Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3JBS	6478	2021-12-01	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.004	0.63	0.0	0.04	18.27	0.00	2.222	7.93	3.29	1.7	98.3	0.0	0.83	1.30	0.22	0.81	3.95	1401	175	1	0	0	0	0	logfile
✔	7D4F	30572	2021-12-01	2020-09-23	2.57	2.76	—	2.7	0.011	0.98	0.0	0.06	13.80	0.01	1.326	5.95	0.76	2.2	97.8	0.0	-2.50	0.73	0.85	3.63	2.8	0.002	0.51	0.0	0.04	16.07	0.00	2.216	5.79	1.81	1.7	98.3	0.0	0.46	0.44	0.75	0.88	3.47	9534	1181	4	0	4	0	0	logfile
✔	7F4i	31453	2021-12-01	2021-06-18	3.1	3.87	—	3.5	0.009	1.22	1.0	0.06	11.96	0.01	2.169	1.75	0.00	4.3	95.7	0.0	-0.38	0.67	0.82	3.32	3.5	0.003	0.72	1.0	0.04	14.84	0.00	2.132	9.62	0.35	1.7	98.3	0.0	1.56	2.50	0.66	0.83	1.93	8031	1029	7	0	2	0	0	logfile
✔	7RPH	24614	2021-12-01	2021-08-03	2.5	2.68	2.59	2.7	0.017	1.89	4.0	0.11	14.66	0.01	1.952	2.03	0.61	2.1	97.9	0.0	-0.70	0.53	0.76	4.93	2.7	0.002	0.61	0.0	0.04	15.96	0.00	2.202	6.54	2.33	1.7	98.3	0.0	1.75	1.30	0.67	0.85	2.95	8573	926	1	0	36	86	0	logfile
✔	6X4S	22042	2021-12-01	2020-05-22	3.5	3.84	—	3.9	0.007	0.77	0.0	0.05	15.59	0.00	2.077	11.03	0.97	1.9	98.1	0.0	1.34	0.72	0.75	1.39	3.9	0.003	0.71	0.0	0.04	17.87	0.00	2.114	11.97	1.17	1.8	98.2	0.0	4.20	1.53	0.72	0.76	1.05	5373	706	9	0	1	0	0	logfile
✔	6WZG	21972	2021-12-01	2020-05-13	2.3	2.06	2.22	2.3	0.012	1.56	18.0	0.12	13.99	0.01	2.270	4.92	1.65	2.0	98.0	0.0	0.81	0.66	0.71	4.83	2.3	0.003	0.57	0.0	0.04	16.28	0.00	2.162	5.95	1.76	1.8	98.2	0.0	1.69	0.99	0.74	0.86	4.86	8939	1165	6	0	0	0	0	logfile
✔	7P5C	13198	2021-12-01	2021-07-14	3.2	3.07	3.09	3.3	0.004	0.58	0.0	0.04	14.51	0.00	2.220	6.92	0.00	2.1	97.9	0.0	2.41	0.57	0.82	2.09	3.3	0.003	0.55	0.0	0.04	15.96	0.00	2.237	6.27	0.46	1.8	98.2	0.0	4.20	0.32	0.53	0.80	1.29	6222	784	6	0	8	0	0	logfile
✔	6KNF	0730	2021-12-01	2019-08-05	2.99	3.24	—	3.2	0.007	0.63	0.0	0.05	15.04	0.00	2.015	7.65	8.82	3.6	96.4	0.0	-2.46	0.83	0.91	4.90	3.2	0.005	0.58	0.0	0.05	15.40	0.00	2.010	7.33	5.15	1.8	98.2	0.0	-0.72	0.93	0.83	0.91	4.41	7749	1002	6	0	6	0	0	logfile
✔	7JVQ	22510	2021-12-01	2020-08-22	3.0	3.32	—	3.3	0.005	0.99	0.0	0.06	8.71	0.01	2.268	4.24	0.00	3.1	96.9	0.0	-2.33	0.61	0.76	2.77	3.3	0.003	0.61	0.0	0.04	14.64	0.00	2.110	7.06	2.44	1.8	98.2	0.0	0.54	1.25	0.60	0.77	2.36	8485	1047	6	0	9	0	0	logfile
✔	5VRF	8728	2021-12-01	2017-05-10	4.1	4.21	—	4.1	0.011	1.28	0.0	0.06	10.38	0.01	1.994	8.62	0.00	2.5	97.5	0.0	-4.10	0.82	0.82	—	4.1	0.003	0.72	0.0	0.04	13.49	0.00	1.994	11.46	0.00	1.8	98.2	0.0	2.10	3.54	0.83	0.83	—	4378	564	4	0	8	0	0	logfile
