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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6M02 | 30028 | 2024-03-17 | 2020-02-19 | 3.2 | 3.49 | 3.90 | 3.9 | 0.006 | 0.96 | 0.0 | 0.05 | 16.35 | 0.01 | 2.263 | 6.38 | 1.64 | 7.0 | 93.0 | 0.0 | -6.29 | 0.60 | 0.70 | 1.57 | 3.9 | 0.002 | 0.68 | 0.0 | 0.04 | 17.28 | 0.00 | 2.296 | 9.33 | 3.71 | 3.2 | 96.8 | 0.0 | -2.03 | 1.19 | 0.61 | 0.71 | 1.42 | 18935 | 2345 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UiX | 20790 | 2024-03-24 | 2019-10-01 | 3.5 | 4.38 | — | 3.7 | 0.009 | 0.96 | 0.0 | 0.05 | 13.69 | 0.01 | 2.204 | 8.14 | 0.00 | 4.0 | 96.0 | 0.0 | -3.80 | 0.68 | 0.83 | 1.92 | 3.7 | 0.004 | 0.63 | 0.0 | 0.04 | 14.61 | 0.00 | 2.269 | 12.16 | 1.90 | 2.8 | 97.2 | 0.0 | 2.59 | 1.51 | 0.68 | 0.83 | 1.83 | 44198 | 6050 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 7AE3 | 11738 | 2024-03-24 | 2020-09-17 | 3.1 | 3.92 | 3.23 | 3.0 | 0.008 | 0.97 | 1.0 | 0.06 | 11.23 | 0.01 | 1.688 | 3.45 | 0.37 | 4.2 | 95.7 | 0.1 | -4.00 | 0.85 | 0.76 | 1.37 | 3.2 | 0.003 | 0.64 | 0.0 | 0.04 | 13.79 | 0.00 | 1.962 | 9.22 | 1.56 | 3.7 | 96.3 | 0.0 | 0.01 | 1.57 | 0.89 | 0.86 | 2.28 | 42525 | 5232 | 27 | 44 | 9 | 0 | 0 | logfile |
✔ | 8EYi | 28690 | 2024-03-17 | 2022-10-27 | 2.7 | 3.30 | 2.69 | 3.1 | 0.017 | 0.98 | 0.0 | 0.05 | 16.32 | 0.01 | 2.204 | 10.69 | 2.06 | 2.0 | 98.0 | 0.0 | 0.27 | 0.80 | 0.81 | 2.89 | 3.1 | 0.003 | 0.54 | 0.0 | 0.04 | 16.20 | 0.00 | 2.180 | 10.00 | 2.12 | 1.8 | 98.2 | 0.0 | 0.46 | 0.23 | 0.80 | 0.81 | 3.07 | 16252 | 2172 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7E51 | 30989 | 2024-03-19 | 2021-02-16 | 3.23 | 3.40 | — | 3.4 | 0.005 | 0.69 | 0.0 | 0.05 | 14.04 | 0.00 | 2.055 | 9.93 | 0.00 | 6.1 | 93.7 | 0.2 | -3.14 | 0.81 | 0.84 | 2.86 | 3.4 | 0.002 | 0.51 | 0.0 | 0.04 | 15.32 | 0.00 | 2.020 | 8.82 | 1.19 | 3.4 | 96.6 | 0.0 | 0.59 | 1.56 | 0.81 | 0.86 | 2.05 | 25032 | 3384 | 16 | 0 | 24 | 0 | 0 | logfile |
✔ | 7JPQ | 22419 | 2024-03-16 | 2020-08-09 | 3.5 | 3.56 | — | 3.5 | 0.008 | 1.14 | 0.0 | 0.06 | 14.61 | 0.01 | 2.088 | 2.16 | 0.00 | 3.0 | 97.0 | 0.0 | -2.05 | 0.71 | 0.81 | 2.78 | 3.5 | 0.002 | 0.51 | 0.0 | 0.04 | 16.12 | 0.00 | 1.987 | 4.25 | 1.34 | 2.8 | 97.2 | 0.0 | 0.67 | 0.52 | 0.73 | 0.82 | 1.80 | 13863 | 1691 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 7L2S | 23139 | 2024-03-18 | 2020-12-17 | 2.71 | 3.03 | 2.68 | 3.0 | 0.007 | 0.95 | 0.0 | 0.25 | 12.78 | 0.00 | 2.157 | 0.85 | 0.68 | 6.0 | 93.9 | 0.0 | 0.35 | 0.65 | 0.89 | 4.03 | 3.0 | 0.004 | 0.62 | 0.0 | 0.04 | 15.41 | 0.00 | 2.190 | 3.27 | 1.44 | 5.9 | 94.1 | 0.0 | 1.09 | 0.99 | 0.62 | 0.89 | 3.18 | 20579 | 2506 | 8 | 0 | 9 | 0 | 0 | logfile |
