Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N0C	24103	2022-12-11	2021-05-25	3.4	3.71	—	3.7	0.009	1.00	0.0	0.05	13.78	0.01	2.180	6.87	0.00	1.3	98.7	0.0	-3.80	0.72	0.80	2.48	3.7	0.003	0.58	0.0	0.04	14.71	0.00	1.114	10.27	0.54	5.2	94.8	0.0	-1.38	1.16	0.72	0.82	2.09	6088	644	6	49	7	1	0	logfile
✔	6TPQ	10543	2022-12-16	2019-12-13	3.07	4.01	—	3.3	0.008	0.68	0.0	0.04	16.20	0.00	1.176	12.62	0.04	9.5	90.5	0.0	-4.14	0.92	0.90	2.30	3.3	0.005	0.66	0.0	0.04	16.34	0.00	1.114	12.33	1.01	7.7	92.3	0.0	-1.74	0.34	0.92	0.91	1.80	91728	3346	39	3047	222	0	0	logfile
✔	4V19	2787	2022-12-14	2014-09-25	3.4	3.44	—	3.4	0.009	1.23	0.0	0.05	20.02	0.01	1.860	9.79	6.97	3.8	96.1	0.1	-2.85	0.76	0.88	2.04	3.4	0.004	0.67	0.0	0.04	19.00	0.01	1.117	8.81	0.45	3.9	96.1	0.1	-0.23	2.80	0.76	0.88	2.11	69409	4361	42	1583	171	204	0	logfile
✔	6KPJ	0748	2022-12-12	2019-08-15	2.56	3.82	—	3.3	0.014	0.94	0.0	0.06	12.22	0.00	1.218	8.38	0.00	6.7	93.3	0.0	-4.33	0.85	0.86	3.83	3.3	0.004	0.72	1.0	0.13	14.26	0.00	1.119	6.67	0.41	2.8	97.2	0.0	1.00	0.70	0.85	0.87	3.59	62845	3936	24	0	48	0	31225	logfile
✔	6oAA	0666	2022-12-14	2019-03-15	4.1	4.22	4.19	4.2	0.006	1.06	1.0	0.05	16.65	0.01	1.317	13.56	0.34	8.3	91.5	0.3	-5.52	0.63	0.70	—	4.2	0.003	0.86	0.0	0.05	15.60	0.00	1.126	15.26	0.00	10.2	89.7	0.1	-2.39	0.90	0.67	0.76	—	19546	2494	10	0	14	0	0	logfile
✔	6i9R	4434	2022-12-19	2018-11-25	3.9	4.02	3.89	4.0	0.005	0.62	0.0	0.05	13.42	0.01	1.512	3.67	0.01	3.8	96.1	0.0	-3.40	0.79	0.81	1.34	3.9	0.003	0.73	0.0	0.04	16.36	0.01	1.126	15.85	0.76	4.6	95.4	0.0	-0.43	1.75	0.82	0.86	1.50	100274	8198	62	1562	139	0	0	logfile
✔	5GAH	8004	2022-12-17	2015-11-26	3.8	3.97	—	3.9	0.008	1.10	0.0	0.05	15.97	0.01	1.737	8.39	11.31	3.3	96.7	0.1	-3.33	0.73	0.85	1.12	3.9	0.004	0.61	0.0	0.03	15.18	0.00	1.128	13.43	0.65	3.7	96.2	0.1	-0.58	1.17	0.73	0.87	1.36	94027	3595	46	3049	473	0	0	logfile
✔	6ZoL	11322	2022-12-15	2020-07-07	2.8	3.00	2.78	2.9	0.003	0.55	0.0	0.04	14.47	0.00	1.309	4.19	1.49	3.0	97.0	0.0	0.69	0.75	0.87	3.29	2.9	0.003	0.56	0.0	0.04	16.40	0.00	1.131	5.41	1.97	3.4	96.6	0.0	0.80	2.44	0.77	0.89	2.86	25591	1944	22	472	59	0	0	logfile
✔	7EN1	31199	2022-12-20	2021-04-15	3.47	3.85	3.42	3.6	0.013	1.97	7.0	0.10	15.10	0.02	1.796	1.13	1.72	5.2	94.6	0.3	-2.33	0.86	0.77	2.39	3.6	0.004	0.65	0.0	0.04	15.14	0.00	1.144	13.61	0.05	5.2	94.8	0.0	-0.10	0.80	0.86	0.79	2.08	40862	2656	4	0	8	0	20419	logfile
✔	6B6H	7059	2022-12-14	2017-10-02	3.9	4.15	—	3.7	0.008	0.96	0.0	0.05	15.91	0.01	1.944	6.27	0.03	8.9	91.0	0.2	-4.47	0.71	0.48	1.58	3.8	0.004	0.65	0.0	0.04	17.24	0.00	1.146	12.75	0.14	9.1	90.9	0.0	-1.49	1.52	0.84	0.65	1.31	72070	4188	15	178	6	0	35400	logfile