✔	6NT9	0506	2021-12-01	2019-01-28	3.3	3.42	—	3.3	0.010	0.89	0.0	0.06	9.66	0.01	2.250	1.52	0.18	3.5	96.5	0.0	-2.03	0.81	0.86	3.98	3.3	0.004	0.53	0.0	0.04	14.49	0.00	2.218	4.29	0.36	1.8	98.2	0.0	2.41	0.59	0.82	0.87	3.11	9906	1228	4	0	0	0	0	logfile
✔	7N70	24214	2021-12-01	2021-06-09	2.8	3.43	2.92	3.3	0.005	0.71	0.0	0.05	13.16	0.01	2.109	7.93	0.00	1.6	98.4	0.0	0.27	0.74	0.85	2.88	3.3	0.003	0.58	0.0	0.04	15.05	0.00	1.911	7.19	1.61	1.8	98.2	0.0	1.17	0.42	0.66	0.81	2.07	7953	1032	1	0	4	0	0	logfile
✔	7LCJ	23275	2021-12-01	2021-01-11	2.82	3.02	2.78	3.1	0.010	1.51	3.0	0.24	15.14	0.01	2.216	8.57	1.16	3.9	96.1	0.0	0.54	0.46	0.80	2.75	3.1	0.004	0.60	0.0	0.04	17.06	0.00	2.254	4.99	1.16	1.8	98.2	0.0	1.29	1.69	0.49	0.82	3.04	3264	390	1	0	1	17	0	logfile
✔	6LN6	0925	2021-12-01	2019-12-28	2.9	3.03	2.87	3.0	0.005	0.61	0.0	0.04	11.78	0.00	2.035	6.53	0.00	2.0	98.0	0.0	-3.94	0.65	0.82	3.55	3.0	0.004	0.65	0.0	0.04	15.40	0.00	2.034	6.40	1.85	1.8	98.2	0.0	0.35	1.33	0.68	0.85	3.39	7836	1010	1	0	4	0	0	logfile
✔	7KDT	22829	2021-12-01	2020-10-09	3.05	3.34	3.19	3.4	0.012	1.74	0.0	0.09	14.56	0.02	2.562	0.12	0.47	1.4	98.6	0.0	-1.64	0.70	0.77	2.95	3.3	0.002	0.51	0.0	0.03	17.10	0.00	2.221	6.08	0.00	1.8	98.2	0.0	3.06	2.82	0.68	0.79	2.35	8064	505	2	0	0	0	4042	logfile
✔	7LD4	23281	2021-12-01	2021-01-12	3.3	3.47	3.24	3.4	0.008	1.12	0.0	0.07	12.43	0.01	2.270	3.57	0.26	3.0	97.0	0.0	-0.88	0.71	0.79	3.50	3.4	0.003	0.61	0.0	0.04	15.29	0.00	2.203	8.56	0.40	1.8	98.2	0.0	0.64	0.53	0.79	0.84	2.38	6981	887	4	0	1	1	0	logfile
✔	6VTL	21381	2021-12-02	2020-02-12	3.65	4.17	—	4.0	0.004	0.79	0.0	0.05	13.87	0.01	2.306	5.90	0.00	3.4	96.6	0.0	-4.96	0.68	0.72	2.51	4.0	0.003	0.69	0.0	0.04	15.77	0.00	2.181	10.64	0.98	1.9	98.1	0.0	-1.36	0.53	0.71	0.77	1.82	10242	1338	6	0	6	0	0	logfile
✔	7EW3	31346	2021-12-01	2021-05-24	3.1	3.34	—	3.4	0.004	0.49	0.0	0.04	14.15	0.00	2.274	4.63	0.00	1.4	98.6	0.0	1.36	0.66	0.76	2.23	3.4	0.003	0.55	0.0	0.04	15.66	0.00	2.098	4.68	0.20	1.9	98.1	0.0	1.26	1.36	0.64	0.77	2.46	9072	1149	6	0	5	0	0	logfile
✔	7L1V	23119	2021-12-01	2020-12-15	3.0	3.37	—	3.3	0.008	1.06	0.0	0.06	12.85	0.01	2.306	3.23	0.30	2.8	97.2	0.0	-2.91	0.71	0.86	4.16	3.3	0.003	0.62	0.0	0.04	15.78	0.00	2.155	7.11	2.02	1.9	98.1	0.0	0.42	0.95	0.73	0.88	3.43	9606	1253	7	0	1	0	0	logfile
✔	7NPS	12518	2021-12-01	2021-02-28	3.81	3.93	3.82	3.9	0.010	1.15	6.0	0.08	11.02	0.01	2.182	1.23	0.00	2.5	97.5	0.0	-1.44	0.82	0.82	2.59	3.9	0.003	0.58	0.0	0.05	12.89	0.00	1.895	2.75	0.00	1.9	98.1	0.0	0.06	0.68	0.83	0.83	2.25	55350	3732	9	0	0	0	27681	logfile

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