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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7N0C | 24103 | 2022-12-11 | 2021-05-25 | 3.4 | 3.71 | — | 3.7 | 0.009 | 1.00 | 0.0 | 0.05 | 13.78 | 0.01 | 2.180 | 6.87 | 0.00 | 1.3 | 98.7 | 0.0 | -3.80 | 0.72 | 0.80 | 2.48 | 3.7 | 0.003 | 0.58 | 0.0 | 0.04 | 14.71 | 0.00 | 1.114 | 10.27 | 0.54 | 5.2 | 94.8 | 0.0 | -1.38 | 1.16 | 0.72 | 0.82 | 2.09 | 6088 | 644 | 6 | 49 | 7 | 1 | 0 | logfile |
✔ | 6TPQ | 10543 | 2022-12-16 | 2019-12-13 | 3.07 | 4.01 | — | 3.3 | 0.008 | 0.68 | 0.0 | 0.04 | 16.20 | 0.00 | 1.176 | 12.62 | 0.04 | 9.5 | 90.5 | 0.0 | -4.14 | 0.92 | 0.90 | 2.30 | 3.3 | 0.005 | 0.66 | 0.0 | 0.04 | 16.34 | 0.00 | 1.114 | 12.33 | 1.01 | 7.7 | 92.3 | 0.0 | -1.74 | 0.34 | 0.92 | 0.91 | 1.80 | 91728 | 3346 | 39 | 3047 | 222 | 0 | 0 | logfile |
✔ | 4V19 | 2787 | 2022-12-14 | 2014-09-25 | 3.4 | 3.44 | — | 3.4 | 0.009 | 1.23 | 0.0 | 0.05 | 20.02 | 0.01 | 1.860 | 9.79 | 6.97 | 3.8 | 96.1 | 0.1 | -2.85 | 0.76 | 0.88 | 2.04 | 3.4 | 0.004 | 0.67 | 0.0 | 0.04 | 19.00 | 0.01 | 1.117 | 8.81 | 0.45 | 3.9 | 96.1 | 0.1 | -0.23 | 2.80 | 0.76 | 0.88 | 2.11 | 69409 | 4361 | 42 | 1583 | 171 | 204 | 0 | logfile |
✔ | 6KPJ | 0748 | 2022-12-12 | 2019-08-15 | 2.56 | 3.82 | — | 3.3 | 0.014 | 0.94 | 0.0 | 0.06 | 12.22 | 0.00 | 1.218 | 8.38 | 0.00 | 6.7 | 93.3 | 0.0 | -4.33 | 0.85 | 0.86 | 3.83 | 3.3 | 0.004 | 0.72 | 1.0 | 0.13 | 14.26 | 0.00 | 1.119 | 6.67 | 0.41 | 2.8 | 97.2 | 0.0 | 1.00 | 0.70 | 0.85 | 0.87 | 3.59 | 62845 | 3936 | 24 | 0 | 48 | 0 | 31225 | logfile |
✔ | 6oAA | 0666 | 2022-12-14 | 2019-03-15 | 4.1 | 4.22 | 4.19 | 4.2 | 0.006 | 1.06 | 1.0 | 0.05 | 16.65 | 0.01 | 1.317 | 13.56 | 0.34 | 8.3 | 91.5 | 0.3 | -5.52 | 0.63 | 0.70 | — | 4.2 | 0.003 | 0.86 | 0.0 | 0.05 | 15.60 | 0.00 | 1.126 | 15.26 | 0.00 | 10.2 | 89.7 | 0.1 | -2.39 | 0.90 | 0.67 | 0.76 | — | 19546 | 2494 | 10 | 0 | 14 | 0 | 0 | logfile |
✔ | 6i9R | 4434 | 2022-12-19 | 2018-11-25 | 3.9 | 4.02 | 3.89 | 4.0 | 0.005 | 0.62 | 0.0 | 0.05 | 13.42 | 0.01 | 1.512 | 3.67 | 0.01 | 3.8 | 96.1 | 0.0 | -3.40 | 0.79 | 0.81 | 1.34 | 3.9 | 0.003 | 0.73 | 0.0 | 0.04 | 16.36 | 0.01 | 1.126 | 15.85 | 0.76 | 4.6 | 95.4 | 0.0 | -0.43 | 1.75 | 0.82 | 0.86 | 1.50 | 100274 | 8198 | 62 | 1562 | 139 | 0 | 0 | logfile |
