Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6W4o	21535	2022-07-06	2020-03-11	4.8	5.05	4.72	4.7	0.004	0.77	1.0	0.05	10.85	0.00	0.834	16.31	0.91	3.0	96.7	0.2	-1.53	0.83	0.70	—	4.7	0.005	0.80	0.0	0.05	12.92	0.01	2.115	26.69	0.00	2.7	97.1	0.2	0.29	1.37	0.89	0.83	—	14475	1789	13	0	0	0	0	logfile
✔	7NCJ	12268	2022-07-03	2021-01-28	4.23	3.11	3.97	4.5	0.011	1.60	2.0	0.10	13.68	0.01	2.444	0.18	0.76	7.7	92.0	0.3	-2.36	0.65	0.46	—	4.5	0.003	0.61	1.0	0.05	14.19	0.00	1.945	15.31	0.00	10.3	89.7	0.0	-2.78	1.36	0.70	0.58	—	10860	774	12	0	0	0	5586	logfile
✔	6Y97	10733	2022-07-03	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.28	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.004	0.76	0.0	0.04	13.35	0.00	2.096	18.78	0.00	6.8	93.2	0.0	0.33	1.52	0.72	0.72	—	4366	564	4	0	0	0	0	logfile
✔	6WU2	21903	2022-07-04	2020-05-04	3.36	3.76	3.55	3.7	0.010	0.77	0.0	0.05	14.78	0.00	2.074	6.99	0.76	7.8	92.0	0.2	-3.14	0.61	0.86	3.65	3.7	0.003	0.57	0.0	0.04	15.83	0.00	2.021	7.89	0.00	6.2	93.6	0.2	0.82	0.62	0.60	0.87	2.81	15404	978	4	0	10	0	7812	logfile
✔	6S2E	10088	2022-07-03	2019-06-20	4.2	4.38	4.22	4.2	0.009	1.53	0.0	0.13	14.14	0.01	2.218	7.85	1.88	4.7	95.2	0.1	-1.45	0.81	0.75	—	4.2	0.004	0.73	0.0	0.04	13.40	0.00	2.088	18.19	0.00	4.1	95.9	0.0	-0.02	1.28	0.81	0.76	—	12459	1539	4	0	1	0	0	logfile
✔	7CZ6	30507	2022-07-03	2020-09-07	4.1	4.07	—	4.1	0.009	1.62	0.0	0.05	8.57	0.01	1.047	53.34	0.00	8.1	91.9	0.0	-1.66	0.61	0.58	—	4.1	0.004	0.82	0.0	0.05	10.87	0.01	2.091	15.47	0.00	6.2	93.8	0.0	-1.99	0.85	0.61	0.72	—	5442	756	6	0	0	0	0	logfile
✔	6So5	10266	2022-07-03	2019-08-29	4.2	4.36	—	4.2	0.005	0.82	0.0	0.04	14.99	0.01	1.973	23.72	0.00	10.2	89.8	0.0	-4.60	0.68	0.79	—	4.2	0.004	0.83	0.0	0.05	14.25	0.01	2.180	16.81	0.00	5.8	94.2	0.0	-0.33	1.26	0.66	0.78	—	8737	1097	7	0	1	0	0	logfile
✔	6VWJ	21418	2022-07-03	2020-02-19	4.21	4.58	—	4.2	0.005	0.99	0.0	0.05	13.45	0.01	1.915	9.33	1.20	4.8	94.8	0.4	-1.20	0.79	0.65	—	4.2	0.003	0.67	0.0	0.05	12.78	0.00	2.043	10.26	0.00	8.3	91.7	0.0	-1.31	1.52	0.80	0.67	—	11799	747	2	0	0	0	5789	logfile
✔	7AT8	11910	2022-07-04	2020-10-29	4.4	4.59	—	4.4	0.004	0.63	0.0	0.04	24.70	0.00	1.763	8.58	0.40	2.3	97.4	0.3	-1.00	0.84	0.77	—	4.4	0.005	0.72	0.0	0.04	26.40	0.01	2.127	18.05	0.00	6.0	93.9	0.1	0.02	1.03	0.86	0.83	—	15951	1186	13	312	20	0	0	logfile
✔	6VN0	21246	2022-07-04	2020-01-29	4.25	4.57	4.28	4.5	0.018	1.73	0.0	0.09	10.70	0.01	2.270	2.06	0.15	2.9	96.5	0.6	0.70	0.74	0.78	—	4.5	0.003	0.74	0.0	0.05	12.73	0.00	2.085	12.75	0.00	7.1	92.5	0.3	-0.71	1.83	0.74	0.80	—	19962	2364	51	0	105	0	0	logfile
