Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XSS	22305	2022-12-11	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.34	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.003	0.80	0.0	0.04	16.91	0.00	2.278	17.30	0.24	1.0	99.0	0.0	2.54	1.34	0.75	0.79	0.21	8048	1040	4	0	0	0	0	logfile
✔	7VUJ	32130	2022-12-12	2021-11-02	3.8	2.78	—	2.1	0.005	0.74	0.0	0.05	13.50	0.01	1.960	19.84	0.00	6.0	93.9	0.1	-0.35	0.64	0.63	0.83	3.1	0.003	0.76	0.0	0.05	16.42	0.00	1.997	20.14	0.67	6.0	93.9	0.1	-0.87	0.62	0.65	0.64	0.22	8286	1034	7	1	2	0	0	logfile
✔	7NZM	12665	2022-12-12	2021-03-24	3.96	6.56	4.22	4.2	0.007	1.12	0.0	0.06	13.92	0.01	1.774	11.33	0.00	3.8	96.2	0.0	-1.56	0.77	0.51	-0.04	4.3	0.003	0.74	0.0	0.04	14.94	0.00	2.099	15.51	0.10	2.5	97.5	0.0	0.33	1.48	0.94	0.83	0.23	9109	1157	8	0	4	0	0	logfile
✔	6Xi8	22191	2022-12-11	2020-06-19	3.64	2.63	3.78	2.0	0.010	1.69	4.0	0.11	15.20	0.01	1.333	6.79	0.77	9.0	91.0	0.0	-4.62	0.66	0.54	0.71	2.0	0.004	0.96	0.0	0.05	17.05	0.01	2.101	19.76	1.74	7.2	92.8	0.0	-2.47	1.26	0.69	0.64	0.24	5022	636	4	0	2	0	0	logfile
✔	7RP6	24613	2022-12-11	2021-08-03	3.78	3.85	—	3.8	0.006	0.96	0.0	0.06	14.85	0.01	2.334	5.72	0.59	5.7	94.3	0.0	-4.72	0.69	0.82	1.37	3.8	0.003	0.72	0.0	0.04	16.43	0.00	2.120	11.29	0.89	4.2	95.8	0.0	-0.09	1.18	0.66	0.81	0.26	6753	900	2	0	0	0	0	logfile
✔	3J89	6123	2022-12-12	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	2.11	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.004	0.56	0.0	0.03	20.77	0.01	2.082	10.42	2.01	1.4	98.6	0.0	2.48	1.98	0.81	0.79	0.26	9025	551	19	0	0	0	4598	logfile
✔	7W6T	32335	2022-12-16	2021-12-02	3.85	4.45	—	3.9	0.006	0.87	0.0	0.05	14.59	0.01	2.034	32.87	0.29	10.7	89.2	0.1	-4.74	0.64	0.67	0.30	3.9	0.003	0.77	0.0	0.04	16.03	0.00	1.997	23.42	0.23	7.0	93.0	0.0	-1.58	0.74	0.63	0.64	0.26	31768	3934	10	0	0	0	0	logfile
✔	8DGi	27423	2022-12-13	2022-06-23	3.94	4.27	4.04	4.1	0.005	1.16	4.0	0.06	15.93	0.01	2.263	8.97	0.67	5.9	93.8	0.3	-2.32	0.67	0.52	0.27	4.1	0.003	0.73	0.0	0.04	16.27	0.00	2.117	19.22	0.40	6.2	93.7	0.1	-0.21	0.56	0.66	0.51	0.27	13580	1690	2	0	0	0	0	logfile
✔	8CSA	26961	2022-12-15	2022-05-12	3.84	4.24	3.87	3.9	0.012	1.75	3.0	0.09	13.74	0.02	2.527	0.32	1.18	6.0	93.8	0.2	-1.46	0.82	0.78	0.63	3.9	0.003	0.65	0.0	0.04	15.04	0.00	2.105	12.38	0.11	3.9	96.1	0.0	-0.01	1.66	0.83	0.79	0.27	23442	3003	3	0	0	0	0	logfile
✔	7oPE	13017	2022-12-17	2021-05-31	3.2	5.30	3.21	5.0	0.011	1.04	2.0	0.06	15.48	0.01	1.028	4.88	0.23	8.2	91.6	0.2	-3.62	0.89	0.72	-0.03	5.0	0.005	0.81	0.0	0.04	17.65	0.01	1.985	36.74	1.51	9.0	90.9	0.1	-1.91	1.82	0.93	0.88	0.28	93862	3818	33	2996	0	0	0	logfile