✔	7LXT	23574	2022-12-22	2021-03-05	3.4	3.70	3.40	3.7	0.009	0.85	0.0	0.05	14.67	0.00	1.972	18.16	0.79	10.7	89.3	0.0	-2.90	0.75	0.82	2.36	3.7	0.004	0.64	0.0	0.04	16.41	0.00	1.153	13.20	0.41	7.2	92.8	0.0	-1.48	0.42	0.76	0.84	1.61	50536	6318	34	0	6	0	0	logfile
✔	6ZJL	11235	2022-12-19	2020-06-29	4.3	4.31	—	4.3	0.021	2.33	37.0	1.41	15.36	0.02	2.162	2.90	2.43	9.6	87.6	2.9	-4.76	0.55	0.77	—	4.3	0.012	2.29	0.0	0.44	14.31	0.00	1.162	17.06	0.03	5.2	94.6	0.3	-0.50	2.05	0.56	0.79	—	36057	4646	20	0	10	0	0	logfile
✔	7BoH	12243	2022-12-22	2021-01-25	2.82	3.09	2.90	2.8	0.006	0.62	4.0	0.04	13.89	0.02	0.657	6.33	0.00	3.3	96.7	0.0	-1.47	0.82	0.80	2.52	2.8	0.004	0.66	0.0	0.03	14.91	0.01	1.164	12.55	2.38	3.8	96.2	0.0	0.09	0.60	0.87	0.90	2.21	52154	2445	25	1527	157	0	0	logfile
✔	7TR9	26083	2022-12-18	2022-01-28	3.9	4.30	—	4.1	0.003	0.68	2.0	0.05	13.00	0.00	1.387	16.29	0.17	8.7	90.9	0.4	-2.44	0.80	0.72	0.00	4.0	0.003	0.79	0.0	0.05	15.86	0.00	1.168	25.43	0.41	9.0	90.8	0.3	-2.23	2.93	0.82	0.77	0.52	34208	4192	20	75	2	0	0	logfile
✔	7QV9	14171	2022-12-21	2022-01-20	3.5	3.56	—	3.5	0.021	2.21	183.0	0.13	14.76	0.01	1.898	37.21	10.34	8.2	90.5	1.3	-2.97	0.78	0.71	1.18	3.5	0.005	0.81	0.0	0.04	16.63	0.00	1.172	13.20	0.41	9.3	90.6	0.2	-1.60	1.83	0.79	0.73	1.26	41491	5245	19	72	9	0	0	logfile
✔	6K32	9907	2022-12-12	2019-05-16	3.2	3.73	—	3.8	0.009	1.20	1.0	0.08	11.34	0.01	1.345	10.28	1.25	6.3	93.3	0.3	-4.88	0.28	0.72	1.49	3.7	0.005	0.77	0.0	0.05	16.36	0.00	1.183	13.29	0.74	6.1	93.9	0.1	-1.29	1.62	0.31	0.83	2.35	61364	7723	10	8	6	0	0	logfile
✔	7QH7	13967	2022-12-16	2021-12-10	2.89	4.42	—	2.2	0.007	0.72	0.0	0.04	15.34	0.00	1.147	6.54	3.11	7.6	92.3	0.1	-1.65	0.66	0.59	2.10	2.3	0.003	0.74	0.0	0.04	15.94	0.00	1.191	15.59	2.54	5.0	95.0	0.0	-0.38	0.71	0.89	0.85	1.64	85397	7017	59	1312	53	14	0	logfile
✔	7RPW	24624	2022-12-12	2021-08-04	4.38	4.64	—	4.4	0.003	0.57	0.0	0.04	19.19	0.00	1.756	18.15	9.97	11.3	88.6	0.1	-2.82	0.77	0.68	—	4.4	0.003	0.63	0.0	0.04	18.55	0.00	1.192	15.60	0.00	9.3	90.6	0.1	-2.40	3.75	0.76	0.67	—	10594	1179	10	62	5	0	0	logfile
✔	7NVL	12605	2022-12-13	2021-03-15	2.5	2.63	2.55	2.6	0.005	0.78	0.0	0.05	16.49	0.00	1.915	8.74	1.56	3.2	96.7	0.0	-2.02	0.60	0.73	3.80	2.6	0.005	0.69	0.0	0.04	17.67	0.00	1.197	8.74	2.18	2.9	97.1	0.0	0.76	1.19	0.75	0.86	3.54	66477	8626	50	0	48	27	0	logfile
✔	7KSo	23021	2022-12-13	2020-11-23	3.9	4.08	—	4.0	0.004	0.73	1.0	0.05	11.73	0.00	2.151	3.99	0.29	4.7	95.3	0.0	-3.99	0.68	0.74	1.12	4.0	0.004	0.71	0.0	0.05	15.42	0.00	1.198	14.03	0.59	5.3	94.7	0.0	-1.54	0.81	0.73	0.81	1.57	13075	1690	8	0	8	0	0	logfile

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