Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6YS8	10893	2021-12-01	2020-04-21	3.9	4.00	3.55	3.9	0.006	1.03	1.0	0.08	15.75	0.02	1.522	10.61	1.70	6.4	91.4	2.2	-3.81	0.65	0.83	1.77	3.9	0.005	0.93	0.0	0.05	17.11	0.00	2.095	16.40	0.85	4.7	94.2	1.1	0.64	0.71	0.66	0.82	0.63	5624	737	7	0	0	0	0	logfile
✔	7JPT	22422	2021-12-02	2020-08-09	3.2	3.54	3.50	3.5	0.002	0.53	0.0	0.04	13.86	0.00	2.267	8.51	3.48	6.8	93.2	0.1	-4.02	0.66	0.71	2.64	3.5	0.003	0.68	0.0	0.04	15.48	0.00	2.182	12.51	0.10	8.4	91.6	0.0	-2.25	0.56	0.73	0.77	2.68	10220	1327	3	0	5	0	0	logfile
✔	7CZB	30508	2021-12-01	2020-09-07	3.8	4.14	—	4.1	0.005	1.12	0.0	0.06	15.72	0.01	2.360	4.78	0.47	12.5	87.5	0.0	-4.95	0.56	0.80	2.30	4.1	0.003	0.91	0.0	0.05	17.03	0.00	2.245	10.91	0.94	10.8	89.2	0.0	-1.60	1.39	0.57	0.79	1.78	6304	776	4	0	0	0	0	logfile
✔	7NRV	12551	2021-12-01	2021-03-04	3.0	3.20	2.72	3.2	0.007	1.15	0.0	0.07	12.81	0.03	2.385	3.52	0.00	6.0	94.0	0.0	-3.05	0.48	0.83	3.35	3.2	0.007	0.82	0.0	0.05	16.13	0.00	2.216	7.96	1.34	4.4	95.6	0.0	-2.80	0.55	0.41	0.83	3.45	5870	770	10	0	0	0	0	logfile
✔	7KY7	23070	2021-12-02	2020-12-07	3.08	3.38	—	3.3	0.004	0.69	0.0	0.05	15.18	0.00	1.705	14.99	1.01	7.0	92.9	0.1	-3.55	0.70	0.81	2.28	3.3	0.003	0.60	0.0	0.04	16.39	0.00	1.968	11.40	0.18	6.3	93.7	0.0	-1.18	1.11	0.69	0.82	2.30	10294	1247	8	0	17	0	0	logfile
✔	6YKR	10830	2021-12-02	2020-04-06	3.0	3.10	2.86	3.1	0.004	0.84	0.0	0.05	9.41	0.01	2.314	2.28	0.00	2.6	97.4	0.0	-6.35	0.66	0.84	5.11	3.1	0.003	0.67	0.0	0.04	16.26	0.00	2.265	7.76	0.93	2.4	97.6	0.0	1.12	0.80	0.69	0.88	3.46	10189	1326	9	0	0	6	0	logfile
✔	7DHi	30681	2021-12-01	2020-11-15	3.26	3.41	—	3.3	0.004	0.76	0.0	0.05	14.45	0.01	2.298	4.37	0.13	5.6	94.4	0.0	-5.36	0.77	0.84	3.51	3.4	0.002	0.61	0.0	0.04	16.25	0.00	2.188	8.41	0.13	4.9	95.1	0.0	-1.42	1.50	0.78	0.86	3.09	7799	1019	6	0	1	2	0	logfile
✔	6YKM	10828	2021-12-02	2020-04-06	3.1	3.19	2.97	3.2	0.009	1.07	0.0	0.06	11.10	0.01	2.256	4.12	0.00	3.0	97.0	0.0	-4.68	0.68	0.86	4.14	3.2	0.003	0.59	0.0	0.04	14.94	0.00	2.166	9.33	0.09	2.8	97.2	0.0	1.07	1.09	0.72	0.88	2.26	10434	1357	10	0	0	8	0	logfile
✔	7A92	11682	2021-12-01	2020-09-01	4.2	4.58	4.29	4.2	0.007	0.83	0.0	0.06	14.45	0.01	2.222	3.86	1.19	5.2	94.7	0.1	-2.44	0.77	0.64	—	4.2	0.003	0.60	0.0	0.04	13.40	0.00	2.079	6.92	0.00	3.1	96.9	0.0	-0.13	0.77	0.89	0.83	—	10040	1231	5	0	10	0	0	logfile
✔	6XJB	22205	2021-12-01	2020-06-23	3.8	4.06	—	3.9	0.002	0.56	0.0	0.04	13.15	0.00	2.165	9.70	0.00	8.6	91.4	0.0	-3.06	0.88	0.82	1.76	3.9	0.005	0.69	0.0	0.04	15.37	0.00	2.075	14.23	0.46	8.2	91.8	0.0	-1.64	1.83	0.88	0.86	2.01	10070	1277	1	0	0	0	0	logfile
