Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K5Y	22684	2023-04-25	2020-09-17	2.76	3.18	—	3.1	0.004	0.65	0.0	0.04	27.13	0.00	2.108	7.00	0.00	1.4	98.6	0.0	1.74	0.77	0.81	4.49	3.1	0.004	0.58	0.0	0.04	27.58	0.00	2.155	6.64	1.55	1.9	98.1	0.0	1.86	1.13	0.78	0.85	4.01	18258	1297	13	394	0	0	0	logfile
✔	7PH4	13406	2023-04-21	2021-08-16	2.8	3.02	2.85	3.0	0.041	1.53	11.0	0.30	15.88	0.01	2.022	8.53	3.18	4.5	95.4	0.1	0.17	0.69	0.86	2.98	3.0	0.003	0.57	0.0	0.04	18.45	0.00	1.959	8.16	2.15	2.9	97.1	0.0	1.59	1.05	0.65	0.86	2.75	10846	1378	10	0	10	4	0	logfile
✔	7XK7	33246	2023-04-23	2022-04-19	2.9	3.16	2.96	3.2	0.008	1.12	11.0	0.06	15.08	0.01	1.978	5.02	0.70	2.5	97.4	0.1	-2.49	0.68	0.88	4.09	3.2	0.003	0.59	0.0	0.04	16.45	0.00	2.181	5.85	1.47	2.7	97.3	0.0	0.21	1.31	0.71	0.90	3.72	15186	1921	14	0	13	35	0	logfile
✔	7ZEP	14691	2023-04-22	2022-03-31	3.2	3.43	3.22	3.5	0.002	0.48	0.0	0.04	14.25	0.00	2.231	5.23	0.00	1.7	98.3	0.0	0.22	0.71	0.80	3.10	3.5	0.003	0.54	0.0	0.04	15.93	0.00	2.176	6.61	0.14	2.7	97.3	0.0	1.20	1.12	0.72	0.83	2.54	13324	1654	4	0	2	0	0	logfile
✔	7C2K	30275	2023-04-21	2020-05-07	2.93	3.24	3.00	3.1	0.007	0.67	0.0	0.04	13.79	0.00	2.256	7.20	0.00	4.5	95.5	0.0	-2.91	0.78	0.89	4.22	3.1	0.003	0.53	0.0	0.04	15.41	0.00	2.215	5.85	1.90	4.5	95.5	0.0	-0.44	0.92	0.75	0.89	3.75	10692	1256	7	31	3	0	0	logfile
✔	6WDR	21644	2023-04-27	2020-04-01	3.7	3.72	—	3.4	0.013	1.27	2.0	0.07	19.74	0.01	2.181	8.79	1.35	11.7	88.2	0.1	-5.01	0.85	0.81	1.85	3.4	0.006	0.72	0.0	0.04	19.35	0.00	2.049	15.61	0.55	7.1	92.8	0.0	-2.66	1.85	0.85	0.82	1.76	74473	4984	32	1647	0	0	0	logfile
✔	6ZH6	11215	2023-04-29	2020-06-21	3.93	4.77	4.04	4.1	0.003	0.68	0.0	0.04	14.44	0.00	2.170	12.73	0.00	8.0	91.9	0.1	-2.74	0.90	0.83	1.31	4.1	0.003	0.68	0.0	0.04	15.61	0.00	2.224	10.74	0.06	7.0	93.0	0.0	-0.08	1.14	0.90	0.84	1.02	29201	3677	2	0	28	0	0	logfile
✔	7TF3	25860	2023-04-26	2022-01-06	2.25	2.94	—	2.8	0.005	0.82	0.0	0.06	13.08	0.01	2.287	3.03	0.00	2.0	98.0	0.0	0.09	0.79	0.83	3.63	2.7	0.004	0.60	0.0	0.05	15.15	0.00	2.157	6.64	1.44	2.4	97.6	0.0	0.72	1.86	0.79	0.84	3.55	21873	2703	24	0	56	0	0	logfile
✔	7F4G	31450	2023-04-28	2021-06-18	2.78	3.30	—	3.2	0.017	1.11	4.0	0.07	14.67	0.01	1.898	14.95	1.43	8.7	91.0	0.3	-3.97	0.69	0.81	3.30	3.2	0.003	0.67	0.0	0.05	16.84	0.00	2.136	11.71	2.53	5.5	94.5	0.0	-0.41	1.19	0.63	0.76	2.44	27957	3491	17	0	5	0	0	logfile
✔	8DM4	27526	2023-04-20	2022-07-08	2.45	2.88	2.45	2.8	0.006	0.90	0.0	0.06	13.13	0.01	2.259	4.06	0.23	4.1	95.9	0.0	-0.05	0.69	0.81	4.67	2.9	0.003	0.60	0.0	0.04	15.96	0.00	2.258	9.27	1.83	3.7	96.3	0.0	0.36	1.53	0.67	0.82	5.08	4018	497	5	0	6	0	0	logfile
