Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6KS7	0759	2022-05-13	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.80	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.009	0.91	0.0	0.05	12.10	0.00	1.014	21.96	0.03	3.5	96.4	0.1	-0.25	1.82	0.74	0.68	—	62022	8131	16	0	0	0	0	logfile
✔	6TZ1	20586	2022-05-13	2019-08-09	3.4	3.44	—	3.4	0.008	0.95	0.0	0.05	10.10	0.01	2.207	4.42	0.47	5.1	94.9	0.0	-3.92	0.54	0.85	3.95	3.4	0.003	0.60	0.0	0.04	14.45	0.00	1.020	6.77	0.47	3.9	96.1	0.0	-0.26	1.63	0.54	0.87	3.14	14212	1709	5	23	1	0	0	logfile
✔	7MT3	23975	2022-05-20	2021-05-12	2.8	2.45	—	2.9	0.007	0.79	0.0	0.04	13.62	0.01	1.298	2.44	0.13	7.0	92.9	0.1	-4.52	0.84	0.86	4.06	2.9	0.009	0.72	0.0	0.04	14.29	0.01	1.026	6.28	2.16	7.0	92.9	0.1	-1.23	2.16	0.85	0.88	3.20	147942	5616	68	4835	441	0	0	logfile
✔	7NWW	12636	2022-05-19	2021-03-17	3.05	3.83	3.02	2.9	0.010	0.97	0.0	0.06	14.33	0.02	1.667	7.42	0.49	3.6	96.3	0.2	-3.85	0.89	0.86	3.17	3.0	0.005	0.72	0.0	0.04	15.06	0.01	1.031	14.45	0.66	3.9	96.1	0.0	-0.21	2.45	0.92	0.91	2.56	145149	5738	67	4651	415	0	0	logfile
✔	5o61	3751	2022-05-23	2017-06-03	3.31	3.39	—	3.3	0.007	0.99	0.0	0.04	17.09	0.01	1.579	7.53	10.91	4.7	95.1	0.2	-3.02	0.83	0.88	2.03	3.3	0.005	0.65	1.0	0.04	16.82	0.01	1.034	11.64	0.85	4.8	95.1	0.0	-0.29	0.64	0.82	0.87	1.59	151463	6088	73	4830	631	0	0	logfile
✔	5T62	8362	2022-05-16	2016-09-01	3.3	3.38	—	3.4	0.007	1.13	5.0	0.09	17.39	0.01	1.390	1.92	6.32	8.1	89.7	2.2	-4.03	0.68	0.78	3.21	3.3	0.004	0.71	0.0	0.04	16.50	0.00	1.034	5.77	0.02	6.7	92.7	0.7	-1.65	0.65	0.79	0.86	2.51	131766	7061	57	3483	438	6	0	logfile
✔	3LoS	5137	2022-05-13	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	88.10	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.007	1.33	0.0	0.05	16.09	0.01	1.037	31.44	0.00	20.2	75.6	4.2	-4.47	1.32	0.62	0.54	—	63712	8512	16	0	0	0	0	logfile
✔	6oAB	20000	2022-05-14	2019-03-15	3.6	3.87	3.73	3.8	0.006	1.07	1.0	0.05	16.24	0.01	1.245	9.41	0.34	7.7	92.1	0.2	-5.58	0.68	0.68	0.81	3.7	0.003	0.83	0.0	0.04	17.36	0.00	1.040	12.89	0.19	7.1	92.8	0.1	-1.64	0.95	0.73	0.79	1.04	19690	2537	11	0	18	0	0	logfile
✔	7AC7	11713	2022-05-24	2020-09-10	3.08	3.25	3.06	3.1	0.003	0.58	5.0	0.03	14.38	0.02	1.183	10.10	0.66	3.1	96.7	0.2	-0.42	0.80	0.83	2.85	3.1	0.004	0.62	0.0	0.03	15.67	0.01	1.041	8.63	0.51	3.8	96.1	0.1	-0.05	0.58	0.84	0.89	2.58	154883	5975	71	5017	443	0	0	logfile
✔	6YSU	10908	2022-05-19	2020-04-23	3.7	3.89	3.60	3.7	0.007	0.81	2.0	0.04	16.90	0.02	1.368	20.66	0.17	12.1	87.7	0.2	-4.65	0.83	0.87	1.85	3.7	0.005	0.73	1.0	0.04	16.99	0.01	1.046	18.37	0.83	9.4	90.5	0.1	-1.97	0.41	0.83	0.86	1.57	146399	6030	69	4645	358	0	0	logfile
