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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7XHA | 33192 | 2023-04-21 | 2022-04-07 | 3.35 | 3.57 | 3.29 | 3.5 | 0.008 | 1.06 | 4.0 | 0.07 | 11.41 | 0.01 | 1.860 | 7.27 | 0.28 | 4.7 | 95.2 | 0.1 | -3.53 | 0.69 | 0.78 | 2.40 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 15.15 | 0.00 | 1.117 | 8.85 | 0.19 | 3.7 | 96.3 | 0.0 | 0.52 | 1.24 | 0.72 | 0.82 | 2.12 | 10102 | 1270 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 6PEK | 20327 | 2023-04-22 | 2019-06-20 | 4.2 | 4.25 | — | 4.2 | 0.005 | 0.73 | 0.0 | 0.03 | 13.79 | 0.00 | 1.913 | 4.42 | 0.00 | 0.8 | 99.2 | 0.0 | -2.47 | 0.70 | 0.74 | — | 4.2 | 0.003 | 0.74 | 0.0 | 0.04 | 14.87 | 0.00 | 1.129 | 14.37 | 0.00 | 3.0 | 97.0 | 0.0 | -0.34 | 0.99 | 0.71 | 0.77 | — | 11106 | 1405 | 11 | 0 | 13 | 0 | 0 | logfile |
✔ | 6B6H | 7059 | 2023-04-27 | 2017-10-02 | 3.9 | 4.15 | — | 3.7 | 0.008 | 0.96 | 0.0 | 0.05 | 15.91 | 0.01 | 1.944 | 6.23 | 0.03 | 8.9 | 91.0 | 0.2 | -4.47 | 0.71 | 0.48 | 1.58 | 3.8 | 0.004 | 0.67 | 0.0 | 0.04 | 17.34 | 0.00 | 1.132 | 13.86 | 0.28 | 8.5 | 91.4 | 0.0 | -1.79 | 1.53 | 0.84 | 0.64 | 1.47 | 72070 | 4188 | 15 | 178 | 6 | 0 | 35400 | logfile |
✔ | 6oAA | 0666 | 2023-04-25 | 2019-03-15 | 4.1 | 4.22 | 4.19 | 4.2 | 0.006 | 1.06 | 1.0 | 0.05 | 16.65 | 0.01 | 1.317 | 13.46 | 0.34 | 8.3 | 91.5 | 0.3 | -5.52 | 0.63 | 0.70 | — | 4.2 | 0.003 | 0.85 | 0.0 | 0.05 | 15.49 | 0.00 | 1.132 | 14.72 | 0.00 | 9.4 | 90.4 | 0.1 | -2.19 | 0.88 | 0.66 | 0.75 | — | 19546 | 2494 | 10 | 0 | 14 | 0 | 0 | logfile |
✔ | 6ZoL | 11322 | 2023-04-27 | 2020-07-07 | 2.8 | 3.00 | 2.78 | 2.9 | 0.003 | 0.55 | 0.0 | 0.04 | 14.47 | 0.00 | 1.309 | 4.02 | 1.49 | 3.0 | 97.0 | 0.0 | 0.69 | 0.75 | 0.87 | 3.29 | 3.0 | 0.003 | 0.57 | 0.0 | 0.04 | 16.43 | 0.00 | 1.136 | 5.15 | 2.57 | 3.1 | 96.9 | 0.0 | 0.64 | 3.08 | 0.76 | 0.88 | 2.77 | 25591 | 1944 | 22 | 472 | 59 | 0 | 0 | logfile |
✔ | 7JMF | 22392 | 2023-04-24 | 2020-07-31 | 4.5 | 5.06 | — | 4.7 | 0.005 | 0.98 | 0.0 | 0.05 | 10.23 | 0.01 | 1.373 | 8.08 | 0.36 | 11.2 | 88.6 | 0.2 | -4.91 | 0.54 | 0.27 | — | 7.7 | 0.004 | 0.94 | 0.0 | 0.05 | 11.59 | 0.01 | 1.145 | 21.14 | 0.00 | 11.3 | 88.5 | 0.2 | -3.66 | 1.53 | 0.76 | 0.56 | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 3J9S | 6272 | 2023-04-21 | 2015-02-19 | 2.6 | 3.83 | — | 3.5 | 0.020 | 1.80 | 0.0 | 0.12 | 18.55 | 0.01 | 0.216 | 25.10 | 6.86 | 1.3 | 98.0 | 0.8 | 1.97 | 0.68 | 0.76 | 3.15 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 17.43 | 0.00 | 1.145 | 9.20 | 1.43 | 1.5 | 98.5 | 0.0 | 1.37 | 1.90 | 0.70 | 0.89 | 3.19 | 9813 | 1191 | 3 | 0 | 15 | 315 | 0 | logfile |
