Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XZC	10658	2023-04-22	2020-02-03	3.37	3.56	3.37	3.6	0.004	0.63	0.0	0.04	12.50	0.01	2.323	2.10	3.06	1.7	98.3	0.0	-1.92	0.66	0.74	0.86	3.6	0.002	0.54	0.0	0.03	15.13	0.00	2.208	5.54	0.22	0.5	99.5	0.0	5.22	1.10	0.72	0.84	0.90	13279	1694	7	0	0	0	0	logfile
✔	7KoG	22975	2023-04-24	2020-11-09	4.25	3.30	—	6.0	0.005	1.03	1.0	0.04	18.29	0.00	1.580	10.26	0.70	0.5	99.5	0.0	-6.22	0.69	0.62	—	4.1	0.003	0.78	0.0	0.04	16.94	0.00	2.101	12.44	0.00	0.6	99.4	0.0	2.86	1.99	0.74	0.74	—	17384	2154	2	0	0	0	0	logfile
✔	8EEP	28054	2023-04-20	2022-09-07	2.2	2.31	2.33	2.3	0.004	1.00	0.0	0.71	12.36	0.00	0.286	7.98	1.59	0.0	100.0	0.0	1.98	0.74	0.81	4.21	2.3	0.030	1.63	0.0	0.12	16.78	0.01	2.001	9.57	1.36	0.6	99.4	0.0	1.73	1.37	0.74	0.81	3.61	108060	13260	60	0	120	0	0	logfile
✔	8BC3	15961	2023-04-24	2022-10-14	2.1	2.00	2.14	2.2	0.014	2.07	0.0	0.11	17.99	0.02	2.310	1.34	11.95	3.3	96.7	0.0	-4.28	0.71	0.83	5.67	2.1	0.002	0.54	0.0	0.04	15.44	0.00	2.168	4.01	0.63	0.6	99.4	0.0	1.85	0.51	0.76	0.87	5.99	16880	2170	30	0	10	500	0	logfile
✔	7TiK	25912	2023-04-19	2022-01-13	2.4	2.38	—	2.0	0.007	0.49	0.0	0.04	16.31	0.00	2.218	7.94	0.00	4.6	95.4	0.0	1.31	0.77	0.80	1.31	2.0	0.003	0.50	0.0	0.04	16.49	0.00	2.245	8.91	1.01	0.6	99.4	0.0	5.53	0.94	0.78	0.80	1.16	2565	339	6	0	0	0	0	logfile
✔	6MRU	9213	2023-04-21	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.002	0.46	0.0	0.03	13.25	0.00	2.193	3.51	0.00	0.6	99.4	0.0	5.67	3.08	0.76	0.87	1.78	29107	3705	13	0	0	0	0	logfile
✔	7YQD	34024	2023-04-21	2022-08-06	3.4	3.67	3.38	3.7	0.012	1.46	7.0	0.10	13.65	0.00	2.335	4.80	7.63	0.5	99.5	0.0	6.20	0.79	0.85	0.96	3.7	0.003	0.59	0.0	0.04	16.42	0.00	2.244	8.14	1.51	0.6	99.4	0.0	4.52	0.70	0.77	0.84	0.91	10290	1330	7	0	0	0	0	logfile
✔	6MRT	9212	2023-04-19	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.49	0.0	0.03	15.38	0.00	2.211	3.09	1.33	0.6	99.4	0.0	5.41	3.08	0.73	0.87	2.47	26868	3420	12	0	0	0	0	logfile
✔	7P0Z	13153	2023-04-22	2021-07-01	2.43	2.02	2.41	2.2	0.016	0.94	0.0	0.06	14.02	0.01	2.141	7.29	0.00	4.3	95.7	0.0	1.90	0.83	0.86	2.91	2.3	0.002	0.49	0.0	0.03	18.12	0.00	2.239	4.38	1.64	0.7	99.3	0.0	5.47	0.55	0.84	0.87	2.18	12873	1652	7	0	0	0	0	logfile
✔	7BES	12158	2023-04-21	2020-12-24	2.85	2.95	2.86	2.9	0.013	1.03	0.0	0.05	10.01	0.00	2.236	7.96	0.85	0.3	99.7	0.0	0.37	0.73	0.82	3.32	2.9	0.004	0.58	0.0	0.04	15.51	0.00	2.073	10.07	2.01	0.7	99.3	0.0	0.46	1.16	0.73	0.84	3.14	9446	1234	12	6	4	0	0	logfile
