Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ZTM	11420	2021-08-09	2020-07-20	3.3	3.40	3.35	3.2	0.014	1.18	0.0	0.07	16.40	0.02	1.048	8.62	6.58	6.3	93.2	0.5	-2.22	0.87	0.83	1.41	3.2	0.006	0.77	0.0	0.04	15.73	0.01	1.088	14.36	0.61	5.6	94.4	0.1	-0.49	1.33	0.88	0.85	1.35	171689	8739	70	4797	424	0	0	logfile
✔	5iQR	8107	2021-08-17	2016-03-11	3.0	3.10	3.03	3.1	0.008	1.25	41.0	0.10	17.19	0.02	0.899	7.46	6.07	7.5	91.0	1.5	-2.52	0.76	0.81	1.93	3.1	0.006	0.78	2.0	0.04	16.75	0.01	1.090	16.43	4.26	5.3	94.4	0.3	-0.87	1.69	0.82	0.87	1.95	154519	6570	74	4794	303	2	0	logfile
✔	6ZLQ	11272	2021-08-10	2020-07-01	3.3	3.41	—	3.3	0.009	0.74	0.0	0.04	17.49	0.00	0.983	15.81	8.48	3.6	96.4	0.0	-3.01	0.81	0.83	1.76	3.3	0.005	0.67	0.0	0.04	18.08	0.00	1.090	15.94	1.13	1.1	98.9	0.0	3.12	0.71	0.81	0.83	1.13	33823	4185	38	0	16	0	0	logfile
✔	6ZTN	11421	2021-08-10	2020-07-20	3.9	3.77	3.87	3.5	0.012	1.16	0.0	0.07	16.39	0.02	0.156	8.31	5.85	6.1	93.1	0.7	-2.23	0.88	0.86	1.01	3.5	0.007	0.80	0.0	0.04	16.15	0.01	1.090	18.44	0.39	5.3	94.7	0.0	-0.44	0.79	0.88	0.86	0.84	174624	8895	80	4872	489	0	0	logfile
✔	5o5J	3748	2021-08-11	2017-06-02	3.45	3.51	—	3.4	0.008	1.20	0.0	0.05	17.48	0.01	1.740	9.41	11.65	5.4	94.5	0.1	-3.62	0.65	0.87	1.42	3.4	0.006	0.78	1.0	0.04	16.70	0.01	1.090	13.22	1.25	5.0	94.8	0.2	0.05	1.57	0.64	0.85	1.44	52163	2406	28	1536	219	0	0	logfile
✔	6VQT	21356	2021-08-07	2020-02-05	3.03	4.54	3.09	4.1	0.009	1.15	0.0	0.06	16.32	0.01	1.733	10.21	4.94	2.7	97.3	0.0	1.39	0.78	0.80	1.43	4.1	0.004	0.74	0.0	0.04	16.65	0.00	1.092	10.42	0.54	2.8	97.2	0.0	2.41	1.09	0.77	0.86	1.18	9144	1168	4	0	6	0	0	logfile
✔	6Q97	4476	2021-08-18	2018-12-17	3.9	3.69	—	20.0	0.011	1.20	0.0	0.16	18.93	0.02	1.320	6.98	0.38	10.1	89.8	0.1	-5.34	0.15	0.01	0.22	3.6	0.006	0.95	1.0	0.05	20.63	0.01	1.093	23.29	0.04	10.2	89.8	0.0	-3.70	2.61	0.31	0.25	0.22	156609	6124	72	5051	441	2	0	logfile
✔	7o4L	12722	2021-08-10	2021-04-06	3.4	3.17	3.35	3.1	0.002	0.45	0.0	0.04	14.06	0.00	2.001	4.03	0.00	2.3	97.7	0.0	2.39	0.69	0.73	2.31	3.1	0.004	0.60	0.0	0.04	16.67	0.00	1.096	8.35	0.28	2.7	97.3	0.0	1.06	1.25	0.74	0.81	1.93	35159	4330	25	20	15	0	0	logfile
✔	6HCF	0192	2021-08-21	2018-08-14	3.9	4.03	3.82	4.0	0.019	1.11	8.0	0.05	16.28	0.01	1.109	5.24	0.37	9.8	90.0	0.2	-5.11	0.76	0.84	1.86	4.0	0.009	0.88	4.0	0.04	17.78	0.01	1.103	15.73	0.23	10.5	89.4	0.1	-3.19	2.25	0.77	0.85	1.47	226754	12928	108	5736	310	4	0	logfile
✔	6B6H	7059	2021-08-10	2017-10-02	3.9	4.15	—	3.7	0.008	0.96	0.0	0.05	15.91	0.01	1.944	6.20	0.03	8.9	91.0	0.2	-4.47	0.71	0.48	1.58	3.8	0.005	0.80	0.0	0.04	17.70	0.00	1.106	14.92	0.17	10.4	89.5	0.0	-1.90	1.59	0.81	0.63	1.32	72070	4188	15	178	6	0	35400	logfile
