Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XHA	33192	2023-04-21	2022-04-07	3.35	3.57	3.29	3.5	0.008	1.06	4.0	0.07	11.41	0.01	1.860	7.27	0.28	4.7	95.2	0.1	-3.53	0.69	0.78	2.40	3.5	0.003	0.62	0.0	0.04	15.15	0.00	1.117	8.85	0.19	3.7	96.3	0.0	0.52	1.24	0.72	0.82	2.12	10102	1270	5	0	3	0	0	logfile
✔	6PEK	20327	2023-04-22	2019-06-20	4.2	4.25	—	4.2	0.005	0.73	0.0	0.03	13.79	0.00	1.913	4.42	0.00	0.8	99.2	0.0	-2.47	0.70	0.74	—	4.2	0.003	0.74	0.0	0.04	14.87	0.00	1.129	14.37	0.00	3.0	97.0	0.0	-0.34	0.99	0.71	0.77	—	11106	1405	11	0	13	0	0	logfile
✔	6B6H	7059	2023-04-27	2017-10-02	3.9	4.15	—	3.7	0.008	0.96	0.0	0.05	15.91	0.01	1.944	6.23	0.03	8.9	91.0	0.2	-4.47	0.71	0.48	1.58	3.8	0.004	0.67	0.0	0.04	17.34	0.00	1.132	13.86	0.28	8.5	91.4	0.0	-1.79	1.53	0.84	0.64	1.47	72070	4188	15	178	6	0	35400	logfile
✔	6oAA	0666	2023-04-25	2019-03-15	4.1	4.22	4.19	4.2	0.006	1.06	1.0	0.05	16.65	0.01	1.317	13.46	0.34	8.3	91.5	0.3	-5.52	0.63	0.70	—	4.2	0.003	0.85	0.0	0.05	15.49	0.00	1.132	14.72	0.00	9.4	90.4	0.1	-2.19	0.88	0.66	0.75	—	19546	2494	10	0	14	0	0	logfile
✔	6ZoL	11322	2023-04-27	2020-07-07	2.8	3.00	2.78	2.9	0.003	0.55	0.0	0.04	14.47	0.00	1.309	4.02	1.49	3.0	97.0	0.0	0.69	0.75	0.87	3.29	3.0	0.003	0.57	0.0	0.04	16.43	0.00	1.136	5.15	2.57	3.1	96.9	0.0	0.64	3.08	0.76	0.88	2.77	25591	1944	22	472	59	0	0	logfile
✔	7JMF	22392	2023-04-24	2020-07-31	4.5	5.06	—	4.7	0.005	0.98	0.0	0.05	10.23	0.01	1.373	8.08	0.36	11.2	88.6	0.2	-4.91	0.54	0.27	—	7.7	0.004	0.94	0.0	0.05	11.59	0.01	1.145	21.14	0.00	11.3	88.5	0.2	-3.66	1.53	0.76	0.56	—	120756	13500	12	0	3608	0	0	logfile
✔	3J9S	6272	2023-04-21	2015-02-19	2.6	3.83	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.216	25.10	6.86	1.3	98.0	0.8	1.97	0.68	0.76	3.15	3.5	0.003	0.62	0.0	0.04	17.43	0.00	1.145	9.20	1.43	1.5	98.5	0.0	1.37	1.90	0.70	0.89	3.19	9813	1191	3	0	15	315	0	logfile
✔	7Y04	33537	2023-04-22	2022-06-03	3.5	4.03	—	4.0	0.004	0.76	0.0	0.04	15.69	0.00	2.217	6.36	0.75	4.7	95.3	0.0	-2.60	0.57	0.66	2.70	4.0	0.003	0.62	0.0	0.04	16.45	0.00	1.145	6.40	0.52	4.0	96.0	0.0	-1.50	1.57	0.63	0.73	2.32	12050	1475	7	0	4	0	0	logfile
✔	6ZMW	11302	2023-04-23	2020-07-04	3.7	3.79	3.57	3.7	0.008	1.25	0.0	0.06	16.23	0.02	1.291	7.20	2.46	6.4	93.3	0.2	-2.63	0.70	0.65	1.27	3.7	0.003	0.78	0.0	0.04	17.05	0.01	1.153	15.83	0.38	5.6	94.3	0.0	-1.44	1.38	0.74	0.74	1.40	118155	11116	62	1822	91	0	0	logfile
✔	8GYW	34378	2023-04-20	2022-09-24	3.9	3.93	3.77	4.0	0.008	1.46	0.0	0.08	15.18	0.02	2.008	6.48	0.30	0.8	99.2	0.0	1.24	0.46	0.73	1.92	3.9	0.003	0.67	0.0	0.04	16.46	0.00	1.170	13.03	1.21	1.7	98.3	0.0	2.64	1.27	0.50	0.76	0.83	6076	760	4	0	6	0	0	logfile
