Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YCH	33739	2023-08-10	2022-07-01	3.09	4.46	3.30	3.5	0.002	0.48	0.0	0.02	14.59	0.00	1.420	15.91	0.00	0.0	0.0	0.0	—	0.92	0.84	—	3.6	0.007	0.67	0.0	0.04	15.78	0.00	1.792	32.28	0.00	0.0	0.0	0.0	—	1.47	0.94	0.88	—	8661	0	2	404	4	0	0	logfile
✔	7T6E	25714	2023-08-09	2021-12-13	3.1	3.11	—	3.1	0.129	5.90	125.0	0.23	23.20	0.02	2.041	30.29	0.00	0.0	0.0	0.0	—	0.60	0.87	—	3.1	0.122	5.61	134.0	0.36	21.80	0.02	2.082	31.46	0.00	0.0	0.0	0.0	—	0.19	0.66	0.90	—	3480	0	60	0	300	0	0	logfile
✔	7YC8	33736	2023-08-10	2022-07-01	4.14	7.25	4.31	4.1	0.002	0.51	0.0	0.02	16.48	0.00	2.079	18.05	0.00	0.0	0.0	0.0	—	0.96	0.87	—	4.1	0.006	0.80	0.0	0.04	21.98	0.01	1.978	68.54	0.00	0.0	0.0	0.0	—	1.23	0.97	0.89	—	8335	0	1	388	1	0	0	logfile
✔	6X64	22069	2023-08-14	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.009	1.23	0.0	0.05	5.42	0.00	2.111	10.35	0.00	0.0	0.0	0.0	—	2.35	0.69	0.86	—	15840	0	36	0	3168	0	0	logfile
✔	7XD7	33138	2023-08-10	2022-03-26	3.02	3.40	—	3.1	0.003	0.61	0.0	0.04	14.03	0.00	1.736	0.77	0.00	0.0	0.0	0.0	—	0.90	0.86	—	3.1	0.007	0.66	0.0	0.04	15.12	0.00	1.878	8.19	0.00	0.0	0.0	0.0	—	2.01	0.92	0.92	—	8693	0	1	405	30	0	0	logfile
✔	7URM	26714	2023-08-09	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	23.67	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.16	0.0	0.05	22.87	0.01	1.983	29.94	0.00	0.0	0.0	0.0	—	1.70	0.15	0.54	—	1905	0	1	90	0	0	0	logfile
✔	7EZ0	31385	2023-08-10	2021-06-01	3.14	3.26	—	3.2	0.003	0.56	0.0	0.03	14.43	0.00	1.804	2.25	0.00	0.0	0.0	0.0	—	0.74	0.79	—	3.2	0.005	0.67	0.0	0.04	15.53	0.00	1.862	8.10	0.00	0.0	0.0	0.0	—	1.91	0.76	0.86	—	8306	0	1	387	27	0	0	logfile
✔	7R6M	24282	2023-08-10	2021-06-22	3.68	3.27	—	3.4	0.006	0.94	0.0	0.04	17.86	0.01	2.005	4.72	0.00	0.0	0.0	0.0	—	0.53	0.72	—	3.4	0.007	0.85	0.0	0.04	18.31	0.01	1.758	16.73	0.00	0.0	0.0	0.0	—	0.19	0.53	0.72	—	7755	0	3	362	13	0	0	logfile
✔	7ZFW	14704	2023-08-13	2022-04-01	3.8	4.62	3.46	3.0	0.006	0.83	0.0	0.05	17.92	0.03	2.266	2.77	0.00	0.0	0.0	0.0	—	0.32	0.81	—	3.0	0.009	0.90	0.0	0.04	20.26	0.01	1.952	38.01	0.00	0.0	0.0	0.0	—	2.55	0.33	0.85	—	13188	0	1	615	0	0	0	logfile
✔	7YGD	33816	2023-08-10	2022-07-11	3.41	4.13	3.42	3.3	0.002	0.49	0.0	0.03	15.33	0.00	2.100	14.25	0.00	0.0	0.0	0.0	—	0.90	0.81	—	3.3	0.007	0.75	0.0	0.04	17.38	0.01	1.823	32.82	0.00	0.0	0.0	0.0	—	1.50	0.91	0.89	—	8313	0	3	389	6	0	0	logfile
✔	7UVT	26816	2023-08-12	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	16.13	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.70	0.0	0.04	17.94	0.01	1.892	21.35	0.00	0.0	0.0	0.0	—	0.48	0.77	0.76	—	12409	0	1	386	0	0	4149	logfile
