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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5K7L | 8215 | 2022-12-16 | 2016-05-26 | 3.78 | 6.86 | — | 3.4 | 0.008 | 1.37 | 25.0 | 0.07 | 13.26 | 0.00 | 2.314 | 7.95 | 0.35 | 7.3 | 92.6 | 0.1 | -0.20 | 0.69 | 0.55 | 1.02 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 13.82 | 0.00 | 2.163 | 9.16 | 0.00 | 3.5 | 96.5 | 0.0 | 1.54 | 0.60 | 0.70 | 0.68 | 0.78 | 30870 | 4215 | 15 | 0 | 10 | 0 | 0 | logfile |
✔ | 4V1A | 2787 | 2022-12-16 | 2014-09-25 | 3.4 | 3.43 | — | 3.4 | 0.009 | 1.29 | 0.0 | 0.05 | 13.81 | 0.01 | 2.067 | 12.20 | 6.03 | 4.6 | 95.3 | 0.1 | -2.62 | 0.37 | 0.78 | 1.69 | 3.4 | 0.003 | 0.69 | 0.0 | 0.04 | 16.83 | 0.00 | 2.076 | 10.41 | 0.15 | 4.3 | 95.6 | 0.1 | 0.54 | 1.91 | 0.38 | 0.78 | 1.67 | 31917 | 3843 | 24 | 0 | 94 | 0 | 0 | logfile |
✔ | 6RLB | 4918 | 2022-12-14 | 2019-05-01 | 4.5 | 4.85 | 4.49 | 4.3 | 0.007 | 0.95 | 0.0 | 0.06 | 4.70 | 0.00 | 2.082 | 0.71 | 0.00 | 4.0 | 95.9 | 0.0 | -1.08 | 0.80 | 0.63 | — | 4.2 | 0.003 | 0.72 | 0.0 | 0.04 | 5.19 | 0.00 | 2.243 | 3.44 | 0.00 | 11.3 | 88.6 | 0.0 | -0.76 | 1.85 | 0.86 | 0.66 | — | 20407 | 4122 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N38 | 9341 | 2022-12-15 | 2018-11-14 | 3.7 | 3.82 | — | 3.8 | 0.013 | 1.29 | 0.0 | 0.08 | 10.00 | 0.01 | 2.216 | 1.46 | 0.31 | 2.7 | 97.2 | 0.1 | 0.10 | 0.78 | 0.79 | 2.54 | 3.7 | 0.003 | 0.65 | 0.0 | 0.04 | 14.34 | 0.00 | 2.182 | 6.61 | 0.16 | 2.3 | 97.7 | 0.0 | 0.92 | 0.83 | 0.80 | 0.82 | 2.17 | 24456 | 3098 | 11 | 0 | 39 | 0 | 0 | logfile |
✔ | 6PSY | 20468 | 2022-12-12 | 2019-07-14 | 2.8 | 2.96 | — | 3.0 | 0.007 | 1.08 | 0.0 | 0.06 | 11.32 | 0.01 | 2.256 | 8.88 | 0.40 | 8.3 | 91.7 | 0.0 | -4.87 | 0.59 | 0.74 | 3.67 | 3.0 | 0.004 | 0.68 | 0.0 | 0.04 | 16.61 | 0.00 | 2.184 | 14.29 | 2.85 | 7.4 | 92.6 | 0.0 | -1.24 | 1.26 | 0.64 | 0.80 | 3.07 | 11540 | 1429 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6SST | 10305 | 2022-12-11 | 2019-09-09 | 3.4 | 3.46 | — | 3.4 | 0.009 | 0.94 | 0.0 | 0.07 | 16.79 | 0.00 | 2.430 | 5.73 | 2.13 | 10.1 | 89.9 | 0.0 | -4.47 | 0.56 | 0.80 | 6.33 | 3.4 | 0.005 | 0.69 | 0.0 | 0.05 | 15.22 | 0.00 | 2.342 | 10.76 | 0.21 | 14.6 | 85.4 | 0.0 | -4.82 | 0.49 | 0.59 | 0.84 | 5.27 | 4900 | 730 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N30 | 9335 | 2022-12-19 | 2018-11-14 | 3.2 | 3.45 | 3.17 | 3.4 | 0.011 | 1.27 | 10.0 | 0.07 | 10.68 | 0.01 | 0.590 | 11.93 | 0.78 | 4.1 | 95.8 | 0.2 | -2.69 | 0.63 | 0.73 | 4.10 | 3.4 | 0.003 | 0.71 | 0.0 | 0.05 | 13.87 | 0.00 | 1.930 | 11.42 | 0.35 | 3.9 | 96.1 | 0.0 | 0.56 | 1.19 | 0.70 | 0.85 | 3.10 | 34851 | 4694 | 27 | 0 | 26 | 0 | 0 | logfile |
