Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3JD0	6631	2021-08-09	2016-03-28	3.47	3.93	—	3.8	0.012	0.82	0.0	0.05	10.31	0.00	1.989	14.28	0.00	13.3	85.9	0.8	-5.89	0.85	0.82	3.48	3.8	0.003	0.71	0.0	0.04	14.53	0.00	2.158	13.51	0.20	5.1	94.9	0.0	0.77	2.55	0.86	0.86	2.01	23478	2976	12	0	6	0	0	logfile
✔	6UZ2	20950	2021-08-07	2019-11-14	4.2	4.39	—	4.3	0.009	1.13	0.0	0.05	13.78	0.01	2.197	29.50	2.00	15.5	84.3	0.2	-5.29	0.69	0.78	—	4.3	0.003	0.76	0.0	0.04	12.01	0.00	2.166	12.38	0.00	4.5	95.4	0.1	0.36	1.44	0.67	0.76	—	7392	1140	2	0	0	0	0	logfile
✔	6MHo	9115	2021-08-10	2018-09-18	3.4	3.50	3.41	3.5	0.005	0.72	0.0	0.04	7.36	0.00	2.108	2.84	0.00	2.7	97.3	0.0	-2.41	0.66	0.76	3.45	3.4	0.003	0.53	0.0	0.03	13.01	0.00	1.990	6.57	0.00	4.5	95.5	0.0	1.40	2.10	0.68	0.80	3.49	32224	2404	4	0	0	0	15184	logfile
✔	6oRo	20176	2021-08-09	2019-04-30	3.9	4.21	3.87	4.2	0.008	1.25	3.0	0.08	12.24	0.01	2.048	4.73	2.93	13.1	86.4	0.6	-5.30	0.62	0.84	2.16	4.2	0.004	0.76	0.0	0.05	15.43	0.00	2.215	9.13	0.58	12.8	87.0	0.2	-3.41	1.59	0.62	0.84	1.80	20085	2415	18	0	96	0	0	logfile
✔	5VT0	8732	2021-08-10	2017-05-15	3.78	3.90	—	3.8	0.007	1.10	0.0	0.06	10.86	0.01	2.110	6.67	0.57	7.3	92.6	0.1	-3.69	0.74	0.83	2.19	3.8	0.005	0.71	0.0	0.04	14.84	0.00	2.063	12.71	0.38	7.5	92.5	0.1	-0.47	1.56	0.75	0.84	1.60	31215	3669	8	112	3	0	0	logfile
✔	5U8T	8519	2021-08-11	2016-12-15	4.9	5.42	—	5.0	0.007	1.55	0.0	0.06	15.84	0.01	1.737	39.65	8.25	10.1	88.9	1.0	-4.31	0.87	0.80	—	4.9	0.003	0.86	0.0	0.04	14.17	0.00	2.105	23.14	0.04	8.7	90.3	1.0	-0.99	0.98	0.87	0.81	—	40788	5089	15	14	3	0	0	logfile
✔	6NY3	8980	2021-08-08	2019-02-10	3.7	4.08	—	4.0	0.009	1.13	0.0	0.06	19.98	0.01	2.251	4.71	0.33	16.9	82.5	0.6	-5.84	0.76	0.84	1.41	4.0	0.003	0.64	0.0	0.03	19.85	0.00	2.137	10.07	0.49	14.7	85.2	0.1	-1.73	1.02	0.70	0.80	0.74	10214	794	4	164	121	0	0	logfile
✔	3JBR	6475	2021-08-08	2015-09-29	4.2	4.39	—	4.2	0.008	1.30	0.0	0.06	8.64	0.00	1.419	18.81	0.37	8.1	84.8	7.0	-3.43	0.66	0.70	—	4.2	0.003	0.72	0.0	0.04	10.96	0.00	2.138	11.09	0.18	10.1	87.8	2.0	-0.44	2.07	0.66	0.70	—	16467	2148	6	0	385	0	0	logfile
✔	5Z9W	6903	2021-08-08	2018-02-05	3.6	3.84	—	3.7	0.005	0.80	0.0	0.05	11.69	0.01	1.979	1.80	0.00	7.0	93.0	0.0	-2.40	0.61	0.65	0.45	3.7	0.006	0.73	0.0	0.04	16.21	0.00	2.075	6.91	0.28	5.2	94.8	0.0	0.89	2.19	0.70	0.87	1.64	162027	19788	102	306	0	0	0	logfile
✔	3JCo	6574	2021-08-13	2016-01-06	4.8	5.75	—	4.7	0.012	1.35	4.0	0.06	10.71	0.01	1.268	93.31	0.41	13.5	85.0	1.5	-5.20	0.87	0.76	—	4.7	0.003	0.79	0.0	0.04	12.13	0.00	1.993	29.83	0.01	7.1	92.6	0.3	-1.13	3.13	0.90	0.83	—	104317	13329	47	0	0	0	0	logfile