✔ | 5GAH | 8004 | 2022-12-17 | 2015-11-26 | 3.8 | 3.97 | — | 3.9 | 0.008 | 1.10 | 0.0 | 0.05 | 15.97 | 0.01 | 1.737 | 8.39 | 11.31 | 3.3 | 96.7 | 0.1 | -3.33 | 0.73 | 0.85 | 1.12 | 3.9 | 0.004 | 0.61 | 0.0 | 0.03 | 15.18 | 0.00 | 1.128 | 13.43 | 0.65 | 3.7 | 96.2 | 0.1 | -0.58 | 1.17 | 0.73 | 0.87 | 1.36 | 94027 | 3595 | 46 | 3049 | 473 | 0 | 0 | logfile |
✔ | 6ZoL | 11322 | 2022-12-15 | 2020-07-07 | 2.8 | 3.00 | 2.78 | 2.9 | 0.003 | 0.55 | 0.0 | 0.04 | 14.47 | 0.00 | 1.309 | 4.19 | 1.49 | 3.0 | 97.0 | 0.0 | 0.69 | 0.75 | 0.87 | 3.29 | 2.9 | 0.003 | 0.56 | 0.0 | 0.04 | 16.40 | 0.00 | 1.131 | 5.41 | 1.97 | 3.4 | 96.6 | 0.0 | 0.80 | 2.44 | 0.77 | 0.89 | 2.86 | 25591 | 1944 | 22 | 472 | 59 | 0 | 0 | logfile |
✔ | 7EN1 | 31199 | 2022-12-20 | 2021-04-15 | 3.47 | 3.85 | 3.42 | 3.6 | 0.013 | 1.97 | 7.0 | 0.10 | 15.10 | 0.02 | 1.796 | 1.13 | 1.72 | 5.2 | 94.6 | 0.3 | -2.33 | 0.86 | 0.77 | 2.39 | 3.6 | 0.004 | 0.65 | 0.0 | 0.04 | 15.14 | 0.00 | 1.144 | 13.61 | 0.05 | 5.2 | 94.8 | 0.0 | -0.10 | 0.80 | 0.86 | 0.79 | 2.08 | 40862 | 2656 | 4 | 0 | 8 | 0 | 20419 | logfile |
✔ | 6B6H | 7059 | 2022-12-14 | 2017-10-02 | 3.9 | 4.15 | — | 3.7 | 0.008 | 0.96 | 0.0 | 0.05 | 15.91 | 0.01 | 1.944 | 6.27 | 0.03 | 8.9 | 91.0 | 0.2 | -4.47 | 0.71 | 0.48 | 1.58 | 3.8 | 0.004 | 0.65 | 0.0 | 0.04 | 17.24 | 0.00 | 1.146 | 12.75 | 0.14 | 9.1 | 90.9 | 0.0 | -1.49 | 1.52 | 0.84 | 0.65 | 1.31 | 72070 | 4188 | 15 | 178 | 6 | 0 | 35400 | logfile |
✔ | 7LXT | 23574 | 2022-12-22 | 2021-03-05 | 3.4 | 3.70 | 3.40 | 3.7 | 0.009 | 0.85 | 0.0 | 0.05 | 14.67 | 0.00 | 1.972 | 18.16 | 0.79 | 10.7 | 89.3 | 0.0 | -2.90 | 0.75 | 0.82 | 2.36 | 3.7 | 0.004 | 0.64 | 0.0 | 0.04 | 16.41 | 0.00 | 1.153 | 13.20 | 0.41 | 7.2 | 92.8 | 0.0 | -1.48 | 0.42 | 0.76 | 0.84 | 1.61 | 50536 | 6318 | 34 | 0 | 6 | 0 | 0 | logfile |
✔ | 6ZJL | 11235 | 2022-12-19 | 2020-06-29 | 4.3 | 4.31 | — | 4.3 | 0.021 | 2.33 | 37.0 | 1.41 | 15.36 | 0.02 | 2.162 | 2.90 | 2.43 | 9.6 | 87.6 | 2.9 | -4.76 | 0.55 | 0.77 | — | 4.3 | 0.012 | 2.29 | 0.0 | 0.44 | 14.31 | 0.00 | 1.162 | 17.06 | 0.03 | 5.2 | 94.6 | 0.3 | -0.50 | 2.05 | 0.56 | 0.79 | — | 36057 | 4646 | 20 | 0 | 10 | 0 | 0 | logfile |
✔ | 7BoH | 12243 | 2022-12-22 | 2021-01-25 | 2.82 | 3.09 | 2.90 | 2.8 | 0.006 | 0.62 | 4.0 | 0.04 | 13.89 | 0.02 | 0.657 | 6.33 | 0.00 | 3.3 | 96.7 | 0.0 | -1.47 | 0.82 | 0.80 | 2.52 | 2.8 | 0.004 | 0.66 | 0.0 | 0.03 | 14.91 | 0.01 | 1.164 | 12.55 | 2.38 | 3.8 | 96.2 | 0.0 | 0.09 | 0.60 | 0.87 | 0.90 | 2.21 | 52154 | 2445 | 25 | 1527 | 157 | 0 | 0 | logfile |
