Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6BX3	7303	2021-08-08	2017-12-16	4.3	4.71	—	4.4	0.007	1.49	0.0	0.08	12.65	0.01	1.094	24.68	0.97	18.8	81.2	0.1	-5.00	0.74	0.72	—	4.4	0.005	0.92	0.0	0.05	13.33	0.00	2.018	29.37	0.00	18.2	81.7	0.1	-3.55	1.46	0.74	0.74	—	10456	1413	7	0	0	0	0	logfile
✔	6SW9	10320	2021-08-10	2019-09-20	4.2	5.88	4.48	3.0	0.014	1.26	0.0	0.06	17.96	0.02	1.769	31.35	0.80	19.0	80.8	0.2	-5.60	0.85	0.68	—	3.0	0.004	0.72	0.0	0.04	15.98	0.01	1.907	20.84	0.00	7.8	92.2	0.0	-1.83	1.41	0.93	0.84	—	70661	4508	47	1561	73	42	0	logfile
✔	6o00	0564	2021-08-10	2019-02-14	4.18	4.51	—	4.3	0.005	0.72	0.0	0.04	14.22	0.00	2.087	4.70	0.69	4.6	95.4	0.0	-3.33	0.67	0.77	—	4.2	0.004	0.60	0.0	0.04	13.42	0.00	1.897	11.34	0.00	4.7	95.3	0.0	1.13	1.90	0.68	0.78	—	31470	1878	6	0	0	0	15714	logfile
✔	6U6i	20666	2021-08-10	2019-08-29	3.12	3.43	—	3.4	0.006	0.45	0.0	0.07	11.24	0.00	2.029	5.98	0.00	7.6	92.4	0.0	-3.59	0.80	0.80	4.39	3.3	0.003	0.48	0.0	0.04	12.86	0.00	2.097	5.80	0.00	5.6	94.4	0.0	0.11	0.53	0.82	0.84	4.21	21701	1496	8	0	11	0	10337	logfile
✔	6UM5	20817	2021-08-09	2019-10-09	4.2	4.70	—	4.3	0.010	1.51	27.0	0.12	12.65	0.02	2.022	6.93	4.06	6.0	92.8	1.2	-1.89	0.69	0.66	—	4.2	0.004	0.78	0.0	0.05	12.48	0.00	2.157	12.82	0.00	8.4	91.2	0.4	-1.56	0.98	0.80	0.83	—	20562	2487	15	0	96	0	0	logfile
✔	6DZV	8940	2021-08-07	2018-07-05	4.2	4.78	4.79	4.8	0.020	1.16	0.0	0.14	9.78	0.01	2.088	3.61	0.00	3.8	96.2	0.0	-4.08	0.49	0.64	—	4.7	0.003	0.81	0.0	0.05	13.25	0.00	2.075	14.86	0.00	4.2	95.8	0.0	-0.87	1.55	0.53	0.70	—	6121	765	4	0	4	0	0	logfile
✔	6oSY	20189	2021-08-10	2019-05-02	4.3	4.54	4.35	4.4	0.014	1.44	0.0	0.08	15.94	0.01	2.290	6.39	2.64	9.6	90.4	0.0	-3.58	0.77	0.83	—	4.4	0.005	0.78	0.0	0.05	14.00	0.01	2.098	15.66	0.00	8.5	91.5	0.0	-1.71	0.71	0.77	0.82	—	32463	3834	30	0	186	0	0	logfile
✔	5TAZ	8390	2021-08-10	2016-09-10	4.3	4.46	4.85	4.3	0.004	0.86	4.0	0.05	9.92	0.01	1.373	4.78	0.58	10.2	89.6	0.2	-5.04	0.74	0.73	—	4.3	0.008	0.87	4.0	0.04	12.26	0.00	2.033	16.76	0.00	12.4	87.4	0.2	-1.94	0.98	0.75	0.77	—	121276	13500	12	0	3712	0	0	logfile
✔	6CoY	7544	2021-08-07	2018-03-13	3.36	3.52	3.38	3.6	0.020	1.43	0.0	0.09	10.54	0.01	2.242	1.38	0.00	2.8	96.7	0.4	-0.30	0.70	0.86	2.95	3.6	0.004	0.61	0.0	0.04	13.45	0.01	2.241	6.54	0.00	3.5	96.5	0.0	3.20	0.57	0.61	0.83	1.95	7156	930	4	0	4	0	0	logfile
✔	6NC3	0434	2021-08-11	2018-12-10	4.5	5.02	4.53	4.5	0.019	1.79	0.0	0.11	10.64	0.01	2.381	0.92	0.15	3.1	96.5	0.4	0.08	0.77	0.77	—	4.5	0.003	0.70	0.0	0.05	12.16	0.00	2.171	14.87	0.00	5.9	94.1	0.0	-0.54	0.90	0.68	0.62	—	38904	4686	30	0	162	0	0	logfile
