Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ZYD	11557	2021-08-10	2020-07-31	3.0	3.62	2.76	3.4	0.016	1.10	0.0	0.12	15.96	0.01	2.269	4.82	0.00	5.1	94.9	0.0	-3.12	0.75	0.77	4.36	3.4	0.057	2.38	0.0	0.17	18.71	0.02	1.745	52.32	13.32	21.7	78.2	0.1	-6.11	1.48	0.79	0.85	3.38	31423	1792	14	0	476	0	14490	logfile
✔	6NYL	0545	2021-08-10	2019-02-11	3.7	4.50	—	4.1	0.008	1.14	0.0	0.06	11.10	0.01	2.233	10.29	0.97	16.1	83.9	0.0	-5.60	0.87	0.74	2.26	4.1	0.006	0.85	0.0	0.05	13.00	0.00	2.126	27.78	0.31	21.7	78.3	0.0	-4.81	0.57	0.87	0.74	1.93	68664	9000	12	0	0	0	0	logfile
✔	5US9	8605	2021-08-24	2017-02-13	3.0	3.25	—	3.2	0.010	1.37	0.0	0.07	10.63	0.01	1.898	35.47	0.00	16.6	80.6	2.8	-4.40	0.71	0.83	4.39	3.2	0.006	1.11	0.0	0.06	16.92	0.01	2.013	22.26	3.26	18.8	78.5	2.7	-3.31	1.81	0.68	0.83	3.42	244620	30480	60	0	0	0	0	logfile
✔	6JSi	9882	2021-08-09	2019-04-08	4.7	4.70	—	4.6	0.007	1.49	0.0	0.06	15.33	0.01	2.231	10.63	2.42	23.2	72.3	4.5	-6.05	0.64	0.72	—	4.6	0.003	0.86	0.0	0.04	12.73	0.00	2.092	13.30	0.00	20.3	78.6	1.1	-3.60	0.78	0.62	0.67	—	62820	5844	9	0	4044	0	0	logfile
✔	6EK5	3521	2021-08-08	2017-09-25	4.2	4.30	4.14	4.3	0.004	1.21	0.0	0.06	10.40	0.01	2.104	10.95	0.61	19.3	80.6	0.1	-5.33	0.65	0.57	—	4.2	0.009	1.21	7.0	0.06	13.84	0.01	1.413	41.66	0.09	21.2	78.7	0.1	-4.67	2.19	0.74	0.73	—	165959	20300	110	0	0	0	0	logfile
✔	6JXA	9892	2021-08-08	2019-04-23	4.3	4.65	—	4.2	0.017	1.81	3.0	0.10	9.08	0.01	1.926	28.59	2.04	12.2	79.3	8.5	-2.72	0.49	0.42	—	4.1	0.005	1.04	0.0	0.05	11.50	0.01	2.125	24.11	0.00	18.4	78.8	2.9	-2.88	1.81	0.66	0.65	—	14100	2244	1	0	0	0	0	logfile
✔	6RTB	4996	2021-08-07	2019-05-22	3.46	3.57	—	3.5	0.009	1.23	0.0	0.07	15.08	0.01	2.122	6.27	2.61	18.9	80.9	0.2	-4.64	0.62	0.79	4.22	3.5	0.004	0.78	0.0	0.05	15.76	0.00	2.161	14.31	0.87	21.0	79.0	0.0	-4.13	0.90	0.63	0.80	3.63	4681	699	10	0	0	0	0	logfile
✔	6NYM	0546	2021-08-10	2019-02-11	3.6	4.42	—	4.1	0.005	0.94	0.0	0.06	10.43	0.00	2.260	8.12	0.32	12.6	87.4	0.0	-5.10	0.87	0.78	2.54	4.2	0.007	0.85	1.0	0.05	13.06	0.00	2.152	19.90	0.49	21.0	79.0	0.0	-4.47	1.22	0.88	0.80	2.19	68664	9000	12	0	0	0	0	logfile
✔	3JCD	6549	2021-08-15	2015-12-01	3.7	5.07	—	19.0	0.006	0.84	0.0	0.04	14.69	0.00	1.289	14.54	0.02	9.6	85.8	4.5	-2.43	0.34	0.04	0.30	3.4	0.012	1.73	4.0	0.08	22.58	0.01	1.060	92.69	0.27	19.3	79.2	1.5	-4.64	3.41	0.76	0.52	0.22	147815	5982	57	4715	0	0	0	logfile
✔	6H3J	0134	2021-08-09	2018-07-18	3.7	3.83	—	3.7	0.007	0.87	0.0	0.05	10.17	0.00	2.025	43.22	0.05	23.8	76.2	0.0	-6.63	0.77	0.85	3.89	3.7	0.004	0.62	0.0	0.04	13.45	0.00	1.907	55.27	0.54	20.8	79.2	0.0	-5.09	2.68	0.78	0.86	2.93	20301	2511	3	0	0	0	212	logfile
