Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6MRT	9212	2022-07-02	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.46	0.0	0.03	15.43	0.00	2.226	3.14	1.29	0.5	99.5	0.0	5.71	3.08	0.73	0.87	2.07	26868	3420	12	0	0	0	0	logfile
✔	6WL8	21817	2022-07-05	2020-04-18	4.1	4.58	—	4.3	0.005	0.65	0.0	0.05	15.48	0.00	2.395	2.78	0.00	0.0	100.0	0.0	-1.08	0.73	0.86	—	4.2	0.004	0.76	0.0	0.04	14.63	0.00	2.281	14.04	0.00	0.5	99.5	0.0	3.46	2.62	0.74	0.87	—	23850	3074	106	0	0	0	0	logfile
✔	7LRC	23494	2022-07-03	2021-02-16	2.97	4.17	2.92	3.5	0.002	0.50	0.0	0.04	7.94	0.01	1.795	5.57	0.30	0.8	99.2	0.0	3.49	0.72	0.74	3.03	3.5	0.002	0.57	0.0	0.04	11.43	0.00	2.024	9.91	0.90	0.5	99.5	0.0	3.55	0.55	0.76	0.85	2.96	6202	762	6	0	6	0	0	logfile
✔	6SD4	10148	2022-07-07	2019-07-26	2.8	3.00	2.71	2.9	0.010	0.78	0.0	0.04	12.27	0.00	2.235	7.10	0.75	9.7	89.7	0.7	-4.67	0.78	0.85	5.63	2.9	0.003	0.63	0.0	0.04	17.15	0.00	2.001	7.28	1.73	0.5	99.5	0.0	0.90	0.53	0.73	0.85	4.58	40562	5134	34	0	0	0	0	logfile
✔	7SiP	25147	2022-07-03	2021-10-14	3.0	3.27	—	3.3	0.011	1.17	0.0	0.04	16.74	0.01	2.313	3.17	0.00	0.9	99.1	0.0	0.93	0.63	0.81	2.85	3.3	0.003	0.49	0.0	0.04	15.47	0.00	2.222	3.43	1.74	0.5	99.5	0.0	1.36	0.99	0.61	0.83	2.67	7560	892	12	0	36	20	0	logfile
✔	7CG7	30351	2022-07-07	2020-06-30	3.61	3.98	—	3.9	0.005	0.66	0.0	0.04	12.61	0.00	2.027	9.40	2.26	5.6	94.4	0.0	-2.97	0.77	0.82	1.47	3.9	0.004	0.62	0.0	0.04	15.70	0.00	2.122	12.09	0.46	0.5	99.5	0.0	0.17	1.50	0.76	0.81	1.71	40290	5100	34	0	0	0	0	logfile
✔	6VSA	21373	2022-07-03	2020-02-10	2.32	3.14	—	2.5	0.013	2.26	75.0	0.16	18.03	0.01	2.048	13.42	4.44	2.3	97.7	0.0	-1.58	0.94	0.94	4.86	2.5	0.006	0.63	0.0	0.04	17.50	0.00	2.159	10.74	2.03	0.6	99.3	0.1	1.33	1.15	0.93	0.91	4.38	9712	1175	10	0	0	42	0	logfile
✔	7o6E	12738	2022-07-06	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.61	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.004	0.52	0.0	0.03	18.17	0.01	2.172	3.96	0.38	0.6	99.4	0.0	4.21	0.27	0.88	0.89	5.41	35304	4248	48	0	0	1392	0	logfile
✔	6MRU	9213	2022-07-03	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.002	0.46	0.0	0.03	13.26	0.00	2.192	3.53	0.00	0.6	99.4	0.0	5.66	3.08	0.75	0.86	1.81	29107	3705	13	0	0	0	0	logfile
✔	7PCH	13320	2022-07-03	2021-08-03	2.89	3.82	2.93	3.4	0.012	1.54	0.0	0.10	13.62	0.01	2.343	0.97	0.55	3.7	96.3	0.0	1.22	0.89	0.83	3.70	3.4	0.003	0.63	0.0	0.04	14.48	0.00	2.180	6.57	0.64	0.6	99.4	0.0	2.27	1.58	0.90	0.88	3.64	10798	1254	16	0	4	510	0	logfile