✔ | 7Y04 | 33537 | 2023-04-22 | 2022-06-03 | 3.5 | 4.03 | — | 4.0 | 0.004 | 0.76 | 0.0 | 0.04 | 15.69 | 0.00 | 2.217 | 6.36 | 0.75 | 4.7 | 95.3 | 0.0 | -2.60 | 0.57 | 0.66 | 2.70 | 4.0 | 0.003 | 0.62 | 0.0 | 0.04 | 16.45 | 0.00 | 1.145 | 6.40 | 0.52 | 4.0 | 96.0 | 0.0 | -1.50 | 1.57 | 0.63 | 0.73 | 2.32 | 12050 | 1475 | 7 | 0 | 4 | 0 | 0 | logfile |
✔ | 6ZMW | 11302 | 2023-04-23 | 2020-07-04 | 3.7 | 3.79 | 3.57 | 3.7 | 0.008 | 1.25 | 0.0 | 0.06 | 16.23 | 0.02 | 1.291 | 7.20 | 2.46 | 6.4 | 93.3 | 0.2 | -2.63 | 0.70 | 0.65 | 1.27 | 3.7 | 0.003 | 0.78 | 0.0 | 0.04 | 17.05 | 0.01 | 1.153 | 15.83 | 0.38 | 5.6 | 94.3 | 0.0 | -1.44 | 1.38 | 0.74 | 0.74 | 1.40 | 118155 | 11116 | 62 | 1822 | 91 | 0 | 0 | logfile |
✔ | 8GYW | 34378 | 2023-04-20 | 2022-09-24 | 3.9 | 3.93 | 3.77 | 4.0 | 0.008 | 1.46 | 0.0 | 0.08 | 15.18 | 0.02 | 2.008 | 6.48 | 0.30 | 0.8 | 99.2 | 0.0 | 1.24 | 0.46 | 0.73 | 1.92 | 3.9 | 0.003 | 0.67 | 0.0 | 0.04 | 16.46 | 0.00 | 1.170 | 13.03 | 1.21 | 1.7 | 98.3 | 0.0 | 2.64 | 1.27 | 0.50 | 0.76 | 0.83 | 6076 | 760 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 7K0T | 22616 | 2023-04-22 | 2020-09-05 | 4.3 | 4.52 | 4.29 | 4.2 | 0.003 | 0.65 | 1.0 | 0.04 | 13.80 | 0.00 | 1.909 | 7.65 | 0.63 | 7.5 | 92.4 | 0.2 | -0.19 | 0.84 | 0.76 | — | 4.2 | 0.036 | 2.69 | 59.0 | 0.11 | 15.80 | 0.02 | 1.195 | 109.81 | 0.00 | 43.4 | 55.0 | 1.6 | -7.43 | 1.92 | 0.86 | 0.83 | — | 115905 | 12820 | 8 | 0 | 3608 | 0 | 0 | logfile |
✔ | 7KSo | 23021 | 2023-04-22 | 2020-11-23 | 3.9 | 4.08 | — | 4.0 | 0.004 | 0.73 | 1.0 | 0.05 | 11.73 | 0.00 | 2.151 | 3.83 | 0.29 | 4.7 | 95.3 | 0.0 | -3.99 | 0.68 | 0.74 | 1.12 | 4.0 | 0.005 | 0.76 | 0.0 | 0.05 | 15.43 | 0.00 | 1.198 | 14.39 | 0.59 | 6.5 | 93.5 | 0.0 | -1.66 | 1.53 | 0.73 | 0.82 | 1.59 | 13075 | 1690 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7R43 | 14261 | 2023-04-25 | 2022-02-08 | 2.4 | 2.41 | — | 2.5 | 0.007 | 0.79 | 0.0 | 0.84 | 15.03 | 0.00 | 1.899 | 3.40 | 0.01 | 2.5 | 97.4 | 0.0 | 0.39 | 0.69 | 0.89 | 5.73 | 2.4 | 0.007 | 1.30 | 0.0 | 0.25 | 16.38 | 0.00 | 1.204 | 4.60 | 0.56 | 1.6 | 98.4 | 0.0 | 1.60 | 0.31 | 0.69 | 0.90 | 4.85 | 68334 | 8188 | 109 | 0 | 47 | 885 | 0 | logfile |