✔	3JC7	6536	2021-08-11	2015-11-24	4.8	5.23	—	4.8	0.009	1.58	7.0	0.07	12.16	0.01	0.163	42.06	0.45	8.5	90.1	1.3	-4.10	0.75	0.53	—	4.8	0.003	0.94	0.0	0.05	12.96	0.00	2.002	22.69	0.00	9.2	90.0	0.8	-1.46	2.64	0.84	0.73	—	40298	5075	12	0	1	0	0	logfile
✔	5U0A	8478	2021-08-10	2016-11-23	3.3	3.41	—	3.4	0.012	1.37	1.0	0.08	16.04	0.01	1.667	28.43	5.48	4.6	94.8	0.6	-2.78	0.65	0.74	1.61	3.4	0.008	0.75	1.0	0.04	17.86	0.00	2.098	12.14	0.60	3.2	96.7	0.1	0.47	1.94	0.72	0.84	1.82	28923	3329	14	144	0	0	0	logfile
✔	5oFo	3776	2021-08-10	2017-07-11	4.6	4.87	4.51	4.6	0.009	1.24	0.0	0.06	12.52	0.01	2.219	14.12	0.92	5.4	94.4	0.2	-3.79	0.70	0.58	—	4.6	0.003	0.70	0.0	0.04	13.44	0.00	2.081	18.08	0.00	3.8	96.2	0.0	0.15	3.21	0.86	0.83	—	32993	4116	12	0	11	0	0	logfile
✔	6oAX	20004	2021-08-09	2019-03-18	2.9	3.19	—	3.2	0.012	1.18	0.0	0.07	16.14	0.01	1.807	12.62	0.93	7.7	91.9	0.3	-5.39	0.67	0.77	3.15	3.2	0.003	0.69	0.0	0.04	18.20	0.00	2.033	13.05	2.02	4.6	95.4	0.0	-0.99	1.24	0.65	0.78	2.46	27871	3474	13	0	38	0	0	logfile
✔	6o1D	0586	2021-08-08	2019-02-19	3.395	3.57	—	3.5	0.010	0.95	1.0	0.05	28.08	0.01	2.317	2.17	0.00	3.4	96.6	0.0	-4.72	0.79	0.87	4.13	3.5	0.003	0.57	0.0	0.03	27.92	0.00	2.219	7.40	0.16	2.1	97.9	0.0	0.63	0.54	0.80	0.88	2.70	11982	761	10	290	0	0	0	logfile
✔	6VAL	21142	2021-08-09	2019-12-17	3.87	4.25	—	4.2	0.005	0.74	0.0	0.04	14.40	0.00	2.052	9.20	1.02	6.0	94.0	0.0	-3.34	0.66	0.73	2.18	4.2	0.003	0.66	0.0	0.04	16.94	0.00	2.185	5.64	0.93	2.5	97.5	0.0	1.57	2.46	0.68	0.79	1.69	21615	2827	11	0	0	0	0	logfile
✔	6D83	7453	2021-08-08	2018-04-25	4.27	4.38	—	4.3	0.005	0.92	0.0	0.05	11.34	0.01	1.904	6.05	0.05	5.0	94.9	0.0	-4.30	0.80	0.76	—	4.3	0.004	0.75	0.0	0.05	14.01	0.00	1.966	17.36	0.00	4.8	95.2	0.0	-0.53	1.12	0.81	0.78	—	16588	2063	10	0	4	0	0	logfile
✔	5VCA	8659	2021-08-08	2017-03-31	4.8	6.04	—	5.9	0.021	2.65	50.0	0.15	5.91	0.01	1.097	1.93	0.00	6.9	90.0	3.1	-4.41	0.73	0.70	—	5.9	0.003	0.67	0.0	0.04	5.02	0.00	2.213	4.98	0.00	10.0	89.9	0.2	0.31	2.90	0.74	0.66	—	16080	3264	6	0	0	0	0	logfile
✔	6BGi	7095	2021-08-07	2017-10-28	3.8	4.07	3.58	4.0	0.008	1.00	0.0	0.05	8.91	0.01	2.002	48.25	0.00	16.1	83.9	0.0	-5.29	0.47	0.64	0.86	4.0	0.013	1.44	1.0	0.05	15.08	0.00	2.017	23.67	0.92	10.0	90.0	0.0	-1.43	1.17	0.48	0.65	1.38	7774	1020	4	0	4	0	0	logfile
✔	6oUA	20200	2021-08-07	2019-05-04	4.18	4.32	—	4.3	0.008	1.37	1.0	0.07	13.97	0.01	2.294	7.03	2.35	17.4	82.3	0.3	-5.89	0.72	0.79	—	4.3	0.003	0.83	0.0	0.05	14.62	0.00	2.124	10.64	0.00	11.6	88.4	0.0	-1.90	1.91	0.72	0.77	—	5208	637	3	0	0	0	0	logfile

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