Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8E5G	27912	2023-09-29	2022-08-22	3.9	4.43	4.33	4.2	0.006	1.05	10.0	0.10	17.24	0.00	1.918	47.42	0.00	9.6	89.9	0.5	-2.33	0.62	0.75	0.01	4.2	0.006	1.07	0.0	0.04	18.44	0.00	1.534	21.21	0.46	11.1	88.5	0.4	-2.68	0.78	0.64	0.77	0.52	9065	1100	5	0	20	0	0	logfile
✔	7W7W	32350	2023-09-28	2021-12-06	3.2	2.98	3.22	3.2	0.003	1.16	0.0	0.04	13.44	0.00	2.051	8.21	0.00	2.9	97.1	0.0	0.82	0.59	0.74	2.05	3.2	0.002	0.84	0.0	0.04	15.74	0.00	1.537	8.97	0.23	3.9	96.1	0.0	0.72	0.38	0.58	0.75	1.99	7870	1018	1	0	2	0	0	logfile
✔	8oo9	17007	2023-09-27	2023-04-04	3.2	2.32	3.17	3.1	0.010	1.70	0.0	0.06	20.61	0.01	1.879	4.84	0.00	2.3	97.7	0.0	-2.21	0.81	0.78	3.72	3.1	0.004	0.65	0.0	0.04	22.05	0.00	1.543	11.07	0.00	2.1	97.9	0.0	-0.69	1.39	0.83	0.81	3.12	4516	439	4	42	3	0	0	logfile
✔	8oKR	16930	2023-09-27	2023-03-29	2.86	3.36	2.66	3.4	0.007	1.56	0.0	0.09	22.91	0.01	1.489	4.96	0.00	0.0	100.0	0.0	-4.51	0.55	0.67	7.31	3.4	0.191	6.68	64.0	0.43	28.26	0.04	1.558	166.46	10.71	46.7	40.0	13.3	-7.58	2.35	0.64	0.88	1.62	1608	168	24	0	0	0	0	logfile
✔	6X5i	22051	2023-09-28	2020-05-26	4.3	4.27	—	4.0	0.060	2.79	0.0	0.16	29.93	0.00	2.206	29.57	0.00	0.0	0.0	0.0	—	0.70	0.70	—	4.0	0.011	1.53	0.0	0.13	24.62	0.00	1.571	57.36	0.00	0.0	0.0	0.0	—	3.30	0.69	0.74	—	4480	70	70	0	280	0	0	logfile
✔	7UUQ	26800	2023-09-27	2022-04-28	3.1	3.45	2.98	3.3	0.014	2.95	0.0	0.06	20.39	0.01	1.865	20.35	0.00	0.0	100.0	0.0	-9.31	0.68	0.85	2.95	3.3	0.118	4.71	11.0	0.23	25.10	0.02	1.642	53.03	1.10	65.5	31.5	3.0	-10.63	0.67	0.73	0.90	3.96	4760	364	98	0	98	0	0	logfile
✔	6PR5	20457	2023-09-30	2019-07-10	3.3	3.71	—	3.6	0.008	0.78	0.0	0.05	22.82	0.00	1.963	13.80	0.71	1.4	98.3	0.3	-3.27	0.76	0.82	2.68	3.6	0.003	0.62	0.0	0.04	23.51	0.00	1.644	10.54	0.12	5.1	94.9	0.0	0.50	1.14	0.75	0.82	2.41	10194	960	10	124	6	0	0	logfile
✔	8B3A	15824	2023-09-27	2022-09-16	3.8	3.66	2.91	4.1	0.009	1.89	0.0	0.10	27.06	0.09	2.613	1.89	0.00	0.0	100.0	0.0	-4.71	0.55	0.64	5.18	4.1	0.077	6.38	29.0	0.43	20.27	0.05	1.653	309.17	6.67	46.7	8.0	45.3	-10.71	2.72	0.41	0.54	3.39	2010	210	30	0	60	0	0	logfile
✔	6VFi	21173	2023-09-29	2020-01-05	4.54	4.63	4.96	4.5	0.018	1.47	0.0	0.09	10.93	0.01	2.449	0.53	0.00	1.3	98.7	0.0	1.21	0.80	0.78	—	4.5	0.003	0.69	0.0	0.04	13.66	0.00	1.654	28.86	0.00	2.9	97.1	0.0	1.43	2.11	0.80	0.80	—	58488	7560	48	0	0	0	0	logfile
✔	7PWG	13681	2023-09-28	2021-10-06	2.75	2.35	—	2.5	0.010	1.07	0.0	0.06	16.06	0.02	1.376	3.78	6.08	4.4	95.6	0.0	-2.19	0.76	0.88	4.64	2.5	0.006	0.87	0.0	0.05	16.54	0.01	1.672	4.28	3.35	3.5	96.5	0.0	-0.30	0.31	0.76	0.87	3.96	109151	5769	105	2722	294	4397	0	logfile
