Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6FTi	4316	2022-07-11	2018-02-22	4.2	4.31	—	4.2	0.011	1.38	18.0	0.10	19.92	0.01	0.284	12.10	11.77	9.7	87.9	2.4	-4.07	0.61	0.61	—	4.2	0.005	0.87	1.0	0.04	17.97	0.01	1.092	28.41	0.06	9.0	90.4	0.6	-1.89	1.00	0.63	0.66	—	153850	8349	75	4014	399	0	0	logfile
✔	5GAH	8004	2022-07-06	2015-11-26	3.8	3.97	—	3.9	0.008	1.10	0.0	0.05	15.97	0.01	1.737	8.39	11.31	3.3	96.7	0.1	-3.33	0.73	0.85	1.12	3.9	0.006	0.69	0.0	0.04	15.40	0.01	1.093	15.00	1.03	4.4	95.4	0.1	-0.90	1.16	0.74	0.87	1.51	94027	3595	46	3049	473	0	0	logfile
✔	6TUP	10593	2022-07-05	2020-01-08	3.2	3.52	—	3.3	0.011	1.02	0.0	0.05	21.23	0.00	0.032	54.60	0.00	0.0	100.0	0.0	-7.04	0.49	0.47	1.19	3.6	0.039	2.56	0.0	0.24	27.07	0.01	1.098	116.88	1.25	3.2	96.8	0.0	-2.76	8.49	0.55	0.60	-0.09	22400	2300	100	300	0	0	0	logfile
✔	7RPW	24624	2022-07-03	2021-08-04	4.38	4.64	—	4.4	0.003	0.57	0.0	0.04	19.19	0.00	1.756	18.15	9.97	11.3	88.6	0.1	-2.82	0.77	0.68	—	4.4	0.003	0.67	0.0	0.04	18.59	0.00	1.099	14.58	0.00	8.3	91.6	0.1	-3.11	3.75	0.76	0.66	—	10594	1179	10	62	5	0	0	logfile
✔	5oT7	3852	2022-07-11	2017-08-21	3.8	3.85	3.80	3.8	0.003	0.84	0.0	0.04	14.90	0.01	1.298	6.73	0.49	12.5	87.2	0.3	-5.45	0.77	0.70	1.03	3.8	0.007	0.81	0.0	0.04	16.49	0.01	1.101	21.05	0.40	14.2	85.6	0.2	-3.67	1.31	0.83	0.81	1.03	154665	6718	75	4614	805	0	0	logfile
✔	5MMM	3533	2022-07-10	2016-12-11	3.4	3.54	—	3.4	0.008	1.13	0.0	0.05	16.64	0.01	1.757	9.06	9.93	4.9	94.8	0.3	-3.33	0.90	0.86	1.38	3.4	0.006	0.69	2.0	0.04	16.29	0.01	1.109	15.15	0.32	4.6	95.3	0.1	-0.58	0.73	0.89	0.84	1.25	152465	6586	86	4585	955	0	0	logfile
✔	7N0C	24103	2022-07-03	2021-05-25	3.4	3.71	—	3.7	0.009	1.00	0.0	0.05	13.78	0.01	2.180	6.87	0.00	1.3	98.7	0.0	-3.80	0.72	0.80	2.48	3.7	0.003	0.64	0.0	0.04	14.71	0.00	1.109	12.01	0.36	5.5	94.5	0.0	-1.49	0.49	0.71	0.79	1.79	6088	644	6	49	7	1	0	logfile
✔	5XYM	6789	2022-07-05	2017-07-09	3.08	3.42	—	3.4	0.006	1.01	7.0	0.10	16.02	0.00	1.297	4.10	2.56	7.8	89.6	2.5	-3.59	0.66	0.78	3.19	3.4	0.004	0.64	1.0	0.03	15.42	0.01	1.114	8.19	0.12	7.8	91.2	1.1	-1.59	1.41	0.77	0.85	2.41	84069	3122	32	2781	146	0	0	logfile
✔	6B6H	7059	2022-07-04	2017-10-02	3.9	4.15	—	3.7	0.008	0.96	0.0	0.05	15.91	0.01	1.944	6.27	0.03	8.9	91.0	0.2	-4.47	0.71	0.48	1.58	3.8	0.004	0.68	0.0	0.04	17.37	0.00	1.117	14.17	0.28	9.5	90.5	0.0	-1.77	1.53	0.84	0.65	1.45	72070	4188	15	178	6	0	35400	logfile
✔	5Go9	9528	2022-07-07	2016-07-26	4.4	4.59	—	4.4	0.020	1.79	36.0	0.11	12.27	0.01	2.185	7.63	0.88	8.7	90.7	0.6	-4.90	0.78	0.82	—	4.4	0.005	0.98	0.0	0.05	13.26	0.01	1.122	27.40	0.06	8.9	91.0	0.2	-1.32	1.43	0.77	0.78	—	105068	13692	8	0	4	0	0	logfile
