The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8E5G | 27912 | 2023-09-29 | 2022-08-22 | 3.9 | 4.43 | 4.33 | 4.2 | 0.006 | 1.05 | 10.0 | 0.10 | 17.24 | 0.00 | 1.918 | 47.42 | 0.00 | 9.6 | 89.9 | 0.5 | -2.33 | 0.62 | 0.75 | 0.01 | 4.2 | 0.006 | 1.07 | 0.0 | 0.04 | 18.44 | 0.00 | 1.534 | 21.21 | 0.46 | 11.1 | 88.5 | 0.4 | -2.68 | 0.78 | 0.64 | 0.77 | 0.52 | 9065 | 1100 | 5 | 0 | 20 | 0 | 0 | logfile |
✔ | 7W7W | 32350 | 2023-09-28 | 2021-12-06 | 3.2 | 2.98 | 3.22 | 3.2 | 0.003 | 1.16 | 0.0 | 0.04 | 13.44 | 0.00 | 2.051 | 8.21 | 0.00 | 2.9 | 97.1 | 0.0 | 0.82 | 0.59 | 0.74 | 2.05 | 3.2 | 0.002 | 0.84 | 0.0 | 0.04 | 15.74 | 0.00 | 1.537 | 8.97 | 0.23 | 3.9 | 96.1 | 0.0 | 0.72 | 0.38 | 0.58 | 0.75 | 1.99 | 7870 | 1018 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 8oo9 | 17007 | 2023-09-27 | 2023-04-04 | 3.2 | 2.32 | 3.17 | 3.1 | 0.010 | 1.70 | 0.0 | 0.06 | 20.61 | 0.01 | 1.879 | 4.84 | 0.00 | 2.3 | 97.7 | 0.0 | -2.21 | 0.81 | 0.78 | 3.72 | 3.1 | 0.004 | 0.65 | 0.0 | 0.04 | 22.05 | 0.00 | 1.543 | 11.07 | 0.00 | 2.1 | 97.9 | 0.0 | -0.69 | 1.39 | 0.83 | 0.81 | 3.12 | 4516 | 439 | 4 | 42 | 3 | 0 | 0 | logfile |
✔ | 8oKR | 16930 | 2023-09-27 | 2023-03-29 | 2.86 | 3.36 | 2.66 | 3.4 | 0.007 | 1.56 | 0.0 | 0.09 | 22.91 | 0.01 | 1.489 | 4.96 | 0.00 | 0.0 | 100.0 | 0.0 | -4.51 | 0.55 | 0.67 | 7.31 | 3.4 | 0.191 | 6.68 | 64.0 | 0.43 | 28.26 | 0.04 | 1.558 | 166.46 | 10.71 | 46.7 | 40.0 | 13.3 | -7.58 | 2.35 | 0.64 | 0.88 | 1.62 | 1608 | 168 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X5i | 22051 | 2023-09-28 | 2020-05-26 | 4.3 | 4.27 | — | 4.0 | 0.060 | 2.79 | 0.0 | 0.16 | 29.93 | 0.00 | 2.206 | 29.57 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.70 | 0.70 | — | 4.0 | 0.011 | 1.53 | 0.0 | 0.13 | 24.62 | 0.00 | 1.571 | 57.36 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.30 | 0.69 | 0.74 | — | 4480 | 70 | 70 | 0 | 280 | 0 | 0 | logfile |
✔ | 7UUQ | 26800 | 2023-09-27 | 2022-04-28 | 3.1 | 3.45 | 2.98 | 3.3 | 0.014 | 2.95 | 0.0 | 0.06 | 20.39 | 0.01 | 1.865 | 20.35 | 0.00 | 0.0 | 100.0 | 0.0 | -9.31 | 0.68 | 0.85 | 2.95 | 3.3 | 0.118 | 4.71 | 11.0 | 0.23 | 25.10 | 0.02 | 1.642 | 53.03 | 1.10 | 65.5 | 31.5 | 3.0 | -10.63 | 0.67 | 0.73 | 0.90 | 3.96 | 4760 | 364 | 98 | 0 | 98 | 0 | 0 | logfile |
✔ | 6PR5 | 20457 | 2023-09-30 | 2019-07-10 | 3.3 | 3.71 | — | 3.6 | 0.008 | 0.78 | 0.0 | 0.05 | 22.82 | 0.00 | 1.963 | 13.80 | 0.71 | 1.4 | 98.3 | 0.3 | -3.27 | 0.76 | 0.82 | 2.68 | 3.6 | 0.003 | 0.62 | 0.0 | 0.04 | 23.51 | 0.00 | 1.644 | 10.54 | 0.12 | 5.1 | 94.9 | 0.0 | 0.50 | 1.14 | 0.75 | 0.82 | 2.41 | 10194 | 960 | 10 | 124 | 6 | 0 | 0 | logfile |
