Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5K7L	8215	2022-12-16	2016-05-26	3.78	6.86	—	3.4	0.008	1.37	25.0	0.07	13.26	0.00	2.314	7.95	0.35	7.3	92.6	0.1	-0.20	0.69	0.55	1.02	3.5	0.003	0.62	0.0	0.04	13.82	0.00	2.163	9.16	0.00	3.5	96.5	0.0	1.54	0.60	0.70	0.68	0.78	30870	4215	15	0	10	0	0	logfile
✔	4V1A	2787	2022-12-16	2014-09-25	3.4	3.43	—	3.4	0.009	1.29	0.0	0.05	13.81	0.01	2.067	12.20	6.03	4.6	95.3	0.1	-2.62	0.37	0.78	1.69	3.4	0.003	0.69	0.0	0.04	16.83	0.00	2.076	10.41	0.15	4.3	95.6	0.1	0.54	1.91	0.38	0.78	1.67	31917	3843	24	0	94	0	0	logfile
✔	6RLB	4918	2022-12-14	2019-05-01	4.5	4.85	4.49	4.3	0.007	0.95	0.0	0.06	4.70	0.00	2.082	0.71	0.00	4.0	95.9	0.0	-1.08	0.80	0.63	—	4.2	0.003	0.72	0.0	0.04	5.19	0.00	2.243	3.44	0.00	11.3	88.6	0.0	-0.76	1.85	0.86	0.66	—	20407	4122	14	0	0	0	0	logfile
✔	6N38	9341	2022-12-15	2018-11-14	3.7	3.82	—	3.8	0.013	1.29	0.0	0.08	10.00	0.01	2.216	1.46	0.31	2.7	97.2	0.1	0.10	0.78	0.79	2.54	3.7	0.003	0.65	0.0	0.04	14.34	0.00	2.182	6.61	0.16	2.3	97.7	0.0	0.92	0.83	0.80	0.82	2.17	24456	3098	11	0	39	0	0	logfile
✔	6PSY	20468	2022-12-12	2019-07-14	2.8	2.96	—	3.0	0.007	1.08	0.0	0.06	11.32	0.01	2.256	8.88	0.40	8.3	91.7	0.0	-4.87	0.59	0.74	3.67	3.0	0.004	0.68	0.0	0.04	16.61	0.00	2.184	14.29	2.85	7.4	92.6	0.0	-1.24	1.26	0.64	0.80	3.07	11540	1429	4	0	4	0	0	logfile
✔	6SST	10305	2022-12-11	2019-09-09	3.4	3.46	—	3.4	0.009	0.94	0.0	0.07	16.79	0.00	2.430	5.73	2.13	10.1	89.9	0.0	-4.47	0.56	0.80	6.33	3.4	0.005	0.69	0.0	0.05	15.22	0.00	2.342	10.76	0.21	14.6	85.4	0.0	-4.82	0.49	0.59	0.84	5.27	4900	730	10	0	0	0	0	logfile
✔	6N30	9335	2022-12-19	2018-11-14	3.2	3.45	3.17	3.4	0.011	1.27	10.0	0.07	10.68	0.01	0.590	11.93	0.78	4.1	95.8	0.2	-2.69	0.63	0.73	4.10	3.4	0.003	0.71	0.0	0.05	13.87	0.00	1.930	11.42	0.35	3.9	96.1	0.0	0.56	1.19	0.70	0.85	3.10	34851	4694	27	0	26	0	0	logfile
✔	6KS8	0760	2022-12-12	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.95	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.004	0.80	1.0	0.05	11.72	0.00	2.042	24.03	0.00	4.6	95.3	0.0	-0.71	1.94	0.82	0.74	—	61943	8120	16	0	0	0	0	logfile
✔	6iG9	9664	2022-12-13	2018-09-25	4.6	5.44	4.27	4.3	0.007	1.07	0.0	0.05	9.51	0.01	2.299	9.69	0.73	10.2	89.7	0.2	-3.99	0.69	0.65	—	4.2	0.002	0.65	0.0	0.04	4.80	0.00	2.253	1.55	0.00	8.0	92.0	0.0	1.51	1.56	0.84	0.79	—	17122	3386	1	0	0	0	0	logfile
✔	6MHW	9120	2022-12-18	2018-09-18	4.0	4.10	3.97	4.0	0.004	0.62	0.0	0.13	7.02	0.00	1.933	7.04	0.00	3.4	96.6	0.0	-2.09	0.79	0.77	—	4.0	0.003	0.67	0.0	0.12	12.85	0.00	1.905	10.25	0.25	5.4	94.6	0.0	1.46	1.49	0.79	0.79	—	34414	2452	4	0	0	0	16514	logfile
