Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WCA	21604	2022-07-03	2020-03-30	3.03	3.15	—	3.1	0.003	0.61	0.0	0.04	15.59	0.00	2.102	8.00	1.94	3.0	97.0	0.0	-0.15	0.54	0.77	2.04	3.2	0.003	0.55	0.0	0.04	15.80	0.00	1.829	6.37	0.00	2.3	97.7	0.0	3.33	0.64	0.54	0.79	2.03	11645	734	6	0	5	26	5910	logfile
✔	6ZGi	11207	2022-07-05	2020-06-18	2.9	3.12	3.02	3.1	0.006	0.76	0.0	0.05	12.43	0.00	2.317	1.64	0.73	4.2	95.7	0.1	-0.93	0.75	0.83	4.10	3.1	0.003	0.57	0.0	0.04	14.51	0.00	2.122	2.72	1.32	3.9	96.0	0.0	-0.41	1.19	0.75	0.85	3.84	26901	3294	33	0	78	0	0	logfile
✔	6TSV	10566	2022-07-05	2019-12-21	3.78	3.86	—	3.8	0.011	1.20	0.0	0.08	11.73	0.01	2.334	11.82	0.00	10.6	89.4	0.0	-4.47	0.82	0.85	2.68	3.8	0.005	0.95	0.0	0.05	16.80	0.00	2.107	23.61	1.40	9.7	90.3	0.0	-2.84	1.69	0.84	0.86	1.00	23832	3216	24	0	0	0	0	logfile
✔	6U8N	20688	2022-07-06	2019-09-05	3.29	2.64	3.25	3.7	0.019	1.89	0.0	0.08	15.10	0.01	2.260	8.00	9.05	8.3	91.3	0.4	-4.35	0.60	0.79	2.85	3.7	0.003	0.78	0.0	0.05	16.58	0.00	2.140	16.81	0.61	8.4	91.6	0.0	-1.60	1.98	0.58	0.78	2.14	31528	4016	24	0	32	0	0	logfile
✔	6Wi9	21683	2022-07-03	2020-04-09	4.3	4.37	4.24	4.3	0.002	0.50	0.0	0.04	12.85	0.00	2.214	5.55	0.00	4.2	95.8	0.0	-3.72	0.77	0.78	—	4.3	0.004	0.73	0.0	0.04	13.93	0.00	2.087	14.27	0.00	6.6	93.4	0.0	-0.58	0.80	0.78	0.78	—	8550	1108	6	0	0	0	0	logfile
✔	6UDP	20742	2022-07-05	2019-09-19	2.95	3.18	2.74	3.2	0.007	0.87	0.0	0.06	10.71	0.01	2.340	4.12	0.67	2.4	97.6	0.0	-3.38	0.60	0.87	5.25	3.2	0.005	0.60	0.0	0.05	14.63	0.00	2.217	7.72	3.06	2.9	97.1	0.0	-0.40	0.93	0.61	0.89	4.01	22728	3008	16	0	8	0	0	logfile
✔	6M04	30029	2022-07-06	2020-02-20	4.36	4.48	4.25	4.3	0.006	1.28	0.0	0.07	13.63	0.01	2.245	9.83	1.93	12.5	87.5	0.0	-5.02	0.74	0.74	—	4.3	0.004	0.87	0.0	0.05	13.93	0.00	2.106	22.51	0.00	11.3	88.7	0.0	-2.91	0.93	0.75	0.76	—	34666	4282	6	0	0	0	0	logfile
✔	6ZGF	11204	2022-07-05	2020-06-18	3.1	3.27	3.13	3.2	0.007	0.84	0.0	0.07	13.24	0.02	2.112	5.28	0.76	6.5	93.5	0.0	-2.49	0.80	0.85	3.88	3.2	0.003	0.60	0.0	0.04	14.56	0.00	2.217	4.66	0.18	5.6	94.4	0.0	-1.44	0.37	0.82	0.87	3.45	26163	3180	36	0	93	0	0	logfile
✔	7A5S	11647	2022-07-04	2020-08-21	3.9	4.25	3.95	4.0	0.006	0.93	4.0	0.06	13.36	0.01	1.188	5.87	0.65	6.9	92.7	0.4	-2.00	0.79	0.67	1.92	4.0	0.005	0.68	0.0	0.05	14.54	0.00	2.134	9.91	0.00	6.3	93.7	0.0	-1.28	1.36	0.87	0.82	2.05	16608	2124	8	0	4	0	0	logfile
✔	6TFK	10493	2022-07-07	2019-11-14	2.9	3.06	2.94	3.1	0.002	0.47	0.0	0.04	9.64	0.00	1.917	7.45	0.24	9.1	90.9	0.0	-2.49	0.72	0.77	2.62	3.0	0.004	0.60	0.0	0.04	13.82	0.00	1.936	8.58	1.67	7.6	92.2	0.1	-0.88	0.72	0.72	0.78	2.62	43237	2724	5	0	1	0	21544	logfile