✔	6oKS	20103	2021-08-08	2019-04-15	4.2	4.44	—	4.3	0.008	1.15	0.0	0.05	17.36	0.01	2.299	5.88	9.80	18.3	81.7	0.0	-5.50	0.78	0.81	—	4.3	0.011	1.20	0.0	0.05	14.60	0.01	1.591	26.80	0.07	20.7	79.3	0.0	-5.00	2.22	0.79	0.83	—	13244	1610	14	0	0	0	0	logfile
✔	7ASK	11895	2021-08-08	2020-10-27	4.3	4.39	—	4.3	0.028	2.99	47.0	0.22	18.83	0.02	0.766	14.44	2.58	16.8	73.6	9.7	-6.07	0.17	0.51	—	4.3	0.021	1.21	1.0	0.05	15.43	0.01	1.974	20.95	0.00	19.2	79.5	1.3	-3.38	2.20	0.19	0.61	—	12285	1523	1	0	2	0	0	logfile
✔	5ZLU	6934	2021-08-16	2018-03-29	3.6	3.66	—	3.6	0.008	1.26	2.0	0.07	18.68	0.01	0.401	13.54	2.52	18.9	79.1	1.9	-5.90	0.78	0.77	1.74	3.6	0.006	0.93	2.0	0.05	18.64	0.01	1.790	13.01	0.91	19.7	79.6	0.8	-4.65	0.56	0.78	0.79	0.95	150313	6529	60	4596	4	0	0	logfile
✔	7AST	11904	2021-08-10	2020-10-28	4.0	3.84	—	3.5	0.016	1.10	1.0	0.06	15.36	0.01	1.913	32.08	0.00	20.8	78.6	0.6	-4.78	0.61	0.46	—	3.6	0.021	1.30	1.0	0.06	17.85	0.01	1.678	39.84	0.21	19.9	79.7	0.5	-4.06	1.43	0.66	0.53	—	34518	4365	17	0	36	0	0	logfile
✔	7C1D	30269	2021-08-07	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	17.40	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.004	0.69	0.0	0.05	14.89	0.00	2.232	21.81	0.52	20.1	79.9	0.0	-4.46	2.84	0.42	0.76	2.27	2034	306	6	0	0	0	0	logfile
✔	6S13	10079	2021-08-22	2019-06-18	3.58	3.67	—	5.8	0.023	1.27	2.0	0.06	22.26	0.01	1.596	18.72	21.29	20.5	79.4	0.1	-5.98	0.56	0.28	0.14	3.6	0.014	1.01	3.0	0.05	22.10	0.01	1.314	36.55	1.06	19.7	80.2	0.0	-4.71	2.60	0.67	0.58	0.81	233957	5608	52	4559	0	0	93218	logfile
✔	5YFP	6827	2021-08-10	2017-09-21	4.4	8.20	—	6.7	0.006	1.36	0.0	0.06	12.26	0.01	2.215	16.84	0.10	17.8	81.5	0.7	-6.11	0.83	0.34	—	5.5	0.005	1.04	0.0	0.05	10.54	0.00	2.069	29.56	0.10	19.4	80.3	0.3	-2.16	5.03	0.89	0.73	—	33096	5982	8	0	0	0	0	logfile
✔	6TNF	10531	2021-08-07	2019-12-07	3.8	2.90	3.67	2.7	0.034	1.65	0.0	0.27	15.46	0.01	2.236	7.75	0.00	17.8	81.5	0.7	-5.32	0.60	0.56	—	2.6	0.005	1.03	0.0	0.07	14.09	0.01	2.110	12.36	0.00	19.5	80.3	0.1	-3.51	0.61	0.65	0.64	—	9559	2206	5	0	66	0	0	logfile
✔	6FLT	4276	2021-08-07	2018-01-28	3.42	3.32	—	3.5	0.014	1.15	0.0	0.06	8.31	0.00	2.330	9.03	0.00	14.3	85.7	0.0	-5.36	0.44	0.74	2.91	3.5	0.004	0.62	0.0	0.05	10.15	0.00	2.181	9.65	0.25	19.6	80.4	0.0	-4.60	2.05	0.40	0.78	4.54	8060	580	10	0	0	0	4100	logfile
✔	5XLP	6731	2021-08-07	2017-05-11	4.2	4.23	—	4.2	0.009	1.36	0.0	0.06	14.75	0.01	2.194	12.48	0.57	18.2	81.4	0.5	-5.53	0.62	0.58	—	4.1	0.015	1.41	1.0	0.05	16.20	0.01	2.064	23.96	0.11	19.2	80.5	0.2	-4.09	2.46	0.66	0.65	—	9952	1343	6	24	0	0	0	logfile

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