✔	7BSW	30169	2021-12-01	2020-03-31	3.9	3.97	—	3.9	0.006	0.89	0.0	0.21	15.03	0.01	1.719	37.17	0.69	7.4	92.6	0.0	-5.22	0.66	0.79	2.01	3.9	0.003	0.66	0.0	0.04	16.89	0.00	2.192	9.43	0.29	4.4	95.6	0.0	-1.33	0.63	0.66	0.82	1.37	9329	1139	4	0	7	0	0	logfile
✔	7LCK	23276	2021-12-01	2021-01-11	3.24	3.84	3.15	3.6	0.007	1.42	4.0	0.24	15.83	0.01	2.160	7.64	1.16	6.7	93.3	0.0	-0.93	0.69	0.78	2.21	3.7	0.003	0.67	0.0	0.04	16.53	0.00	2.249	5.14	0.29	3.6	96.4	0.0	0.85	0.56	0.66	0.79	2.04	3258	390	1	0	1	11	0	logfile
✔	6Lo8	0935	2021-12-01	2020-01-04	3.83	3.89	—	3.6	0.005	0.87	0.0	0.05	14.88	0.01	2.242	5.11	0.46	3.7	96.1	0.2	-3.08	0.65	0.79	1.72	3.6	0.005	0.90	0.0	0.04	17.08	0.00	2.100	14.32	0.57	5.0	94.9	0.1	1.39	0.92	0.66	0.80	1.60	7972	997	10	0	0	0	0	logfile
✔	7KY8	23071	2021-12-02	2020-12-07	3.85	3.91	—	3.9	0.004	0.70	0.0	0.05	14.37	0.00	2.208	13.00	0.00	8.4	91.6	0.0	-1.28	0.70	0.84	2.33	3.9	0.003	0.59	0.0	0.04	16.01	0.00	2.193	10.72	0.45	7.5	92.5	0.0	-1.10	0.33	0.70	0.84	2.14	10520	1274	8	0	19	0	0	logfile
✔	7KJR	22898	2021-12-01	2020-10-26	2.08	2.52	2.15	2.4	0.007	0.89	0.0	0.05	16.44	0.00	2.254	7.60	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	2.4	0.003	0.52	0.0	0.04	15.79	0.00	2.101	9.36	0.74	2.1	97.9	0.0	1.36	0.39	0.67	0.87	4.69	3840	448	8	0	2	122	0	logfile
✔	7B5S	12050	2021-12-01	2020-12-07	3.6	3.59	3.45	3.6	0.006	0.78	0.0	0.04	15.48	0.01	1.997	11.05	0.24	8.7	91.3	0.0	-0.49	0.73	0.83	2.15	3.6	0.003	0.62	0.0	0.04	17.35	0.00	2.172	10.92	0.60	7.7	92.3	0.0	0.85	0.39	0.73	0.82	1.06	7671	931	5	0	5	0	0	logfile
✔	6ZD0	11172	2021-12-01	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	3.7	0.003	0.74	0.0	0.04	5.33	0.00	2.199	10.22	0.00	19.5	80.1	0.4	-4.32	2.53	0.59	0.58	—	7962	1611	6	0	0	0	0	logfile
✔	7JVA	22497	2021-12-01	2020-08-20	3.6	3.93	3.68	3.9	0.016	1.50	0.0	0.09	10.05	0.01	2.398	0.80	0.30	1.0	98.8	0.2	0.87	0.84	0.81	3.50	3.9	0.004	0.72	0.0	0.04	14.67	0.00	2.183	10.23	0.30	3.4	96.6	0.0	-0.06	0.68	0.85	0.82	2.50	3248	420	4	0	3	0	0	logfile
✔	7KAR	22781	2021-12-02	2020-10-01	4.0	4.56	4.12	4.3	0.003	0.59	0.0	0.04	12.73	0.00	2.224	7.84	0.00	2.8	97.2	0.0	-1.41	0.66	0.83	—	4.3	0.003	0.65	0.0	0.04	14.59	0.00	2.156	9.64	0.09	2.2	97.8	0.0	1.79	0.53	0.67	0.84	—	10435	1341	6	0	0	0	0	logfile
✔	7KAT	22783	2021-12-02	2020-10-01	4.4	5.04	4.41	4.5	0.002	0.51	0.0	0.04	11.32	0.00	2.185	6.85	0.00	1.9	98.1	0.0	-0.63	0.65	0.83	—	4.5	0.002	0.57	0.0	0.04	12.07	0.00	2.070	9.26	0.00	2.1	97.9	0.0	2.26	1.32	0.65	0.85	—	10431	1340	6	0	0	0	0	logfile

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