Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7A2i	11625	2021-12-01	2020-08-18	3.3	3.94	3.40	3.8	0.004	0.62	0.0	0.04	12.87	0.00	2.232	7.09	0.00	7.0	93.0	0.0	-1.94	0.81	0.84	2.69	3.8	0.003	0.52	0.0	0.04	14.05	0.00	2.096	6.14	0.00	4.4	95.6	0.0	-0.27	1.20	0.82	0.86	2.63	9196	1217	2	0	1	0	0	logfile
✔	6ZPG	11338	2021-12-01	2020-07-08	4.6	4.29	—	7.0	0.004	0.99	0.0	0.05	15.64	0.01	2.313	5.51	0.25	5.6	94.4	0.0	-3.85	0.60	0.55	—	6.9	0.003	0.85	0.0	0.05	15.43	0.00	2.151	21.12	0.00	7.4	92.6	0.0	-0.02	2.62	0.63	0.60	—	3808	463	1	0	0	0	0	logfile
✔	7CZ6	30507	2021-12-01	2020-09-07	4.1	4.07	—	4.1	0.009	1.62	0.0	0.05	8.57	0.01	1.047	53.34	0.00	8.1	91.9	0.0	-1.66	0.61	0.58	—	4.1	0.004	0.82	0.0	0.05	10.87	0.01	2.091	15.47	0.00	6.2	93.8	0.0	-1.99	0.85	0.61	0.72	—	5442	756	6	0	0	0	0	logfile
✔	7KY9	23072	2021-12-02	2020-12-07	4.05	4.67	—	4.5	0.003	0.68	0.0	0.05	13.43	0.00	2.206	15.79	0.00	8.3	91.7	0.0	-1.25	0.67	0.71	—	4.5	0.004	0.73	0.0	0.05	13.65	0.00	2.070	23.03	0.00	9.9	90.1	0.0	-1.20	0.53	0.69	0.74	—	10354	1275	7	0	14	0	0	logfile
✔	6ZLV	11275	2021-12-01	2020-07-01	3.5	3.60	—	3.5	0.011	1.86	4.0	0.12	12.22	0.01	2.221	19.37	2.72	3.7	95.7	0.6	-1.53	0.54	0.79	1.09	3.5	0.004	0.80	0.0	0.05	16.00	0.00	2.089	15.50	0.00	2.6	97.4	0.0	0.20	1.63	0.54	0.78	2.01	5352	704	4	0	0	0	0	logfile
✔	6WKY	21813	2021-12-01	2020-04-17	4.2	4.29	—	4.1	0.006	0.74	0.0	0.05	16.88	0.00	2.366	8.91	0.00	0.6	99.4	0.0	-5.20	0.76	0.88	—	4.1	0.004	0.94	0.0	0.05	15.75	0.00	2.311	20.60	0.00	0.2	99.8	0.0	-1.99	1.44	0.75	0.86	—	9140	1160	40	0	0	0	0	logfile
✔	7KDT	22829	2021-12-01	2020-10-09	3.05	3.34	3.19	3.4	0.012	1.74	0.0	0.09	14.56	0.02	2.562	0.12	0.47	1.4	98.6	0.0	-1.64	0.70	0.77	2.95	3.3	0.002	0.51	0.0	0.03	17.10	0.00	2.221	6.08	0.00	1.8	98.2	0.0	3.06	2.82	0.68	0.79	2.35	8064	505	2	0	0	0	4042	logfile
✔	7KA3	22757	2021-12-02	2020-09-29	3.3	3.20	—	3.4	0.004	0.76	0.0	0.04	13.66	0.01	2.294	3.99	0.36	2.9	97.1	0.0	-2.21	0.76	0.82	1.82	3.3	0.003	0.52	0.0	0.04	15.76	0.00	2.240	6.98	0.00	4.4	95.6	0.0	1.93	0.47	0.77	0.84	0.94	10472	1372	4	0	0	0	0	logfile
✔	7A92	11682	2021-12-01	2020-09-01	4.2	4.58	4.29	4.2	0.007	0.83	0.0	0.06	14.45	0.01	2.222	3.86	1.19	5.2	94.7	0.1	-2.44	0.77	0.64	—	4.2	0.003	0.60	0.0	0.04	13.40	0.00	2.079	6.92	0.00	3.1	96.9	0.0	-0.13	0.77	0.89	0.83	—	10040	1231	5	0	10	0	0	logfile
✔	7KAT	22783	2021-12-02	2020-10-01	4.4	5.04	4.41	4.5	0.002	0.51	0.0	0.04	11.32	0.00	2.185	6.85	0.00	1.9	98.1	0.0	-0.63	0.65	0.83	—	4.5	0.002	0.57	0.0	0.04	12.07	0.00	2.070	9.26	0.00	2.1	97.9	0.0	2.26	1.32	0.65	0.85	—	10431	1340	6	0	0	0	0	logfile
