Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WTD	32779	2023-11-19	2022-02-04	3.9	5.03	—	4.3	0.023	1.20	1.0	0.05	15.55	0.01	0.990	21.59	1.15	7.3	92.6	0.1	-0.88	0.81	0.61	0.10	4.4	0.004	0.94	1.0	0.05	16.56	0.01	2.083	25.45	0.42	8.2	91.8	0.1	-1.39	4.65	0.85	0.72	0.20	27137	3491	6	0	4	0	0	logfile
✔	7AS9	11890	2023-11-21	2020-10-27	3.5	4.52	3.51	4.2	0.007	0.98	0.0	0.05	17.12	0.01	1.976	8.25	0.07	13.0	86.6	0.4	-4.86	0.92	0.83	0.18	4.2	0.005	0.81	0.0	0.04	18.26	0.01	2.035	33.29	0.90	11.8	88.2	0.1	-3.02	0.73	0.92	0.84	0.20	93137	3720	32	2999	0	0	0	logfile
✔	7KNU	22963	2023-11-13	2020-11-06	3.49	4.38	3.61	4.1	0.003	0.64	0.0	0.04	14.11	0.01	2.141	9.25	0.00	4.0	96.0	0.0	-1.59	0.59	0.76	1.17	4.1	0.003	0.71	0.0	0.04	15.88	0.00	2.203	12.95	0.24	4.4	95.6	0.0	-0.32	0.56	0.59	0.76	0.21	3809	467	3	0	0	0	0	logfile
✔	8iPQ	35640	2023-11-16	2023-03-14	3.5	3.94	3.69	3.8	0.004	0.77	2.0	0.05	16.07	0.01	2.209	16.79	0.61	7.2	92.7	0.1	0.55	0.64	0.80	0.45	3.8	0.003	0.75	0.0	0.04	16.49	0.01	2.181	11.61	0.14	7.3	92.5	0.2	0.60	0.74	0.64	0.81	0.21	14456	1996	4	0	0	0	0	logfile
✔	7Yi5	33852	2023-11-19	2022-07-14	3.96	7.42	3.88	2.7	0.005	0.66	0.0	0.04	23.59	0.00	2.006	17.91	0.29	4.5	95.5	0.0	0.33	0.87	0.84	0.30	2.7	0.005	0.63	0.0	0.04	24.06	0.00	2.034	18.72	0.24	4.9	95.1	0.0	0.72	1.19	0.87	0.84	0.21	25389	2364	18	302	5	0	0	logfile
✔	7NCi	12267	2023-11-15	2021-01-28	3.55	3.67	3.44	4.0	0.012	1.57	2.0	0.10	15.57	0.01	2.481	0.35	0.00	8.9	91.1	0.0	-3.74	0.68	0.59	1.81	4.0	0.004	0.64	2.0	0.05	14.88	0.00	1.935	18.73	1.48	13.7	86.3	0.0	-4.29	1.57	0.67	0.62	0.22	11292	816	12	0	0	0	5796	logfile
✔	7XUN	33475	2023-11-13	2022-05-19	3.4	3.91	3.41	3.8	0.002	0.57	0.0	0.04	13.72	0.00	2.129	11.02	0.00	4.1	95.9	0.0	-0.92	0.72	0.76	0.33	3.8	0.003	0.72	0.0	0.05	15.95	0.00	2.159	12.95	0.33	4.9	95.1	0.0	-0.13	1.11	0.72	0.77	0.22	5591	741	1	0	0	0	0	logfile
✔	7KY5	23068	2023-11-15	2020-12-07	3.98	4.52	—	4.3	0.004	1.09	0.0	0.05	12.78	0.01	2.200	16.72	0.07	6.6	93.4	0.0	-1.06	0.72	0.75	0.32	4.3	0.004	0.87	0.0	0.04	15.20	0.00	1.967	21.02	0.74	7.9	92.1	0.0	-1.15	1.03	0.73	0.78	0.22	12483	1534	6	0	15	0	0	logfile
✔	7K8A	22724	2023-11-15	2020-09-26	3.65	3.57	—	3.7	0.004	0.92	1.0	0.05	13.38	0.01	2.226	16.09	0.17	6.4	93.6	0.0	-1.30	0.40	0.55	0.67	3.7	0.003	0.78	0.0	0.04	15.86	0.01	2.225	15.74	0.34	4.6	95.3	0.1	-0.56	0.46	0.42	0.55	0.22	5513	723	1	0	0	0	0	logfile
✔	8GWG	34312	2023-11-18	2022-09-17	3.37	3.96	3.48	7.9	0.009	0.94	5.0	0.06	17.82	0.01	2.045	13.54	5.14	8.4	91.2	0.4	-1.94	0.59	0.16	-0.05	3.4	0.003	0.80	0.0	0.04	17.21	0.00	2.091	18.31	0.61	7.5	92.2	0.3	-1.79	1.70	0.76	0.60	0.23	21955	2668	13	52	9	1	0	logfile