✔ | 7TVZ | 26142 | 2024-03-17 | 2022-02-06 | 3.6 | 3.77 | — | 3.8 | 0.005 | 0.61 | 0.0 | 0.04 | 14.94 | 0.00 | 2.203 | 4.11 | 0.00 | 2.8 | 97.2 | 0.0 | 0.35 | 0.68 | 0.75 | 2.02 | 3.8 | 0.003 | 0.59 | 0.0 | 0.04 | 15.68 | 0.00 | 2.162 | 6.15 | 1.55 | 2.6 | 97.4 | 0.0 | 0.49 | 2.29 | 0.72 | 0.81 | 1.85 | 18659 | 2340 | 7 | 0 | 9 | 8 | 0 | logfile |
✔ | 6oGY | 20059 | 2024-03-16 | 2019-04-03 | 3.4 | 3.58 | — | 3.7 | 0.006 | 0.81 | 0.0 | 0.05 | 15.78 | 0.01 | 2.283 | 3.56 | 0.18 | 3.8 | 96.1 | 0.0 | -5.60 | 0.41 | 0.85 | 2.69 | 3.7 | 0.004 | 0.62 | 1.0 | 0.04 | 17.37 | 0.00 | 2.189 | 6.22 | 2.23 | 2.8 | 97.2 | 0.0 | -2.03 | 0.42 | 0.38 | 0.84 | 1.94 | 74364 | 9081 | 13 | 6 | 1 | 0 | 0 | logfile |
✔ | 7L2R | 23138 | 2024-03-18 | 2020-12-17 | 3.3 | 3.62 | 3.28 | 3.5 | 0.008 | 0.92 | 1.0 | 0.25 | 13.32 | 0.00 | 2.112 | 0.59 | 0.35 | 6.6 | 93.3 | 0.1 | -0.23 | 0.65 | 0.87 | 3.13 | 3.5 | 0.002 | 0.60 | 0.0 | 0.04 | 15.31 | 0.00 | 2.161 | 4.49 | 1.43 | 6.7 | 93.3 | 0.0 | 1.19 | 0.65 | 0.65 | 0.88 | 2.12 | 21377 | 2611 | 15 | 0 | 9 | 4 | 0 | logfile |
✔ | 7RMi | 24572 | 2024-03-11 | 2021-07-27 | 3.2 | 3.78 | 3.15 | 3.7 | 0.004 | 0.84 | 0.0 | 0.05 | 12.68 | 0.01 | 2.296 | 4.36 | 0.00 | 3.4 | 96.6 | 0.0 | -1.03 | 0.69 | 0.72 | 2.32 | 3.7 | 0.003 | 0.58 | 0.0 | 0.04 | 14.49 | 0.00 | 2.202 | 7.94 | 1.71 | 2.8 | 97.2 | 0.0 | 0.64 | 0.96 | 0.66 | 0.77 | 2.11 | 7205 | 960 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7TUB | 26131 | 2024-03-23 | 2022-02-02 | 3.6 | 3.87 | — | 3.7 | 0.005 | 0.70 | 2.0 | 0.04 | 16.00 | 0.00 | 1.797 | 5.45 | 0.49 | 4.0 | 95.9 | 0.1 | -0.97 | 0.66 | 0.86 | 2.16 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 16.47 | 0.00 | 1.650 | 6.14 | 2.14 | 3.9 | 96.1 | 0.0 | 0.59 | 0.33 | 0.65 | 0.85 | 1.52 | 35877 | 4650 | 25 | 0 | 24 | 8 | 0 | logfile |
✔ | 6L3V | 0827 | 2024-03-18 | 2019-10-15 | 2.63 | 2.90 | 2.72 | 2.9 | 0.009 | 0.92 | 0.0 | 0.04 | 24.54 | 0.01 | 2.218 | 1.00 | 5.45 | 0.5 | 99.5 | 0.0 | -5.00 | 0.57 | 0.85 | 3.54 | 2.9 | 0.002 | 0.58 | 0.0 | 0.03 | 16.83 | 0.01 | 2.187 | 2.41 | 2.32 | 0.6 | 99.4 | 0.0 | 2.36 | 1.03 | 0.55 | 0.85 | 2.85 | 19416 | 1206 | 12 | 0 | 6 | 0 | 9528 | logfile |
