Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LRC	23494	2021-08-07	2021-02-16	2.97	4.17	2.92	3.5	0.006	0.48	0.0	0.04	7.93	0.01	1.795	5.33	0.30	0.8	99.2	0.0	3.49	0.72	0.74	3.03	3.5	0.003	0.57	0.0	0.04	11.46	0.00	1.860	9.18	1.20	0.8	99.2	0.0	3.75	1.20	0.77	0.86	3.00	6202	762	6	0	6	0	0	logfile
✔	7D4P	30575	2021-08-09	2020-09-24	2.7	3.03	2.86	3.0	0.017	1.34	0.0	0.17	13.97	0.01	2.269	4.62	0.67	1.2	98.8	0.0	2.42	0.58	0.76	3.11	3.0	0.002	0.51	0.0	0.03	15.73	0.00	2.268	5.55	0.84	0.8	99.2	0.0	2.69	1.61	0.63	0.81	2.71	22472	2676	8	0	28	0	0	logfile
✔	6WL0	21814	2021-08-08	2020-04-17	4.4	4.62	—	4.4	0.006	0.82	0.0	0.04	18.91	0.00	2.353	8.18	0.00	0.0	100.0	0.0	-5.48	0.79	0.88	—	4.4	0.004	0.96	0.0	0.04	15.02	0.00	2.153	21.40	0.00	0.9	99.1	0.0	0.24	1.68	0.79	0.86	—	11480	1476	41	0	0	0	0	logfile
✔	7D84	30612	2021-08-11	2020-10-07	3.7	4.34	3.76	4.2	0.009	0.90	0.0	0.05	15.25	0.01	2.271	6.09	7.78	2.1	97.9	0.0	-2.70	0.84	0.84	2.66	4.2	0.004	0.81	0.0	0.04	17.43	0.00	2.083	12.45	0.50	0.9	99.1	0.0	0.27	1.36	0.83	0.82	2.88	42704	5406	34	0	0	0	0	logfile
✔	7KoD	22972	2021-08-10	2020-11-08	1.655	2.30	—	1.9	0.001	0.35	0.0	0.03	8.49	0.00	2.288	0.78	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	1.9	0.004	0.50	0.0	0.03	13.81	0.00	1.878	1.88	0.11	0.9	99.1	0.0	5.24	0.59	0.87	0.93	8.04	68186	4128	48	0	0	1727	32643	logfile
✔	6XKJ	22219	2021-08-08	2020-06-26	3.54	3.39	—	3.4	0.009	0.83	0.0	0.05	14.92	0.00	2.246	12.68	0.00	2.4	97.6	0.0	0.54	0.62	0.85	1.81	3.4	0.003	0.70	0.0	0.04	18.78	0.00	2.072	11.55	0.73	0.9	99.1	0.0	1.18	1.13	0.61	0.85	1.48	11056	1360	16	0	0	0	0	logfile
✔	7D0i	30535	2021-08-09	2020-09-10	3.0	2.89	2.95	3.1	0.008	0.78	0.0	0.05	14.12	0.00	2.237	5.55	2.60	2.6	97.4	0.0	-2.14	0.69	0.81	2.98	3.0	0.003	0.62	0.0	0.04	16.52	0.00	2.149	7.04	2.86	0.9	99.1	0.0	1.30	1.88	0.69	0.83	2.93	22164	2544	12	0	12	0	0	logfile
✔	6UPH	20839	2021-08-08	2019-10-17	2.7	3.01	2.85	3.0	0.007	0.67	0.0	0.04	26.16	0.00	2.216	4.33	0.00	1.8	98.2	0.0	-5.67	0.70	0.87	4.13	3.0	0.003	0.58	0.0	0.03	27.46	0.00	2.124	4.48	1.29	1.0	99.0	0.0	1.41	0.36	0.69	0.87	2.35	10677	732	10	238	0	0	0	logfile
✔	6U95	20693	2021-08-26	2019-09-06	2.56	4.18	2.62	2.5	0.008	0.82	60.0	0.05	13.57	0.00	1.933	14.33	0.22	1.9	97.9	0.2	-2.81	0.70	0.85	5.00	2.5	0.003	0.51	0.0	0.04	14.21	0.00	2.190	4.45	0.84	1.0	99.0	0.0	-0.28	3.66	0.80	0.94	5.01	247500	31140	60	0	0	0	0	logfile
✔	6NHV	9374	2021-08-07	2018-12-24	3.5	3.46	3.54	3.5	0.011	1.12	0.0	0.05	10.00	0.01	2.125	7.06	0.21	1.8	98.2	0.0	-3.60	0.62	0.71	1.82	3.5	0.003	0.70	0.0	0.04	16.11	0.00	2.228	6.06	1.18	1.0	99.0	0.0	1.99	0.96	0.59	0.80	2.26	8948	1165	7	0	1	0	0	logfile