✔	7DTW	30856	2021-12-02	2021-01-06	4.5	4.74	—	3.6	0.007	0.99	0.0	0.06	13.61	0.01	2.267	9.03	0.00	10.3	89.7	0.0	-4.26	0.71	0.78	—	3.7	0.002	0.59	0.0	0.05	12.54	0.00	2.212	7.49	0.00	8.4	91.6	0.0	-1.22	0.53	0.71	0.79	—	10250	1556	8	0	14	0	0	logfile
✔	7L0R	23101	2021-12-01	2020-12-12	4.2	4.12	4.05	4.0	0.007	1.37	2.0	0.08	13.58	0.01	2.106	10.15	1.05	6.6	93.4	0.0	-3.44	0.61	0.66	—	4.0	0.003	0.79	0.0	0.05	13.26	0.00	2.121	19.86	0.00	4.3	95.7	0.0	-0.22	3.46	0.62	0.74	—	6968	887	5	0	0	0	0	logfile
✔	7D76	30602	2021-12-01	2020-10-03	3.1	3.39	—	3.4	0.020	0.85	0.0	0.06	13.93	0.01	2.167	8.25	0.00	4.7	95.3	0.0	-2.55	0.65	0.81	3.21	3.4	0.004	0.67	0.0	0.04	15.51	0.01	2.170	8.89	0.00	4.5	95.5	0.0	0.41	1.49	0.65	0.81	2.69	7015	874	6	0	7	0	0	logfile
✔	7KPW	22990	2021-12-01	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.8	0.005	0.86	0.0	0.04	6.91	0.00	2.059	5.41	0.00	14.6	84.8	0.6	-1.66	2.04	0.83	0.83	—	4313	865	1	0	0	0	0	logfile
✔	7KTU	23030	2021-12-01	2020-11-24	4.15	4.49	—	4.2	0.006	1.05	0.0	0.05	12.61	0.01	2.259	12.84	0.37	4.3	95.7	0.0	-5.35	0.81	0.79	—	4.2	0.003	0.78	0.0	0.04	13.34	0.00	2.145	19.43	0.00	3.8	96.2	0.0	-0.11	0.90	0.80	0.77	—	7577	995	1	0	0	0	0	logfile
✔	7KXY	23067	2021-12-01	2020-12-05	4.4	4.55	4.44	4.5	0.004	0.82	0.0	0.05	15.13	0.01	2.197	19.23	7.18	26.0	69.8	4.2	-5.90	0.63	0.60	—	4.5	0.004	0.88	0.0	0.05	14.67	0.01	2.083	26.15	0.00	18.8	81.1	0.1	-4.97	0.60	0.64	0.62	—	9510	1181	2	0	0	0	0	logfile
✔	6ZD0	11172	2021-12-01	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	3.7	0.003	0.74	0.0	0.04	5.33	0.00	2.199	10.22	0.00	19.5	80.1	0.4	-4.32	2.53	0.59	0.58	—	7962	1611	6	0	0	0	0	logfile
✔	7CN0	30412	2021-12-01	2020-07-29	3.9	3.96	—	3.9	0.004	0.62	0.0	0.04	13.32	0.00	1.843	14.90	0.00	8.1	91.9	0.0	-2.90	0.55	0.77	2.36	3.9	0.002	0.65	0.0	0.04	15.93	0.00	2.289	10.80	0.00	6.7	93.3	0.0	0.29	0.62	0.55	0.76	0.83	6602	884	5	0	2	0	0	logfile
✔	7LQ6	23482	2021-12-01	2021-02-13	3.28	4.07	3.16	3.5	0.005	0.76	0.0	0.05	15.77	0.00	1.549	9.45	1.41	5.5	94.4	0.2	-4.83	0.90	0.85	3.36	3.5	0.003	0.64	0.0	0.04	16.28	0.01	2.138	7.09	0.00	3.6	96.4	0.0	0.12	1.01	0.91	0.87	1.78	5267	672	1	0	0	0	0	logfile
✔	7DDP	30653	2021-12-01	2020-10-29	3.4	2.88	—	3.3	0.003	0.54	0.0	0.04	14.12	0.00	2.100	8.14	0.29	2.0	98.0	0.0	-1.50	0.70	0.77	2.19	3.3	0.005	0.65	0.0	0.04	16.03	0.01	1.991	9.80	0.00	3.2	96.8	0.0	0.59	0.39	0.72	0.80	2.13	6477	791	4	0	6	0	0	logfile

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