✔	8B3A	15824	2023-08-09	2022-09-16	3.8	3.66	2.91	4.1	0.009	1.89	0.0	0.10	27.06	0.09	2.613	1.89	0.00	0.0	100.0	0.0	-4.71	0.55	0.64	5.18	4.1	0.077	6.38	29.0	0.43	20.27	0.05	1.653	309.17	6.67	46.7	8.0	45.3	-10.71	2.72	0.41	0.54	3.39	2010	210	30	0	60	0	0	logfile
✔	7LQF	23484	2023-08-09	2021-02-13	3.8	3.13	—	4.0	0.016	1.46	0.0	0.03	18.37	0.00	2.258	22.81	2.08	0.0	100.0	0.0	-4.77	0.59	0.78	4.63	3.2	0.154	6.37	244.0	0.42	26.01	0.03	1.685	217.72	5.21	66.8	30.1	3.1	-9.48	1.76	0.69	0.86	2.78	5376	512	64	0	0	0	0	logfile
✔	7UUQ	26800	2023-08-09	2022-04-28	3.1	3.45	2.98	3.3	0.014	2.95	0.0	0.06	20.39	0.01	1.865	20.35	0.00	0.0	100.0	0.0	-9.31	0.68	0.85	2.95	3.3	0.118	4.71	11.0	0.23	25.10	0.02	1.642	53.03	1.10	65.5	31.5	3.0	-10.63	0.67	0.73	0.90	3.96	4760	364	98	0	98	0	0	logfile
✔	7LQE	23483	2023-08-09	2021-02-13	3.4	3.06	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.423	23.27	14.58	0.0	100.0	0.0	-5.94	0.57	0.80	5.06	3.2	0.151	5.20	240.0	0.38	25.46	0.02	1.745	134.94	4.40	60.8	38.2	1.0	-8.67	1.67	0.65	0.89	2.25	6048	576	72	0	0	0	0	logfile
✔	6S8F	10120	2023-08-22	2019-07-09	4.0	4.88	—	3.9	0.007	1.26	0.0	0.06	11.68	0.01	1.859	6.71	0.80	9.6	90.3	0.1	-4.38	0.88	0.77	—	3.9	0.042	2.95	51.0	0.11	17.89	0.02	1.488	187.53	3.85	53.1	44.5	2.4	-7.96	2.39	0.90	0.88	—	33664	3530	4	0	1616	0	0	logfile
✔	6BWi	7299	2023-08-17	2017-12-15	3.7	3.76	—	3.7	0.011	1.39	4.0	0.09	12.09	0.01	1.745	22.56	1.36	8.1	91.5	0.4	-5.08	0.67	0.73	2.06	3.7	0.089	4.99	124.0	0.27	21.79	0.03	1.600	112.56	5.62	43.9	49.5	6.5	-8.57	2.58	0.80	0.86	2.01	23491	2484	8	0	813	0	0	logfile
✔	7K0S	22615	2023-08-12	2020-09-05	4.5	4.73	4.68	4.6	0.003	0.64	2.0	0.04	13.91	0.00	2.069	9.69	0.95	7.8	92.0	0.2	-0.12	0.80	0.73	—	4.6	0.043	3.18	225.0	0.13	17.01	0.02	1.355	135.88	0.00	44.3	52.4	3.3	-7.51	2.27	0.84	0.82	—	115935	12896	8	0	3557	0	0	logfile
✔	7LQi	23487	2023-08-10	2021-02-13	3.5	3.92	—	3.9	0.016	1.40	0.0	0.03	20.42	0.00	2.242	22.86	5.00	0.0	100.0	0.0	-3.42	0.62	0.78	4.80	3.9	0.051	2.84	5.0	0.14	22.95	0.01	1.918	120.77	3.33	46.5	53.5	0.0	-7.05	1.54	0.65	0.83	2.52	8400	800	100	0	0	0	0	logfile
✔	7TDH	25829	2023-08-13	2021-12-31	4.0	4.95	4.67	4.5	0.003	0.77	0.0	0.04	13.63	0.00	2.254	4.64	0.00	5.1	94.9	0.0	-1.74	0.84	0.67	—	4.5	0.030	2.65	66.0	0.11	19.67	0.02	0.888	153.73	3.43	43.9	54.5	1.5	-7.26	2.44	0.88	0.83	—	117532	13060	8	0	3616	0	0	logfile

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