✔ | 6KS8 | 0760 | 2022-12-12 | 2019-08-23 | 4.69 | 4.76 | — | 4.6 | 0.001 | 0.39 | 0.0 | 0.04 | 7.12 | 0.00 | 2.228 | 5.95 | 0.01 | 4.4 | 95.5 | 0.0 | -3.61 | 0.77 | 0.67 | — | 4.6 | 0.004 | 0.80 | 1.0 | 0.05 | 11.72 | 0.00 | 2.042 | 24.03 | 0.00 | 4.6 | 95.3 | 0.0 | -0.71 | 1.94 | 0.82 | 0.74 | — | 61943 | 8120 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6iG9 | 9664 | 2022-12-13 | 2018-09-25 | 4.6 | 5.44 | 4.27 | 4.3 | 0.007 | 1.07 | 0.0 | 0.05 | 9.51 | 0.01 | 2.299 | 9.69 | 0.73 | 10.2 | 89.7 | 0.2 | -3.99 | 0.69 | 0.65 | — | 4.2 | 0.002 | 0.65 | 0.0 | 0.04 | 4.80 | 0.00 | 2.253 | 1.55 | 0.00 | 8.0 | 92.0 | 0.0 | 1.51 | 1.56 | 0.84 | 0.79 | — | 17122 | 3386 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MHW | 9120 | 2022-12-18 | 2018-09-18 | 4.0 | 4.10 | 3.97 | 4.0 | 0.004 | 0.62 | 0.0 | 0.13 | 7.02 | 0.00 | 1.933 | 7.04 | 0.00 | 3.4 | 96.6 | 0.0 | -2.09 | 0.79 | 0.77 | — | 4.0 | 0.003 | 0.67 | 0.0 | 0.12 | 12.85 | 0.00 | 1.905 | 10.25 | 0.25 | 5.4 | 94.6 | 0.0 | 1.46 | 1.49 | 0.79 | 0.79 | — | 34414 | 2452 | 4 | 0 | 0 | 0 | 16514 | logfile |
✔ | 6DJM | 7936 | 2022-12-12 | 2018-05-25 | 3.1 | 3.26 | — | 3.2 | 0.010 | 1.01 | 0.0 | 0.06 | 10.99 | 0.01 | 2.069 | 3.69 | 0.00 | 4.2 | 95.8 | 0.0 | -4.16 | 0.67 | 0.84 | 3.65 | 3.2 | 0.003 | 0.57 | 0.0 | 0.04 | 15.21 | 0.00 | 1.964 | 7.54 | 0.16 | 4.1 | 95.9 | 0.0 | -0.33 | 1.26 | 0.68 | 0.86 | 2.94 | 11768 | 1488 | 12 | 0 | 8 | 4 | 0 | logfile |
✔ | 5YW7 | 6847 | 2022-12-12 | 2017-11-29 | 4.4 | 4.45 | 4.13 | 4.3 | 0.004 | 0.71 | 1.0 | 0.05 | 13.01 | 0.01 | 2.246 | 14.19 | 6.49 | 4.3 | 95.7 | 0.0 | -2.58 | 0.70 | 0.79 | — | 4.3 | 0.003 | 0.71 | 0.0 | 0.04 | 13.20 | 0.00 | 2.213 | 13.09 | 0.00 | 3.6 | 96.4 | 0.0 | 0.59 | 1.48 | 0.71 | 0.80 | — | 8944 | 1140 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6K0B | 9900 | 2022-12-15 | 2019-05-05 | 4.3 | 4.49 | — | 4.2 | 0.003 | 0.78 | 0.0 | 0.04 | 14.21 | 0.01 | 2.011 | 5.73 | 0.66 | 6.1 | 93.9 | 0.0 | -3.67 | 0.84 | 0.69 | — | 4.2 | 0.003 | 0.67 | 0.0 | 0.04 | 15.17 | 0.00 | 2.093 | 21.43 | 0.00 | 7.3 | 92.6 | 0.1 | -0.56 | 1.78 | 0.88 | 0.79 | — | 25908 | 1376 | 16 | 682 | 2 | 0 | 0 | logfile |
