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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7oH4 | 12893 | 2023-08-12 | 2021-05-09 | 3.0 | 3.58 | 3.12 | 3.4 | 0.003 | 0.73 | 0.0 | 0.04 | 10.95 | 0.00 | 2.021 | 6.46 | 1.36 | 4.0 | 96.0 | 0.0 | -3.11 | 0.64 | 0.70 | 2.09 | 3.5 | 0.002 | 0.59 | 0.0 | 0.04 | 13.67 | 0.00 | 2.024 | 7.85 | 2.23 | 2.7 | 97.3 | 0.0 | -0.57 | 1.16 | 0.65 | 0.73 | 1.69 | 11535 | 1414 | 8 | 0 | 11 | 3 | 0 | logfile |
✔ | 7MiD | 23847 | 2023-08-11 | 2021-04-16 | 3.56 | 4.10 | — | 3.9 | 0.010 | 1.02 | 0.0 | 0.06 | 20.24 | 0.01 | 0.918 | 14.61 | 5.73 | 8.6 | 91.3 | 0.1 | -1.30 | 0.76 | 0.66 | 0.22 | 4.0 | 0.003 | 0.72 | 0.0 | 0.04 | 20.05 | 0.00 | 2.148 | 11.09 | 0.11 | 5.9 | 94.1 | 0.0 | 0.00 | 1.89 | 0.81 | 0.81 | 0.91 | 9789 | 1080 | 11 | 57 | 6 | 0 | 0 | logfile |
✔ | 7Y82 | 33678 | 2023-08-12 | 2022-06-22 | 2.83 | 2.38 | 2.88 | 3.0 | 0.003 | 0.57 | 0.0 | 0.04 | 18.57 | 0.00 | 1.887 | 16.18 | 4.59 | 1.8 | 98.2 | 0.0 | 0.77 | 0.77 | 0.81 | 2.77 | 3.0 | 0.003 | 0.56 | 0.0 | 0.04 | 18.86 | 0.00 | 1.907 | 15.51 | 4.68 | 2.2 | 97.8 | 0.0 | 0.90 | 0.27 | 0.70 | 0.79 | 2.77 | 12278 | 1341 | 4 | 66 | 5 | 0 | 0 | logfile |
✔ | 6Wi1 | 21682 | 2023-08-17 | 2020-04-08 | 3.62 | 4.11 | — | 3.9 | 0.007 | 0.84 | 0.0 | 0.10 | 13.82 | 0.01 | 2.127 | 13.72 | 0.70 | 14.5 | 85.1 | 0.4 | -4.55 | 0.75 | 0.75 | 1.81 | 3.9 | 0.003 | 0.75 | 0.0 | 0.04 | 15.11 | 0.00 | 2.054 | 10.38 | 0.26 | 9.8 | 90.0 | 0.2 | -1.28 | 0.51 | 0.77 | 0.81 | 1.34 | 23366 | 3182 | 12 | 0 | 16 | 0 | 0 | logfile |
✔ | 8A9B | 15275 | 2023-08-09 | 2022-06-28 | 4.0 | 4.28 | 3.95 | 4.1 | 0.004 | 0.88 | 0.0 | 0.05 | 14.89 | 0.00 | 2.113 | 20.52 | 0.00 | 14.8 | 84.2 | 1.0 | -3.17 | 0.67 | 0.58 | — | 4.1 | 0.004 | 0.77 | 0.0 | 0.05 | 17.05 | 0.00 | 2.139 | 20.83 | 0.43 | 14.8 | 84.4 | 0.7 | -2.95 | 0.53 | 0.71 | 0.64 | — | 6386 | 809 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N0N | 24110 | 2023-08-16 | 2021-05-25 | 4.15 | 4.37 | — | 4.2 | 0.006 | 1.01 | 0.0 | 0.06 | 14.98 | 0.01 | 2.243 | 4.69 | 0.38 | 3.6 | 96.4 | 0.0 | -2.21 | 0.68 | 0.80 | — | 4.2 | 0.003 | 0.64 | 0.0 | 0.04 | 15.20 | 0.00 | 2.202 | 9.31 | 0.00 | 3.3 | 96.7 | 0.0 | 0.66 | 1.12 | 0.69 | 0.80 | — | 19632 | 2468 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K48 | 22661 | 2023-08-10 | 2020-09-15 | 3.6 | 4.15 | 4.07 | 4.1 | 0.010 | 1.23 | 0.0 | 0.06 | 17.88 | 0.01 | 2.233 | 5.29 | 3.40 | 7.4 | 92.6 | 0.0 | -3.52 | 0.48 | 0.75 | 1.45 | 4.1 | 0.004 | 