Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6LN7	0926	2022-12-11	2019-12-28	2.8	2.90	2.71	2.9	0.005	0.65	0.0	0.04	11.73	0.00	2.101	5.77	0.00	2.3	97.7	0.0	-3.93	0.70	0.85	3.69	2.9	0.002	0.56	0.0	0.04	16.48	0.00	2.243	6.34	1.39	2.0	98.0	0.0	0.79	0.48	0.69	0.86	2.71	7840	1011	1	0	4	0	0	logfile
✔	6LXE	30006	2022-12-12	2020-02-10	4.2	4.23	—	4.0	0.002	0.59	0.0	0.04	15.29	0.00	2.030	17.23	0.14	8.7	91.3	0.0	-3.22	0.85	0.70	—	3.9	0.004	0.82	0.0	0.04	14.71	0.00	2.156	27.68	0.14	10.7	89.3	0.0	-2.32	1.70	0.85	0.72	—	6519	813	4	0	2	0	0	logfile
✔	6SKM	10228	2022-12-12	2019-08-16	4.9	5.09	4.66	4.9	0.004	0.64	0.0	0.04	9.23	0.00	1.449	9.87	0.18	1.4	98.6	0.0	-1.03	0.68	0.74	—	4.9	0.004	0.79	0.0	0.05	12.82	0.01	2.123	22.27	0.18	3.4	96.6	0.0	0.10	2.75	0.70	0.80	—	10336	1320	6	0	0	0	0	logfile
✔	6W64	21552	2022-12-12	2020-03-16	3.9	4.06	—	4.0	0.003	0.58	0.0	0.04	13.75	0.00	2.196	9.73	1.29	7.0	92.9	0.1	0.30	0.74	0.70	0.86	4.0	0.003	0.72	0.0	0.04	17.84	0.00	2.090	19.21	0.65	8.6	91.4	0.0	-0.56	0.93	0.75	0.72	1.16	8505	928	3	56	0	0	0	logfile
✔	6LXD	30005	2022-12-13	2020-02-10	3.9	3.67	—	3.5	0.002	0.55	0.0	0.04	13.46	0.00	2.239	15.47	0.70	9.3	90.7	0.0	-3.27	0.87	0.79	0.87	3.5	0.003	0.76	0.0	0.04	15.19	0.00	2.137	17.74	0.12	9.0	91.0	0.0	-1.58	0.67	0.88	0.79	0.94	9435	963	5	72	2	0	0	logfile
✔	6VRB	21366	2022-12-12	2020-02-07	3.0	3.08	—	3.1	0.009	1.20	2.0	0.08	14.70	0.01	1.877	16.14	3.12	7.9	92.1	0.0	-4.13	0.74	0.77	2.24	3.1	0.002	0.60	0.0	0.04	18.04	0.00	2.211	5.64	2.36	5.4	94.6	0.0	0.45	1.79	0.79	0.86	2.01	11581	1260	3	52	0	0	0	logfile
✔	6M67	30115	2022-12-13	2020-03-13	3.6	3.14	—	4.0	0.006	1.14	0.0	0.06	14.95	0.01	2.247	6.79	0.00	10.3	89.7	0.0	-4.86	0.54	0.64	1.39	3.9	0.003	0.84	0.0	0.05	17.09	0.00	2.035	17.10	0.59	9.7	90.3	0.0	-1.38	0.82	0.54	0.64	1.33	14938	1855	7	0	0	0	0	logfile
✔	6SLQ	10239	2022-12-12	2019-08-20	4.4	4.54	4.34	4.5	0.012	0.81	0.0	0.04	9.23	0.01	1.359	11.91	0.18	1.1	98.9	0.0	-1.02	0.63	0.72	—	4.5	0.004	0.80	0.0	0.05	13.10	0.01	2.099	16.65	0.00	4.1	95.9	0.0	-0.14	1.72	0.65	0.77	—	10336	1320	6	0	0	0	0	logfile
✔	7A91	11681	2022-12-11	2020-09-01	3.6	3.74	3.57	3.7	0.006	0.77	0.0	0.05	15.20	0.01	2.194	3.55	0.81	4.9	95.1	0.0	-2.81	0.75	0.82	2.55	3.7	0.002	0.56	0.0	0.04	16.32	0.00	2.241	6.36	0.40	2.8	97.2	0.0	-0.56	2.46	0.75	0.81	2.01	6915	839	5	0	10	0	0	logfile
✔	6V9X	21129	2022-12-14	2019-12-16	3.3	3.52	3.34	3.5	0.005	0.90	0.0	0.05	15.21	0.01	2.280	3.65	1.24	3.9	96.1	0.0	-5.84	0.74	0.80	1.79	3.5	0.004	0.65	0.0	0.04	16.21	0.00	2.124	9.83	0.52	4.2	95.8	0.0	0.67	1.36	0.75	0.83	2.05	18084	2284	4	0	0	0	0	logfile
