Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K8A	22724	2021-10-03	2020-09-26	3.65	3.57	—	3.7	0.004	0.92	1.0	0.05	13.38	0.01	2.226	15.82	0.17	6.4	93.6	0.0	-1.30	0.40	0.55	0.67	3.7	0.004	0.86	0.0	0.04	16.05	0.01	2.176	14.75	0.34	4.0	95.8	0.1	-0.58	0.53	0.42	0.55	0.24	5513	723	1	0	0	0	0	logfile
✔	7RTT	24688	2021-10-03	2021-08-15	3.5	3.91	—	3.9	0.003	0.54	0.0	0.04	14.95	0.00	2.239	5.02	0.00	3.6	96.4	0.0	2.65	0.60	0.73	1.03	3.9	0.003	0.53	0.0	0.04	16.47	0.00	2.192	6.46	0.30	4.3	95.7	0.0	3.68	1.65	0.61	0.74	0.24	6268	791	8	0	14	0	0	logfile
✔	6H5i	0140	2021-10-03	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.63	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.8	0.011	1.09	1.0	0.04	15.65	0.01	1.554	23.80	0.08	4.8	95.2	0.0	0.00	2.11	0.40	0.29	0.25	43900	5392	26	0	0	0	0	logfile
✔	6DNC	7970	2021-10-12	2018-06-06	3.7	6.35	—	4.1	0.008	1.14	2.0	0.09	13.50	0.01	1.764	6.76	1.11	13.5	84.5	2.0	-4.52	0.87	0.73	0.26	4.1	0.009	0.91	0.0	0.04	17.32	0.01	1.886	52.34	1.02	11.5	88.3	0.2	-2.06	3.13	0.96	0.91	0.25	152438	6520	59	4735	0	0	0	logfile
✔	6QZF	4685	2021-10-05	2019-03-11	3.8	4.25	—	4.1	0.010	1.06	0.0	0.06	10.18	0.01	2.143	10.25	0.16	9.8	90.1	0.0	-4.87	0.67	0.72	0.54	4.1	0.006	0.98	0.0	0.05	17.27	0.01	1.999	28.73	1.53	9.8	90.2	0.0	-1.98	1.78	0.67	0.73	0.26	71628	8880	60	0	0	0	0	logfile
✔	6CXC	7774	2021-10-04	2018-04-02	3.9	4.14	—	4.0	0.006	1.02	0.0	0.06	10.95	0.01	2.198	9.05	0.29	6.2	93.8	0.0	-4.06	0.71	0.71	0.12	4.0	0.003	0.81	0.0	0.05	16.17	0.00	2.138	20.63	0.29	6.5	93.5	0.0	-1.82	2.18	0.73	0.76	0.26	15196	1945	18	0	6	0	0	logfile
✔	6S3R	10095	2021-10-04	2019-06-25	3.5	3.63	3.52	3.6	0.006	0.89	0.0	0.05	15.34	0.01	2.035	17.92	2.22	8.4	90.8	0.8	-3.03	0.65	0.79	1.05	3.6	0.011	1.22	0.0	0.04	17.39	0.01	2.080	16.42	0.49	7.4	92.6	0.1	1.10	1.82	0.65	0.79	0.27	12855	1669	11	0	0	0	0	logfile
✔	6Q97	4476	2021-10-13	2018-12-17	3.9	3.69	—	20.0	0.011	1.20	0.0	0.16	18.93	0.02	1.320	6.98	0.38	10.1	89.8	0.1	-5.34	0.15	0.01	0.22	3.6	0.007	0.97	3.0	0.05	20.92	0.01	1.102	23.06	0.06	9.1	90.9	0.0	-3.79	2.62	0.31	0.25	0.27	156609	6124	72	5051	441	2	0	logfile
✔	7oPE	13017	2021-10-07	2021-05-31	3.2	5.30	3.21	5.0	0.011	1.04	2.0	0.06	15.48	0.01	1.028	4.79	0.23	8.2	91.6	0.2	-3.62	0.89	0.72	-0.03	5.0	0.008	0.82	1.0	0.04	17.72	0.01	1.527	34.47	0.97	7.1	92.8	0.1	-1.69	2.00	0.93	0.87	0.28	93862	3818	33	2996	0	0	0	logfile
✔	3J89	6123	2021-10-03	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	0.00	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.003	0.46	0.0	0.03	20.47	0.00	2.143	7.98	0.75	0.2	99.8	0.0	4.21	2.00	0.81	0.79	0.30	9025	551	19	0	0	0	4598	logfile
