Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7C99	30309	2022-07-03	2020-06-05	3.36	3.44	—	3.5	0.008	1.05	0.0	0.05	16.20	0.00	1.776	9.93	0.00	6.0	94.0	0.0	-5.91	0.50	0.85	3.07	3.5	0.003	0.57	0.0	0.04	18.82	0.00	2.094	6.18	0.40	5.7	94.3	0.0	-2.32	2.17	0.51	0.87	2.57	7656	927	8	18	6	0	0	logfile
✔	7A65	11666	2022-07-03	2020-08-25	3.9	3.56	—	3.5	0.007	0.79	0.0	0.05	12.90	0.00	2.200	14.88	1.72	4.3	95.7	0.0	-2.31	0.58	0.72	1.62	3.5	0.004	0.66	0.0	0.04	15.87	0.00	2.211	11.28	0.22	3.5	96.5	0.0	1.01	1.27	0.59	0.72	1.24	12521	1596	4	0	6	0	0	logfile
✔	7AS4	11888	2022-07-04	2020-10-26	4.13	7.60	4.43	3.3	0.013	2.07	101.0	0.12	16.75	0.01	1.851	7.10	3.73	5.2	94.7	0.1	-1.41	0.79	0.59	—	3.2	0.003	0.67	0.0	0.04	14.57	0.00	2.112	13.53	0.00	3.8	96.2	0.0	0.52	0.80	0.87	0.78	—	120779	14997	47	14	0	0	0	logfile
✔	7DDD	30651	2022-07-05	2020-10-28	3.0	3.36	—	3.3	0.003	0.71	0.0	0.05	8.16	0.01	2.248	5.97	0.00	3.6	96.4	0.1	-3.86	0.67	0.64	1.47	3.3	0.010	1.07	2.0	0.05	15.74	0.01	2.138	15.58	3.59	3.7	96.3	0.0	-1.29	1.80	0.73	0.78	2.75	25503	3264	3	0	0	0	0	logfile
✔	7C9A	30310	2022-07-03	2020-06-05	3.43	3.55	—	3.6	0.007	1.04	0.0	0.05	17.43	0.01	1.965	8.72	0.00	4.9	95.1	0.0	-4.96	0.48	0.87	3.13	3.6	0.005	0.64	0.0	0.04	18.78	0.00	2.236	5.72	0.54	5.0	95.0	0.0	-0.26	1.35	0.48	0.89	2.92	7590	933	7	18	6	0	0	logfile
✔	7C9C	30311	2022-07-03	2020-06-05	3.33	3.44	—	3.4	0.009	1.03	0.0	0.06	17.28	0.00	1.232	5.18	0.79	5.4	94.6	0.0	-5.45	0.54	0.87	4.39	3.4	0.004	0.58	0.0	0.04	18.30	0.00	2.170	4.57	0.26	5.2	94.8	0.0	-1.83	0.64	0.53	0.90	3.41	7452	924	7	9	6	0	0	logfile
✔	6Y0C	10667	2022-07-06	2020-02-07	3.2	3.60	3.30	3.5	0.006	0.68	0.0	0.04	16.55	0.01	2.195	6.25	2.17	5.2	94.8	0.0	-1.90	0.78	0.76	2.62	3.5	0.004	0.62	0.0	0.04	16.62	0.00	1.871	7.79	0.16	3.8	96.2	0.0	-0.04	1.41	0.80	0.79	2.31	34967	2135	4	20	0	0	17430	logfile
✔	7BoK	30131	2022-07-07	2020-03-19	3.7	3.83	3.93	3.7	0.009	0.92	0.0	0.05	14.40	0.01	2.036	8.83	0.00	4.6	95.4	0.0	-3.42	0.53	0.57	2.24	3.7	0.008	0.83	1.0	0.04	15.57	0.01	2.025	13.91	0.19	4.7	95.3	0.0	-0.46	0.67	0.57	0.69	2.22	43668	5562	36	0	18	0	0	logfile
✔	7K0i	22598	2022-07-04	2020-09-04	3.3	3.75	—	3.7	0.005	0.64	0.0	0.05	12.84	0.00	2.222	6.58	0.25	4.0	96.0	0.0	0.10	0.72	0.81	2.93	3.7	0.003	0.52	0.0	0.04	14.14	0.00	2.012	6.32	0.12	2.6	97.4	0.0	0.65	0.31	0.76	0.83	2.25	15366	1954	10	0	6	0	0	logfile
✔	7KNi	22950	2022-07-07	2020-11-04	3.91	4.86	4.13	3.9	0.003	0.61	0.0	0.05	14.27	0.01	2.045	4.31	0.07	4.4	95.6	0.0	-1.75	0.77	0.56	0.26	4.0	0.005	0.74	0.0	0.05	15.94	0.01	2.046	22.90	0.26	7.2	92.8	0.0	-1.12	1.42	0.84	0.74	0.38	39574	4878	18	0	68	0	0	logfile