✔	6ZGL	11210	2022-07-04	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.41	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.56	0.0	0.04	15.75	0.00	2.118	4.99	1.00	0.6	99.4	0.0	3.59	0.75	0.76	0.83	7.07	15760	1848	24	0	0	964	0	logfile
✔	7KoD	22972	2022-07-04	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	2.0	0.005	0.49	0.0	0.04	13.81	0.00	1.858	2.53	0.27	0.6	99.4	0.0	5.26	0.58	0.88	0.94	8.02	68186	4128	48	0	0	1727	32643	logfile
✔	7KoG	22975	2022-07-04	2020-11-09	4.25	3.30	—	6.0	0.005	1.03	1.0	0.04	18.29	0.00	1.580	10.26	0.70	0.5	99.5	0.0	-6.22	0.69	0.62	—	4.1	0.003	0.75	0.0	0.04	16.82	0.00	2.224	11.61	0.05	0.7	99.3	0.0	2.96	2.63	0.75	0.74	—	17384	2154	2	0	0	0	0	logfile
✔	6A7F	6993	2022-07-03	2018-07-03	3.4	3.51	—	3.4	0.014	1.17	0.0	0.06	11.20	0.01	2.271	4.26	0.00	0.0	100.0	0.0	-2.13	0.55	0.84	0.56	3.4	0.004	0.72	0.0	0.04	17.88	0.00	2.141	15.46	0.41	0.7	99.3	0.0	2.04	2.05	0.60	0.87	0.03	10830	1410	30	0	0	0	0	logfile
✔	7JLW	22382	2022-07-07	2020-07-30	2.5	2.52	2.49	2.5	0.011	1.39	0.0	0.07	14.27	0.00	2.377	4.26	1.14	1.1	98.9	0.0	0.51	0.62	0.82	4.64	2.5	0.004	0.51	0.0	0.04	15.02	0.00	2.005	5.66	1.42	0.7	99.3	0.0	2.85	0.97	0.67	0.86	4.30	40284	2316	36	0	132	204	18720	logfile
✔	6E8G	9005	2022-07-06	2018-07-29	2.9	3.09	2.96	3.0	0.006	0.89	0.0	0.05	10.62	0.01	2.201	2.53	0.34	0.9	99.1	0.0	-1.52	0.59	0.84	2.92	3.0	0.005	0.62	0.0	0.04	17.84	0.00	2.154	9.69	2.37	0.7	99.3	0.0	4.20	2.01	0.60	0.89	1.56	97272	12276	72	0	0	0	0	logfile
✔	7D84	30612	2022-07-07	2020-10-07	3.7	4.34	3.76	4.2	0.009	0.90	0.0	0.05	15.25	0.01	2.271	6.09	7.78	2.1	97.9	0.0	-2.70	0.84	0.84	2.66	4.2	0.003	0.81	0.0	0.04	17.51	0.00	2.102	12.98	0.25	0.7	99.3	0.0	0.26	1.36	0.82	0.82	2.99	42704	5406	34	0	0	0	0	logfile
✔	6ZLQ	11272	2022-07-06	2020-07-01	3.3	3.41	—	3.3	0.009	0.74	0.0	0.04	17.49	0.00	0.983	16.41	8.48	3.6	96.4	0.0	-3.01	0.81	0.83	1.76	3.3	0.003	0.60	0.0	0.03	18.08	0.00	1.283	15.19	1.05	0.8	99.2	0.0	3.29	0.69	0.80	0.83	1.13	33823	4185	38	0	16	0	0	logfile
✔	7UNL	26626	2022-07-03	2022-04-11	2.45	3.35	2.50	3.1	0.003	0.56	0.0	0.04	14.66	0.00	2.143	2.41	1.94	1.1	98.9	0.0	2.30	0.72	0.83	3.52	3.1	0.003	0.52	0.0	0.04	14.65	0.00	2.011	3.27	1.29	0.8	99.2	0.0	4.42	0.66	0.56	0.82	3.07	11724	734	6	0	8	120	5900	logfile
✔	6ZBG	11154	2022-07-04	2020-06-08	3.2	3.97	3.37	3.6	0.010	1.15	0.0	0.07	13.62	0.01	2.468	1.13	0.00	1.1	98.9	0.0	0.72	0.84	0.78	2.20	3.6	0.002	0.49	0.0	0.03	15.27	0.00	2.144	4.35	0.00	0.8	99.2	0.0	4.36	1.86	0.85	0.79	1.37	19534	1160	4	0	0	0	9902	logfile

• ← previous
• Page 3 of 392
• next →