Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6D3R	7793	2023-04-20	2018-04-16	4.3	4.80	4.40	4.5	0.017	1.75	0.0	0.10	9.07	0.01	2.385	0.57	0.00	1.5	98.5	0.0	0.66	0.66	0.76	—	4.5	0.003	0.65	0.0	0.04	11.96	0.00	2.185	7.56	0.00	3.4	96.6	0.0	1.90	1.20	0.68	0.78	—	7610	1127	1	0	2	0	0	logfile
✔	7N65	24195	2023-04-25	2021-06-07	4.15	4.35	—	4.2	0.011	1.36	0.0	0.07	14.95	0.01	1.935	36.06	4.29	15.2	84.6	0.2	-4.44	0.78	0.77	—	4.2	0.004	0.86	0.0	0.05	13.50	0.00	2.139	19.44	0.00	11.1	88.9	0.0	-2.77	0.73	0.77	0.75	—	21525	2454	72	0	189	0	0	logfile
✔	7T3o	25666	2023-04-20	2021-12-08	3.3	3.72	—	3.7	0.006	0.68	0.0	0.05	13.49	0.00	2.284	3.91	0.29	7.1	92.9	0.0	-3.36	0.49	0.86	1.84	3.7	0.003	0.66	0.0	0.04	16.17	0.00	2.229	6.17	0.00	3.6	96.4	0.0	0.21	0.58	0.48	0.84	1.64	3410	452	1	0	0	0	0	logfile
✔	5T9S	8375	2023-04-24	2016-09-09	4.2	4.32	4.62	4.2	0.004	0.88	0.0	0.05	9.86	0.01	1.373	3.99	0.50	10.3	89.5	0.1	-5.16	0.72	0.73	—	4.2	0.005	0.79	0.0	0.04	12.46	0.00	2.092	15.41	0.00	13.6	86.3	0.1	-2.08	0.92	0.73	0.76	—	120756	13500	12	0	3608	0	0	logfile
✔	7CF9	30343	2023-04-22	2020-06-24	4.7	4.24	5.21	4.0	0.006	1.24	0.0	0.06	16.01	0.01	1.538	5.47	1.67	6.2	93.7	0.1	-4.86	0.79	0.68	—	4.0	0.003	0.76	0.0	0.04	13.67	0.00	2.032	14.49	0.00	5.5	94.5	0.0	-2.02	1.79	0.81	0.74	—	116104	14416	12	0	1820	0	0	logfile
✔	7Li7	23362	2023-04-20	2021-01-26	4.1	4.15	—	4.2	0.002	0.61	0.0	0.06	12.21	0.00	2.297	10.16	0.00	4.2	95.8	0.0	-2.70	0.52	0.67	—	4.1	0.003	0.66	0.0	0.04	12.76	0.00	2.215	13.30	0.00	5.8	94.2	0.0	-1.41	0.98	0.66	0.77	—	6177	765	5	0	13	0	0	logfile
✔	7FDA	31538	2023-04-22	2021-07-16	4.2	3.94	—	3.5	0.003	0.56	0.0	0.04	11.99	0.00	1.871	8.71	0.00	5.8	94.2	0.0	-0.86	0.72	0.63	—	3.1	0.004	0.75	0.0	0.04	13.16	0.00	2.055	16.36	0.00	5.8	94.2	0.0	-0.77	1.81	0.77	0.78	—	64497	8295	31	0	0	0	0	logfile
✔	6VWJ	21418	2023-04-22	2020-02-19	4.21	4.58	—	4.2	0.005	0.99	0.0	0.05	13.45	0.01	1.915	9.24	1.20	4.8	94.8	0.4	-1.20	0.79	0.65	—	4.2	0.003	0.66	0.0	0.05	12.86	0.00	2.080	10.18	0.00	8.9	91.1	0.0	-1.44	1.53	0.80	0.67	—	11799	747	2	0	0	0	5789	logfile
✔	7B6D	12052	2023-04-21	2020-12-07	4.27	2.60	—	2.5	0.005	0.87	0.0	0.05	14.40	0.01	2.049	32.99	0.43	10.2	89.7	0.1	-2.46	0.78	0.74	—	2.5	0.003	0.72	0.0	0.05	14.41	0.00	2.080	23.40	0.00	9.1	90.9	0.0	-1.38	1.33	0.78	0.75	—	10470	1290	8	0	0	0	0	logfile
✔	6VRH	21368	2023-04-20	2020-02-07	3.3	3.68	3.56	3.6	0.004	0.60	0.0	0.04	12.99	0.00	2.212	9.91	0.00	5.1	94.9	0.0	-3.01	0.45	0.70	2.12	3.6	0.003	0.57	0.0	0.04	15.00	0.00	2.158	9.18	0.00	5.3	94.7	0.0	-0.60	0.58	0.48	0.73	1.90	6142	764	4	0	5	0	0	logfile