✔	7KNH	22949	2022-07-06	2020-11-04	3.74	4.42	3.98	4.0	0.003	0.71	1.0	0.05	14.08	0.01	2.139	6.41	0.13	3.9	96.1	0.0	-1.74	0.81	0.73	1.49	4.0	0.004	0.71	0.0	0.04	15.49	0.00	1.536	14.46	0.11	4.6	95.4	0.0	-0.78	1.28	0.84	0.80	1.41	34383	4260	14	0	56	0	0	logfile
✔	7KNE	22943	2022-07-06	2020-11-04	3.85	4.55	3.98	4.1	0.003	0.59	0.0	0.04	13.71	0.00	2.083	3.94	0.06	3.6	96.4	0.0	-1.17	0.81	0.72	1.07	4.1	0.004	0.62	0.0	0.04	15.14	0.00	2.116	14.20	0.22	4.8	95.2	0.0	-0.91	1.65	0.84	0.80	1.13	29191	3637	14	0	56	0	0	logfile
✔	7CM6	30402	2022-07-07	2020-07-25	3.0	2.48	—	3.0	0.004	0.82	0.0	0.05	8.42	0.01	2.281	3.06	0.00	3.6	96.4	0.0	-4.13	0.72	0.74	2.21	3.0	0.003	0.58	0.0	0.04	15.29	0.00	2.246	7.01	1.89	2.5	97.5	0.0	1.12	0.89	0.76	0.81	1.79	38680	4888	16	0	8	0	0	logfile
✔	7K0J	22599	2022-07-03	2020-09-04	3.1	3.65	—	3.6	0.006	0.71	0.0	0.05	13.14	0.00	2.210	5.80	0.00	3.2	96.8	0.0	0.19	0.64	0.80	3.76	3.6	0.004	0.52	0.0	0.04	14.55	0.00	2.210	5.61	0.12	2.3	97.7	0.0	0.85	0.40	0.63	0.80	3.20	7683	977	5	0	3	0	0	logfile
✔	7K0L	22601	2022-07-03	2020-09-04	3.4	3.83	—	3.7	0.004	0.60	0.0	0.04	12.59	0.00	2.141	4.54	0.00	1.9	98.1	0.0	1.09	0.74	0.87	3.05	3.7	0.003	0.49	0.0	0.04	13.88	0.00	2.204	5.39	0.25	2.1	97.9	0.0	0.97	1.04	0.74	0.88	2.79	7619	964	4	0	2	0	0	logfile
✔	7K0Q	22608	2022-07-03	2020-09-04	3.3	3.61	—	3.5	0.006	0.70	0.0	0.05	12.64	0.00	2.116	5.47	0.00	3.3	96.7	0.0	0.45	0.70	0.85	3.35	3.5	0.002	0.49	0.0	0.04	14.23	0.00	2.188	4.90	0.21	2.5	97.5	0.0	1.18	1.46	0.72	0.87	2.83	8778	1107	5	0	2	0	0	logfile
✔	7A7C	11677	2022-07-03	2020-08-27	3.16	3.66	3.23	3.5	0.003	0.54	0.0	0.04	13.51	0.00	2.199	6.79	0.00	4.5	95.5	0.0	-0.97	0.82	0.87	3.57	3.5	0.005	0.55	0.0	0.04	14.63	0.00	2.108	6.90	0.11	5.1	94.9	0.0	-0.29	0.24	0.83	0.89	3.27	9387	1226	2	0	1	0	0	logfile
✔	7A23	11614	2022-07-03	2020-08-15	3.7	3.80	—	3.8	0.008	1.04	26.0	0.99	15.47	0.01	1.596	24.47	1.07	10.5	89.3	0.2	-4.07	0.65	0.71	1.33	3.8	0.013	1.84	5.0	0.30	17.50	0.01	1.864	29.66	0.73	8.8	91.2	0.0	-1.81	1.48	0.68	0.76	1.14	57959	7354	57	0	20	0	0	logfile
✔	7LSS	23507	2022-07-04	2021-02-18	3.72	4.30	3.76	4.0	0.011	1.09	2.0	0.06	12.11	0.01	1.993	1.15	0.00	4.9	95.1	0.0	-0.63	0.76	0.78	3.19	4.0	0.004	0.63	0.0	0.04	13.24	0.01	2.166	5.92	0.05	3.4	96.6	0.0	0.73	1.57	0.79	0.84	2.24	20582	2783	14	0	42	0	0	logfile
✔	7A6H	11673	2022-07-07	2020-08-25	3.3	4.27	3.33	3.2	0.010	1.04	0.0	0.06	10.13	0.01	1.851	3.97	0.27	5.2	94.7	0.1	-3.66	0.89	0.83	3.14	3.2	0.002	0.64	0.0	0.04	12.08	0.00	2.114	8.68	0.04	3.6	96.4	0.0	0.27	0.63	0.91	0.89	2.24	40216	5057	23	0	9	0	0	logfile

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