✔	8HAF	34587	2023-09-29	2022-10-26	3.25	2.28	3.09	2.2	0.003	0.82	0.0	0.07	14.58	0.00	1.671	7.15	0.40	2.8	97.2	0.0	0.83	0.70	0.74	2.25	2.1	0.003	0.79	0.0	0.07	15.75	0.00	1.678	8.89	0.60	2.8	97.2	0.0	0.55	0.53	0.77	0.80	2.95	9681	1167	6	0	17	0	0	logfile
✔	7XD3	33134	2023-09-29	2022-03-26	4.05	4.16	—	3.8	0.003	0.62	0.0	0.04	16.04	0.00	1.960	1.21	0.00	0.0	0.0	0.0	—	0.85	0.74	—	3.9	0.007	0.80	0.0	0.04	17.33	0.01	1.680	17.06	0.00	0.0	0.0	0.0	—	1.79	0.87	0.82	—	9062	0	1	423	28	0	0	logfile
✔	7oP1	13011	2023-09-29	2021-05-28	3.7	3.77	—	3.6	0.004	1.16	0.0	0.04	13.67	0.00	1.848	7.11	0.00	4.7	95.3	0.0	-0.69	0.69	0.87	2.43	3.6	0.003	0.55	0.0	0.04	14.97	0.00	1.681	5.18	0.10	3.8	96.2	0.0	0.47	0.30	0.70	0.86	1.63	8744	1098	1	0	3	0	0	logfile
✔	7N72	24217	2023-09-28	2021-06-09	2.5	3.08	2.57	2.9	0.007	1.35	0.0	0.06	13.10	0.01	1.971	6.06	0.00	1.4	98.6	0.0	-0.87	0.72	0.85	3.04	2.9	0.004	0.86	0.0	0.04	14.42	0.00	1.683	5.79	0.40	2.4	97.6	0.0	2.13	0.44	0.67	0.83	3.01	7705	1030	1	0	11	5	0	logfile
✔	7LQF	23484	2023-09-28	2021-02-13	3.8	3.13	—	4.0	0.016	1.46	0.0	0.03	18.37	0.00	2.258	22.81	2.08	0.0	100.0	0.0	-4.77	0.59	0.78	4.63	3.2	0.154	6.37	244.0	0.42	26.01	0.03	1.685	217.72	5.21	66.8	30.1	3.1	-9.48	1.76	0.69	0.86	2.78	5376	512	64	0	0	0	0	logfile
✔	7LQ5	23481	2023-09-28	2021-02-13	3.4	3.53	3.25	3.5	0.013	1.31	0.0	0.07	19.67	0.01	1.857	27.57	0.45	12.9	87.1	0.0	-4.95	0.75	0.77	1.16	3.5	0.005	1.01	0.0	0.05	19.22	0.01	1.711	16.76	2.26	14.1	85.9	0.0	-2.69	1.04	0.76	0.81	1.26	6843	774	6	0	24	0	0	logfile
✔	7M4U	23666	2023-09-27	2021-03-22	2.71	1.78	—	1.6	0.006	0.58	2.0	0.04	14.94	0.02	1.771	4.42	0.20	3.1	96.7	0.2	1.08	0.79	0.76	3.70	1.6	0.005	0.77	0.0	0.04	16.06	0.01	1.721	5.89	2.25	3.6	96.2	0.2	0.58	1.73	0.82	0.81	3.44	51764	2386	27	1528	84	191	0	logfile
✔	5LL6	4071	2023-09-28	2016-07-26	3.9	4.01	—	3.9	0.012	1.50	6.0	0.11	19.04	0.01	0.924	4.96	2.53	10.6	85.7	3.7	-3.86	0.69	0.82	1.20	3.9	0.009	1.02	0.0	0.05	19.15	0.01	1.728	25.33	1.83	13.9	85.1	0.9	-2.96	0.90	0.70	0.81	1.06	55262	3429	20	1325	5	0	0	logfile
✔	7LQE	23483	2023-09-28	2021-02-13	3.4	3.06	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.423	23.27	14.58	0.0	100.0	0.0	-5.94	0.57	0.80	5.06	3.2	0.151	5.20	240.0	0.38	25.46	0.02	1.745	134.94	4.40	60.8	38.2	1.0	-8.67	1.67	0.65	0.89	2.25	6048	576	72	0	0	0	0	logfile
✔	7oDS	12846	2023-09-28	2021-04-30	3.1	3.32	—	3.1	0.002	0.40	0.0	0.03	11.26	0.02	2.009	5.03	0.51	1.2	98.8	0.0	0.91	0.78	0.76	2.42	3.1	0.006	0.79	0.0	0.04	15.02	0.01	1.752	12.55	0.40	3.7	96.3	0.0	0.15	1.70	0.80	0.80	2.23	108339	9371	67	1487	132	0	0	logfile

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