✔	6WUH	21913	2022-12-11	2020-05-04	3.4	3.72	—	3.6	0.003	0.67	0.0	0.04	14.69	0.01	2.129	9.08	5.42	12.5	87.5	0.0	-5.07	0.67	0.80	2.01	3.7	0.004	0.75	0.0	0.04	15.53	0.01	2.149	9.60	0.50	11.9	88.1	0.0	-2.51	0.52	0.67	0.81	1.90	7790	1037	3	0	0	0	0	logfile
✔	6VK3	21224	2022-12-11	2020-01-18	3.7	3.81	—	3.8	0.006	0.93	0.0	0.06	14.84	0.01	2.013	12.45	0.00	5.1	94.8	0.1	-2.61	0.68	0.80	1.94	3.8	0.003	0.61	0.0	0.04	16.83	0.00	2.209	8.22	0.24	5.2	94.8	0.0	0.27	1.63	0.67	0.79	1.62	7784	954	2	0	7	0	0	logfile
✔	6VJY	21220	2022-12-11	2020-01-18	4.3	4.47	—	4.3	0.003	0.64	0.0	0.04	14.40	0.00	2.223	12.44	0.13	4.1	95.9	0.0	-1.62	0.70	0.81	—	4.3	0.004	0.72	0.0	0.04	14.35	0.00	2.135	11.61	0.00	4.9	95.1	0.0	1.69	0.86	0.70	0.81	—	7266	883	2	0	0	0	0	logfile
✔	6UA5	20706	2022-12-14	2019-09-10	3.79	3.78	3.59	3.8	0.014	1.50	8.0	0.07	14.10	0.01	2.192	9.01	8.52	4.9	95.1	0.0	-4.43	0.62	0.81	3.37	3.8	0.004	0.75	0.0	0.05	16.48	0.00	2.131	20.04	1.22	6.1	93.9	0.0	-1.46	1.61	0.62	0.81	1.76	23080	3008	16	0	16	0	0	logfile
✔	6WUJ	21914	2022-12-11	2020-05-04	3.7	3.85	—	3.8	0.007	0.93	0.0	0.05	13.20	0.01	2.059	10.18	0.15	16.1	83.8	0.1	-5.66	0.71	0.82	3.23	3.8	0.003	0.71	0.0	0.04	15.11	0.00	2.138	9.28	0.15	10.0	90.0	0.0	-2.05	0.55	0.71	0.82	2.56	6699	884	3	0	0	0	0	logfile
✔	6W17	21502	2022-12-15	2020-03-03	3.9	3.99	3.93	3.9	0.003	0.59	0.0	0.04	12.66	0.00	1.894	5.91	0.00	4.9	95.1	0.0	-3.15	0.87	0.82	1.39	3.9	0.005	0.76	0.0	0.04	15.33	0.00	1.855	12.80	0.74	6.7	93.3	0.0	-0.88	0.67	0.89	0.86	1.78	27396	3518	23	0	12	0	0	logfile
✔	6XYE	10649	2022-12-12	2020-01-30	4.3	4.37	4.28	4.3	0.010	1.29	0.0	0.09	10.03	0.01	2.315	11.42	0.00	4.7	95.3	0.0	-3.09	0.71	0.69	—	4.3	0.003	0.75	0.0	0.05	12.45	0.00	2.159	14.59	0.00	8.0	92.0	0.0	-1.37	1.39	0.72	0.69	—	9834	1293	6	0	0	0	0	logfile
✔	6X5A	22047	2022-12-13	2020-05-25	4.36	4.99	—	4.3	0.007	0.89	0.0	0.05	27.01	0.01	2.107	17.81	1.66	6.2	93.7	0.2	-1.94	0.90	0.80	—	4.3	0.005	0.70	0.0	0.04	26.98	0.00	2.060	16.33	0.00	6.2	93.8	0.0	0.66	0.89	0.91	0.83	—	14963	1123	11	290	1	0	0	logfile
✔	6U8S	20691	2022-12-14	2019-09-05	3.14	3.91	3.03	3.7	0.012	1.36	0.0	0.07	14.27	0.01	2.257	9.77	9.06	5.1	94.9	0.0	-4.07	0.60	0.79	2.61	3.7	0.004	0.83	0.0	0.05	15.57	0.00	2.154	18.24	0.63	5.1	94.9	0.0	-1.95	0.69	0.59	0.78	2.52	23080	3008	16	0	16	0	0	logfile
✔	6U5N	20650	2022-12-13	2019-08-28	3.2	3.32	—	3.3	0.006	0.76	0.0	0.05	14.13	0.01	1.907	2.80	0.15	4.8	95.2	0.0	-3.09	0.72	0.84	2.62	3.3	0.004	0.52	0.0	0.05	15.88	0.00	2.097	5.80	0.44	3.1	96.9	0.0	0.71	0.52	0.67	0.84	2.32	13262	1776	24	0	24	8	0	logfile

• ← previous
• Page 3 of 443
• next →