✔	5ooL	3842	2022-05-17	2017-08-08	3.06	5.10	3.10	4.9	0.009	1.05	2.0	0.06	14.15	0.01	0.037	6.41	0.54	5.0	94.9	0.1	-3.52	0.77	0.61	0.86	4.9	0.005	0.92	0.0	0.05	17.50	0.01	1.048	29.65	1.29	6.3	93.6	0.0	-1.21	1.56	0.87	0.86	0.91	98998	8198	66	1497	124	0	0	logfile
✔	5MPD	3534	2022-05-17	2016-12-16	4.1	4.14	—	4.1	0.035	3.40	330.0	0.20	17.76	0.03	0.656	3.85	2.78	5.6	92.3	2.1	-2.14	0.21	0.37	—	4.1	0.010	1.18	2.0	0.05	15.58	0.01	1.051	28.38	0.00	7.6	92.2	0.3	-1.78	1.92	0.28	0.63	—	40974	5142	13	0	0	0	0	logfile
✔	6Q9A	4478	2022-05-24	2018-12-17	3.7	3.75	—	3.7	0.009	1.13	0.0	0.17	17.46	0.02	1.280	5.74	0.79	9.1	90.9	0.1	-4.18	0.84	0.83	1.58	3.7	0.008	0.82	1.0	0.04	17.06	0.01	1.056	14.42	0.95	8.8	91.2	0.1	-1.71	2.34	0.84	0.82	1.34	155169	6092	70	4996	439	2	0	logfile
✔	6LQM	0948	2022-05-17	2020-01-14	3.09	3.18	—	3.1	0.016	1.30	3.0	0.07	17.19	0.03	1.296	4.36	1.60	7.4	92.4	0.2	-3.93	0.83	0.85	3.33	3.1	0.010	0.97	0.0	0.05	17.38	0.01	1.065	8.95	0.68	7.8	92.1	0.1	-1.70	0.36	0.85	0.88	3.05	139464	7108	53	3808	251	0	0	logfile
✔	5ANB	3146	2022-05-18	2015-09-06	4.1	4.11	—	4.1	0.008	1.31	6.0	0.10	18.54	0.01	1.245	5.13	4.33	13.0	83.9	3.1	-4.17	0.41	0.75	—	4.1	0.007	0.93	0.0	0.04	17.15	0.01	1.065	22.25	0.00	13.2	86.1	0.8	-3.51	0.83	0.39	0.71	—	48493	3025	12	1162	0	0	0	logfile
✔	7S6C	24868	2022-05-13	2021-09-13	3.1	3.69	—	3.3	0.005	0.74	0.0	0.04	13.96	0.00	2.068	4.32	0.00	4.0	96.0	0.0	-0.30	0.82	0.76	2.85	3.3	0.004	0.52	0.0	0.04	14.78	0.00	1.066	9.20	0.16	4.7	95.3	0.0	0.00	0.33	0.84	0.80	2.90	47369	3190	10	0	2	0	23420	logfile
✔	5UYQ	8620	2022-05-24	2017-02-24	3.8	4.28	4.16	3.7	0.007	1.05	0.0	0.09	14.22	0.01	1.314	14.39	1.29	13.9	83.4	2.7	-5.24	0.86	0.79	0.45	3.5	0.006	0.83	0.0	0.04	17.23	0.01	1.067	34.38	0.95	15.2	84.5	0.2	-3.26	1.11	0.87	0.82	0.35	153759	6476	63	4810	2	0	0	logfile
✔	6ZoJ	11320	2022-05-15	2020-07-07	2.8	3.07	—	3.0	0.002	0.51	0.0	0.03	14.31	0.00	1.694	4.49	1.39	2.3	97.7	0.0	0.76	0.80	0.85	3.50	2.9	0.007	0.69	0.0	0.04	16.02	0.01	1.068	5.53	2.64	3.5	96.5	0.0	0.48	2.45	0.81	0.87	3.31	75783	4914	45	1704	169	0	0	logfile
✔	6Q95	4475	2022-05-24	2018-12-17	3.7	3.72	—	3.7	0.012	1.38	0.0	0.06	19.08	0.01	1.247	8.95	1.13	16.6	82.6	0.8	-5.45	0.81	0.82	1.61	3.7	0.006	0.93	1.0	0.04	18.99	0.01	1.072	22.43	0.27	14.0	85.5	0.5	-3.37	1.95	0.80	0.81	1.31	154751	5924	84	4932	910	0	0	logfile
✔	7o5H	12736	2022-05-16	2021-04-08	3.1	2.93	3.04	2.8	0.002	0.33	0.0	0.03	12.30	0.00	1.262	5.95	0.98	2.1	97.9	0.0	1.09	0.86	0.83	1.84	2.8	0.006	0.67	0.0	0.04	14.61	0.01	1.074	13.60	0.42	3.8	96.2	0.0	0.27	1.48	0.87	0.85	1.30	34436	1730	22	964	167	0	0	logfile

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