✔ | 8B3A | 15824 | 2023-09-27 | 2022-09-16 | 3.8 | 3.66 | 2.91 | 4.1 | 0.009 | 1.89 | 0.0 | 0.10 | 27.06 | 0.09 | 2.613 | 1.89 | 0.00 | 0.0 | 100.0 | 0.0 | -4.71 | 0.55 | 0.64 | 5.18 | 4.1 | 0.077 | 6.38 | 29.0 | 0.43 | 20.27 | 0.05 | 1.653 | 309.17 | 6.67 | 46.7 | 8.0 | 45.3 | -10.71 | 2.72 | 0.41 | 0.54 | 3.39 | 2010 | 210 | 30 | 0 | 60 | 0 | 0 | logfile |
✔ | 6VFi | 21173 | 2023-09-29 | 2020-01-05 | 4.54 | 4.63 | 4.96 | 4.5 | 0.018 | 1.47 | 0.0 | 0.09 | 10.93 | 0.01 | 2.449 | 0.53 | 0.00 | 1.3 | 98.7 | 0.0 | 1.21 | 0.80 | 0.78 | — | 4.5 | 0.003 | 0.69 | 0.0 | 0.04 | 13.66 | 0.00 | 1.654 | 28.86 | 0.00 | 2.9 | 97.1 | 0.0 | 1.43 | 2.11 | 0.80 | 0.80 | — | 58488 | 7560 | 48 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PWG | 13681 | 2023-09-28 | 2021-10-06 | 2.75 | 2.35 | — | 2.5 | 0.010 | 1.07 | 0.0 | 0.06 | 16.06 | 0.02 | 1.376 | 3.78 | 6.08 | 4.4 | 95.6 | 0.0 | -2.19 | 0.76 | 0.88 | 4.64 | 2.5 | 0.006 | 0.87 | 0.0 | 0.05 | 16.54 | 0.01 | 1.672 | 4.28 | 3.35 | 3.5 | 96.5 | 0.0 | -0.30 | 0.31 | 0.76 | 0.87 | 3.96 | 109151 | 5769 | 105 | 2722 | 294 | 4397 | 0 | logfile |
✔ | 8HAF | 34587 | 2023-09-29 | 2022-10-26 | 3.25 | 2.28 | 3.09 | 2.2 | 0.003 | 0.82 | 0.0 | 0.07 | 14.58 | 0.00 | 1.671 | 7.15 | 0.40 | 2.8 | 97.2 | 0.0 | 0.83 | 0.70 | 0.74 | 2.25 | 2.1 | 0.003 | 0.79 | 0.0 | 0.07 | 15.75 | 0.00 | 1.678 | 8.89 | 0.60 | 2.8 | 97.2 | 0.0 | 0.55 | 0.53 | 0.77 | 0.80 | 2.95 | 9681 | 1167 | 6 | 0 | 17 | 0 | 0 | logfile |
✔ | 7XD3 | 33134 | 2023-09-29 | 2022-03-26 | 4.05 | 4.16 | — | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 16.04 | 0.00 | 1.960 | 1.21 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.85 | 0.74 | — | 3.9 | 0.007 | 0.80 | 0.0 | 0.04 | 17.33 | 0.01 | 1.680 | 17.06 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.79 | 0.87 | 0.82 | — | 9062 | 0 | 1 | 423 | 28 | 0 | 0 | logfile |
✔ | 7oP1 | 13011 | 2023-09-29 | 2021-05-28 | 3.7 | 3.77 | — | 3.6 | 0.004 | 1.16 | 0.0 | 0.04 | 13.67 | 0.00 | 1.848 | 7.11 | 0.00 | 4.7 | 95.3 | 0.0 | -0.69 | 0.69 | 0.87 | 2.43 | 3.6 | 0.003 | 0.55 | 0.0 | 0.04 | 14.97 | 0.00 | 1.681 | 5.18 | 0.10 | 3.8 | 96.2 | 0.0 | 0.47 | 0.30 | 0.70 | 0.86 | 1.63 | 8744 | 1098 | 1 | 0 | 3 | 0 | 0 | logfile |