✔	7A5i	11644	2021-08-08	2020-08-21	3.7	2.91	3.49	3.2	0.012	1.50	10.0	0.07	19.05	0.01	1.201	7.29	0.19	10.1	89.6	0.3	-4.29	0.62	0.75	1.64	3.2	0.008	0.93	3.0	0.04	18.97	0.01	1.107	15.78	0.41	9.7	90.1	0.1	-2.32	0.49	0.62	0.76	1.61	163843	13049	105	2698	220	0	0	logfile
✔	7o4J	12720	2021-08-10	2021-04-06	2.9	2.83	2.83	2.8	0.003	0.50	1.0	0.04	14.76	0.00	1.910	4.27	0.01	2.5	97.5	0.0	0.31	0.75	0.80	3.09	2.8	0.003	0.63	0.0	0.04	17.18	0.00	1.109	8.19	1.44	2.8	97.2	0.0	0.72	0.61	0.80	0.84	2.72	73025	8889	43	90	22	0	0	logfile
✔	5o61	3751	2021-08-17	2017-06-03	3.31	3.39	—	3.3	0.007	0.99	0.0	0.04	17.09	0.01	1.579	7.48	10.91	4.7	95.1	0.2	-3.02	0.83	0.88	2.03	3.3	0.007	0.75	0.0	0.04	16.99	0.01	1.111	12.71	1.21	5.2	94.8	0.1	-0.37	0.68	0.83	0.88	1.59	151463	6088	73	4830	631	0	0	logfile
✔	7NSH	12567	2021-08-09	2021-03-07	3.2	3.39	3.12	3.3	0.003	0.53	0.0	0.05	15.69	0.00	1.187	7.70	0.02	4.2	95.8	0.1	0.71	0.80	0.84	2.70	3.3	0.005	0.65	1.0	0.04	17.03	0.00	1.115	9.41	0.26	4.7	95.3	0.0	0.64	1.23	0.80	0.89	2.63	112448	9643	79	1611	229	2	0	logfile
✔	7A5G	11642	2021-08-09	2020-08-21	4.33	3.50	4.16	3.5	0.008	1.16	2.0	0.06	17.97	0.01	1.222	7.14	0.96	9.4	90.3	0.3	-4.14	0.66	0.74	—	3.5	0.007	0.88	1.0	0.04	17.34	0.01	1.119	19.07	0.06	10.6	89.2	0.1	-2.07	0.74	0.66	0.74	—	170507	13843	114	2722	203	79	0	logfile
✔	6YSU	10908	2021-08-14	2020-04-23	3.7	3.89	3.60	3.7	0.007	0.81	2.0	0.04	16.90	0.02	1.368	20.48	0.17	12.1	87.7	0.2	-4.65	0.83	0.87	1.85	3.7	0.006	0.77	1.0	0.04	16.97	0.01	1.119	19.42	0.83	10.3	89.7	0.1	-2.04	0.43	0.83	0.86	1.59	146399	6030	69	4645	358	0	0	logfile
✔	6ZU1	11426	2021-08-09	2020-07-21	3.0	2.64	3.07	2.9	0.013	1.12	0.0	0.06	16.30	0.02	1.042	6.27	5.10	5.8	93.5	0.7	-2.13	0.81	0.86	2.82	2.9	0.004	0.71	1.0	0.04	15.75	0.01	1.122	10.31	2.92	4.4	95.6	0.1	-0.05	2.17	0.81	0.87	2.34	172846	8886	79	4793	491	0	0	logfile
✔	5MMM	3533	2021-08-17	2016-12-11	3.4	3.54	—	3.4	0.008	1.13	0.0	0.05	16.64	0.01	1.757	8.94	9.93	4.9	94.8	0.3	-3.33	0.90	0.86	1.38	3.4	0.005	0.68	1.0	0.04	16.48	0.01	1.123	14.58	0.45	5.6	94.3	0.1	-0.78	0.80	0.90	0.85	1.18	152465	6586	86	4585	955	0	0	logfile
✔	6FTX	4318	2021-08-09	2018-02-25	4.5	5.25	—	4.4	0.020	2.39	14.0	0.12	26.03	0.04	1.732	67.65	3.23	8.1	90.3	1.6	-2.94	0.82	0.74	—	4.4	0.003	0.71	0.0	0.04	24.25	0.00	1.124	15.17	0.00	3.8	95.9	0.2	-0.33	1.87	0.83	0.76	—	21049	1808	13	319	2	0	0	logfile
✔	6ZTJ	11418	2021-08-10	2020-07-20	3.4	3.44	3.74	3.4	0.012	1.14	0.0	0.07	16.58	0.02	0.298	8.22	6.84	6.6	92.7	0.8	-2.31	0.78	0.76	0.84	3.4	0.005	0.77	1.0	0.04	16.02	0.01	1.131	16.60	0.30	6.0	94.0	0.0	-0.51	1.95	0.80	0.80	0.68	176970	9394	80	4806	483	0	0	logfile

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