✔	7Yi4	33851	2023-11-19	2022-07-14	3.96	8.09	3.85	2.7	0.004	0.61	0.0	0.04	23.53	0.00	2.041	12.68	0.10	3.9	96.1	0.0	1.12	0.85	0.82	0.23	2.7	0.004	0.61	0.0	0.04	24.00	0.00	2.081	16.66	0.10	4.0	96.0	0.0	1.33	1.60	0.85	0.83	0.23	25351	2359	18	302	5	0	0	logfile
✔	7W0C	32238	2023-11-16	2021-11-18	3.93	4.02	—	3.8	0.002	0.55	0.0	0.04	13.50	0.00	2.105	14.31	0.07	4.2	95.8	0.1	-0.14	0.86	0.73	0.17	3.8	0.003	0.63	0.0	0.04	15.12	0.00	2.164	16.49	0.45	4.6	95.4	0.1	-0.06	0.45	0.86	0.74	0.23	13663	1492	5	72	2	0	0	logfile
✔	7YG0	33803	2023-11-15	2022-07-09	3.75	4.38	3.91	6.5	0.005	0.93	1.0	0.05	14.36	0.00	2.222	25.32	1.19	8.0	92.0	0.0	-1.07	0.59	0.54	0.45	6.5	0.004	0.95	0.0	0.05	15.92	0.00	2.114	27.70	0.49	5.4	94.5	0.1	-0.73	2.16	0.67	0.73	0.24	13336	1708	2	0	0	0	0	logfile
✔	7QFP	13946	2023-11-14	2021-12-06	3.7	4.43	3.74	4.1	0.007	1.11	4.0	0.08	15.77	0.01	2.167	19.15	4.14	12.5	86.9	0.6	-4.48	0.84	0.72	0.85	4.1	0.003	0.77	0.0	0.05	16.83	0.00	2.118	16.48	0.44	11.9	88.0	0.1	-2.89	0.77	0.85	0.76	0.24	9996	1233	1	0	0	0	0	logfile
✔	7ZPJ	14855	2023-11-18	2022-04-27	3.81	3.24	3.86	6.5	0.004	0.86	0.0	0.05	13.19	0.01	2.159	2.94	0.67	3.3	96.7	0.0	0.22	0.54	0.33	0.15	2.2	0.003	0.68	0.0	0.04	15.41	0.01	1.919	13.12	0.67	4.4	95.6	0.0	-0.01	1.51	0.64	0.57	0.25	23479	1355	3	55	0	0	11508	logfile
✔	7EGB	31111	2023-11-14	2021-03-24	3.3	3.51	—	34.0	0.008	1.11	62.0	0.07	15.43	0.01	1.322	21.13	3.22	7.3	91.9	0.8	-3.64	0.32	0.02	0.13	3.0	0.006	0.97	0.0	0.05	16.75	0.01	1.840	21.35	0.38	8.6	91.2	0.2	-1.17	1.17	0.43	0.22	0.25	113098	13887	63	138	18	0	0	logfile
✔	6XSS	22305	2023-11-14	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.34	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.003	0.80	0.0	0.04	16.96	0.00	2.251	16.62	0.49	0.9	99.1	0.0	2.42	1.33	0.74	0.79	0.26	8048	1040	4	0	0	0	0	logfile
✔	6VQU	21357	2023-11-17	2020-02-05	3.88	4.99	3.94	4.1	0.007	0.94	0.0	0.06	14.62	0.01	2.276	5.09	1.70	3.4	96.6	0.0	-2.26	0.73	0.86	0.46	4.1	0.003	0.72	0.0	0.04	14.96	0.00	2.196	12.02	0.32	2.6	97.4	0.0	2.01	1.05	0.73	0.88	0.26	9156	1178	2	0	0	0	0	logfile
✔	8CSA	26961	2023-11-18	2022-05-12	3.84	4.24	3.87	3.9	0.012	1.75	3.0	0.09	13.74	0.02	2.527	0.19	1.18	6.0	93.8	0.2	-1.46	0.82	0.78	0.63	3.9	0.004	0.67	0.0	0.04	15.01	0.00	2.101	12.64	0.23	4.2	95.8	0.0	0.02	1.66	0.83	0.79	0.26	23442	3003	3	0	0	0	0	logfile
✔	6UKT	20812	2023-11-14	2019-10-05	3.87	4.71	—	4.3	0.007	1.03	0.0	0.06	16.89	0.01	2.247	10.29	0.46	15.8	84.2	0.0	-5.03	0.89	0.80	0.36	4.3	0.003	0.71	0.0	0.04	17.55	0.00	2.116	15.46	0.11	12.1	87.9	0.0	-2.31	0.57	0.90	0.84	0.27	8979	1204	6	0	0	0	0	logfile

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