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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6KS7 | 0759 | 2022-05-13 | 2019-08-23 | 4.62 | 4.57 | — | 4.5 | 0.001 | 0.39 | 0.0 | 0.04 | 7.11 | 0.00 | 2.241 | 5.80 | 0.00 | 4.3 | 95.7 | 0.0 | -3.50 | 0.70 | 0.62 | — | 4.5 | 0.009 | 0.91 | 0.0 | 0.05 | 12.10 | 0.00 | 1.014 | 21.96 | 0.03 | 3.5 | 96.4 | 0.1 | -0.25 | 1.82 | 0.74 | 0.68 | — | 62022 | 8131 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TZ1 | 20586 | 2022-05-13 | 2019-08-09 | 3.4 | 3.44 | — | 3.4 | 0.008 | 0.95 | 0.0 | 0.05 | 10.10 | 0.01 | 2.207 | 4.42 | 0.47 | 5.1 | 94.9 | 0.0 | -3.92 | 0.54 | 0.85 | 3.95 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 14.45 | 0.00 | 1.020 | 6.77 | 0.47 | 3.9 | 96.1 | 0.0 | -0.26 | 1.63 | 0.54 | 0.87 | 3.14 | 14212 | 1709 | 5 | 23 | 1 | 0 | 0 | logfile |
✔ | 7MT3 | 23975 | 2022-05-20 | 2021-05-12 | 2.8 | 2.45 | — | 2.9 | 0.007 | 0.79 | 0.0 | 0.04 | 13.62 | 0.01 | 1.298 | 2.44 | 0.13 | 7.0 | 92.9 | 0.1 | -4.52 | 0.84 | 0.86 | 4.06 | 2.9 | 0.009 | 0.72 | 0.0 | 0.04 | 14.29 | 0.01 | 1.026 | 6.28 | 2.16 | 7.0 | 92.9 | 0.1 | -1.23 | 2.16 | 0.85 | 0.88 | 3.20 | 147942 | 5616 | 68 | 4835 | 441 | 0 | 0 | logfile |
✔ | 7NWW | 12636 | 2022-05-19 | 2021-03-17 | 3.05 | 3.83 | 3.02 | 2.9 | 0.010 | 0.97 | 0.0 | 0.06 | 14.33 | 0.02 | 1.667 | 7.42 | 0.49 | 3.6 | 96.3 | 0.2 | -3.85 | 0.89 | 0.86 | 3.17 | 3.0 | 0.005 | 0.72 | 0.0 | 0.04 | 15.06 | 0.01 | 1.031 | 14.45 | 0.66 | 3.9 | 96.1 | 0.0 | -0.21 | 2.45 | 0.92 | 0.91 | 2.56 | 145149 | 5738 | 67 | 4651 | 415 | 0 | 0 | logfile |
✔ | 5o61 | 3751 | 2022-05-23 | 2017-06-03 | 3.31 | 3.39 | — | 3.3 | 0.007 | 0.99 | 0.0 | 0.04 | 17.09 | 0.01 | 1.579 | 7.53 | 10.91 | 4.7 | 95.1 | 0.2 | -3.02 | 0.83 | 0.88 | 2.03 | 3.3 | 0.005 | 0.65 | 1.0 | 0.04 | 16.82 | 0.01 | 1.034 | 11.64 | 0.85 | 4.8 | 95.1 | 0.0 | -0.29 | 0.64 | 0.82 | 0.87 | 1.59 | 151463 | 6088 | 73 | 4830 | 631 | 0 | 0 | logfile |
✔ | 5T62 | 8362 | 2022-05-16 | 2016-09-01 | 3.3 | 3.38 | — | 3.4 | 0.007 | 1.13 | 5.0 | 0.09 | 17.39 | 0.01 | 1.390 | 1.92 | 6.32 | 8.1 | 89.7 | 2.2 | -4.03 | 0.68 | 0.78 | 3.21 | 3.3 | 0.004 | 0.71 | 0.0 | 0.04 | 16.50 | 0.00 | 1.034 | 5.77 | 0.02 | 6.7 | 92.7 | 0.7 | -1.65 | 0.65 | 0.79 | 0.86 | 2.51 | 131766 | 7061 | 57 | 3483 | 438 | 6 | 0 | logfile |
