Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RDX	4834	2021-12-01	2019-04-12	3.9	3.93	3.89	3.9	0.010	1.05	0.0	0.06	15.03	0.01	2.050	6.71	0.55	5.8	94.0	0.2	-4.32	0.63	0.79	1.46	3.9	0.011	0.91	2.0	0.04	16.60	0.01	1.687	17.43	0.20	4.2	95.6	0.2	-0.59	1.23	0.64	0.81	1.05	53748	7103	37	0	11	0	0	logfile
✔	6AVB	7008	2021-12-01	2017-09-01	3.9	3.83	—	3.8	0.009	1.13	3.0	0.06	11.81	0.01	2.072	31.04	0.00	12.9	86.8	0.3	-5.00	0.58	0.79	2.72	3.8	0.013	1.48	0.0	0.05	15.45	0.01	1.693	24.30	0.00	11.3	88.7	0.0	-2.30	1.70	0.58	0.80	1.83	8673	1101	6	0	3	0	0	logfile
✔	6PEM	20316	2021-12-01	2019-06-20	3.5	3.59	—	3.5	0.007	0.93	1.0	0.06	13.99	0.01	2.238	2.98	0.39	3.5	96.4	0.0	-5.10	0.82	0.89	2.08	3.5	0.006	0.69	1.0	0.04	15.83	0.00	1.701	6.22	0.17	3.7	96.3	0.0	-0.64	1.77	0.83	0.89	1.76	108033	13503	74	0	0	0	0	logfile
✔	5LMU	4080	2021-12-01	2016-08-01	4.0	4.12	4.00	4.0	0.008	1.44	43.0	0.12	21.32	0.01	1.289	21.15	25.30	12.0	84.2	3.8	-2.57	0.73	0.79	—	4.0	0.008	0.89	1.0	0.04	17.65	0.01	1.707	26.90	0.61	7.0	92.4	0.6	-1.45	1.58	0.75	0.83	—	55195	2550	29	1612	82	0	0	logfile
✔	6PR5	20457	2021-12-02	2019-07-10	3.3	3.71	—	3.6	0.008	0.78	0.0	0.05	22.82	0.00	1.963	13.70	0.71	1.4	98.3	0.3	-3.27	0.76	0.82	2.68	3.6	0.004	0.62	0.0	0.04	23.41	0.00	1.709	10.54	0.35	4.5	95.5	0.0	0.57	1.14	0.76	0.83	2.58	10194	960	10	124	6	0	0	logfile
✔	6REB	4848	2021-12-01	2019-04-12	3.2	3.24	—	3.3	0.011	1.02	0.0	0.06	14.40	0.01	2.140	5.40	0.37	4.8	95.1	0.1	-3.95	0.70	0.84	3.18	3.3	0.008	0.77	1.0	0.04	15.69	0.00	1.711	11.19	0.09	3.7	96.2	0.1	-0.40	1.14	0.72	0.86	2.62	53756	7104	37	0	11	0	0	logfile
✔	6oEU	7795	2021-12-01	2019-03-27	3.5	3.62	—	3.9	0.014	1.89	3.0	0.11	15.00	0.00	2.157	5.92	0.85	10.3	89.6	0.1	-3.81	0.41	0.65	1.69	3.7	0.014	1.42	0.0	0.04	16.64	0.01	1.735	14.63	0.28	8.5	91.4	0.1	-0.52	1.53	0.47	0.69	0.92	7310	964	1	0	8	0	0	logfile
✔	6YSF	10895	2021-12-02	2020-04-22	3.4	3.49	3.31	3.5	0.004	0.77	0.0	0.04	15.31	0.00	1.874	13.85	0.90	8.5	91.5	0.0	-3.39	0.67	0.80	2.12	3.5	0.007	1.04	0.0	0.04	17.42	0.01	1.739	19.52	0.54	8.1	91.9	0.0	-0.25	0.67	0.67	0.80	1.60	10220	1327	7	0	0	0	0	logfile
✔	5W81	8782	2021-12-01	2017-06-21	3.37	3.79	—	3.9	0.008	1.26	1.0	0.06	13.30	0.00	1.940	1.47	0.00	5.1	94.9	0.0	-3.11	0.45	0.60	0.57	3.8	0.013	1.30	1.0	0.04	17.03	0.01	1.754	12.79	0.20	2.8	97.0	0.2	0.06	1.58	0.57	0.82	1.35	9393	1173	1	0	4	0	0	logfile
✔	7EZ2	31386	2021-12-01	2021-06-01	3.05	2.80	—	3.0	0.005	0.56	0.0	0.03	13.90	0.00	1.809	0.92	0.00	0.0	0.0	0.0	—	0.69	0.81	—	2.9	0.007	0.84	0.0	0.05	15.80	0.01	1.754	7.27	0.00	0.0	0.0	0.0	—	1.04	0.70	0.82	—	8698	0	3	406	31	0	0	logfile