✔	6GC4	4380	2022-07-05	2018-04-17	4.3	4.54	—	4.3	0.003	0.77	0.0	0.03	13.73	0.01	2.252	4.16	0.39	6.9	92.9	0.2	-3.77	0.70	0.60	—	4.3	0.008	0.82	0.0	0.04	15.48	0.01	1.125	27.99	0.04	10.7	89.1	0.2	-2.52	0.87	0.80	0.79	—	80165	2836	26	2705	0	0	0	logfile
✔	7QH7	13967	2022-07-05	2021-12-10	2.89	4.42	—	2.2	0.007	0.72	0.0	0.04	15.34	0.00	1.147	6.54	3.11	7.6	92.3	0.1	-1.65	0.66	0.59	2.10	2.3	0.005	0.77	0.0	0.04	15.96	0.00	1.135	18.68	2.51	5.7	94.3	0.0	-0.47	0.71	0.89	0.86	1.73	85397	7017	59	1312	53	14	0	logfile
✔	6TPQ	10543	2022-07-06	2019-12-13	3.07	4.01	—	3.3	0.008	0.68	0.0	0.04	16.20	0.00	1.176	12.62	0.04	9.5	90.5	0.0	-4.14	0.92	0.90	2.30	3.3	0.003	0.68	0.0	0.04	16.41	0.00	1.136	13.14	0.58	7.1	92.9	0.0	-1.76	0.33	0.92	0.91	1.83	91728	3346	39	3047	222	0	0	logfile
✔	6oAA	0666	2022-07-04	2019-03-15	4.1	4.22	4.19	4.2	0.006	1.06	1.0	0.05	16.65	0.01	1.317	13.53	0.34	8.3	91.5	0.3	-5.52	0.63	0.70	—	4.2	0.004	0.86	0.0	0.05	15.56	0.01	1.139	15.00	0.00	9.8	90.1	0.1	-2.16	0.88	0.66	0.76	—	19546	2494	10	0	14	0	0	logfile
✔	6ZoL	11322	2022-07-05	2020-07-07	2.8	3.00	2.78	2.9	0.003	0.55	0.0	0.04	14.47	0.00	1.309	4.19	1.49	3.0	97.0	0.0	0.69	0.75	0.87	3.29	3.0	0.003	0.57	0.0	0.04	16.40	0.00	1.141	5.43	1.97	3.0	97.0	0.0	0.70	2.44	0.76	0.88	2.90	25591	1944	22	472	59	0	0	logfile
✔	7DXK	30912	2022-07-04	2021-01-19	4.1	4.08	—	4.0	0.007	1.05	0.0	0.05	15.55	0.01	2.251	5.96	0.48	5.2	94.6	0.2	-3.75	0.79	0.81	—	4.0	0.006	0.93	0.0	0.04	14.44	0.01	1.146	16.23	0.00	5.4	94.6	0.0	0.68	3.10	0.79	0.80	—	20491	2621	2	0	0	0	0	logfile
✔	7NVL	12605	2022-07-04	2021-03-15	2.5	2.63	2.55	2.6	0.005	0.78	0.0	0.05	16.49	0.00	1.915	8.74	1.56	3.2	96.7	0.0	-2.02	0.60	0.73	3.80	2.6	0.005	0.67	0.0	0.04	17.66	0.00	1.149	8.73	2.13	2.9	97.1	0.0	0.82	1.19	0.75	0.86	3.50	66477	8626	50	0	48	27	0	logfile
✔	3J9S	6272	2022-07-03	2015-02-19	2.6	3.83	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.216	25.26	6.86	1.3	98.0	0.8	1.97	0.68	0.76	3.15	3.5	0.003	0.64	0.0	0.04	17.34	0.00	1.152	8.77	1.52	1.9	98.1	0.0	1.29	1.91	0.70	0.89	3.42	9813	1191	3	0	15	315	0	logfile
✔	7QGU	13959	2022-07-06	2021-12-10	4.75	7.20	—	5.6	0.010	1.50	1.0	0.04	15.78	0.02	1.064	11.48	0.26	6.6	91.0	2.3	-1.82	0.70	0.57	—	5.5	0.008	1.03	0.0	0.05	20.56	0.01	1.157	71.76	0.04	11.2	88.1	0.7	-1.79	2.91	0.82	0.84	—	135606	5791	54	4656	0	0	0	logfile
✔	7SN7	25213	2022-07-05	2021-10-27	4.2	4.22	—	4.1	0.003	0.63	0.0	0.04	13.41	0.00	2.099	13.03	0.07	8.3	91.7	0.0	0.65	0.47	0.76	—	4.1	0.006	0.76	1.0	0.04	13.96	0.00	1.170	20.13	0.03	9.9	90.1	0.0	0.04	0.64	0.50	0.79	—	90482	12558	23	0	0	0	0	logfile

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