✔	6DJM	7936	2022-12-12	2018-05-25	3.1	3.26	—	3.2	0.010	1.01	0.0	0.06	10.99	0.01	2.069	3.69	0.00	4.2	95.8	0.0	-4.16	0.67	0.84	3.65	3.2	0.003	0.57	0.0	0.04	15.21	0.00	1.964	7.54	0.16	4.1	95.9	0.0	-0.33	1.26	0.68	0.86	2.94	11768	1488	12	0	8	4	0	logfile
✔	5YW7	6847	2022-12-12	2017-11-29	4.4	4.45	4.13	4.3	0.004	0.71	1.0	0.05	13.01	0.01	2.246	14.19	6.49	4.3	95.7	0.0	-2.58	0.70	0.79	—	4.3	0.003	0.71	0.0	0.04	13.20	0.00	2.213	13.09	0.00	3.6	96.4	0.0	0.59	1.48	0.71	0.80	—	8944	1140	1	0	2	0	0	logfile
✔	6K0B	9900	2022-12-15	2019-05-05	4.3	4.49	—	4.2	0.003	0.78	0.0	0.04	14.21	0.01	2.011	5.73	0.66	6.1	93.9	0.0	-3.67	0.84	0.69	—	4.2	0.003	0.67	0.0	0.04	15.17	0.00	2.093	21.43	0.00	7.3	92.6	0.1	-0.56	1.78	0.88	0.79	—	25908	1376	16	682	2	0	0	logfile
✔	5A2Q	3019	2022-12-15	2015-05-21	3.9	4.01	—	3.9	0.008	1.23	0.0	0.05	19.81	0.01	1.830	13.41	12.93	4.3	95.5	0.2	-3.44	0.89	0.88	1.18	3.9	0.004	0.72	0.0	0.04	18.72	0.00	1.818	15.77	0.82	5.1	94.8	0.1	-0.34	1.60	0.86	0.82	1.23	80749	4931	45	1922	115	144	0	logfile
✔	6DG8	7883	2022-12-13	2018-05-17	3.89	4.70	—	3.8	0.005	1.17	0.0	0.06	12.55	0.01	1.916	4.89	0.55	4.4	95.6	0.0	-3.46	0.82	0.75	1.19	3.8	0.003	0.73	0.0	0.04	14.17	0.00	2.175	12.23	0.17	5.3	94.7	0.0	-1.49	0.80	0.85	0.83	1.48	16715	1955	24	0	40	0	0	logfile
✔	6N3A	9349	2022-12-11	2018-11-14	3.3	3.44	—	3.6	0.008	1.14	0.0	0.05	14.53	0.01	2.469	17.25	0.00	8.9	91.1	0.0	-5.23	0.49	0.76	3.75	3.6	0.005	0.96	0.0	0.04	19.28	0.00	2.210	17.25	2.05	10.2	89.8	0.0	-5.15	1.99	0.51	0.79	2.70	4310	600	20	0	0	0	0	logfile
✔	6J0F	9763	2022-12-14	2018-12-24	3.8	3.95	—	3.9	0.007	1.04	0.0	0.06	15.76	0.01	2.265	5.30	2.19	4.9	95.1	0.0	-4.54	0.64	0.86	2.41	3.9	0.005	0.80	0.0	0.05	17.01	0.00	2.141	12.00	0.78	7.5	92.5	0.0	-1.35	2.05	0.64	0.86	2.05	19314	2472	12	0	0	0	0	logfile
✔	6MHV	9119	2022-12-19	2018-09-18	3.5	3.64	3.43	3.6	0.006	0.85	4.0	0.13	7.65	0.00	1.624	6.49	0.00	4.1	95.9	0.0	-1.96	0.75	0.80	3.89	3.6	0.003	0.65	0.0	0.12	13.50	0.00	1.948	6.18	0.06	3.3	96.7	0.0	1.94	1.85	0.76	0.82	3.89	35496	2452	4	0	0	0	17152	logfile
✔	5WRG	6679	2022-12-13	2016-12-01	4.3	4.45	—	4.3	0.007	1.37	0.0	0.07	12.06	0.01	2.191	9.91	0.53	18.0	81.4	0.7	-5.05	0.66	0.69	—	4.3	0.003	1.10	0.0	0.05	12.22	0.00	1.996	18.90	0.00	17.5	82.3	0.1	-3.22	1.51	0.68	0.76	—	16317	2208	3	0	0	0	0	logfile
✔	6PDT	20309	2022-12-16	2019-06-19	3.8	3.95	—	3.9	0.022	2.06	0.0	0.21	11.05	0.01	1.771	1.30	0.00	1.9	97.7	0.4	0.40	0.73	0.73	1.74	3.9	0.005	0.94	0.0	0.04	14.91	0.00	1.722	11.32	0.23	6.9	93.1	0.0	0.42	2.53	0.76	0.79	1.58	31364	2000	8	0	12	0	15636	logfile

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