✔	5T9V	8376	2023-04-24	2016-09-09	4.4	4.79	4.75	4.5	0.004	0.90	4.0	0.05	9.94	0.01	1.374	5.64	0.54	10.5	89.3	0.2	-4.84	0.81	0.78	—	4.5	0.003	0.72	0.0	0.04	11.70	0.00	2.114	16.07	0.00	10.7	89.1	0.1	-1.35	0.84	0.82	0.80	—	121456	13500	12	0	3720	0	0	logfile
✔	8E99	27961	2023-04-24	2022-08-26	4.24	4.70	4.27	4.5	0.004	0.82	2.0	0.05	10.60	0.01	1.579	8.15	0.30	7.4	92.2	0.3	-1.79	0.73	0.75	—	4.5	0.003	0.69	0.0	0.05	10.73	0.00	2.204	6.12	0.00	7.8	91.9	0.2	-1.34	0.47	0.74	0.77	—	17583	2710	11	0	10	0	0	logfile
✔	7JSE	22451	2023-04-22	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.50	—	3.9	0.007	1.10	0.0	0.09	14.86	0.00	2.156	11.87	0.00	20.1	79.9	0.0	-3.21	2.77	0.87	0.64	—	13288	3168	24	32	0	0	0	logfile
✔	7WB5	32395	2023-04-19	2021-12-15	3.7	3.89	—	3.9	0.011	1.41	0.0	0.09	18.47	0.02	2.188	18.30	14.00	18.2	79.6	2.2	-4.90	0.61	0.78	2.04	3.9	0.004	0.83	0.0	0.04	16.86	0.01	2.186	16.09	0.00	10.4	89.6	0.0	-3.57	1.62	0.61	0.77	2.22	3256	408	4	0	3	0	0	logfile
✔	5TAQ	8382	2023-04-24	2016-09-10	4.1	4.24	4.25	4.1	0.005	0.97	0.0	0.05	10.16	0.01	1.373	4.58	0.43	10.9	88.9	0.2	-5.26	0.76	0.78	—	4.1	0.005	0.79	0.0	0.04	12.30	0.00	2.046	14.49	0.00	12.5	87.4	0.1	-1.92	1.94	0.77	0.80	—	121456	13500	12	0	3720	0	0	logfile
✔	7SHF	25126	2023-04-24	2021-10-08	3.4	3.68	—	3.7	0.008	1.14	1.0	0.35	16.30	0.01	2.190	9.50	0.68	7.1	92.4	0.5	-3.05	0.64	0.80	2.32	3.7	0.003	0.64	0.0	0.04	16.34	0.00	2.224	6.70	0.00	6.1	93.6	0.3	-1.16	1.04	0.68	0.86	1.62	11443	1326	6	0	24	0	0	logfile
✔	7JMi	22395	2023-04-24	2020-07-31	4.5	6.62	—	4.3	0.004	0.92	0.0	0.05	10.07	0.01	1.373	7.47	0.31	10.5	89.3	0.2	-4.79	0.58	0.34	—	4.2	0.003	0.89	0.0	0.05	11.88	0.01	2.082	18.52	0.00	11.8	88.0	0.2	-3.52	0.83	0.81	0.69	—	120756	13500	12	0	3608	0	0	logfile
✔	5MQ0	3541	2023-04-28	2016-12-19	4.17	4.40	—	4.2	0.010	1.54	21.0	0.11	14.99	0.01	0.679	7.92	2.73	7.7	91.4	0.9	-2.01	0.68	0.56	—	4.0	0.003	0.69	0.0	0.04	14.55	0.00	1.925	17.57	0.00	5.7	94.2	0.1	0.09	2.11	0.74	0.73	—	77441	9673	52	448	99	0	0	logfile
✔	7JLX	22383	2023-04-20	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.003	0.75	0.0	0.04	7.17	0.00	2.306	8.03	0.00	17.7	82.3	0.0	-2.25	2.42	0.48	0.53	—	3288	664	4	0	0	0	0	logfile
✔	7JJJ	22354	2023-04-20	2020-07-26	4.5	4.63	4.47	4.5	0.020	1.79	0.0	0.13	10.01	0.01	2.377	0.90	0.07	2.0	98.0	0.0	0.68	0.79	0.80	—	4.5	0.004	0.71	0.0	0.05	12.38	0.00	2.113	11.30	0.00	4.0	96.0	0.0	-0.22	1.44	0.80	0.83	—	54614	6674	92	0	182	0	0	logfile

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