Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oH4	12893	2023-08-12	2021-05-09	3.0	3.58	3.12	3.4	0.003	0.73	0.0	0.04	10.95	0.00	2.021	6.46	1.36	4.0	96.0	0.0	-3.11	0.64	0.70	2.09	3.5	0.002	0.59	0.0	0.04	13.67	0.00	2.024	7.85	2.23	2.7	97.3	0.0	-0.57	1.16	0.65	0.73	1.69	11535	1414	8	0	11	3	0	logfile
✔	7MiD	23847	2023-08-11	2021-04-16	3.56	4.10	—	3.9	0.010	1.02	0.0	0.06	20.24	0.01	0.918	14.61	5.73	8.6	91.3	0.1	-1.30	0.76	0.66	0.22	4.0	0.003	0.72	0.0	0.04	20.05	0.00	2.148	11.09	0.11	5.9	94.1	0.0	0.00	1.89	0.81	0.81	0.91	9789	1080	11	57	6	0	0	logfile
✔	7Y82	33678	2023-08-12	2022-06-22	2.83	2.38	2.88	3.0	0.003	0.57	0.0	0.04	18.57	0.00	1.887	16.18	4.59	1.8	98.2	0.0	0.77	0.77	0.81	2.77	3.0	0.003	0.56	0.0	0.04	18.86	0.00	1.907	15.51	4.68	2.2	97.8	0.0	0.90	0.27	0.70	0.79	2.77	12278	1341	4	66	5	0	0	logfile
✔	6Wi1	21682	2023-08-17	2020-04-08	3.62	4.11	—	3.9	0.007	0.84	0.0	0.10	13.82	0.01	2.127	13.72	0.70	14.5	85.1	0.4	-4.55	0.75	0.75	1.81	3.9	0.003	0.75	0.0	0.04	15.11	0.00	2.054	10.38	0.26	9.8	90.0	0.2	-1.28	0.51	0.77	0.81	1.34	23366	3182	12	0	16	0	0	logfile
✔	8A9B	15275	2023-08-09	2022-06-28	4.0	4.28	3.95	4.1	0.004	0.88	0.0	0.05	14.89	0.00	2.113	20.52	0.00	14.8	84.2	1.0	-3.17	0.67	0.58	—	4.1	0.004	0.77	0.0	0.05	17.05	0.00	2.139	20.83	0.43	14.8	84.4	0.7	-2.95	0.53	0.71	0.64	—	6386	809	1	0	0	0	0	logfile
✔	7N0N	24110	2023-08-16	2021-05-25	4.15	4.37	—	4.2	0.006	1.01	0.0	0.06	14.98	0.01	2.243	4.69	0.38	3.6	96.4	0.0	-2.21	0.68	0.80	—	4.2	0.003	0.64	0.0	0.04	15.20	0.00	2.202	9.31	0.00	3.3	96.7	0.0	0.66	1.12	0.69	0.80	—	19632	2468	4	0	0	0	0	logfile
✔	7K48	22661	2023-08-10	2020-09-15	3.6	4.15	4.07	4.1	0.010	1.23	0.0	0.06	17.88	0.01	2.233	5.29	3.40	7.4	92.6	0.0	-3.52	0.48	0.75	1.45	4.1	0.004	0.92	0.0	0.04	18.57	0.00	2.049	20.13	0.21	5.8	94.2	0.0	-0.19	1.95	0.47	0.74	1.45	8480	1048	8	0	0	0	0	logfile
✔	7FB3	31513	2023-08-17	2021-07-08	3.1	3.73	—	3.7	0.003	0.65	0.0	0.04	14.25	0.00	2.114	9.15	0.23	8.2	91.8	0.0	-4.11	0.74	0.81	2.06	3.6	0.003	0.59	0.0	0.04	15.86	0.00	2.103	8.31	0.12	6.2	93.8	0.0	-1.30	1.98	0.73	0.81	1.95	22920	2936	3	0	0	0	0	logfile
✔	7DTY	30860	2023-08-11	2021-01-06	2.98	3.67	—	3.4	0.004	0.78	0.0	0.06	8.24	0.01	2.249	4.31	0.00	1.8	98.2	0.0	-1.30	0.66	0.78	2.56	3.4	0.003	0.67	0.0	0.04	14.33	0.00	2.173	11.08	2.23	2.7	97.3	0.0	1.18	1.41	0.68	0.82	2.36	9407	1156	7	0	6	0	0	logfile
✔	7B5D	12026	2023-08-12	2020-12-03	3.3	3.47	3.28	3.5	0.005	0.84	0.0	0.05	15.10	0.01	2.225	4.67	0.96	7.2	92.8	0.0	-3.54	0.68	0.80	2.47	3.5	0.004	0.65	0.0	0.04	16.18	0.00	2.209	9.39	0.32	6.4	93.6	0.0	-0.10	1.51	0.68	0.84	2.43	11462	1402	2	0	0	0	0	logfile
