Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6SHS	10204	2021-12-01	2019-08-08	4.4	4.36	—	4.3	0.009	1.02	0.0	0.06	12.04	0.00	2.341	25.68	0.00	21.1	78.9	0.0	-5.87	0.69	0.62	—	4.4	0.003	0.65	0.0	0.05	12.94	0.00	2.245	6.84	0.00	16.4	83.6	0.0	-5.45	1.71	0.73	0.71	—	7068	480	12	0	0	0	3408	logfile
✔	7FG3	31577	2021-12-01	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.23	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.009	0.98	0.0	0.05	16.79	0.01	2.094	23.98	0.30	15.7	83.7	0.6	-3.71	0.78	0.23	0.45	0.29	9054	1166	2	0	0	0	0	logfile
✔	7BZW	30261	2021-12-01	2020-04-28	4.6	7.66	4.73	6.0	0.003	0.82	0.0	0.05	15.82	0.01	2.176	28.88	0.00	19.4	80.6	0.0	-5.59	0.85	0.67	—	6.5	0.003	0.87	0.0	0.06	14.64	0.01	2.267	19.17	0.00	16.2	83.8	0.0	-2.75	1.57	0.93	0.86	—	9756	1212	12	0	0	0	0	logfile
✔	6CU8	7619	2021-12-01	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.2	0.005	0.79	0.0	0.06	12.89	0.00	2.161	16.36	0.65	15.9	84.1	0.0	-3.37	1.79	0.43	0.74	2.58	2880	410	10	0	0	0	0	logfile
✔	7BW7	30229	2021-12-01	2020-04-13	4.1	4.55	4.28	4.4	0.008	1.06	0.0	0.06	16.20	0.01	2.050	40.07	0.00	23.4	76.6	0.0	-5.62	0.73	0.68	—	4.4	0.004	0.82	0.0	0.05	15.22	0.00	2.112	22.19	0.10	15.8	84.2	0.0	-3.98	0.72	0.71	0.65	—	8824	1091	3	0	0	0	0	logfile
✔	6TNF	10531	2021-12-01	2019-12-07	3.8	2.90	3.67	2.7	0.034	1.65	0.0	0.27	15.46	0.01	2.236	8.40	0.00	17.8	81.5	0.7	-5.32	0.60	0.56	—	2.7	0.003	0.83	0.0	0.06	12.92	0.00	2.186	8.27	0.00	15.8	84.2	0.0	-2.26	0.51	0.65	0.63	—	9559	2206	5	0	66	0	0	logfile
✔	7E23	30950	2021-12-01	2021-02-04	3.3	3.62	—	3.6	0.004	0.82	0.0	0.05	14.42	0.01	2.123	14.21	0.00	17.3	82.7	0.0	-3.70	0.70	0.77	2.78	3.6	0.011	1.49	0.0	0.05	16.45	0.01	2.152	14.53	0.30	15.5	84.5	0.0	-3.10	1.12	0.70	0.79	2.23	3133	403	4	0	1	0	0	logfile
✔	6U5H	20646	2021-12-01	2019-08-27	4.0	3.67	—	3.7	0.005	1.07	0.0	0.06	8.74	0.01	2.234	9.36	0.39	13.6	86.4	0.0	-5.23	0.41	0.68	—	3.7	0.014	1.48	1.0	0.05	15.62	0.01	2.118	24.19	0.00	15.4	84.6	0.0	-5.04	0.93	0.42	0.70	—	7326	954	3	0	0	0	0	logfile
✔	6ZRQ	11382	2021-12-01	2020-07-14	3.9	4.06	—	4.2	0.014	1.20	0.0	0.05	12.20	0.00	2.597	20.13	0.00	5.0	95.0	0.0	-4.20	0.64	0.62	3.62	4.2	0.003	0.70	0.0	0.04	12.79	0.00	2.180	20.13	0.00	15.4	84.6	0.0	-5.93	2.13	0.70	0.77	2.95	3816	276	12	0	0	0	1776	logfile
✔	6NY2	8996	2021-12-02	2019-02-10	3.2	3.56	—	3.4	0.007	1.02	0.0	0.05	20.27	0.01	2.266	6.02	0.66	15.6	83.6	0.8	-4.66	0.78	0.81	2.12	3.4	0.006	1.00	0.0	0.04	20.96	0.00	2.199	11.29	0.33	15.1	84.7	0.3	-1.20	0.46	0.78	0.82	1.59	10538	794	4	180	121	0	0	logfile