✔	7SiP	25147	2023-04-20	2021-10-14	3.0	3.27	—	3.3	0.011	1.17	0.0	0.04	16.74	0.01	2.313	3.17	0.00	0.9	99.1	0.0	0.93	0.63	0.81	2.85	3.3	0.003	0.50	0.0	0.04	15.70	0.00	2.203	3.75	1.74	0.7	99.3	0.0	1.21	0.99	0.59	0.82	2.74	7560	892	12	0	36	20	0	logfile
✔	7ZCU	14633	2023-04-21	2022-03-28	2.7	2.42	2.63	2.6	0.013	2.78	0.0	0.04	17.08	0.01	2.218	3.71	0.00	1.8	98.2	0.0	1.48	0.65	0.81	3.95	2.6	0.006	1.54	0.0	0.04	19.09	0.00	2.117	8.45	1.27	0.8	99.2	0.0	3.01	0.79	0.68	0.86	2.42	10149	958	47	0	42	9	0	logfile
✔	7WiJ	32531	2023-04-22	2022-01-03	3.17	3.08	3.01	3.2	0.002	0.50	0.0	0.03	14.49	0.00	2.243	4.52	0.00	0.4	99.6	0.0	2.75	0.70	0.85	1.82	3.2	0.003	0.53	0.0	0.03	15.57	0.00	2.262	4.68	0.00	0.8	99.2	0.0	3.40	0.26	0.71	0.87	1.79	12396	1602	6	0	0	0	0	logfile
✔	6ZBG	11154	2023-04-25	2020-06-08	3.2	3.97	3.37	3.6	0.010	1.15	0.0	0.07	13.62	0.01	2.468	1.13	0.00	1.1	98.9	0.0	0.72	0.84	0.78	2.20	3.6	0.002	0.48	0.0	0.03	15.23	0.00	2.139	4.51	0.09	0.8	99.2	0.0	4.37	1.86	0.85	0.79	1.51	19534	1160	4	0	0	0	9902	logfile
✔	6L3V	0827	2023-04-25	2019-10-15	2.63	2.90	2.72	2.9	0.009	0.92	0.0	0.04	17.16	0.01	2.218	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	2.9	0.003	0.60	0.0	0.03	16.70	0.00	2.186	2.31	1.41	0.8	99.2	0.0	2.15	3.58	0.59	0.87	2.86	19416	1206	12	0	6	0	9528	logfile
✔	6oVH	20212	2023-04-21	2019-05-07	2.6	2.81	2.71	2.8	0.014	1.10	0.0	0.04	17.48	0.01	1.203	1.15	4.55	1.0	99.0	0.0	-6.34	0.75	0.87	4.63	2.8	0.003	0.75	0.0	0.04	18.69	0.00	2.055	2.87	0.38	0.8	99.2	0.0	2.63	0.98	0.77	0.89	3.77	10895	1272	36	0	68	171	0	logfile
✔	7PCH	13320	2023-04-21	2021-08-03	2.89	3.82	2.93	3.4	0.012	1.54	0.0	0.10	13.62	0.01	2.343	0.97	0.55	3.7	96.3	0.0	1.22	0.89	0.83	3.70	3.4	0.004	0.64	0.0	0.04	14.40	0.00	2.170	6.27	0.55	0.8	99.2	0.0	2.33	1.58	0.91	0.89	3.66	10798	1254	16	0	4	510	0	logfile
✔	7XNH	33315	2023-04-25	2022-04-28	3.1	2.98	2.73	2.9	0.006	1.12	0.0	0.05	13.57	0.01	2.144	6.68	0.61	0.6	99.4	0.0	-0.23	0.72	0.87	4.77	2.9	0.002	0.45	0.0	0.04	13.55	0.00	2.333	4.76	0.15	0.8	99.2	0.0	2.76	0.97	0.73	0.84	3.00	19224	2172	24	0	132	0	0	logfile
✔	7o6Q	12740	2023-04-20	2021-04-12	1.88	2.21	—	1.9	0.010	0.71	0.0	0.05	12.80	0.01	2.115	4.83	1.25	3.2	96.8	0.0	-1.61	0.88	0.85	7.59	1.9	0.002	0.47	0.0	0.04	14.51	0.00	2.189	4.70	1.63	0.8	99.2	0.0	3.42	0.36	0.90	0.90	6.06	7999	997	8	0	0	399	0	logfile
✔	7WKS	32568	2023-04-20	2022-01-11	3.0	2.57	—	3.0	0.002	0.54	0.0	0.04	13.07	0.00	2.162	7.24	0.00	1.1	98.9	0.0	1.77	0.60	0.81	2.12	3.0	0.003	0.55	0.0	0.04	16.04	0.00	2.218	8.33	0.78	0.8	99.2	0.0	1.85	0.91	0.59	0.83	1.38	5874	754	2	0	0	0	0	logfile

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