Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6JP5	9866	2021-08-09	2019-03-25	2.9	3.03	—	3.1	0.016	1.53	4.0	0.12	14.54	0.01	1.921	28.19	6.11	7.7	91.7	0.6	-3.65	0.56	0.62	2.05	3.0	0.006	0.80	0.0	0.05	15.98	0.00	2.132	8.06	2.47	5.6	94.4	0.0	-0.64	0.88	0.68	0.85	1.95	22068	2694	7	0	39	0	0	logfile
✔	6CRX	7575	2021-08-09	2018-03-19	3.9	4.05	4.09	3.9	0.010	1.07	1.0	0.06	9.43	0.01	2.208	7.00	0.18	6.8	93.2	0.0	-3.73	0.76	0.75	1.86	3.9	0.004	0.69	0.0	0.05	13.14	0.00	2.103	13.84	0.40	8.2	91.8	0.0	-1.33	0.79	0.76	0.76	1.21	26012	3203	6	0	74	0	0	logfile
✔	3JCi	6555	2021-08-12	2015-12-13	2.9	3.14	—	3.1	0.010	0.91	0.0	0.05	8.65	0.01	2.239	18.52	0.00	2.1	97.3	0.5	-2.08	0.75	0.85	5.77	3.1	0.003	0.65	0.0	0.04	16.06	0.00	2.233	6.20	1.54	2.5	97.5	0.0	-0.70	0.70	0.69	0.85	4.69	93420	11400	60	0	0	0	0	logfile
✔	6S6U	10106	2021-08-11	2019-07-03	3.5	3.61	3.48	3.6	0.004	0.54	0.0	0.46	13.31	0.00	2.058	5.97	0.44	3.4	96.6	0.0	-2.83	0.80	0.86	2.14	3.6	0.005	0.61	0.0	0.04	15.09	0.00	2.082	6.68	0.22	4.6	95.4	0.0	-0.37	0.53	0.81	0.87	1.99	82978	10720	20	0	24	0	0	logfile
✔	5TC1	8397	2021-08-08	2016-09-13	3.6	3.60	—	3.6	0.006	0.87	0.0	0.08	18.34	0.01	1.126	33.79	0.27	3.3	96.7	0.0	-3.80	0.19	0.77	4.30	3.6	0.005	0.63	0.0	0.04	17.04	0.00	2.182	7.25	0.45	5.4	94.6	0.0	-0.60	0.72	0.21	0.84	2.91	15393	1352	10	242	0	0	0	logfile
✔	6VBV	21145	2021-08-10	2019-12-19	3.5	3.57	3.40	3.5	0.004	0.71	6.0	0.05	15.13	0.00	2.070	12.68	0.72	7.2	92.7	0.1	-3.09	0.67	0.77	2.13	3.5	0.010	1.08	2.0	0.05	17.04	0.01	2.078	12.57	0.14	7.0	93.0	0.0	-0.87	2.57	0.70	0.79	1.79	31676	4000	11	0	3	0	0	logfile
✔	6NZW	0562	2021-08-10	2019-02-14	3.21	3.76	—	3.7	0.011	0.83	0.0	0.04	14.53	0.00	2.145	3.31	3.09	3.6	96.4	0.0	-3.71	0.62	0.75	2.72	3.7	0.006	0.67	0.0	0.04	15.92	0.01	2.057	8.86	0.17	4.0	96.0	0.0	-0.28	0.86	0.61	0.76	2.01	31720	1878	12	0	19	0	15714	logfile
✔	6ASX	7002	2021-08-09	2017-08-25	3.8	3.97	—	3.9	0.008	1.04	0.0	0.07	13.05	0.01	2.065	4.58	0.26	9.7	90.3	0.1	-4.16	0.79	0.83	2.44	3.9	0.011	1.04	1.0	0.05	16.72	0.00	2.058	9.49	0.18	6.8	93.2	0.0	-0.78	1.65	0.79	0.84	1.86	26359	3179	10	73	3	0	0	logfile
✔	6U9W	20703	2021-08-09	2019-09-09	3.3	3.46	—	3.5	0.011	1.02	0.0	0.08	15.04	0.00	1.975	2.65	0.70	3.7	96.3	0.0	-2.76	0.70	0.81	4.05	3.4	0.003	0.54	0.0	0.04	15.87	0.00	2.095	3.37	0.07	3.4	96.6	0.0	-0.12	1.65	0.73	0.84	3.55	26919	1686	6	3	42	0	12885	logfile
✔	6UQG	20847	2021-08-08	2019-10-19	3.54	4.05	3.70	4.0	0.009	0.97	0.0	0.06	15.11	0.01	2.286	7.77	0.00	4.2	95.8	0.0	-3.60	0.68	0.79	1.96	4.0	0.003	0.65	0.0	0.04	15.77	0.00	2.233	7.32	0.75	3.1	96.9	0.0	1.90	1.12	0.71	0.81	2.01	15976	2120	8	0	4	0	0	logfile