✔	6WRF	21882	2021-12-01	2020-04-29	3.14	3.69	—	3.5	0.011	0.86	0.0	0.05	13.25	0.01	1.975	3.32	0.07	1.0	99.0	0.0	-0.92	0.77	0.73	3.20	3.5	0.003	0.53	0.0	0.04	14.88	0.00	1.761	6.58	0.07	4.0	96.0	0.0	0.82	0.61	0.74	0.80	2.58	53851	3450	27	0	11	7	27016	logfile
✔	5XY3	6784	2021-12-01	2017-07-06	3.2	3.24	—	3.2	0.006	1.04	7.0	0.09	17.01	0.00	1.123	6.22	3.45	6.0	92.7	1.3	-3.33	0.61	0.76	2.54	3.2	0.007	0.78	3.0	0.04	16.61	0.01	1.765	9.13	0.20	5.0	94.7	0.4	-1.09	0.61	0.77	0.84	2.24	107145	5917	43	2815	0	0	0	logfile
✔	7oP1	13011	2021-12-01	2021-05-28	3.7	3.77	—	3.6	0.004	0.63	0.0	0.04	13.67	0.00	1.848	7.11	0.00	4.7	95.3	0.0	-0.69	0.69	0.87	2.43	3.6	0.005	0.61	0.0	0.04	15.18	0.00	1.771	5.46	0.21	4.4	95.6	0.0	0.12	0.29	0.71	0.87	1.58	8744	1098	1	0	3	0	0	logfile
✔	6UET	20756	2021-12-01	2019-09-23	4.1	4.91	—	5.1	0.010	1.58	0.0	0.07	17.24	0.02	1.977	4.64	0.00	0.0	0.0	0.0	—	0.62	0.73	—	5.0	0.007	0.97	0.0	0.05	22.75	0.01	1.773	50.21	0.00	0.0	0.0	0.0	—	0.77	0.65	0.80	—	3869	0	1	119	1	0	1291	logfile
✔	7oDR	12845	2021-12-01	2021-04-30	2.9	3.11	—	3.0	0.002	0.40	0.0	0.03	11.10	0.02	1.963	4.95	0.44	1.1	98.9	0.0	0.96	0.74	0.80	3.31	3.0	0.008	0.85	2.0	0.04	15.35	0.01	1.775	12.12	2.47	2.4	97.6	0.0	0.51	1.25	0.76	0.83	2.86	107464	9244	68	1489	135	0	0	logfile
✔	6S6T	10105	2021-12-01	2019-07-03	4.1	4.22	4.17	4.1	0.024	0.97	0.0	0.08	12.90	0.00	1.163	8.25	0.02	5.6	94.4	0.0	-3.19	0.74	0.83	—	4.1	0.004	0.85	0.0	0.05	13.36	0.00	1.777	10.24	0.05	6.3	93.7	0.0	-1.30	1.53	0.74	0.84	—	56543	7304	14	0	17	0	0	logfile
✔	6VCC	21148	2021-12-01	2019-12-20	3.6	3.10	3.54	3.5	0.004	0.66	0.0	0.05	12.50	0.01	2.253	4.58	0.00	3.6	96.4	0.0	-4.54	0.53	0.68	2.77	3.4	0.013	1.40	0.0	0.05	15.54	0.01	1.778	21.63	0.12	3.4	96.6	0.0	-3.05	1.22	0.57	0.73	3.42	7572	936	12	0	0	0	0	logfile
✔	6P48	20246	2021-12-01	2019-05-26	3.2	3.42	2.97	3.5	0.011	1.56	2.0	0.09	16.57	0.01	2.014	22.33	3.53	6.5	92.6	0.9	-6.05	0.59	0.65	1.57	3.5	0.008	1.10	0.0	0.04	17.37	0.01	1.787	20.32	0.28	9.0	90.8	0.2	-2.15	0.76	0.61	0.66	1.58	9936	1208	4	0	2	0	0	logfile
✔	7D6X	30595	2021-12-01	2020-10-02	2.88	3.17	—	3.1	0.032	1.74	4.0	0.41	14.92	0.01	1.988	10.00	0.22	11.7	88.1	0.3	-2.90	0.74	0.88	3.52	3.1	0.013	1.48	0.0	0.06	16.47	0.01	1.789	8.96	2.33	9.8	90.2	0.0	-1.11	0.36	0.74	0.89	3.12	8711	1097	6	0	6	0	0	logfile
✔	6UES	20755	2021-12-01	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.77	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile

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