✔ | 6A90 | 6995 | 2024-03-15 | 2018-07-11 | 2.8 | 2.90 | — | 2.9 | 0.011 | 1.23 | 0.0 | 0.07 | 12.07 | 0.01 | 2.302 | 3.60 | 1.75 | 7.6 | 92.1 | 0.3 | -5.83 | 0.60 | 0.83 | 3.90 | 2.9 | 0.003 | 0.68 | 0.0 | 0.04 | 15.57 | 0.00 | 2.235 | 5.28 | 3.32 | 6.5 | 93.5 | 0.0 | 0.24 | 1.27 | 0.62 | 0.86 | 3.11 | 11085 | 1380 | 5 | 0 | 8 | 0 | 0 | logfile |
✔ | 8iP3 | 35630 | 2024-03-15 | 2023-03-14 | 2.6 | 3.21 | 2.64 | 3.0 | 0.002 | 0.42 | 0.0 | 0.04 | 10.76 | 0.00 | 2.255 | 5.46 | 0.00 | 1.9 | 98.1 | 0.0 | 3.79 | 0.76 | 0.84 | 3.68 | 3.0 | 0.003 | 0.47 | 0.0 | 0.04 | 13.72 | 0.00 | 2.265 | 6.81 | 1.20 | 1.9 | 98.1 | 0.0 | 3.60 | 0.32 | 0.71 | 0.81 | 3.66 | 12868 | 1595 | 10 | 0 | 13 | 0 | 0 | logfile |
✔ | 6LVB | 0988 | 2024-03-20 | 2020-02-02 | 2.8 | 2.90 | 2.76 | 2.9 | 0.008 | 0.90 | 0.0 | 0.06 | 9.15 | 0.01 | 1.914 | 2.94 | 0.27 | 4.6 | 95.4 | 0.0 | -2.88 | 0.80 | 0.89 | 6.02 | 2.9 | 0.003 | 0.58 | 0.0 | 0.05 | 14.49 | 0.00 | 1.971 | 5.27 | 1.61 | 3.8 | 96.2 | 0.0 | -0.34 | 1.20 | 0.80 | 0.90 | 5.00 | 28276 | 3544 | 16 | 0 | 4 | 4 | 0 | logfile |
✔ | 6LiD | 0904 | 2024-03-17 | 2019-12-10 | 2.7 | 2.74 | — | 2.7 | 0.007 | 1.00 | 0.0 | 0.06 | 15.03 | 0.01 | 1.890 | 3.67 | 1.96 | 4.8 | 95.1 | 0.1 | -4.84 | 0.62 | 0.74 | 3.13 | 2.7 | 0.003 | 0.70 | 0.0 | 0.05 | 16.16 | 0.00 | 2.194 | 6.44 | 2.64 | 4.3 | 95.7 | 0.0 | 0.09 | 1.25 | 0.72 | 0.87 | 2.87 | 17964 | 2162 | 22 | 0 | 26 | 246 | 0 | logfile |
✔ | 7W7E | 32342 | 2024-03-11 | 2021-12-04 | 3.4 | 3.51 | — | 3.9 | 0.004 | 0.66 | 2.0 | 0.05 | 14.41 | 0.00 | 2.120 | 8.28 | 0.32 | 8.8 | 91.2 | 0.0 | -1.54 | 0.68 | 0.82 | 2.16 | 3.9 | 0.004 | 0.66 | 0.0 | 0.04 | 16.68 | 0.00 | 2.196 | 9.34 | 3.14 | 6.5 | 93.5 | 0.0 | -0.73 | 0.98 | 0.68 | 0.83 | 1.72 | 8524 | 1090 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7L8F | 23232 | 2024-03-16 | 2020-12-31 | 3.66 | 3.77 | 3.54 | 3.7 | 0.022 | 1.69 | 0.0 | 0.14 | 11.25 | 0.02 | 2.118 | 1.45 | 0.00 | 1.7 | 98.3 | 0.0 | 0.91 | 0.70 | 0.79 | 2.06 | 3.7 | 0.003 | 0.68 | 0.0 | 0.05 | 13.72 | 0.00 | 2.148 | 7.87 | 2.50 | 3.4 | 96.6 | 0.0 | -0.01 | 2.59 | 0.72 | 0.82 | 2.58 | 15840 | 1705 | 28 | 0 | 320 | 0 | 0 | logfile |
✔ | 6iDF | 9648 | 2024-03-15 | 2018-09-09 | 2.7 | 2.83 | — | 2.9 | 0.008 | 1.17 | 0.0 | 0.06 | 15.40 | 0.01 | 2.279 | 3.96 | 0.44 | 6.8 | 93.0 | 0.1 | -4.02 | 0.66 | 0.82 | 3.23 | 2.9 | 0.003 | 0.68 | 0.0 | 0.04 | 15.94 | 0.00 | 2.118 | 6.23 | 3.16 | 6.1 | 93.9 | 0.0 | -0.51 | 1.26 | 0.67 | 0.85 | 2.49 | 11188 | 1363 | 15 | 0 | 28 | 0 | 0 | logfile |