Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6o9J	0661	2022-05-18	2019-03-14	3.9	3.92	—	3.9	0.006	1.25	25.0	0.10	17.39	0.01	0.154	55.38	23.17	26.6	58.7	14.7	-7.10	0.74	0.66	0.16	3.9	0.011	1.09	10.0	0.05	17.02	0.01	1.293	32.80	0.58	23.4	73.7	3.0	-4.89	1.14	0.79	0.75	0.36	142682	5731	53	4564	0	0	0	logfile
✔	3J2P	5499	2022-05-13	2012-11-30	3.6	3.28	—	3.4	0.009	1.92	0.0	0.12	17.49	0.02	2.155	110.70	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.004	0.95	0.0	0.05	17.92	0.01	1.899	74.82	1.47	22.8	73.8	3.4	-4.64	0.91	0.39	0.73	1.07	9890	1134	6	0	6	0	1086	logfile
✔	6TNG	10532	2022-05-12	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	11.35	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.006	1.02	0.0	0.00	7.42	0.01	2.133	21.25	0.00	25.4	74.3	0.3	-3.93	0.35	0.76	0.72	—	8240	2060	2	0	0	0	0	logfile
✔	6DJP	7939	2022-05-12	2018-05-25	4.8	5.02	—	4.8	0.011	2.00	0.0	0.08	5.34	0.01	2.368	0.45	0.00	4.6	95.4	0.0	-0.74	0.76	0.65	—	4.8	0.009	1.27	0.0	0.05	9.47	0.01	2.140	24.14	0.00	24.7	74.7	0.6	-4.67	1.25	0.82	0.77	—	7307	1393	8	0	23	0	0	logfile
✔	5YYS	6859	2022-05-15	2017-12-11	4.2	4.57	—	4.1	0.016	2.26	0.0	0.10	15.30	0.01	2.201	22.76	2.34	27.3	70.1	2.6	-5.98	0.85	0.71	—	4.1	0.004	1.31	0.0	0.06	12.64	0.01	1.988	34.20	0.00	24.3	75.2	0.5	-4.07	1.67	0.88	0.76	—	24044	3244	4	0	0	0	0	logfile
✔	7C1D	30269	2022-05-12	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	18.87	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.004	0.69	0.0	0.05	14.90	0.00	2.239	18.63	0.52	24.5	75.5	0.0	-4.57	2.82	0.39	0.75	2.42	2034	306	6	0	0	0	0	logfile
✔	6B19	7031	2022-05-12	2017-09-18	4.5	4.61	—	4.4	0.023	1.38	0.0	0.05	6.45	0.01	2.201	16.18	0.00	19.4	80.5	0.1	-5.73	0.74	0.63	—	4.4	0.003	0.87	0.0	0.04	13.09	0.00	1.943	28.42	0.00	24.5	75.5	0.0	-5.38	1.33	0.77	0.65	—	5699	907	4	38	0	0	409	logfile
✔	3LoS	5137	2022-05-13	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	88.10	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.007	1.33	0.0	0.05	16.09	0.01	1.037	31.44	0.00	20.2	75.6	4.2	-4.47	1.32	0.62	0.54	—	63712	8512	16	0	0	0	0	logfile
✔	5A9Z	6396	2022-05-22	2015-07-23	4.7	4.83	—	4.7	0.013	1.89	26.0	0.14	23.31	0.03	0.000	199.55	29.15	25.1	49.6	25.2	-7.73	0.81	0.65	—	4.7	0.007	1.03	0.0	0.05	19.42	0.01	0.000	40.53	0.19	21.0	76.7	2.4	-4.44	2.93	0.87	0.82	—	150547	6671	58	4527	131	0	0	logfile
✔	7DWV	30887	2022-05-12	2021-01-18	3.07	2.95	—	3.6	0.007	0.80	0.0	0.06	14.69	0.00	2.258	17.63	0.00	26.8	73.2	0.0	-7.45	0.41	0.75	4.09	4.1	0.004	0.73	0.0	0.05	17.17	0.00	2.189	19.08	0.00	23.2	76.8	0.0	-5.96	1.50	0.41	0.75	2.79	2064	258	6	0	0	0	0	logfile