✔	7oH7	12896	2023-08-12	2021-05-09	3.8	4.09	3.79	3.9	0.004	0.83	0.0	0.04	11.67	0.00	2.086	7.11	1.20	4.7	95.3	0.0	-3.01	0.64	0.69	1.65	4.0	0.004	0.75	0.0	0.04	14.51	0.00	1.924	15.86	0.48	4.5	95.5	0.0	-1.15	1.68	0.65	0.73	1.40	11552	1414	6	0	11	3	0	logfile
✔	6NY1	8994	2023-08-11	2019-02-10	4.2	4.56	—	4.3	0.007	1.11	0.0	0.06	21.20	0.01	2.099	9.52	0.33	18.6	81.0	0.4	-4.84	0.80	0.80	—	4.4	0.003	0.72	0.0	0.04	20.36	0.00	2.150	15.20	0.00	16.3	83.6	0.1	-2.23	0.59	0.79	0.78	—	9911	783	4	154	121	0	0	logfile
✔	6NY3	8980	2023-08-11	2019-02-10	3.7	4.08	—	4.0	0.009	1.13	0.0	0.06	19.98	0.01	2.251	4.71	0.33	16.9	82.5	0.6	-5.84	0.76	0.84	1.41	4.0	0.003	0.66	0.0	0.04	19.90	0.00	2.137	9.68	0.66	15.7	84.1	0.1	-1.78	1.01	0.66	0.77	0.74	10214	794	4	164	121	0	0	logfile
✔	7FFQ	31571	2023-08-18	2021-07-23	3.5	3.66	—	3.6	0.007	0.93	0.0	0.06	9.31	0.01	2.267	4.48	0.18	6.5	93.5	0.1	-3.45	0.48	0.76	2.43	3.6	0.003	0.68	0.0	0.04	13.97	0.00	2.131	10.16	0.33	5.1	94.8	0.1	-0.87	0.99	0.50	0.83	2.64	24808	3208	12	0	0	0	0	logfile
✔	5U1D	8482	2023-08-10	2016-11-28	3.97	4.06	—	4.3	0.007	1.17	0.0	0.05	12.05	0.00	2.452	0.07	0.84	5.7	94.1	0.2	-2.16	0.36	0.48	1.30	4.1	0.004	0.78	0.0	0.04	15.89	0.00	2.058	14.10	0.51	4.7	95.2	0.1	0.93	1.07	0.52	0.75	1.63	7815	1168	3	0	0	0	0	logfile
✔	7XMG	33296	2023-08-12	2022-04-25	3.09	3.36	3.11	3.4	0.007	0.84	1.0	0.13	16.90	0.01	2.017	20.33	4.46	7.3	92.4	0.3	-2.84	0.50	0.67	1.81	3.4	0.003	0.69	0.0	0.04	17.61	0.00	2.069	12.15	0.31	5.8	94.2	0.0	-0.35	1.18	0.55	0.76	1.63	11692	1431	7	0	10	0	0	logfile
✔	6H5i	0140	2023-08-09	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.64	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.7	0.003	0.67	0.0	0.04	15.36	0.00	2.097	14.22	0.32	4.1	95.9	0.0	1.46	1.26	0.37	0.24	0.27	43900	5392	26	0	0	0	0	logfile
✔	7EJ0	31147	2023-08-10	2021-04-01	3.2	3.48	—	4.0	0.009	1.12	7.0	0.08	13.71	0.01	1.736	21.36	0.43	6.5	93.5	0.0	-0.98	0.57	0.80	2.10	4.0	0.004	0.76	0.0	0.05	16.30	0.00	2.133	14.22	0.75	7.3	92.7	0.0	-0.73	0.62	0.58	0.83	2.10	8600	1099	5	0	1	0	0	logfile
✔	7V96	31810	2023-08-17	2021-08-24	3.92	4.00	3.84	4.0	0.011	1.59	35.0	0.11	30.67	0.01	1.891	6.46	15.66	4.7	94.5	0.8	-1.38	0.71	0.74	1.81	4.0	0.005	0.66	0.0	0.04	28.95	0.00	2.187	10.97	0.53	5.6	94.2	0.2	-1.06	1.19	0.76	0.82	1.31	23968	1593	18	550	0	0	0	logfile
✔	6ND0	0439	2023-08-17	2018-12-13	3.5	3.65	—	3.6	0.008	0.94	0.0	0.06	10.80	0.01	2.178	5.06	0.43	7.8	92.0	0.2	-4.62	0.60	0.75	3.00	3.6	0.003	0.67	0.0	0.04	14.64	0.00	2.110	9.60	0.27	6.0	93.9	0.1	-1.29	0.83	0.67	0.80	2.26	22964	2908	4	0	0	0	0	logfile

• ← previous
• Page 3 of 542
• next →