✔ | 5A2Q | 3019 | 2022-12-15 | 2015-05-21 | 3.9 | 4.01 | — | 3.9 | 0.008 | 1.23 | 0.0 | 0.05 | 19.81 | 0.01 | 1.830 | 13.41 | 12.93 | 4.3 | 95.5 | 0.2 | -3.44 | 0.89 | 0.88 | 1.18 | 3.9 | 0.004 | 0.72 | 0.0 | 0.04 | 18.72 | 0.00 | 1.818 | 15.77 | 0.82 | 5.1 | 94.8 | 0.1 | -0.34 | 1.60 | 0.86 | 0.82 | 1.23 | 80749 | 4931 | 45 | 1922 | 115 | 144 | 0 | logfile |
✔ | 6DG8 | 7883 | 2022-12-13 | 2018-05-17 | 3.89 | 4.70 | — | 3.8 | 0.005 | 1.17 | 0.0 | 0.06 | 12.55 | 0.01 | 1.916 | 4.89 | 0.55 | 4.4 | 95.6 | 0.0 | -3.46 | 0.82 | 0.75 | 1.19 | 3.8 | 0.003 | 0.73 | 0.0 | 0.04 | 14.17 | 0.00 | 2.175 | 12.23 | 0.17 | 5.3 | 94.7 | 0.0 | -1.49 | 0.80 | 0.85 | 0.83 | 1.48 | 16715 | 1955 | 24 | 0 | 40 | 0 | 0 | logfile |
✔ | 6N3A | 9349 | 2022-12-11 | 2018-11-14 | 3.3 | 3.44 | — | 3.6 | 0.008 | 1.14 | 0.0 | 0.05 | 14.53 | 0.01 | 2.469 | 17.25 | 0.00 | 8.9 | 91.1 | 0.0 | -5.23 | 0.49 | 0.76 | 3.75 | 3.6 | 0.005 | 0.96 | 0.0 | 0.04 | 19.28 | 0.00 | 2.210 | 17.25 | 2.05 | 10.2 | 89.8 | 0.0 | -5.15 | 1.99 | 0.51 | 0.79 | 2.70 | 4310 | 600 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J0F | 9763 | 2022-12-14 | 2018-12-24 | 3.8 | 3.95 | — | 3.9 | 0.007 | 1.04 | 0.0 | 0.06 | 15.76 | 0.01 | 2.265 | 5.30 | 2.19 | 4.9 | 95.1 | 0.0 | -4.54 | 0.64 | 0.86 | 2.41 | 3.9 | 0.005 | 0.80 | 0.0 | 0.05 | 17.01 | 0.00 | 2.141 | 12.00 | 0.78 | 7.5 | 92.5 | 0.0 | -1.35 | 2.05 | 0.64 | 0.86 | 2.05 | 19314 | 2472 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MHV | 9119 | 2022-12-19 | 2018-09-18 | 3.5 | 3.64 | 3.43 | 3.6 | 0.006 | 0.85 | 4.0 | 0.13 | 7.65 | 0.00 | 1.624 | 6.49 | 0.00 | 4.1 | 95.9 | 0.0 | -1.96 | 0.75 | 0.80 | 3.89 | 3.6 | 0.003 | 0.65 | 0.0 | 0.12 | 13.50 | 0.00 | 1.948 | 6.18 | 0.06 | 3.3 | 96.7 | 0.0 | 1.94 | 1.85 | 0.76 | 0.82 | 3.89 | 35496 | 2452 | 4 | 0 | 0 | 0 | 17152 | logfile |
✔ | 5WRG | 6679 | 2022-12-13 | 2016-12-01 | 4.3 | 4.45 | — | 4.3 | 0.007 | 1.37 | 0.0 | 0.07 | 12.06 | 0.01 | 2.191 | 9.91 | 0.53 | 18.0 | 81.4 | 0.7 | -5.05 | 0.66 | 0.69 | — | 4.3 | 0.003 | 1.10 | 0.0 | 0.05 | 12.22 | 0.00 | 1.996 | 18.90 | 0.00 | 17.5 | 82.3 | 0.1 | -3.22 | 1.51 | 0.68 | 0.76 | — | 16317 | 2208 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PDT | 20309 | 2022-12-16 | 2019-06-19 | 3.8 | 3.95 | — | 3.9 | 0.022 | 2.06 | 0.0 | 0.21 | 11.05 | 0.01 | 1.771 | 1.30 | 0.00 | 1.9 | 97.7 | 0.4 | 0.40 | 0.73 | 0.73 | 1.74 | 3.9 | 0.005 | 0.94 | 0.0 | 0.04 | 14.91 | 0.00 | 1.722 | 11.32 | 0.23 | 6.9 | 93.1 | 0.0 | 0.42 | 2.53 | 0.76 | 0.79 | 1.58 | 31364 | 2000 | 8 | 0 | 12 | 0 | 15636 | logfile |