✔	7M62	23687	2022-05-12	2021-03-25	3.9	3.91	—	4.3	0.007	1.13	0.0	0.07	14.83	0.00	2.321	32.83	0.00	23.3	76.7	0.0	-4.97	0.55	0.62	2.27	4.3	0.003	0.99	0.0	0.05	15.87	0.00	2.105	21.17	0.00	22.7	77.3	0.0	-4.56	2.11	0.57	0.65	3.17	2380	320	10	0	10	0	0	logfile
✔	6VE2	21152	2022-05-16	2019-12-28	4.3	4.80	4.34	4.2	0.006	1.23	0.0	0.07	5.37	0.01	2.173	16.97	0.00	4.7	94.9	0.5	-0.93	0.83	0.70	—	4.2	0.007	1.24	0.0	0.05	10.04	0.01	2.049	33.59	0.00	21.9	77.6	0.6	-4.75	1.35	0.89	0.76	—	30198	6153	21	0	0	0	0	logfile
✔	6RTB	4996	2022-05-12	2019-05-22	3.46	3.57	—	3.5	0.009	1.23	0.0	0.07	15.08	0.01	2.122	6.27	2.61	18.9	80.9	0.2	-4.64	0.62	0.79	4.22	3.5	0.006	0.85	0.0	0.05	16.16	0.00	2.105	17.65	0.65	22.1	77.9	0.0	-4.34	0.89	0.63	0.81	4.18	4681	699	10	0	0	0	0	logfile
✔	6XTB	10618	2022-05-12	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.004	1.06	0.0	0.05	7.90	0.00	2.205	9.62	0.00	22.1	77.9	0.0	-5.53	2.43	0.34	0.64	—	1161	235	1	0	0	0	0	logfile
✔	6ZYD	11557	2022-05-16	2020-07-31	3.0	3.62	2.76	3.4	0.017	1.20	0.0	0.12	17.41	0.01	2.269	4.88	0.00	5.1	94.9	0.0	-3.12	0.75	0.77	4.36	3.4	0.059	2.56	0.0	0.17	18.86	0.02	1.730	57.41	12.94	21.7	78.3	0.0	-6.10	1.47	0.79	0.85	3.23	31423	1792	14	0	476	0	14490	logfile
✔	7NNH	12477	2022-05-12	2021-02-24	4.0	5.15	—	4.2	0.004	1.27	0.0	0.05	15.82	0.01	2.066	35.16	0.34	23.0	76.5	0.5	-3.61	0.74	0.80	—	4.2	0.003	1.12	0.0	0.05	16.95	0.00	2.060	28.00	0.34	21.4	78.4	0.2	-2.67	0.75	0.75	0.80	—	5299	637	1	0	0	0	0	logfile
✔	6NYM	0546	2022-05-14	2019-02-11	3.6	4.42	—	4.1	0.005	0.94	0.0	0.06	10.43	0.00	2.260	8.29	0.32	12.6	87.4	0.0	-5.10	0.87	0.78	2.54	4.2	0.008	0.89	0.0	0.05	13.01	0.00	2.115	20.83	0.41	21.5	78.5	0.0	-4.64	1.21	0.87	0.79	2.54	68664	9000	12	0	0	0	0	logfile
✔	6H3J	0134	2022-05-14	2018-07-18	3.7	3.83	—	3.7	0.007	0.87	0.0	0.05	10.17	0.00	2.025	43.43	0.05	23.8	76.2	0.0	-6.63	0.77	0.85	3.89	3.7	0.005	0.65	0.0	0.04	13.39	0.00	1.860	56.31	0.32	21.3	78.7	0.0	-4.95	2.68	0.78	0.86	2.86	20301	2511	3	0	0	0	212	logfile
✔	5ZLU	6934	2022-05-22	2018-03-29	3.6	3.66	—	3.6	0.008	1.26	2.0	0.07	18.68	0.01	0.401	13.59	2.52	18.9	79.1	1.9	-5.90	0.78	0.77	1.74	3.6	0.007	1.01	2.0	0.05	18.91	0.01	1.656	14.56	0.23	20.5	78.7	0.9	-4.73	1.21	0.78	0.79	0.91	150313	6529	60	4596	4	0	0	logfile
✔	6H3i	0133	2022-05-14	2018-07-18	3.5	3.59	—	3.5	0.009	0.92	0.0	0.05	10.08	0.01	2.012	39.59	0.40	21.4	78.4	0.2	-5.64	0.78	0.86	4.47	3.5	0.010	0.93	1.0	0.04	13.26	0.00	2.010	52.82	0.00	21.1	78.8	0.1	-4.42	2.52	0.78	0.87	3.45	20599	2597	3	0	0	0	53	logfile

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