0.92 | 0.0 | 0.04 | 18.57 | 0.00 | 2.049 | 20.13 | 0.21 | 5.8 | 94.2 | 0.0 | -0.19 | 1.95 | 0.47 | 0.74 | 1.45 | 8480 | 1048 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FB3 | 31513 | 2023-08-17 | 2021-07-08 | 3.1 | 3.73 | — | 3.7 | 0.003 | 0.65 | 0.0 | 0.04 | 14.25 | 0.00 | 2.114 | 9.15 | 0.23 | 8.2 | 91.8 | 0.0 | -4.11 | 0.74 | 0.81 | 2.06 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 15.86 | 0.00 | 2.103 | 8.31 | 0.12 | 6.2 | 93.8 | 0.0 | -1.30 | 1.98 | 0.73 | 0.81 | 1.95 | 22920 | 2936 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DTY | 30860 | 2023-08-11 | 2021-01-06 | 2.98 | 3.67 | — | 3.4 | 0.004 | 0.78 | 0.0 | 0.06 | 8.24 | 0.01 | 2.249 | 4.31 | 0.00 | 1.8 | 98.2 | 0.0 | -1.30 | 0.66 | 0.78 | 2.56 | 3.4 | 0.003 | 0.67 | 0.0 | 0.04 | 14.33 | 0.00 | 2.173 | 11.08 | 2.23 | 2.7 | 97.3 | 0.0 | 1.18 | 1.41 | 0.68 | 0.82 | 2.36 | 9407 | 1156 | 7 | 0 | 6 | 0 | 0 | logfile |
✔ | 7B5D | 12026 | 2023-08-12 | 2020-12-03 | 3.3 | 3.47 | 3.28 | 3.5 | 0.005 | 0.84 | 0.0 | 0.05 | 15.10 | 0.01 | 2.225 | 4.67 | 0.96 | 7.2 | 92.8 | 0.0 | -3.54 | 0.68 | 0.80 | 2.47 | 3.5 | 0.004 | 0.65 | 0.0 | 0.04 | 16.18 | 0.00 | 2.209 | 9.39 | 0.32 | 6.4 | 93.6 | 0.0 | -0.10 | 1.51 | 0.68 | 0.84 | 2.43 | 11462 | 1402 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oH7 | 12896 | 2023-08-12 | 2021-05-09 | 3.8 | 4.09 | 3.79 | 3.9 | 0.004 | 0.83 | 0.0 | 0.04 | 11.67 | 0.00 | 2.086 | 7.11 | 1.20 | 4.7 | 95.3 | 0.0 | -3.01 | 0.64 | 0.69 | 1.65 | 4.0 | 0.004 | 0.75 | 0.0 | 0.04 | 14.51 | 0.00 | 1.924 | 15.86 | 0.48 | 4.5 | 95.5 | 0.0 | -1.15 | 1.68 | 0.65 | 0.73 | 1.40 | 11552 | 1414 | 6 | 0 | 11 | 3 | 0 | logfile |
✔ | 6NY1 | 8994 | 2023-08-11 | 2019-02-10 | 4.2 | 4.56 | — | 4.3 | 0.007 | 1.11 | 0.0 | 0.06 | 21.20 | 0.01 | 2.099 | 9.52 | 0.33 | 18.6 | 81.0 | 0.4 | -4.84 | 0.80 | 0.80 | — | 4.4 | 0.003 | 0.72 | 0.0 | 0.04 | 20.36 | 0.00 | 2.150 | 15.20 | 0.00 | 16.3 | 83.6 | 0.1 | -2.23 | 0.59 | 0.79 | 0.78 | — | 9911 | 783 | 4 | 154 | 121 | 0 | 0 | logfile |
✔ | 6NY3 | 8980 | 2023-08-11 | 2019-02-10 | 3.7 | 4.08 | — | 4.0 | 0.009 | 1.13 | 0.0 | 0.06 | 19.98 | 0.01 | 2.251 | 4.71 | 0.33 | 16.9 | 82.5 | 0.6 | -5.84 | 0.76 | 0.84 | 1.41 | 4.0 | 0.003 | 0.66 | 0.0 | 0.04 | 19.90 | 0.00 | 2.137 | 9.68 | 0.66 | 15.7 | 84.1 | 0.1 | -1.78 | 1.01 | 0.66 | 0.77 | 0.74 | 10214 | 794 | 4 | 164 | 121 | 0 | 0 | logfile |