✔ | 7TR9 | 26083 | 2022-12-18 | 2022-01-28 | 3.9 | 4.30 | — | 4.1 | 0.003 | 0.68 | 2.0 | 0.05 | 13.00 | 0.00 | 1.387 | 16.29 | 0.17 | 8.7 | 90.9 | 0.4 | -2.44 | 0.80 | 0.72 | 0.00 | 4.0 | 0.003 | 0.79 | 0.0 | 0.05 | 15.86 | 0.00 | 1.168 | 25.43 | 0.41 | 9.0 | 90.8 | 0.3 | -2.23 | 2.93 | 0.82 | 0.77 | 0.52 | 34208 | 4192 | 20 | 75 | 2 | 0 | 0 | logfile |
✔ | 7QV9 | 14171 | 2022-12-21 | 2022-01-20 | 3.5 | 3.56 | — | 3.5 | 0.021 | 2.21 | 183.0 | 0.13 | 14.76 | 0.01 | 1.898 | 37.21 | 10.34 | 8.2 | 90.5 | 1.3 | -2.97 | 0.78 | 0.71 | 1.18 | 3.5 | 0.005 | 0.81 | 0.0 | 0.04 | 16.63 | 0.00 | 1.172 | 13.20 | 0.41 | 9.3 | 90.6 | 0.2 | -1.60 | 1.83 | 0.79 | 0.73 | 1.26 | 41491 | 5245 | 19 | 72 | 9 | 0 | 0 | logfile |
✔ | 6K32 | 9907 | 2022-12-12 | 2019-05-16 | 3.2 | 3.73 | — | 3.8 | 0.009 | 1.20 | 1.0 | 0.08 | 11.34 | 0.01 | 1.345 | 10.28 | 1.25 | 6.3 | 93.3 | 0.3 | -4.88 | 0.28 | 0.72 | 1.49 | 3.7 | 0.005 | 0.77 | 0.0 | 0.05 | 16.36 | 0.00 | 1.183 | 13.29 | 0.74 | 6.1 | 93.9 | 0.1 | -1.29 | 1.62 | 0.31 | 0.83 | 2.35 | 61364 | 7723 | 10 | 8 | 6 | 0 | 0 | logfile |
✔ | 7QH7 | 13967 | 2022-12-16 | 2021-12-10 | 2.89 | 4.42 | — | 2.2 | 0.007 | 0.72 | 0.0 | 0.04 | 15.34 | 0.00 | 1.147 | 6.54 | 3.11 | 7.6 | 92.3 | 0.1 | -1.65 | 0.66 | 0.59 | 2.10 | 2.3 | 0.003 | 0.74 | 0.0 | 0.04 | 15.94 | 0.00 | 1.191 | 15.59 | 2.54 | 5.0 | 95.0 | 0.0 | -0.38 | 0.71 | 0.89 | 0.85 | 1.64 | 85397 | 7017 | 59 | 1312 | 53 | 14 | 0 | logfile |
✔ | 7RPW | 24624 | 2022-12-12 | 2021-08-04 | 4.38 | 4.64 | — | 4.4 | 0.003 | 0.57 | 0.0 | 0.04 | 19.19 | 0.00 | 1.756 | 18.15 | 9.97 | 11.3 | 88.6 | 0.1 | -2.82 | 0.77 | 0.68 | — | 4.4 | 0.003 | 0.63 | 0.0 | 0.04 | 18.55 | 0.00 | 1.192 | 15.60 | 0.00 | 9.3 | 90.6 | 0.1 | -2.40 | 3.75 | 0.76 | 0.67 | — | 10594 | 1179 | 10 | 62 | 5 | 0 | 0 | logfile |
✔ | 7NVL | 12605 | 2022-12-13 | 2021-03-15 | 2.5 | 2.63 | 2.55 | 2.6 | 0.005 | 0.78 | 0.0 | 0.05 | 16.49 | 0.00 | 1.915 | 8.74 | 1.56 | 3.2 | 96.7 | 0.0 | -2.02 | 0.60 | 0.73 | 3.80 | 2.6 | 0.005 | 0.69 | 0.0 | 0.04 | 17.67 | 0.00 | 1.197 | 8.74 | 2.18 | 2.9 | 97.1 | 0.0 | 0.76 | 1.19 | 0.75 | 0.86 | 3.54 | 66477 | 8626 | 50 | 0 | 48 | 27 | 0 | logfile |
✔ | 7KSo | 23021 | 2022-12-13 | 2020-11-23 | 3.9 | 4.08 | — | 4.0 | 0.004 | 0.73 | 1.0 | 0.05 | 11.73 | 0.00 | 2.151 | 3.99 | 0.29 | 4.7 | 95.3 | 0.0 | -3.99 | 0.68 | 0.74 | 1.12 | 4.0 | 0.004 | 0.71 | 0.0 | 0.05 | 15.42 | 0.00 | 1.198 | 14.03 | 0.59 | 5.3 | 94.7 | 0.0 | -1.54 | 0.81 | 0.73 | 0.81 | 1.57 | 13075 | 1690 | 8 | 0 | 8 | 0 | 0 | logfile |