✔	5KPV	8280	2021-08-18	2016-07-05	4.1	5.32	4.22	4.1	0.008	1.18	5.0	0.09	14.56	0.01	2.074	34.14	0.66	13.5	80.3	6.2	-4.67	0.90	0.78	—	4.1	0.003	0.65	0.0	0.03	15.70	0.00	2.007	26.07	0.00	10.0	89.1	0.9	-1.72	1.81	0.94	0.89	—	154603	6623	59	4812	0	0	0	logfile
✔	5WVE	6690	2021-08-11	2016-12-24	4.4	4.90	—	5.1	0.008	1.34	7.0	0.08	19.34	0.01	1.493	67.70	16.86	7.1	89.5	3.4	-0.75	0.49	0.15	—	4.6	0.004	0.86	0.0	0.04	13.40	0.00	1.793	28.52	0.00	8.7	90.6	0.7	-2.27	3.58	0.83	0.70	—	78605	9766	39	0	21	0	0	logfile
✔	3JAU	6366	2021-08-09	2015-06-24	4.8	4.76	—	5.7	0.027	2.65	660.0	0.16	14.74	0.02	1.686	11.04	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.003	0.69	0.0	0.04	13.59	0.00	2.083	12.58	0.00	4.6	95.0	0.4	-0.68	1.47	0.21	0.38	—	114900	14700	180	0	0	0	0	logfile
✔	5LC5	4032	2021-08-11	2016-06-19	4.35	4.47	4.28	4.3	0.009	1.47	18.0	1.11	14.86	0.01	1.587	6.01	3.67	8.6	87.7	3.7	-4.81	0.69	0.71	—	4.3	0.010	1.90	0.0	0.33	13.13	0.01	2.021	17.25	0.00	9.8	89.2	1.0	-1.70	1.75	0.71	0.78	—	51718	5916	52	0	1988	0	0	logfile
✔	6MAR	9062	2021-08-08	2018-08-28	4.5	4.66	4.48	4.4	0.006	0.90	0.0	0.06	11.04	0.01	2.031	7.46	0.26	9.8	90.0	0.2	-3.41	0.78	0.81	—	4.4	0.006	0.78	0.0	0.05	12.79	0.01	2.037	19.36	0.00	10.3	89.7	0.0	-2.24	1.40	0.78	0.82	—	19211	2225	16	0	130	0	0	logfile
✔	6CS2	7582	2021-08-09	2018-03-19	4.4	4.80	4.54	4.3	0.006	0.89	0.0	0.05	9.00	0.01	1.972	7.55	0.24	7.0	92.9	0.1	-3.98	0.85	0.82	—	4.3	0.003	0.64	0.0	0.04	11.07	0.00	2.061	13.80	0.00	6.7	93.3	0.0	-1.45	1.28	0.85	0.82	—	27858	3404	7	0	91	0	0	logfile
✔	3J1Q	5415	2021-08-27	2012-04-30	4.5	4.62	—	4.6	0.009	1.72	0.0	0.10	17.68	0.01	2.064	61.26	14.85	8.2	89.9	1.9	-4.91	0.74	0.64	—	4.6	0.004	0.87	0.0	0.04	13.93	0.01	1.997	18.18	0.00	6.9	93.1	0.0	-1.66	1.30	0.77	0.71	—	248160	31020	60	0	0	0	0	logfile
✔	5oQJ	3846	2021-08-09	2017-08-11	4.7	4.68	—	4.2	0.007	0.54	0.0	0.04	12.44	0.00	1.336	7.72	0.30	6.5	92.3	1.3	-3.42	0.70	0.59	—	4.3	0.003	0.69	0.0	0.04	14.36	0.00	2.073	12.02	0.00	4.8	95.0	0.3	0.14	1.20	0.84	0.81	—	62931	7649	43	148	557	0	0	logfile
✔	6KLE	0709	2021-08-08	2019-07-30	4.5	4.63	—	4.4	0.004	0.96	0.0	0.05	11.17	0.01	2.204	6.22	0.57	8.4	91.4	0.3	-5.33	0.80	0.71	—	4.4	0.003	0.78	0.0	0.04	12.60	0.00	1.891	14.26	0.00	9.3	90.5	0.1	-0.91	2.22	0.83	0.77	—	12677	1597	3	7	2	0	0	logfile
✔	6P6F	20261	2021-08-08	2019-06-03	4.5	4.71	4.50	4.6	0.017	1.59	0.0	0.09	9.24	0.01	2.442	0.07	0.00	0.3	99.7	0.0	0.73	0.71	0.82	—	4.6	0.004	0.91	0.0	0.05	12.30	0.01	2.154	20.55	0.00	2.6	97.4	0.0	-0.11	1.38	0.72	0.78	—	159840	21060	120	0	0	0	0	logfile

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