✔ | 7N72 | 24217 | 2023-09-28 | 2021-06-09 | 2.5 | 3.08 | 2.57 | 2.9 | 0.007 | 1.35 | 0.0 | 0.06 | 13.10 | 0.01 | 1.971 | 6.06 | 0.00 | 1.4 | 98.6 | 0.0 | -0.87 | 0.72 | 0.85 | 3.04 | 2.9 | 0.004 | 0.86 | 0.0 | 0.04 | 14.42 | 0.00 | 1.683 | 5.79 | 0.40 | 2.4 | 97.6 | 0.0 | 2.13 | 0.44 | 0.67 | 0.83 | 3.01 | 7705 | 1030 | 1 | 0 | 11 | 5 | 0 | logfile |
✔ | 7LQF | 23484 | 2023-09-28 | 2021-02-13 | 3.8 | 3.13 | — | 4.0 | 0.016 | 1.46 | 0.0 | 0.03 | 18.37 | 0.00 | 2.258 | 22.81 | 2.08 | 0.0 | 100.0 | 0.0 | -4.77 | 0.59 | 0.78 | 4.63 | 3.2 | 0.154 | 6.37 | 244.0 | 0.42 | 26.01 | 0.03 | 1.685 | 217.72 | 5.21 | 66.8 | 30.1 | 3.1 | -9.48 | 1.76 | 0.69 | 0.86 | 2.78 | 5376 | 512 | 64 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQ5 | 23481 | 2023-09-28 | 2021-02-13 | 3.4 | 3.53 | 3.25 | 3.5 | 0.013 | 1.31 | 0.0 | 0.07 | 19.67 | 0.01 | 1.857 | 27.57 | 0.45 | 12.9 | 87.1 | 0.0 | -4.95 | 0.75 | 0.77 | 1.16 | 3.5 | 0.005 | 1.01 | 0.0 | 0.05 | 19.22 | 0.01 | 1.711 | 16.76 | 2.26 | 14.1 | 85.9 | 0.0 | -2.69 | 1.04 | 0.76 | 0.81 | 1.26 | 6843 | 774 | 6 | 0 | 24 | 0 | 0 | logfile |
✔ | 7M4U | 23666 | 2023-09-27 | 2021-03-22 | 2.71 | 1.78 | — | 1.6 | 0.006 | 0.58 | 2.0 | 0.04 | 14.94 | 0.02 | 1.771 | 4.42 | 0.20 | 3.1 | 96.7 | 0.2 | 1.08 | 0.79 | 0.76 | 3.70 | 1.6 | 0.005 | 0.77 | 0.0 | 0.04 | 16.06 | 0.01 | 1.721 | 5.89 | 2.25 | 3.6 | 96.2 | 0.2 | 0.58 | 1.73 | 0.82 | 0.81 | 3.44 | 51764 | 2386 | 27 | 1528 | 84 | 191 | 0 | logfile |
✔ | 5LL6 | 4071 | 2023-09-28 | 2016-07-26 | 3.9 | 4.01 | — | 3.9 | 0.012 | 1.50 | 6.0 | 0.11 | 19.04 | 0.01 | 0.924 | 4.96 | 2.53 | 10.6 | 85.7 | 3.7 | -3.86 | 0.69 | 0.82 | 1.20 | 3.9 | 0.009 | 1.02 | 0.0 | 0.05 | 19.15 | 0.01 | 1.728 | 25.33 | 1.83 | 13.9 | 85.1 | 0.9 | -2.96 | 0.90 | 0.70 | 0.81 | 1.06 | 55262 | 3429 | 20 | 1325 | 5 | 0 | 0 | logfile |
✔ | 7LQE | 23483 | 2023-09-28 | 2021-02-13 | 3.4 | 3.06 | — | 3.4 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 2.423 | 23.27 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.57 | 0.80 | 5.06 | 3.2 | 0.151 | 5.20 | 240.0 | 0.38 | 25.46 | 0.02 | 1.745 | 134.94 | 4.40 | 60.8 | 38.2 | 1.0 | -8.67 | 1.67 | 0.65 | 0.89 | 2.25 | 6048 | 576 | 72 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oDS | 12846 | 2023-09-28 | 2021-04-30 | 3.1 | 3.32 | — | 3.1 | 0.002 | 0.40 | 0.0 | 0.03 | 11.26 | 0.02 | 2.009 | 5.03 | 0.51 | 1.2 | 98.8 | 0.0 | 0.91 | 0.78 | 0.76 | 2.42 | 3.1 | 0.006 | 0.79 | 0.0 | 0.04 | 15.02 | 0.01 | 1.752 | 12.55 | 0.40 | 3.7 | 96.3 | 0.0 | 0.15 | 1.70 | 0.80 | 0.80 | 2.23 | 108339 | 9371 | 67 | 1487 | 132 | 0 | 0 | logfile |