✔	7KWZ	23059	2021-12-01	2020-12-02	3.2	3.41	—	3.4	0.006	0.80	0.0	0.05	12.48	0.00	2.271	13.15	0.00	7.3	92.7	0.0	-5.51	0.47	0.81	4.47	3.4	0.015	1.11	1.0	0.05	15.67	0.01	2.157	18.82	0.91	15.3	84.7	0.0	-5.49	1.07	0.50	0.85	4.25	4695	695	5	0	0	0	0	logfile
✔	7KPW	22990	2021-12-01	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.8	0.005	0.86	0.0	0.04	6.91	0.00	2.059	5.41	0.00	14.6	84.8	0.6	-1.66	2.04	0.83	0.83	—	4313	865	1	0	0	0	0	logfile
✔	6JBH	9790	2021-12-01	2019-01-25	3.94	4.06	—	4.0	0.007	1.23	0.0	0.07	12.50	0.03	2.260	5.98	0.53	14.3	85.5	0.2	-5.84	0.68	0.81	2.48	4.0	0.004	1.02	0.0	0.05	16.10	0.00	2.215	13.39	0.43	15.1	84.9	0.0	-2.27	1.66	0.68	0.81	1.96	8592	1062	4	0	0	0	0	logfile
✔	7LC9	23270	2021-12-01	2021-01-10	3.2	3.25	—	3.1	0.004	0.72	0.0	0.05	17.46	0.00	1.884	31.60	18.58	13.4	86.6	0.0	-4.15	0.71	0.77	-0.84	3.1	0.009	0.92	0.0	0.05	16.86	0.00	1.984	46.70	2.65	14.8	85.2	0.0	-3.60	0.67	0.70	0.81	0.10	3497	525	12	0	0	0	0	logfile
✔	6SST	10305	2021-12-01	2019-09-09	3.4	3.46	—	3.4	0.009	0.94	0.0	0.07	16.79	0.00	2.430	5.73	2.13	10.1	89.9	0.0	-4.47	0.56	0.80	6.33	3.4	0.005	0.69	0.0	0.05	15.22	0.00	2.342	10.76	0.21	14.6	85.4	0.0	-4.82	0.49	0.60	0.84	5.27	4900	730	10	0	0	0	0	logfile
✔	6L4S	0833	2021-12-01	2019-10-21	3.37	3.47	—	4.0	0.014	1.36	0.0	0.09	10.28	0.01	2.408	7.28	0.00	5.7	94.3	0.0	-3.73	0.28	0.67	4.12	4.1	0.008	0.87	0.0	0.06	15.50	0.00	2.214	12.64	0.44	14.5	85.5	0.0	-3.63	3.12	0.34	0.74	2.16	2268	330	6	0	0	0	0	logfile
✔	7M65	23689	2021-12-01	2021-03-25	4.1	4.11	—	4.3	0.009	1.40	0.0	0.10	12.05	0.00	2.392	33.63	0.00	17.6	82.4	0.0	-6.09	0.52	0.73	—	4.2	0.004	0.88	0.0	0.05	11.88	0.00	2.144	20.38	0.00	14.5	85.5	0.0	-6.10	4.44	0.52	0.72	—	2025	275	10	0	5	0	0	logfile
✔	7AKV	11814	2021-12-01	2020-10-02	3.6	3.04	3.41	3.7	0.004	0.65	0.0	0.04	14.25	0.00	2.005	76.42	0.16	17.7	82.2	0.1	-4.19	0.81	0.82	2.44	3.7	0.003	0.57	0.0	0.04	16.21	0.00	2.018	70.79	0.16	14.4	85.5	0.1	-3.32	0.32	0.81	0.82	1.88	6201	799	2	0	0	0	245	logfile
✔	7BZY	30263	2021-12-01	2020-04-29	3.7	5.07	3.67	2.9	0.005	1.03	0.0	0.05	7.60	0.00	2.175	11.89	0.00	15.0	84.6	0.3	-5.26	0.62	0.47	—	3.4	0.003	0.80	0.0	0.05	5.52	0.00	2.116	12.77	0.00	14.4	85.6	0.0	-2.69	1.26	0.85	0.74	—	6169	1260	3	0	0	0	0	logfile
✔	6BGJ	7096	2021-12-01	2017-10-28	3.8	3.68	3.27	3.6	0.008	1.21	0.0	0.06	10.72	0.01	2.142	10.55	0.00	13.7	85.7	0.6	-5.82	0.47	0.59	1.68	3.6	0.005	0.92	0.0	0.05	14.36	0.01	2.037	19.52	0.14	13.7	85.9	0.4	-1.54	1.39	0.50	0.61	1.43	7418	980	4	0	2	0	0	logfile

• ← previous
• Page 3 of 85
• next →