✔ | 3LoS | 5137 | 2022-05-13 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 88.10 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.007 | 1.33 | 0.0 | 0.05 | 16.09 | 0.01 | 1.037 | 31.44 | 0.00 | 20.2 | 75.6 | 4.2 | -4.47 | 1.32 | 0.62 | 0.54 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oAB | 20000 | 2022-05-14 | 2019-03-15 | 3.6 | 3.87 | 3.73 | 3.8 | 0.006 | 1.07 | 1.0 | 0.05 | 16.24 | 0.01 | 1.245 | 9.41 | 0.34 | 7.7 | 92.1 | 0.2 | -5.58 | 0.68 | 0.68 | 0.81 | 3.7 | 0.003 | 0.83 | 0.0 | 0.04 | 17.36 | 0.00 | 1.040 | 12.89 | 0.19 | 7.1 | 92.8 | 0.1 | -1.64 | 0.95 | 0.73 | 0.79 | 1.04 | 19690 | 2537 | 11 | 0 | 18 | 0 | 0 | logfile |
✔ | 7AC7 | 11713 | 2022-05-24 | 2020-09-10 | 3.08 | 3.25 | 3.06 | 3.1 | 0.003 | 0.58 | 5.0 | 0.03 | 14.38 | 0.02 | 1.183 | 10.10 | 0.66 | 3.1 | 96.7 | 0.2 | -0.42 | 0.80 | 0.83 | 2.85 | 3.1 | 0.004 | 0.62 | 0.0 | 0.03 | 15.67 | 0.01 | 1.041 | 8.63 | 0.51 | 3.8 | 96.1 | 0.1 | -0.05 | 0.58 | 0.84 | 0.89 | 2.58 | 154883 | 5975 | 71 | 5017 | 443 | 0 | 0 | logfile |
✔ | 6YSU | 10908 | 2022-05-19 | 2020-04-23 | 3.7 | 3.89 | 3.60 | 3.7 | 0.007 | 0.81 | 2.0 | 0.04 | 16.90 | 0.02 | 1.368 | 20.66 | 0.17 | 12.1 | 87.7 | 0.2 | -4.65 | 0.83 | 0.87 | 1.85 | 3.7 | 0.005 | 0.73 | 1.0 | 0.04 | 16.99 | 0.01 | 1.046 | 18.37 | 0.83 | 9.4 | 90.5 | 0.1 | -1.97 | 0.41 | 0.83 | 0.86 | 1.57 | 146399 | 6030 | 69 | 4645 | 358 | 0 | 0 | logfile |
✔ | 5ooL | 3842 | 2022-05-17 | 2017-08-08 | 3.06 | 5.10 | 3.10 | 4.9 | 0.009 | 1.05 | 2.0 | 0.06 | 14.15 | 0.01 | 0.037 | 6.41 | 0.54 | 5.0 | 94.9 | 0.1 | -3.52 | 0.77 | 0.61 | 0.86 | 4.9 | 0.005 | 0.92 | 0.0 | 0.05 | 17.50 | 0.01 | 1.048 | 29.65 | 1.29 | 6.3 | 93.6 | 0.0 | -1.21 | 1.56 | 0.87 | 0.86 | 0.91 | 98998 | 8198 | 66 | 1497 | 124 | 0 | 0 | logfile |
✔ | 5MPD | 3534 | 2022-05-17 | 2016-12-16 | 4.1 | 4.14 | — | 4.1 | 0.035 | 3.40 | 330.0 | 0.20 | 17.76 | 0.03 | 0.656 | 3.85 | 2.78 | 5.6 | 92.3 | 2.1 | -2.14 | 0.21 | 0.37 | — | 4.1 | 0.010 | 1.18 | 2.0 | 0.05 | 15.58 | 0.01 | 1.051 | 28.38 | 0.00 | 7.6 | 92.2 | 0.3 | -1.78 | 1.92 | 0.28 | 0.63 | — | 40974 | 5142 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Q9A | 4478 | 2022-05-24 | 2018-12-17 | 3.7 | 3.75 | — | 3.7 | 0.009 | 1.13 | 0.0 | 0.17 | 17.46 | 0.02 | 1.280 | 5.74 | 0.79 | 9.1 | 90.9 | 0.1 | -4.18 | 0.84 | 0.83 | 1.58 | 3.7 | 0.008 | 0.82 | 1.0 | 0.04 | 17.06 | 0.01 | 1.056 | 14.42 | 0.95 | 8.8 | 91.2 | 0.1 | -1.71 | 2.34 | 0.84 | 0.82 | 1.34 | 155169 | 6092 | 70 | 4996 | 439 | 2 | 0 | logfile |