✔	6oVH	20212	2021-08-08	2019-05-07	2.6	2.81	2.71	2.8	0.013	1.04	0.0	0.04	17.48	0.02	1.203	1.15	4.55	1.0	99.0	0.0	-6.34	0.75	0.87	4.63	2.8	0.003	0.73	0.0	0.04	18.90	0.00	2.021	3.83	0.85	1.0	99.0	0.0	2.84	0.99	0.78	0.89	3.60	10895	1272	36	0	68	171	0	logfile
✔	6SD4	10148	2021-08-11	2019-07-26	2.8	3.00	2.71	2.9	0.010	0.78	0.0	0.04	12.27	0.00	2.235	7.10	0.75	9.7	89.7	0.7	-4.67	0.78	0.85	5.63	2.9	0.003	0.64	0.0	0.04	17.33	0.00	2.022	7.25	1.65	1.0	99.0	0.0	1.11	0.55	0.77	0.86	4.28	40562	5134	34	0	0	0	0	logfile
✔	6A7F	6993	2021-08-08	2018-07-03	3.4	3.51	—	3.4	0.014	1.17	0.0	0.06	11.20	0.01	2.271	4.26	0.00	0.0	100.0	0.0	-2.13	0.55	0.84	0.56	3.4	0.003	0.70	0.0	0.04	18.00	0.00	2.155	15.91	0.57	1.0	99.0	0.0	2.02	2.07	0.60	0.86	-0.06	10830	1410	30	0	0	0	0	logfile
✔	7o6E	12738	2021-08-10	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.49	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.004	0.49	0.0	0.03	18.22	0.01	2.202	3.30	0.69	1.0	99.0	0.0	4.35	0.28	0.88	0.89	5.30	35304	4248	48	0	0	1392	0	logfile
✔	6XSS	22305	2021-08-07	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.15	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.016	1.55	0.0	0.04	17.50	0.01	2.308	17.36	0.24	1.0	99.0	0.0	2.38	1.34	0.75	0.79	0.22	8048	1040	4	0	0	0	0	logfile
✔	7MBX	23749	2021-08-07	2021-04-01	1.95	2.56	1.94	2.4	0.014	1.16	1.0	0.22	12.85	0.01	2.287	2.16	0.45	1.5	98.5	0.0	-0.11	0.72	0.86	4.55	2.3	0.003	0.73	0.0	0.07	15.37	0.00	2.186	6.91	1.00	1.0	99.0	0.0	1.65	0.54	0.73	0.88	4.34	8433	1065	11	0	2	61	0	logfile
✔	6QFA	4542	2021-08-08	2019-01-09	2.49	2.59	2.43	2.6	0.005	0.75	0.0	0.06	10.73	0.01	1.973	5.30	0.00	1.8	98.2	0.0	-2.14	0.73	0.85	4.50	2.6	0.003	0.59	0.0	0.04	14.34	0.00	2.206	6.24	1.37	1.0	99.0	0.0	1.22	1.19	0.75	0.87	3.95	18755	2270	20	0	35	0	0	logfile
✔	6XYQ	10652	2021-08-07	2020-01-30	3.09	3.30	2.79	3.3	0.007	0.71	0.0	0.05	12.97	0.00	2.130	9.08	0.00	3.5	96.5	0.0	-4.52	0.46	0.84	3.97	3.3	0.003	0.53	0.0	0.05	15.50	0.00	2.254	7.11	0.20	1.0	99.0	0.0	-3.28	0.44	0.46	0.84	4.72	4955	725	10	0	0	0	0	logfile
✔	6RAH	4775	2021-08-08	2019-04-06	2.8	2.99	3.01	2.9	0.008	1.53	9.0	0.09	9.90	0.01	2.022	9.87	0.00	2.1	97.7	0.2	-2.51	0.72	0.81	2.84	2.9	0.012	1.20	1.0	0.04	15.07	0.00	2.001	10.46	0.76	1.1	98.8	0.1	0.87	0.68	0.76	0.85	2.42	10161	1277	7	0	4	4	0	logfile
✔	7D4Q	30576	2021-08-09	2020-09-24	2.74	2.99	2.80	3.0	0.016	1.49	0.0	0.17	13.65	0.01	2.254	6.25	0.67	1.4	98.6	0.0	2.70	0.47	0.71	3.84	3.0	0.003	0.60	0.0	0.04	15.87	0.00	2.219	6.43	1.30	1.1	98.9	0.0	2.29	0.48	0.69	0.87	3.81	22388	2672	8	0	24	0	0	logfile

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