✔	6D73	7822	2021-08-10	2018-04-23	3.8	4.18	3.89	3.8	0.007	1.04	0.0	0.06	10.45	0.01	1.420	7.10	0.07	6.4	93.5	0.1	-3.78	0.75	0.76	1.62	3.8	0.004	0.66	0.0	0.04	13.18	0.00	2.106	11.47	0.30	6.2	93.8	0.0	0.72	0.78	0.77	0.79	1.18	35340	4878	8	0	92	0	0	logfile
✔	6A90	6995	2021-08-08	2018-07-11	2.8	2.90	—	2.9	0.011	1.23	0.0	0.07	11.68	0.01	2.302	3.55	1.75	7.6	92.1	0.3	-5.83	0.60	0.83	3.90	2.9	0.003	0.69	0.0	0.04	15.83	0.00	2.208	5.23	2.44	6.0	94.0	0.0	0.38	1.69	0.63	0.85	2.97	11085	1380	3	0	8	0	0	logfile
✔	6VRW	21372	2021-08-08	2020-02-10	3.71	4.25	3.76	4.0	0.006	0.83	0.0	0.06	13.56	0.00	2.301	4.29	0.40	7.8	92.2	0.0	-4.95	0.81	0.81	2.33	4.0	0.003	0.57	0.0	0.05	14.84	0.00	2.130	8.23	0.13	6.2	93.8	0.0	-1.96	0.46	0.82	0.83	2.53	14568	1671	12	0	96	0	0	logfile
✔	6VAi	21140	2021-08-11	2019-12-17	3.68	3.98	—	3.9	0.005	0.69	0.0	0.04	14.95	0.00	2.266	8.95	0.96	8.7	91.3	0.0	-2.39	0.72	0.82	3.11	3.9	0.003	0.56	0.0	0.04	16.40	0.00	2.272	6.70	0.39	7.4	92.6	0.0	1.68	1.27	0.67	0.83	2.56	45584	5874	22	0	0	0	0	logfile
✔	6MAR	9062	2021-08-08	2018-08-28	4.5	4.66	4.48	4.4	0.006	0.90	0.0	0.06	11.04	0.01	2.031	7.46	0.26	9.8	90.0	0.2	-3.41	0.78	0.81	—	4.4	0.006	0.78	0.0	0.05	12.79	0.01	2.037	19.36	0.00	10.3	89.7	0.0	-2.24	1.40	0.78	0.82	—	19211	2225	16	0	130	0	0	logfile
✔	6N2D	9327	2021-08-07	2018-11-12	3.3	3.50	3.29	3.6	0.008	1.21	0.0	0.07	11.75	0.01	1.610	14.11	0.71	2.6	97.4	0.0	-2.81	0.61	0.78	1.68	3.6	0.004	0.81	0.0	0.04	16.29	0.01	2.145	18.32	1.13	2.0	98.0	0.0	1.96	0.64	0.63	0.80	1.01	7162	993	13	0	0	0	0	logfile
✔	6PBX	20294	2021-08-09	2019-06-14	4.0	4.12	—	4.0	0.006	0.83	0.0	0.05	14.04	0.01	2.264	6.05	0.00	3.8	96.2	0.0	-3.07	0.68	0.67	—	4.0	0.003	0.70	0.0	0.04	15.11	0.00	2.195	12.76	0.09	4.0	96.0	0.0	1.61	0.76	0.73	0.78	—	23028	3152	8	0	0	0	0	logfile
✔	6PWE	20506	2021-08-08	2019-07-22	3.95	4.04	—	4.0	0.010	0.93	0.0	0.05	27.27	0.01	2.264	5.37	0.00	7.4	92.3	0.3	-6.65	0.70	0.80	2.98	4.0	0.005	0.70	0.0	0.04	28.69	0.01	2.063	12.93	0.97	4.9	95.1	0.0	-1.96	1.44	0.70	0.81	1.70	11923	744	10	294	0	0	0	logfile
✔	5M6S	3451	2021-08-07	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	20.10	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.5	0.003	0.64	0.0	0.03	18.57	0.00	1.968	10.68	0.00	4.2	95.8	0.0	1.93	2.66	0.04	0.07	—	1593	98	1	0	0	0	793	logfile
✔	6SW9	10320	2021-08-10	2019-09-20	4.2	5.88	4.48	3.0	0.014	1.26	0.0	0.06	17.96	0.02	1.769	31.35	0.80	19.0	80.8	0.2	-5.60	0.85	0.68	—	3.0	0.004	0.72	0.0	0.04	15.98	0.01	1.907	20.84	0.00	7.8	92.2	0.0	-1.83	1.41	0.93	0.84	—	70661	4508	47	1561	73	42	0	logfile

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