Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Y9Z	10742	2022-05-14	2020-03-10	4.8	5.22	4.55	6.0	0.012	1.07	3.0	0.11	13.05	0.01	1.631	10.74	0.45	1.9	98.0	0.0	-0.96	0.71	0.75	—	4.9	0.004	0.88	0.0	0.05	13.30	0.01	2.036	21.36	0.00	3.7	96.3	0.0	-0.52	3.66	0.74	0.80	—	18418	2364	13	0	0	0	0	logfile
✔	6GJ3	0010	2022-05-14	2018-05-15	4.3	4.02	—	3.9	0.008	1.19	0.0	0.06	10.34	0.01	2.248	5.14	0.37	13.5	86.2	0.3	-4.76	0.71	0.78	—	3.9	0.003	0.69	0.0	0.04	12.07	0.01	2.261	8.85	0.00	9.6	90.4	0.0	-1.53	0.76	0.71	0.77	—	17405	2194	7	0	0	0	0	logfile
✔	6HD5	0201	2022-05-13	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.52	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.003	0.73	0.0	0.04	11.96	0.00	2.138	15.29	0.00	5.4	94.5	0.1	-0.09	2.01	0.45	0.55	—	9707	1234	3	0	0	0	0	logfile
✔	6oDJ	20021	2022-05-15	2019-03-26	3.5	3.75	—	3.7	0.009	1.50	0.0	0.07	11.32	0.01	2.438	2.03	0.00	0.0	0.0	0.0	—	0.81	0.81	—	3.7	0.012	1.73	0.0	0.06	7.95	0.00	2.092	10.66	0.00	0.0	0.0	0.0	—	0.60	0.82	0.83	—	25415	0	17	0	5083	0	0	logfile
✔	5TAZ	8390	2022-05-14	2016-09-10	4.3	4.46	4.85	4.3	0.004	0.86	4.0	0.05	9.92	0.01	1.373	4.90	0.58	10.2	89.6	0.2	-5.04	0.74	0.73	—	4.3	0.008	0.92	2.0	0.04	12.16	0.01	0.886	20.48	0.00	12.5	87.3	0.2	-2.18	0.83	0.75	0.77	—	121276	13500	12	0	3712	0	0	logfile
✔	6oEF	20020	2022-05-18	2019-03-27	3.8	3.98	—	3.8	0.007	1.67	0.0	0.07	11.76	0.01	2.376	3.96	0.00	0.0	0.0	0.0	—	0.47	0.78	—	3.8	0.006	1.21	0.0	0.05	6.00	0.00	2.198	8.14	0.00	0.0	0.0	0.0	—	0.58	0.49	0.80	—	51240	0	14	0	10248	0	0	logfile
✔	5TA3	8377	2022-05-15	2016-09-09	4.4	4.71	4.62	4.5	0.004	0.90	0.0	0.05	9.97	0.01	1.374	5.33	0.54	10.8	89.1	0.1	-4.86	0.81	0.78	—	4.5	0.003	0.73	0.0	0.04	11.94	0.00	2.089	17.28	0.00	11.7	88.2	0.1	-1.60	1.51	0.82	0.80	—	121456	13500	12	0	3720	0	0	logfile
✔	5MPD	3534	2022-05-17	2016-12-16	4.1	4.14	—	4.1	0.035	3.40	330.0	0.20	17.76	0.03	0.656	3.85	2.78	5.6	92.3	2.1	-2.14	0.21	0.37	—	4.1	0.010	1.18	2.0	0.05	15.58	0.01	1.051	28.38	0.00	7.6	92.2	0.3	-1.78	1.92	0.28	0.63	—	40974	5142	13	0	0	0	0	logfile
✔	5TAM	8379	2022-05-15	2016-09-10	4.3	4.53	4.46	4.3	0.005	0.92	4.0	0.05	9.87	0.01	1.373	5.54	0.35	10.4	89.5	0.2	-4.88	0.81	0.79	—	4.3	0.005	0.80	0.0	0.04	12.05	0.00	2.062	18.73	0.00	12.8	87.1	0.1	-1.79	1.51	0.82	0.81	—	121456	13500	12	0	3720	0	0	logfile
✔	5TAP	8381	2022-05-15	2016-09-10	4.4	4.55	4.56	4.4	0.004	0.88	4.0	0.05	9.99	0.01	1.373	4.48	0.54	9.9	89.9	0.2	-4.98	0.78	0.77	—	4.4	0.005	0.78	0.0	0.04	12.27	0.00	1.968	16.34	0.00	12.3	87.6	0.1	-1.83	0.88	0.79	0.80	—	121452	13500	12	0	3716	0	0	logfile