✔ | 7KTP | 23025 | 2023-04-22 | 2020-11-24 | 4.8 | 4.79 | — | 4.6 | 0.005 | 0.73 | 0.0 | 0.05 | 11.99 | 0.00 | 2.221 | 2.15 | 0.00 | 4.5 | 95.5 | 0.0 | -4.13 | 0.71 | 0.69 | — | 4.6 | 0.003 | 0.67 | 0.0 | 0.04 | 12.92 | 0.00 | 1.209 | 15.22 | 0.00 | 5.3 | 94.7 | 0.0 | -0.82 | 2.61 | 0.75 | 0.77 | — | 12008 | 1544 | 5 | 0 | 7 | 0 | 0 | logfile |
✔ | 7oH5 | 12894 | 2023-04-22 | 2021-05-09 | 2.9 | 3.43 | 2.96 | 3.3 | 0.006 | 1.14 | 0.0 | 0.04 | 10.55 | 0.00 | 1.656 | 5.05 | 1.19 | 4.6 | 95.4 | 0.0 | -4.15 | 0.65 | 0.75 | 3.22 | 3.4 | 0.003 | 0.83 | 0.0 | 0.04 | 14.74 | 0.00 | 1.236 | 7.59 | 1.75 | 4.0 | 95.9 | 0.1 | -0.60 | 2.18 | 0.68 | 0.78 | 2.52 | 11603 | 1419 | 8 | 0 | 14 | 2 | 0 | logfile |
✔ | 5VZL | 8749 | 2023-04-23 | 2017-05-29 | 3.9 | 4.38 | — | 19.0 | 0.006 | 0.96 | 0.0 | 0.05 | 14.28 | 0.01 | 2.216 | 7.72 | 0.25 | 8.4 | 91.6 | 0.0 | -4.13 | 0.31 | 0.03 | -0.03 | 17.0 | 0.002 | 0.64 | 0.0 | 0.04 | 15.49 | 0.00 | 1.241 | 12.10 | 0.08 | 5.0 | 95.0 | 0.0 | -1.15 | 1.21 | 0.38 | 0.18 | 0.61 | 13915 | 1451 | 3 | 115 | 1 | 0 | 0 | logfile |
✔ | 7WSQ | 32764 | 2023-04-24 | 2022-02-01 | 3.8 | 3.52 | — | 3.9 | 0.038 | 1.52 | 0.0 | 0.45 | 14.52 | 0.01 | 1.827 | 11.77 | 0.00 | 4.9 | 95.1 | 0.0 | -0.66 | 0.68 | 0.75 | 1.94 | 3.8 | 0.004 | 1.12 | 0.0 | 0.06 | 16.17 | 0.00 | 1.249 | 15.32 | 0.76 | 5.6 | 94.4 | 0.0 | -0.58 | 1.29 | 0.69 | 0.77 | 1.78 | 16522 | 2104 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 7X7N | 33042 | 2023-04-27 | 2022-03-10 | 4.47 | 4.03 | 4.49 | 4.2 | 0.013 | 1.05 | 0.0 | 0.06 | 14.55 | 0.01 | 1.956 | 29.11 | 0.52 | 19.6 | 80.3 | 0.1 | -5.63 | 0.73 | 0.77 | — | 4.1 | 0.003 | 0.75 | 0.0 | 0.05 | 14.04 | 0.00 | 1.251 | 13.68 | 0.00 | 8.8 | 91.2 | 0.0 | -2.53 | 0.76 | 0.72 | 0.76 | — | 26493 | 3314 | 12 | 0 | 45 | 0 | 0 | logfile |
✔ | 6K32 | 9907 | 2023-04-22 | 2019-05-16 | 3.2 | 3.73 | — | 3.8 | 0.009 | 1.22 | 1.0 | 0.07 | 11.49 | 0.01 | 1.345 | 10.22 | 1.25 | 6.3 | 93.3 | 0.3 | -4.88 | 0.28 | 0.72 | 1.49 | 3.7 | 0.004 | 0.78 | 0.0 | 0.05 | 16.38 | 0.00 | 1.254 | 13.10 | 0.77 | 5.7 | 94.2 | 0.0 | -1.38 | 1.36 | 0.31 | 0.82 | 2.33 | 61364 | 7723 | 10 | 8 | 6 | 0 | 0 | logfile |
✔ | 8E5P | 27917 | 2023-04-25 | 2022-08-22 | 4.4 | 9.89 | 6.01 | 8.2 | 0.003 | 0.64 | 0.0 | 0.04 | 11.32 | 0.00 | 1.299 | 26.66 | 1.63 | 1.3 | 98.4 | 0.3 | -0.83 | 0.61 | 0.33 | — | 8.2 | 0.003 | 0.69 | 0.0 | 0.04 | 11.81 | 0.00 | 1.266 | 18.73 | 0.00 | 2.8 | 97.2 | 0.0 | 0.85 | 1.53 | 0.85 | 0.77 | — | 20038 | 2502 | 13 | 8 | 18 | 0 | 0 | logfile |