✔ | 7FFQ | 31571 | 2023-08-18 | 2021-07-23 | 3.5 | 3.66 | — | 3.6 | 0.007 | 0.93 | 0.0 | 0.06 | 9.31 | 0.01 | 2.267 | 4.48 | 0.18 | 6.5 | 93.5 | 0.1 | -3.45 | 0.48 | 0.76 | 2.43 | 3.6 | 0.003 | 0.68 | 0.0 | 0.04 | 13.97 | 0.00 | 2.131 | 10.16 | 0.33 | 5.1 | 94.8 | 0.1 | -0.87 | 0.99 | 0.50 | 0.83 | 2.64 | 24808 | 3208 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 5U1D | 8482 | 2023-08-10 | 2016-11-28 | 3.97 | 4.06 | — | 4.3 | 0.007 | 1.17 | 0.0 | 0.05 | 12.05 | 0.00 | 2.452 | 0.07 | 0.84 | 5.7 | 94.1 | 0.2 | -2.16 | 0.36 | 0.48 | 1.30 | 4.1 | 0.004 | 0.78 | 0.0 | 0.04 | 15.89 | 0.00 | 2.058 | 14.10 | 0.51 | 4.7 | 95.2 | 0.1 | 0.93 | 1.07 | 0.52 | 0.75 | 1.63 | 7815 | 1168 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XMG | 33296 | 2023-08-12 | 2022-04-25 | 3.09 | 3.36 | 3.11 | 3.4 | 0.007 | 0.84 | 1.0 | 0.13 | 16.90 | 0.01 | 2.017 | 20.33 | 4.46 | 7.3 | 92.4 | 0.3 | -2.84 | 0.50 | 0.67 | 1.81 | 3.4 | 0.003 | 0.69 | 0.0 | 0.04 | 17.61 | 0.00 | 2.069 | 12.15 | 0.31 | 5.8 | 94.2 | 0.0 | -0.35 | 1.18 | 0.55 | 0.76 | 1.63 | 11692 | 1431 | 7 | 0 | 10 | 0 | 0 | logfile |
✔ | 6H5i | 0140 | 2023-08-09 | 2018-07-24 | 3.9 | 3.87 | — | 23.0 | 0.006 | 0.81 | 0.0 | 0.05 | 10.47 | 0.01 | 2.196 | 2.64 | 0.17 | 4.3 | 95.7 | 0.0 | -1.74 | 0.29 | 0.06 | 0.15 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 15.36 | 0.00 | 2.097 | 14.22 | 0.32 | 4.1 | 95.9 | 0.0 | 1.46 | 1.26 | 0.37 | 0.24 | 0.27 | 43900 | 5392 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EJ0 | 31147 | 2023-08-10 | 2021-04-01 | 3.2 | 3.48 | — | 4.0 | 0.009 | 1.12 | 7.0 | 0.08 | 13.71 | 0.01 | 1.736 | 21.36 | 0.43 | 6.5 | 93.5 | 0.0 | -0.98 | 0.57 | 0.80 | 2.10 | 4.0 | 0.004 | 0.76 | 0.0 | 0.05 | 16.30 | 0.00 | 2.133 | 14.22 | 0.75 | 7.3 | 92.7 | 0.0 | -0.73 | 0.62 | 0.58 | 0.83 | 2.10 | 8600 | 1099 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7V96 | 31810 | 2023-08-17 | 2021-08-24 | 3.92 | 4.00 | 3.84 | 4.0 | 0.011 | 1.59 | 35.0 | 0.11 | 30.67 | 0.01 | 1.891 | 6.46 | 15.66 | 4.7 | 94.5 | 0.8 | -1.38 | 0.71 | 0.74 | 1.81 | 4.0 | 0.005 | 0.66 | 0.0 | 0.04 | 28.95 | 0.00 | 2.187 | 10.97 | 0.53 | 5.6 | 94.2 | 0.2 | -1.06 | 1.19 | 0.76 | 0.82 | 1.31 | 23968 | 1593 | 18 | 550 | 0 | 0 | 0 | logfile |
✔ | 6ND0 | 0439 | 2023-08-17 | 2018-12-13 | 3.5 | 3.65 | — | 3.6 | 0.008 | 0.94 | 0.0 | 0.06 | 10.80 | 0.01 | 2.178 | 5.06 | 0.43 | 7.8 | 92.0 | 0.2 | -4.62 | 0.60 | 0.75 | 3.00 | 3.6 | 0.003 | 0.67 | 0.0 | 0.04 | 14.64 | 0.00 | 2.110 | 9.60 | 0.27 | 6.0 | 93.9 | 0.1 | -1.29 | 0.83 | 0.67 | 0.80 | 2.26 | 22964 | 2908 | 4 | 0 | 0 | 0 | 0 | logfile |