✔	6QC4	4496	2022-05-17	2018-12-26	4.6	4.73	4.64	4.6	0.006	1.11	0.0	0.85	11.15	0.01	1.949	7.39	0.38	10.8	89.0	0.1	-3.76	0.73	0.75	—	4.6	0.007	1.48	0.0	0.26	13.06	0.01	1.860	20.45	0.00	10.2	89.7	0.0	-1.19	2.20	0.75	0.79	—	96705	12008	81	0	85	0	0	logfile
✔	6RFS	4874	2022-05-13	2019-04-16	4.04	4.52	—	4.1	0.010	1.26	0.0	0.94	10.18	0.01	2.078	8.89	0.15	8.3	91.5	0.2	-4.08	0.83	0.83	—	4.1	0.008	1.57	0.0	0.29	11.83	0.00	2.081	16.89	0.00	6.2	93.8	0.0	-0.58	1.38	0.83	0.84	—	60966	7685	49	0	12	0	0	logfile
✔	6YTV	10924	2022-05-14	2020-04-24	4.39	3.96	4.35	3.9	0.004	0.78	0.0	0.04	14.56	0.00	2.183	16.16	0.00	6.0	93.5	0.4	-2.08	0.58	0.76	—	3.9	0.003	0.76	0.0	0.04	14.57	0.00	2.199	12.29	0.00	7.0	92.7	0.2	0.08	1.55	0.56	0.73	—	19560	2520	10	0	0	0	0	logfile
✔	6HJQ	0236	2022-05-15	2018-09-04	4.1	4.38	4.03	4.1	0.005	0.91	0.0	0.06	10.01	0.01	1.406	5.06	0.13	5.6	94.3	0.1	-3.06	0.83	0.87	—	4.1	0.004	0.64	0.0	0.04	11.22	0.00	1.971	9.97	0.00	5.7	94.3	0.0	-0.31	1.65	0.83	0.87	—	22530	2871	18	0	42	0	0	logfile
✔	5T9S	8375	2022-05-14	2016-09-09	4.2	4.32	4.62	4.2	0.004	0.88	0.0	0.05	9.86	0.01	1.373	4.01	0.50	10.3	89.5	0.1	-5.16	0.72	0.73	—	4.2	0.006	0.85	0.0	0.04	12.55	0.01	2.065	17.10	0.00	14.3	85.6	0.1	-2.38	0.93	0.73	0.77	—	120756	13500	12	0	3608	0	0	logfile
✔	5TAQ	8382	2022-05-15	2016-09-10	4.1	4.24	4.25	4.1	0.005	0.97	0.0	0.05	10.16	0.01	1.373	4.63	0.43	10.9	88.9	0.2	-5.26	0.76	0.78	—	4.1	0.006	0.86	0.0	0.05	12.43	0.01	2.015	16.27	0.00	13.3	86.5	0.1	-2.16	1.95	0.77	0.80	—	121456	13500	12	0	3720	0	0	logfile
✔	6SGX	10187	2022-05-13	2019-08-05	3.7	3.85	—	3.8	0.006	1.03	1.0	0.06	13.90	0.01	2.280	5.23	0.26	9.9	90.0	0.1	-4.82	0.59	0.81	1.45	3.8	0.011	1.18	1.0	0.04	15.51	0.01	2.162	11.82	0.00	10.0	90.0	0.0	-0.81	0.50	0.59	0.81	1.08	11227	1512	5	0	0	0	0	logfile
✔	6RET	4856	2022-05-12	2019-04-12	4.3	4.36	4.35	4.3	0.006	0.95	0.0	0.06	15.02	0.01	1.680	8.29	0.41	6.0	93.9	0.1	-5.14	0.59	0.72	—	4.3	0.005	0.78	0.0	0.05	14.40	0.01	1.864	17.63	0.00	6.9	93.0	0.1	-1.18	0.71	0.60	0.75	—	53756	7104	37	0	11	0	0	logfile
✔	7A96	11686	2022-05-16	2020-09-01	4.8	5.70	4.94	4.9	0.003	0.49	1.0	0.04	5.85	0.00	2.236	3.96	0.82	10.8	89.2	0.0	-4.46	0.88	0.77	—	4.9	0.003	0.69	0.0	0.04	9.30	0.00	2.090	14.29	0.00	4.6	95.4	0.0	-1.29	0.94	0.89	0.83	—	29811	3783	4	0	0	0	0	logfile
✔	7A95	11685	2022-05-16	2020-09-01	4.3	4.83	4.39	4.3	0.003	0.47	2.0	0.04	5.77	0.00	2.226	3.56	0.90	11.0	89.0	0.0	-4.57	0.87	0.78	—	4.4	0.004	0.65	0.0	0.04	8.67	0.00	2.134	9.98	0.00	4.7	95.2	0.1	-0.90	2.04	0.89	0.84	—	29887	3794	4	0	0	0	0	logfile

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