✔	7KNT	22962	2022-12-11	2020-11-06	3.15	4.00	3.32	3.7	0.004	0.75	0.0	0.05	14.56	0.00	2.116	11.65	0.74	3.6	96.4	0.0	-0.48	0.58	0.75	1.64	3.7	0.003	0.71	0.0	0.04	16.05	0.00	2.229	12.73	0.25	2.7	97.3	0.0	0.57	0.49	0.57	0.75	0.28	3716	455	2	0	0	0	0	logfile
✔	7AS9	11890	2022-12-16	2020-10-27	3.5	4.52	3.51	4.2	0.007	0.98	0.0	0.05	17.12	0.01	1.976	8.28	0.07	13.0	86.6	0.4	-4.86	0.92	0.83	0.18	4.2	0.006	0.86	0.0	0.04	18.30	0.01	1.959	38.41	1.06	12.4	87.5	0.1	-2.90	0.73	0.92	0.84	0.28	93137	3720	32	2999	0	0	0	logfile
✔	6PMJ	20395	2022-12-12	2019-07-02	3.91	5.34	—	4.4	0.011	1.21	0.0	0.06	15.82	0.01	2.011	11.05	0.31	10.4	89.3	0.3	-4.41	0.67	0.43	0.20	4.4	0.003	0.70	0.0	0.04	17.49	0.00	1.825	20.54	0.31	8.2	91.6	0.1	-2.11	1.65	0.89	0.77	0.28	57984	3453	10	110	4	0	28609	logfile
✔	7KY5	23068	2022-12-12	2020-12-07	3.98	4.52	—	4.3	0.003	1.07	0.0	0.05	12.90	0.01	2.200	16.76	0.07	6.6	93.4	0.0	-1.06	0.72	0.75	0.32	4.3	0.003	0.87	0.0	0.05	15.38	0.00	1.943	17.97	0.45	6.2	93.8	0.0	-1.17	1.05	0.73	0.77	0.28	12483	1534	6	0	15	0	0	logfile
✔	6QZF	4685	2022-12-14	2019-03-11	3.8	4.25	—	4.1	0.010	1.06	0.0	0.06	10.18	0.01	2.143	10.35	0.16	9.8	90.1	0.0	-4.87	0.67	0.72	0.54	4.1	0.005	0.94	0.0	0.05	17.06	0.00	2.016	28.21	1.13	9.3	90.7	0.0	-2.07	1.74	0.66	0.72	0.29	71628	8880	60	0	0	0	0	logfile
✔	6MU2	9244	2022-12-22	2018-10-22	3.9	4.63	—	4.5	0.012	2.05	157.0	0.17	15.10	0.01	1.078	54.14	14.66	11.0	87.3	1.7	-1.58	0.70	0.68	0.40	4.5	0.008	1.13	3.0	0.06	15.84	0.01	1.996	35.83	2.85	12.2	87.3	0.5	-0.80	1.02	0.73	0.73	0.32	51404	8680	4	0	0	0	0	logfile
✔	6RAX	4786	2022-12-20	2019-04-08	3.99	4.07	3.97	4.1	0.011	1.46	27.0	0.13	18.03	0.01	1.308	24.00	6.70	19.2	80.3	0.5	-5.61	0.55	0.58	0.25	4.0	0.003	0.82	0.0	0.04	18.26	0.00	2.110	14.46	0.56	10.5	89.5	0.0	-2.93	1.49	0.56	0.54	0.32	40970	5062	19	29	6	0	0	logfile
✔	7RYE	24735	2022-12-14	2021-08-25	3.9	4.10	—	4.0	0.003	0.65	0.0	0.04	14.57	0.00	2.090	14.13	0.00	3.7	96.3	0.0	1.07	0.76	0.69	-0.18	4.0	0.004	0.75	0.0	0.04	17.54	0.00	2.153	16.47	0.83	4.2	95.8	0.0	1.23	1.10	0.81	0.80	0.32	19708	2535	24	0	0	0	0	logfile
✔	7QFP	13946	2022-12-12	2021-12-06	3.7	4.43	3.74	4.1	0.007	1.11	4.0	0.08	15.77	0.01	2.167	19.15	4.14	12.5	86.9	0.6	-4.48	0.84	0.72	0.85	4.1	0.003	0.78	0.0	0.05	16.86	0.00	2.104	17.43	0.44	12.7	87.2	0.1	-2.87	0.80	0.85	0.76	0.32	9996	1233	1	0	0	0	0	logfile
✔	7KNi	22950	2022-12-20	2020-11-04	3.91	4.86	4.13	3.9	0.003	0.61	0.0	0.05	14.27	0.01	2.045	4.31	0.07	4.4	95.6	0.0	-1.75	0.77	0.56	0.26	4.0	0.005	0.75	0.0	0.05	15.93	0.00	2.044	23.96	0.35	7.5	92.5	0.0	-1.15	1.45	0.84	0.74	0.32	39574	4878	18	0	68	0	0	logfile

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