✔	6YW6	10959	2022-07-04	2020-04-29	4.2	4.50	—	4.3	0.007	1.15	2.0	0.07	10.85	0.01	2.164	11.43	0.73	6.2	93.5	0.3	-4.53	0.85	0.78	—	4.3	0.003	0.68	0.0	0.04	12.00	0.00	2.144	13.53	0.07	4.4	95.6	0.0	-1.34	2.52	0.86	0.77	—	13823	1722	9	0	2	0	0	logfile
✔	6LMW	0922	2022-07-03	2019-12-26	3.4	3.55	3.21	3.5	0.007	0.91	0.0	0.05	15.33	0.01	2.292	2.21	0.63	1.6	98.4	0.0	-5.34	0.53	0.73	3.03	3.5	0.003	0.62	0.0	0.04	16.43	0.00	2.202	5.83	0.63	1.1	98.9	0.0	2.18	0.41	0.66	0.83	2.24	11624	1472	8	0	0	0	0	logfile
✔	6LZ1	30021	2022-07-06	2020-02-17	3.2	3.36	3.57	3.3	0.005	0.61	0.0	0.05	15.47	0.00	2.099	11.18	2.52	7.7	92.3	0.0	-3.40	0.87	0.86	3.56	3.3	0.003	0.57	0.0	0.04	16.17	0.00	2.063	10.40	0.26	6.2	93.8	0.0	-1.34	0.36	0.86	0.87	3.45	34492	4304	8	0	4	0	0	logfile
✔	6ZGG	11205	2022-07-05	2020-06-18	3.8	4.33	4.00	4.0	0.001	0.41	0.0	0.04	5.80	0.00	2.231	3.83	1.00	12.4	87.1	0.5	-2.52	0.84	0.74	0.73	4.0	0.004	0.68	0.0	0.04	11.53	0.00	2.149	9.60	0.11	4.9	95.1	0.0	-0.82	1.78	0.87	0.82	1.18	25096	3207	3	0	0	0	0	logfile
✔	6X3T	22032	2022-07-04	2020-05-21	2.55	2.18	2.60	2.5	0.004	0.61	0.0	0.04	13.07	0.00	2.171	6.12	2.28	3.0	97.0	0.0	-0.78	0.73	0.82	4.33	2.5	0.003	0.57	0.0	0.04	15.76	0.00	2.138	6.69	2.55	2.3	97.7	0.0	1.08	0.39	0.76	0.84	4.07	17415	2121	18	0	27	0	0	logfile
✔	6TFJ	10492	2022-07-08	2019-11-14	2.9	3.01	2.90	3.0	0.002	0.43	0.0	0.04	9.89	0.00	2.013	6.81	0.11	8.4	91.6	0.0	-2.53	0.70	0.73	2.51	3.0	0.003	0.56	0.0	0.04	14.94	0.00	1.962	9.16	1.53	7.1	92.9	0.1	-0.73	1.31	0.70	0.75	2.11	48340	3058	4	0	0	0	24098	logfile
✔	6TBU	10452	2022-07-04	2019-11-04	3.16	3.52	—	3.4	0.012	1.50	0.0	0.18	15.74	0.00	1.526	6.06	0.00	5.0	94.9	0.1	-1.99	0.72	0.80	3.61	3.4	0.003	0.71	0.0	0.15	16.40	0.00	2.041	11.19	0.41	4.5	95.5	0.0	1.51	1.12	0.70	0.83	3.46	13733	842	3	0	12	0	6645	logfile
✔	6VX6	21431	2022-07-04	2020-02-21	3.0	3.24	—	3.2	0.005	0.82	0.0	0.05	14.09	0.00	2.260	4.77	0.94	1.9	98.1	0.0	-5.69	0.76	0.87	3.72	3.2	0.004	0.64	0.0	0.04	16.34	0.00	2.054	8.01	1.57	1.5	98.5	0.0	0.59	0.98	0.78	0.89	3.36	15061	1830	10	0	6	0	0	logfile
✔	6M16	30038	2022-07-05	2020-02-24	2.83	2.92	—	2.9	0.010	1.03	0.0	0.07	10.43	0.01	1.146	5.24	0.36	7.5	92.4	0.1	-4.10	0.79	0.85	3.94	2.9	0.005	0.67	0.0	0.05	13.94	0.00	2.224	7.52	2.20	6.2	93.8	0.0	-1.04	1.18	0.80	0.87	3.10	23433	2895	18	0	60	0	0	logfile
✔	6YTK	10917	2022-07-07	2020-04-24	4.07	3.60	4.00	3.9	0.003	0.58	0.0	0.04	13.76	0.00	1.844	8.02	0.00	2.3	97.7	0.0	-0.29	0.65	0.81	—	3.9	0.003	0.58	0.0	0.04	13.82	0.00	2.248	8.78	0.00	2.7	97.3	0.0	2.59	0.73	0.65	0.81	—	41620	5340	20	0	0	0	0	logfile

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