Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XSL	33426	2022-12-12	2022-05-14	3.84	4.65	3.83	3.7	0.002	0.47	0.0	0.02	16.20	0.00	1.935	8.02	0.00	0.0	0.0	0.0	—	0.91	0.77	—	3.8	0.007	0.70	0.0	0.04	18.30	0.01	1.809	34.17	0.00	0.0	0.0	0.0	—	1.02	0.92	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	6LHV	0900	2022-12-13	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.59	—	4.4	0.009	1.36	0.0	0.05	6.54	0.00	2.055	51.70	0.00	0.0	0.0	0.0	—	3.58	0.84	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	7XSK	33425	2022-12-12	2022-05-14	3.53	4.49	3.42	3.4	0.001	0.44	0.0	0.02	15.94	0.00	1.970	6.98	0.00	0.0	0.0	0.0	—	0.90	0.76	—	3.4	0.006	0.66	0.0	0.04	18.19	0.01	1.742	27.91	0.00	0.0	0.0	0.0	—	1.08	0.91	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7URM	26714	2022-12-11	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	23.67	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.17	0.0	0.05	22.99	0.01	1.988	30.29	0.00	0.0	0.0	0.0	—	1.70	0.15	0.55	—	1905	0	1	90	0	0	0	logfile
✔	7SAM	24952	2022-12-11	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.006	0.88	0.0	0.04	22.86	0.01	1.817	83.53	0.00	0.0	0.0	0.0	—	5.89	0.95	0.86	—	5399	0	1	169	0	0	1802	logfile
✔	7UR5	26705	2022-12-11	2022-04-21	2.6	2.89	2.82	2.9	0.008	1.48	0.0	0.11	25.09	0.01	2.204	2.44	0.00	0.0	0.0	0.0	—	0.05	0.58	—	2.9	0.006	0.91	0.0	0.05	20.81	0.01	2.000	17.31	0.00	0.0	0.0	0.0	—	1.86	0.08	0.66	—	5709	0	3	270	0	0	0	logfile
✔	7RZU	24778	2022-12-11	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.005	0.52	0.0	0.03	15.91	0.00	2.234	8.11	1.75	0.0	100.0	0.0	4.99	0.49	0.80	0.81	1.62	2439	324	6	0	0	0	0	logfile
✔	7XSN	33428	2022-12-11	2022-05-14	3.01	4.02	3.04	3.2	0.013	1.06	0.0	0.05	16.67	0.01	2.252	5.79	0.00	0.0	0.0	0.0	—	0.91	0.84	—	3.2	0.006	0.62	0.0	0.03	16.36	0.00	2.110	21.47	0.00	0.0	0.0	0.0	—	0.27	0.92	0.87	—	8279	0	1	387	0	0	0	logfile
✔	7RZT	24777	2022-12-11	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.003	0.32	0.0	0.03	15.54	0.00	2.332	5.44	0.35	0.0	100.0	0.0	6.21	0.24	0.80	0.83	3.03	2451	324	6	0	0	0	0	logfile
✔	6WKY	21813	2022-12-12	2020-04-17	4.2	4.29	—	4.1	0.006	0.74	0.0	0.05	16.88	0.00	2.366	8.91	0.00	0.6	99.4	0.0	-5.20	0.76	0.88	—	4.1	0.004	0.94	0.0	0.05	15.75	0.00	2.311	20.60	0.00	0.2	99.8	0.0	-1.99	1.44	0.75	0.86	—	9140	1160	40	0	0	0	0	logfile