✔	6VQU	21357	2021-10-04	2020-02-05	3.88	4.99	3.94	4.1	0.007	0.94	0.0	0.06	14.62	0.01	2.276	5.14	1.70	3.4	96.6	0.0	-2.26	0.73	0.86	0.46	4.1	0.003	0.73	0.0	0.04	15.01	0.00	2.185	13.65	0.43	2.7	97.3	0.0	2.03	1.08	0.73	0.87	0.30	9156	1178	2	0	0	0	0	logfile
✔	6YUF	10930	2021-10-04	2020-04-27	3.94	4.30	4.21	4.1	0.018	1.70	8.0	0.08	18.03	0.01	2.033	13.13	0.24	8.9	91.1	0.0	-3.37	0.77	0.75	0.41	4.2	0.005	0.80	0.0	0.04	19.06	0.00	1.732	13.95	0.24	7.0	93.0	0.0	-0.68	0.72	0.78	0.76	0.30	19528	2264	8	64	4	0	0	logfile
✔	7EGB	31111	2021-10-04	2021-03-24	3.3	3.51	—	34.0	0.008	1.11	62.0	0.07	15.42	0.01	1.322	20.78	3.22	7.3	91.9	0.8	-3.64	0.32	0.02	0.13	3.1	0.010	1.19	6.0	0.06	17.01	0.01	1.783	28.02	0.43	9.0	90.7	0.3	-1.51	1.27	0.42	0.23	0.30	113098	13887	63	138	18	0	0	logfile
✔	6RAX	4786	2021-10-07	2019-04-08	3.99	4.07	3.97	4.1	0.011	1.46	27.0	0.13	18.03	0.01	1.308	23.64	6.70	19.2	80.3	0.5	-5.61	0.55	0.58	0.25	4.0	0.011	1.15	4.0	0.05	18.63	0.01	1.587	22.27	0.25	13.1	86.8	0.0	-3.21	1.54	0.58	0.57	0.30	40970	5062	19	29	6	0	0	logfile
✔	5KPS	8279	2021-10-10	2016-07-05	3.9	5.38	4.05	3.9	0.008	1.11	0.0	0.08	13.49	0.01	1.923	26.94	0.32	12.5	82.8	4.6	-4.23	0.90	0.78	0.50	3.9	0.008	0.89	1.0	0.04	16.32	0.01	1.520	48.01	0.97	11.0	88.3	0.8	-2.42	1.97	0.95	0.90	0.30	149128	6091	58	4734	0	0	0	logfile
✔	5L4K	4002	2021-10-06	2016-05-25	3.9	4.00	—	4.2	0.007	0.85	3.0	0.05	16.12	0.01	1.808	4.46	3.82	11.8	85.0	3.2	-6.15	0.34	0.64	0.39	4.0	0.009	0.98	1.0	0.04	17.27	0.01	1.850	15.66	0.44	8.4	91.2	0.5	-1.56	1.82	0.37	0.70	0.30	79649	5000	12	0	0	0	39990	logfile
✔	6NQB	0482	2021-10-07	2019-01-20	3.8	4.35	—	4.0	0.006	0.98	0.0	0.05	17.60	0.01	2.216	7.98	0.41	13.6	86.3	0.1	-5.36	0.86	0.79	0.88	4.0	0.009	0.91	1.0	0.04	18.14	0.01	1.913	28.36	0.55	15.4	84.6	0.1	-3.42	0.72	0.87	0.79	0.30	42570	1752	17	1341	1	0	0	logfile
✔	5A8L	3099	2021-10-04	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	8.77	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.010	1.15	1.0	0.04	17.67	0.01	1.967	18.83	0.38	9.6	89.1	1.3	-2.56	1.91	0.23	0.62	0.31	12264	624	9	347	0	0	0	logfile
✔	7KML	22926	2021-10-06	2020-11-03	3.8	4.97	3.83	3.8	0.018	1.86	0.0	0.10	10.58	0.01	2.415	0.53	0.39	1.9	98.1	0.0	0.45	0.89	0.76	0.63	3.9	0.003	0.73	0.0	0.04	14.34	0.00	2.124	16.79	0.31	4.1	95.8	0.0	-0.03	1.85	0.90	0.82	0.31	35136	4413	39	0	78	0	0	logfile
✔	7CG4	30350	2021-10-03	2020-06-30	3.6	4.04	—	3.9	0.003	0.69	0.0	0.04	14.90	0.00	2.192	7.42	0.34	5.1	94.9	0.0	-2.88	0.49	0.77	0.53	4.0	0.012	1.19	1.0	0.04	17.60	0.01	2.147	9.75	0.76	4.7	95.2	0.1	1.49	1.47	0.45	0.76	0.32	10943	1419	11	0	0	0	0	logfile

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