✔	7S8V	24927	2023-04-22	2021-09-20	3.73	4.42	—	3.9	0.004	0.65	0.0	0.09	12.46	0.00	2.098	5.61	0.14	7.0	93.0	0.0	-3.48	0.68	0.64	0.04	3.9	0.003	0.68	0.0	0.04	14.49	0.00	1.955	15.73	0.00	9.4	90.6	0.0	-2.21	1.59	0.70	0.71	0.69	12502	782	7	0	12	0	6045	logfile
✔	7N0D	24104	2023-04-26	2021-05-25	2.5	3.26	—	3.2	0.005	0.85	0.0	0.05	13.20	0.01	2.032	4.21	0.00	1.1	98.9	0.0	-2.65	0.72	0.78	4.49	3.2	0.003	0.56	0.0	0.04	14.89	0.00	2.000	6.58	0.63	3.5	96.5	0.0	-0.44	1.18	0.71	0.77	3.98	21846	2572	26	76	28	4	0	logfile
✔	7YQW	34037	2023-04-27	2022-08-08	3.51	3.86	3.56	3.8	0.004	0.64	0.0	0.05	13.58	0.00	1.820	9.01	0.18	7.7	92.2	0.0	-1.45	0.79	0.84	2.69	3.8	0.005	0.66	0.0	0.05	14.89	0.00	2.120	6.84	0.18	8.2	91.8	0.0	-1.71	0.33	0.79	0.85	2.70	25422	3126	21	0	69	0	0	logfile
✔	8DLV	27517	2023-04-20	2022-07-08	3.11	3.78	3.18	3.5	0.006	0.88	0.0	0.06	13.45	0.01	2.311	2.66	0.29	1.5	98.5	0.0	-0.25	0.82	0.85	2.77	3.5	0.004	0.59	0.0	0.04	15.27	0.00	2.198	8.75	0.14	2.6	97.4	0.0	1.75	0.62	0.83	0.87	2.31	6553	797	4	0	7	0	0	logfile
✔	7XHA	33192	2023-04-21	2022-04-07	3.35	3.57	3.29	3.5	0.008	1.06	4.0	0.07	11.41	0.01	1.860	7.27	0.28	4.7	95.2	0.1	-3.53	0.69	0.78	2.40	3.5	0.003	0.62	0.0	0.04	15.15	0.00	1.117	8.85	0.19	3.7	96.3	0.0	0.52	1.24	0.72	0.82	2.12	10102	1270	5	0	3	0	0	logfile
✔	7TEW	25853	2023-04-20	2022-01-06	3.52	4.17	—	3.8	0.005	0.85	0.0	0.06	13.32	0.01	2.344	2.89	0.14	1.4	98.6	0.0	0.00	0.82	0.82	2.55	3.8	0.003	0.62	0.0	0.04	15.64	0.00	2.219	10.23	0.00	2.6	97.4	0.0	1.68	1.58	0.83	0.84	2.14	6555	797	4	0	7	0	0	logfile
✔	7XNR	33324	2023-04-27	2022-04-29	3.49	3.73	3.52	3.7	0.004	0.63	0.0	0.05	13.40	0.00	2.085	8.92	0.00	7.2	92.8	0.0	-1.28	0.75	0.73	1.89	3.7	0.003	0.61	0.0	0.04	15.14	0.00	2.164	8.11	0.28	5.9	94.1	0.0	-1.05	0.69	0.80	0.84	1.90	26460	3285	21	0	57	0	0	logfile
✔	7MLV	23911	2023-04-23	2021-04-29	4.1	4.82	—	3.9	0.005	1.02	0.0	0.06	10.90	0.01	2.168	5.10	0.00	7.1	92.9	0.0	-5.14	0.62	0.41	—	3.9	0.014	1.03	0.0	0.05	12.11	0.01	2.077	29.77	0.00	11.6	88.4	0.0	-3.33	1.72	0.70	0.70	—	15055	1919	16	0	22	0	0	logfile
✔	7THM	25898	2023-04-24	2022-01-11	3.18	3.44	—	3.4	0.002	0.45	0.0	0.04	13.35	0.00	1.713	3.23	0.00	5.9	94.1	0.0	-0.75	0.68	0.73	2.05	3.4	0.003	0.51	0.0	0.04	14.72	0.00	1.970	5.41	0.10	6.8	93.2	0.0	-1.19	1.18	0.68	0.75	2.02	18260	1150	6	0	4	0	9045	logfile
✔	7SY6	25518	2023-04-20	2021-11-24	2.81	3.51	—	3.2	0.005	0.86	0.0	0.06	13.46	0.01	2.296	2.58	0.14	2.3	97.7	0.0	-0.71	0.83	0.86	3.13	3.2	0.004	0.67	0.0	0.04	16.01	0.00	2.202	9.30	2.57	1.5	98.5	0.0	1.69	0.61	0.82	0.86	2.71	6553	797	4	0	7	0	0	logfile

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