✔ | 6LQM | 0948 | 2022-05-17 | 2020-01-14 | 3.09 | 3.18 | — | 3.1 | 0.016 | 1.30 | 3.0 | 0.07 | 17.19 | 0.03 | 1.296 | 4.36 | 1.60 | 7.4 | 92.4 | 0.2 | -3.93 | 0.83 | 0.85 | 3.33 | 3.1 | 0.010 | 0.97 | 0.0 | 0.05 | 17.38 | 0.01 | 1.065 | 8.95 | 0.68 | 7.8 | 92.1 | 0.1 | -1.70 | 0.36 | 0.85 | 0.88 | 3.05 | 139464 | 7108 | 53 | 3808 | 251 | 0 | 0 | logfile |
✔ | 5ANB | 3146 | 2022-05-18 | 2015-09-06 | 4.1 | 4.11 | — | 4.1 | 0.008 | 1.31 | 6.0 | 0.10 | 18.54 | 0.01 | 1.245 | 5.13 | 4.33 | 13.0 | 83.9 | 3.1 | -4.17 | 0.41 | 0.75 | — | 4.1 | 0.007 | 0.93 | 0.0 | 0.04 | 17.15 | 0.01 | 1.065 | 22.25 | 0.00 | 13.2 | 86.1 | 0.8 | -3.51 | 0.83 | 0.39 | 0.71 | — | 48493 | 3025 | 12 | 1162 | 0 | 0 | 0 | logfile |
✔ | 7S6C | 24868 | 2022-05-13 | 2021-09-13 | 3.1 | 3.69 | — | 3.3 | 0.005 | 0.74 | 0.0 | 0.04 | 13.96 | 0.00 | 2.068 | 4.32 | 0.00 | 4.0 | 96.0 | 0.0 | -0.30 | 0.82 | 0.76 | 2.85 | 3.3 | 0.004 | 0.52 | 0.0 | 0.04 | 14.78 | 0.00 | 1.066 | 9.20 | 0.16 | 4.7 | 95.3 | 0.0 | 0.00 | 0.33 | 0.84 | 0.80 | 2.90 | 47369 | 3190 | 10 | 0 | 2 | 0 | 23420 | logfile |
✔ | 5UYQ | 8620 | 2022-05-24 | 2017-02-24 | 3.8 | 4.28 | 4.16 | 3.7 | 0.007 | 1.05 | 0.0 | 0.09 | 14.22 | 0.01 | 1.314 | 14.39 | 1.29 | 13.9 | 83.4 | 2.7 | -5.24 | 0.86 | 0.79 | 0.45 | 3.5 | 0.006 | 0.83 | 0.0 | 0.04 | 17.23 | 0.01 | 1.067 | 34.38 | 0.95 | 15.2 | 84.5 | 0.2 | -3.26 | 1.11 | 0.87 | 0.82 | 0.35 | 153759 | 6476 | 63 | 4810 | 2 | 0 | 0 | logfile |
✔ | 6ZoJ | 11320 | 2022-05-15 | 2020-07-07 | 2.8 | 3.07 | — | 3.0 | 0.002 | 0.51 | 0.0 | 0.03 | 14.31 | 0.00 | 1.694 | 4.49 | 1.39 | 2.3 | 97.7 | 0.0 | 0.76 | 0.80 | 0.85 | 3.50 | 2.9 | 0.007 | 0.69 | 0.0 | 0.04 | 16.02 | 0.01 | 1.068 | 5.53 | 2.64 | 3.5 | 96.5 | 0.0 | 0.48 | 2.45 | 0.81 | 0.87 | 3.31 | 75783 | 4914 | 45 | 1704 | 169 | 0 | 0 | logfile |
✔ | 6Q95 | 4475 | 2022-05-24 | 2018-12-17 | 3.7 | 3.72 | — | 3.7 | 0.012 | 1.38 | 0.0 | 0.06 | 19.08 | 0.01 | 1.247 | 8.95 | 1.13 | 16.6 | 82.6 | 0.8 | -5.45 | 0.81 | 0.82 | 1.61 | 3.7 | 0.006 | 0.93 | 1.0 | 0.04 | 18.99 | 0.01 | 1.072 | 22.43 | 0.27 | 14.0 | 85.5 | 0.5 | -3.37 | 1.95 | 0.80 | 0.81 | 1.31 | 154751 | 5924 | 84 | 4932 | 910 | 0 | 0 | logfile |
✔ | 7o5H | 12736 | 2022-05-16 | 2021-04-08 | 3.1 | 2.93 | 3.04 | 2.8 | 0.002 | 0.33 | 0.0 | 0.03 | 12.30 | 0.00 | 1.262 | 5.95 | 0.98 | 2.1 | 97.9 | 0.0 | 1.09 | 0.86 | 0.83 | 1.84 | 2.8 | 0.006 | 0.67 | 0.0 | 0.04 | 14.61 | 0.01 | 1.074 | 13.60 | 0.42 | 3.8 | 96.2 | 0.0 | 0.27 | 1.48 | 0.87 | 0.85 | 1.30 | 34436 | 1730 | 22 | 964 | 167 | 0 | 0 | logfile |