	0.22	8048	1040	4	0	0	0	0	logfile
✔	7NZM	12665	2022-07-03	2021-03-24	3.96	6.56	4.22	4.2	0.007	1.12	0.0	0.06	13.92	0.01	1.774	11.33	0.00	3.8	96.2	0.0	-1.56	0.77	0.51	-0.04	4.3	0.003	0.72	0.0	0.04	14.93	0.00	2.028	16.63	0.21	2.4	97.6	0.0	0.49	1.48	0.94	0.84	0.23	9109	1157	8	0	4	0	0	logfile
✔	7KY5	23068	2022-07-03	2020-12-07	3.98	4.52	—	4.3	0.003	1.07	0.0	0.05	12.90	0.01	2.200	16.76	0.07	6.6	93.4	0.0	-1.06	0.72	0.75	0.32	4.3	0.004	0.89	0.0	0.05	15.33	0.00	1.578	23.11	0.45	8.0	92.0	0.0	-1.37	1.06	0.73	0.78	0.23	12483	1534	6	0	15	0	0	logfile
✔	5L4K	4002	2022-07-05	2016-05-25	3.9	4.00	—	4.2	0.007	0.85	3.0	0.05	16.12	0.01	1.808	5.08	3.82	11.8	85.0	3.2	-6.15	0.34	0.64	0.39	4.0	0.010	1.05	1.0	0.04	17.35	0.01	1.822	21.96	0.55	9.2	90.3	0.6	-2.49	1.25	0.37	0.69	0.23	79649	5000	12	0	0	0	39990	logfile
✔	7WoT	32658	2022-07-06	2022-01-22	3.73	4.26	—	3.8	0.010	1.69	284.0	0.10	15.82	0.01	1.016	24.11	4.41	9.4	88.4	2.2	-3.07	0.49	0.33	0.06	3.9	0.009	1.00	2.0	0.05	16.48	0.01	1.624	22.10	0.13	9.9	89.8	0.3	-1.23	1.08	0.56	0.44	0.23	133827	17285	24	0	0	0	0	logfile
✔	6U0M	20607	2022-07-07	2019-08-14	3.9	4.53	—	4.3	0.005	1.05	2.0	0.06	16.74	0.01	2.211	9.82	0.47	13.2	86.7	0.2	-5.28	0.81	0.63	-0.08	4.3	0.003	0.81	0.0	0.04	17.45	0.00	2.127	15.02	0.34	9.7	90.3	0.0	-2.86	1.80	0.87	0.78	0.25	41146	5105	16	34	3	0	0	logfile
✔	7K8A	22724	2022-07-03	2020-09-26	3.65	3.57	—	3.7	0.004	0.92	1.0	0.05	13.38	0.01	2.226	16.09	0.17	6.4	93.6	0.0	-1.30	0.40	0.55	0.67	3.7	0.004	0.85	0.0	0.04	15.78	0.01	2.217	13.77	0.51	4.3	95.7	0.0	-0.51	0.48	0.41	0.54	0.25	5513	723	1	0	0	0	0	logfile
✔	3J89	6123	2022-07-03	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	2.11	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.004	0.56	0.0	0.03	20.77	0.01	2.082	10.42	2.01	1.4	98.6	0.0	2.48	1.98	0.81	0.79	0.26	9025	551	19	0	0	0	4598	logfile
✔	6Qi8	4552	2022-07-04	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.30	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.003	0.79	0.0	0.04	17.50	0.00	2.186	11.19	0.38	6.1	93.9	0.0	-1.55	1.45	0.30	0.19	0.26	14789	1907	12	0	6	0	0	logfile
✔	6RED	4850	2022-07-06	2019-04-12	3.0	3.22	3.14	27.0	0.012	1.04	0.0	0.06	14.48	0.01	2.140	5.89	0.31	4.7	95.2	0.1	-3.86	0.16	0.02	0.19	27.0	0.008	0.95	1.0	0.04	16.14	0.01	1.576	21.96	2.38	4.8	95.0	0.2	-1.22	0.93	0.24	0.15	0.26	33899	4503	25	0	10	0	0	logfile
✔	7KNU	22963	2022-07-03	2020-11-06	3.49	4.38	3.61	4.1	0.003	0.64	0.0	0.04	14.11	0.01	2.141	9.64	0.00	4.0	96.0	0.0	-1.59	0.59	0.76	1.17	4.0	0.004	0.78	0.0	0.04	16.12	0.01	2.066	13.73	0.48	3.8	96.2	0.0	-0.48	0.56	0.59	0.77	0.27	3809	467	3	0	0	0	0	logfile
✔	6Q2S	20579	2022-07-04	2019-08-08	3.8	4.19	—	4.0	0.007	1.05	0.0	0.06	8.58	0.01	1.366	3.84	0.13	7.6	92.4	0.0	-4.58	0.64	0.51	0.55	4.1	0.003	0.77	0.0	0.04	14.36	0.00	2.027	13.27	0.53	5.1	94.9	0.0	-1.95	1.84	0.73	0.69	0.28	13726	1734	10	0	22	0	0	logfile
✔	7oPE	13017	2022-07-06	2021-05-31	3.2	5.30	3.21	5.0	0.011	1.04	2.0	0.06	15.48	0.01	1.028	4.88	0.23	8.2	91.6	0.2	-3.62	0.89	0.72	-0.03	5.0	0.006	0.81	1.0	0.04	17.27	0.01	1.504	31.70	0.93	8.2	91.7	0.1	-1.76	1.09	0.93	0.87	0.28	93862	3818	33	2996	0	0	0	logfile
✔	6NPY	0476	2022-07-03	2019-01-18	3.8	4.03	—	3.8	0.006	1.16	0.0	0.06	16.44	0.01	2.244	8.65	0.84	14.6	85.3	0.1	-4.90	0.79	0.71	0.51	3.8	0.005	0.96	0.0	0.05	17.26	0.01	2.126	25.21	0.72	13.5	86.5	0.0	-2.55	1.81	0.79	0.72	0.29	7586	965	3	0	1	0	0	logfile
✔	7RX0	24721	2022-07-03	2021-08-20	3.89	4.63	—	4.5	0.006	0.85	1.0	0.05	15.16	0.00	1.666	29.33	0.00	7.1	92.9	0.0	-2.61	0.60	0.82	0.77	4.5	0.003	0.86	0.0	0.04	17.06	0.01	2.020	20.94	0.61	4.2	95.8	0.0	-0.63	1.54	0.58	0.81	0.29	9673	1182	7	0	83	0	0	logfile
✔	7FG3	31577	2022-07-03	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.34	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.009	0.98	0.0	0.05	16.79	0.01	2.094	24.09	0.30	15.7	83.7	0.6	-3.71	0.78	0.23	0.45	0.29	9054	1166	2	0	0	0	0	logfile

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