✔	7K0T	22616	2023-04-22	2020-09-05	4.3	4.52	4.29	4.2	0.003	0.65	1.0	0.04	13.80	0.00	1.909	7.65	0.63	7.5	92.4	0.2	-0.19	0.84	0.76	—	4.2	0.036	2.69	59.0	0.11	15.80	0.02	1.195	109.81	0.00	43.4	55.0	1.6	-7.43	1.92	0.86	0.83	—	115905	12820	8	0	3608	0	0	logfile
✔	7KSo	23021	2023-04-22	2020-11-23	3.9	4.08	—	4.0	0.004	0.73	1.0	0.05	11.73	0.00	2.151	3.83	0.29	4.7	95.3	0.0	-3.99	0.68	0.74	1.12	4.0	0.005	0.76	0.0	0.05	15.43	0.00	1.198	14.39	0.59	6.5	93.5	0.0	-1.66	1.53	0.73	0.82	1.59	13075	1690	8	0	8	0	0	logfile
✔	7R43	14261	2023-04-25	2022-02-08	2.4	2.41	—	2.5	0.007	0.79	0.0	0.84	15.03	0.00	1.899	3.40	0.01	2.5	97.4	0.0	0.39	0.69	0.89	5.73	2.4	0.007	1.30	0.0	0.25	16.38	0.00	1.204	4.60	0.56	1.6	98.4	0.0	1.60	0.31	0.69	0.90	4.85	68334	8188	109	0	47	885	0	logfile
✔	7KTP	23025	2023-04-22	2020-11-24	4.8	4.79	—	4.6	0.005	0.73	0.0	0.05	11.99	0.00	2.221	2.15	0.00	4.5	95.5	0.0	-4.13	0.71	0.69	—	4.6	0.003	0.67	0.0	0.04	12.92	0.00	1.209	15.22	0.00	5.3	94.7	0.0	-0.82	2.61	0.75	0.77	—	12008	1544	5	0	7	0	0	logfile
✔	7oH5	12894	2023-04-22	2021-05-09	2.9	3.43	2.96	3.3	0.006	1.14	0.0	0.04	10.55	0.00	1.656	5.05	1.19	4.6	95.4	0.0	-4.15	0.65	0.75	3.22	3.4	0.003	0.83	0.0	0.04	14.74	0.00	1.236	7.59	1.75	4.0	95.9	0.1	-0.60	2.18	0.68	0.78	2.52	11603	1419	8	0	14	2	0	logfile
✔	5VZL	8749	2023-04-23	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.72	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	17.0	0.002	0.64	0.0	0.04	15.49	0.00	1.241	12.10	0.08	5.0	95.0	0.0	-1.15	1.21	0.38	0.18	0.61	13915	1451	3	115	1	0	0	logfile
✔	7WSQ	32764	2023-04-24	2022-02-01	3.8	3.52	—	3.9	0.038	1.52	0.0	0.45	14.52	0.01	1.827	11.77	0.00	4.9	95.1	0.0	-0.66	0.68	0.75	1.94	3.8	0.004	1.12	0.0	0.06	16.17	0.00	1.249	15.32	0.76	5.6	94.4	0.0	-0.58	1.29	0.69	0.77	1.78	16522	2104	10	0	10	0	0	logfile
✔	7X7N	33042	2023-04-27	2022-03-10	4.47	4.03	4.49	4.2	0.013	1.05	0.0	0.06	14.55	0.01	1.956	29.11	0.52	19.6	80.3	0.1	-5.63	0.73	0.77	—	4.1	0.003	0.75	0.0	0.05	14.04	0.00	1.251	13.68	0.00	8.8	91.2	0.0	-2.53	0.76	0.72	0.76	—	26493	3314	12	0	45	0	0	logfile
✔	6K32	9907	2023-04-22	2019-05-16	3.2	3.73	—	3.8	0.009	1.22	1.0	0.07	11.49	0.01	1.345	10.22	1.25	6.3	93.3	0.3	-4.88	0.28	0.72	1.49	3.7	0.004	0.78	0.0	0.05	16.38	0.00	1.254	13.10	0.77	5.7	94.2	0.0	-1.38	1.36	0.31	0.82	2.33	61364	7723	10	8	6	0	0	logfile
✔	8E5P	27917	2023-04-25	2022-08-22	4.4	9.89	6.01	8.2	0.003	0.64	0.0	0.04	11.32	0.00	1.299	26.66	1.63	1.3	98.4	0.3	-0.83	0.61	0.33	—	8.2	0.003	0.69	0.0	0.04	11.81	0.00	1.266	18.73	0.00	2.8	97.2	0.0	0.85	1.53	0.85	0.77	—	20038	2502	13	8	18	0	0	logfile

• ← previous
• Page 3 of 372
• next →