✔	6WL9	21818	2022-12-15	2020-04-18	4.2	4.68	—	4.4	0.006	0.53	0.0	0.04	13.18	0.00	2.052	24.33	0.00	1.9	98.1	0.0	1.21	0.74	0.87	—	4.4	0.004	0.88	0.0	0.05	13.49	0.00	2.197	19.25	0.09	0.2	99.8	0.0	2.25	1.51	0.73	0.86	—	23400	3016	104	0	0	0	0	logfile
✔	6VSA	21373	2022-12-12	2020-02-10	2.32	3.14	—	2.5	0.013	2.26	75.0	0.16	18.03	0.01	2.048	13.42	4.44	2.3	97.7	0.0	-1.58	0.94	0.94	4.86	2.5	0.004	0.60	0.0	0.04	17.47	0.00	2.162	11.59	1.64	0.3	99.7	0.1	1.40	1.15	0.93	0.91	4.43	9712	1175	10	0	0	42	0	logfile
✔	6VSC	21376	2022-12-12	2020-02-11	2.6	2.97	—	2.9	0.014	2.41	75.0	0.15	18.44	0.01	2.153	16.56	7.73	3.9	96.1	0.0	-1.96	0.91	0.90	3.76	2.9	0.004	0.76	0.0	0.04	18.30	0.01	2.077	17.71	3.57	0.3	99.7	0.1	0.62	1.21	0.86	0.85	3.56	9670	1175	5	0	0	0	0	logfile
✔	7TiK	25912	2022-12-11	2022-01-13	2.4	2.38	—	2.0	0.007	0.49	0.0	0.04	16.31	0.00	2.218	8.52	0.00	4.6	95.4	0.0	1.31	0.77	0.80	1.31	2.0	0.004	0.49	0.0	0.04	16.44	0.00	2.228	10.65	1.01	0.3	99.7	0.0	5.49	0.93	0.79	0.81	1.38	2565	339	6	0	0	0	0	logfile
✔	7UL2	26589	2022-12-11	2022-04-03	2.4	2.59	2.47	2.6	0.008	1.02	0.0	0.06	12.80	0.01	2.306	6.83	0.84	1.5	98.5	0.0	1.60	0.71	0.84	4.40	2.6	0.003	0.54	0.0	0.04	14.14	0.00	2.266	2.21	0.42	0.3	99.7	0.0	2.53	1.31	0.65	0.84	2.79	2624	347	3	0	2	13	0	logfile
✔	6WL0	21814	2022-12-12	2020-04-17	4.4	4.62	—	4.4	0.006	0.82	0.0	0.04	18.91	0.00	2.353	8.18	0.00	0.0	100.0	0.0	-5.48	0.79	0.88	—	4.4	0.005	0.97	0.0	0.04	14.48	0.00	2.146	21.73	0.09	0.4	99.6	0.0	0.45	1.67	0.79	0.85	—	11480	1476	41	0	0	0	0	logfile
✔	6MRT	9212	2022-12-11	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.46	0.0	0.03	15.43	0.00	2.226	3.14	1.29	0.5	99.5	0.0	5.71	3.08	0.73	0.86	2.07	26868	3420	12	0	0	0	0	logfile
✔	6L3V	0827	2022-12-14	2019-10-15	2.63	2.90	2.72	2.9	0.009	0.92	0.0	0.04	17.16	0.01	2.218	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	2.9	0.002	0.58	0.0	0.03	16.60	0.00	2.191	1.81	1.72	0.5	99.5	0.0	2.35	3.59	0.58	0.87	2.87	19416	1206	12	0	6	0	9528	logfile
✔	6L3U	0826	2022-12-14	2019-10-15	2.53	2.59	2.48	2.6	0.010	0.96	0.0	0.05	16.88	0.01	2.206	0.45	3.01	1.9	98.1	0.0	-2.86	0.64	0.84	4.02	2.6	0.002	0.50	0.0	0.03	16.80	0.00	2.116	1.75	1.41	0.5	99.5	0.0	2.85	2.33	0.63	0.86	2.81	19698	1206	18	0	12	174	9588	logfile
✔	6WL8	21817	2022-12-15	2020-04-18	4.1	4.58	—	4.3	0.005	0.65	0.0	0.05	15.48	0.00	2.395	2.78	0.00	0.0	100.0	0.0	-1.08	0.73	0.86	—	4.2	0.004	0.76	0.0	0.04	14.63	0.00	2.281	14.04	0.00	0.5	99.5	0.0	3.46	2.62	0.74	0.87	—	23850	3074	106	0	0	0	0	logfile

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