✔	7K45	22660	2022-07-02	2020-09-14	3.7	3.90	3.76	3.9	0.014	1.41	0.0	0.08	9.47	0.01	2.568	0.35	0.00	2.2	97.8	0.0	0.92	0.79	0.78	4.02	3.9	0.020	1.45	1.0	0.06	14.84	0.01	2.277	8.49	0.00	3.2	96.8	0.0	0.06	1.30	0.80	0.80	2.81	3038	419	4	0	2	0	0	logfile
✔	6RJU	4906	2022-07-02	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	10.0	0.003	0.66	0.0	0.03	16.23	0.00	2.422	6.03	0.00	3.9	96.1	0.0	-0.32	1.40	0.27	0.03	-0.67	1992	131	1	0	0	0	997	logfile
✔	7JPS	22421	2022-07-04	2020-08-09	4.4	5.22	—	3.8	0.006	1.19	1.0	0.06	16.52	0.01	2.102	4.40	0.00	3.1	96.9	0.0	-2.45	0.67	0.46	—	3.8	0.004	0.72	0.0	0.04	16.33	0.00	1.876	20.20	0.00	5.4	94.6	0.0	-0.52	1.56	0.84	0.72	—	16352	1932	11	26	7	0	0	logfile
✔	6ZQJ	11366	2022-07-04	2020-07-09	4.2	3.97	4.23	4.3	0.002	0.55	0.0	0.04	12.29	0.00	2.286	6.57	1.55	2.9	97.0	0.1	-2.13	0.67	0.75	—	4.2	0.004	0.87	0.0	0.05	13.96	0.00	2.139	12.94	0.00	5.6	94.4	0.0	-1.11	2.03	0.70	0.79	—	15096	1965	12	0	3	0	0	logfile
✔	6Y50	10688	2022-07-04	2020-02-24	4.1	4.22	—	4.0	0.003	0.52	0.0	0.04	6.93	0.00	0.761	13.95	0.00	5.9	93.9	0.2	-3.48	0.68	0.68	—	4.0	0.004	0.67	0.0	0.05	9.54	0.00	2.003	8.78	0.00	11.0	88.9	0.1	-1.71	0.52	0.71	0.73	—	14916	2537	10	50	3	0	0	logfile
✔	6LBA	0868	2022-07-04	2019-11-13	4.1	4.19	—	4.1	0.005	1.04	8.0	0.06	14.23	0.01	1.605	70.40	3.56	10.9	88.6	0.5	-2.46	0.76	0.78	—	4.1	0.003	0.77	0.0	0.04	14.49	0.00	2.099	15.67	0.00	7.8	92.2	0.0	0.16	1.67	0.77	0.79	—	14992	1864	4	0	0	0	0	logfile
✔	6oJQ	20092	2022-07-04	2019-04-12	3.67	3.91	—	3.8	0.009	0.78	0.0	0.04	10.33	0.00	2.000	3.54	0.00	4.0	96.0	0.0	-3.02	0.57	0.74	2.96	3.8	0.003	0.53	0.0	0.04	12.78	0.00	1.853	7.74	0.00	3.6	96.4	0.0	-0.83	2.73	0.65	0.82	3.00	18055	1164	5	0	4	0	8878	logfile
✔	6Y5V	10704	2022-07-03	2020-02-25	4.08	4.18	4.07	4.2	0.004	0.66	0.0	0.04	11.31	0.00	2.232	7.46	0.29	4.0	96.0	0.0	-2.25	0.65	0.84	—	4.2	0.003	0.67	0.0	0.04	12.68	0.00	2.166	10.56	0.00	4.1	95.9	0.0	0.92	2.46	0.65	0.83	—	13400	1758	6	0	8	0	0	logfile
✔	7K08	22589	2022-07-08	2020-09-03	4.7	4.26	—	4.2	0.025	2.31	9.0	0.11	11.10	0.02	2.175	6.34	0.00	5.0	94.8	0.2	-0.14	0.70	0.60	—	4.2	0.003	0.73	0.0	0.04	14.34	0.00	1.959	12.77	0.00	10.6	89.4	0.0	-1.92	1.54	0.73	0.67	—	48735	2988	9	0	0	0	24606	logfile
✔	7AAV	11693	2022-07-05	2020-09-04	4.2	4.27	—	4.1	0.003	0.78	0.0	0.15	12.59	0.01	2.116	1.55	0.18	8.9	91.1	0.1	-6.29	0.76	0.77	—	4.1	0.003	0.67	0.0	0.04	13.49	0.00	1.702	5.58	0.00	11.8	88.2	0.0	-1.20	0.52	0.78	0.80	—	25867	3970	19	181	3	0	0	logfile

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