Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RHZ	24472	2023-11-15	2021-07-19	4.48	7.32	5.01	7.0	0.020	1.62	32.0	0.18	21.07	0.01	2.015	9.11	0.59	3.5	96.5	0.0	-1.60	0.85	0.71	—	7.0	0.004	0.68	0.0	0.04	21.60	0.00	2.021	16.90	0.00	5.4	94.6	0.0	-0.26	2.89	0.88	0.77	—	12550	615	4	88	0	0	5875	logfile
✔	6HZ9	0315	2023-11-16	2018-10-22	4.8	4.94	4.76	4.8	0.009	1.01	0.0	0.05	14.59	0.01	1.957	3.22	0.51	2.9	97.1	0.0	-0.60	0.83	0.76	—	4.8	0.004	0.62	0.0	0.04	14.32	0.00	1.779	15.48	0.00	5.2	94.8	0.0	-0.16	2.82	0.84	0.78	—	67582	4120	26	6	12	0	33368	logfile
✔	8EXP	28658	2023-11-14	2022-10-25	4.2	4.47	4.29	4.6	0.019	1.74	0.0	0.10	10.69	0.01	2.031	5.52	0.60	3.4	96.4	0.2	-0.04	0.53	0.43	—	4.6	0.003	0.70	0.0	0.04	13.28	0.00	2.061	14.99	0.00	4.7	95.3	0.0	0.30	1.14	0.64	0.70	—	9024	1078	4	0	2	0	0	logfile
✔	8EXQ	28659	2023-11-14	2022-10-25	4.9	5.40	5.55	6.0	0.020	1.74	0.0	0.10	10.28	0.01	2.002	1.81	0.00	2.5	97.3	0.2	0.34	0.52	0.45	—	6.0	0.003	0.74	0.0	0.04	12.89	0.00	2.068	17.98	0.00	5.3	94.5	0.2	-0.50	2.54	0.58	0.63	—	9304	1108	4	0	2	0	0	logfile
✔	7WTH	32786	2023-11-13	2022-02-04	4.3	3.63	—	4.0	0.004	0.78	0.0	0.05	12.97	0.01	2.169	9.08	0.85	8.0	92.0	0.0	-2.03	0.69	0.70	—	3.8	0.004	0.77	0.0	0.05	13.51	0.00	2.154	11.58	0.00	10.6	89.2	0.2	-2.44	1.20	0.69	0.72	—	3257	421	3	0	0	0	0	logfile
✔	8AP1	15556	2023-11-15	2022-08-09	3.47	3.19	3.47	3.4	0.005	0.76	0.0	0.05	18.28	0.00	2.023	5.94	0.27	3.9	96.1	0.0	0.17	0.66	0.82	3.13	3.4	0.002	0.52	0.0	0.04	19.18	0.00	2.059	6.03	0.00	2.4	97.6	0.0	1.12	0.32	0.66	0.84	2.66	11221	1257	6	54	3	0	0	logfile
✔	6H3L	0135	2023-11-20	2018-07-19	4.2	4.88	—	3.9	0.015	1.70	0.0	0.08	11.55	0.01	2.124	5.25	0.06	7.7	91.4	0.9	-1.43	0.92	0.69	—	3.7	0.003	0.62	0.0	0.04	13.27	0.00	1.891	16.48	0.00	6.8	93.0	0.2	-1.95	1.34	0.91	0.76	—	29319	1881	3	0	0	0	14388	logfile
✔	6DVZ	8921	2023-11-18	2018-06-25	4.24	4.48	—	4.4	0.008	1.27	0.0	0.06	12.54	0.01	2.265	5.74	0.18	16.6	82.6	0.8	-5.86	0.70	0.80	—	4.4	0.003	0.81	0.0	0.04	13.96	0.00	1.621	12.77	0.00	13.5	86.1	0.4	-2.24	0.88	0.70	0.80	—	20976	2572	8	0	12	0	0	logfile
✔	7Si3	25137	2023-11-15	2021-10-12	3.19	3.21	—	3.2	0.003	1.19	0.0	0.04	13.00	0.00	2.038	2.15	0.00	1.5	98.5	0.0	3.72	0.48	0.77	1.74	3.1	0.003	0.85	0.0	0.04	14.48	0.00	1.919	4.15	0.00	2.7	97.3	0.0	2.05	0.93	0.51	0.82	2.32	13500	873	1	0	2	0	6901	logfile
✔	5KGF	8246	2023-11-16	2016-06-13	4.54	4.64	—	4.5	0.009	1.37	2.0	0.07	27.90	0.01	1.243	27.10	0.12	6.5	93.1	0.4	-4.86	0.79	0.76	—	4.5	0.005	0.73	0.0	0.04	26.58	0.01	2.134	18.68	0.00	6.4	93.3	0.3	-0.81	1.80	0.83	0.84	—	13782	986	14	290	0	0	0	logfile
✔	5JUY	8178	2023-11-19	2016-05-10	4.1	4.28	—	4.1	0.009	1.23	0.0	0.05	10.72	0.00	1.447	16.11	0.71	6.6	93.0	0.4	-3.18	0.76	0.55	—	4.1	0.003	0.66	0.0	0.04	12.04	0.00	2.092	12.45	0.00	5.3	94.6	0.1	-0.61	1.62	0.84	0.69	—	76058	9461	32	0	14	0	0	logfile
✔	7DTU	30854	2023-11-15	2021-01-06	4.4	4.54	—	3.7	0.006	0.90	0.0	0.06	14.57	0.01	2.277	6.85	0.00	9.4	90.6	0.0	-3.95	0.68	0.79	—	3.7	0.003	0.62	0.0	0.04	13.14	0.00	2.169	11.99	0.00	6.5	93.5	0.0	-0.70	1.10	0.68	0.80	—	10846	1558	8	0	14	0	0	logfile
✔	6PVQ	20497	2023-11-17	2019-07-21	4.75	4.68	—	4.6	0.008	1.32	0.0	0.06	13.01	0.01	2.244	9.74	1.15	14.4	85.2	0.4	-5.23	0.66	0.75	—	4.5	0.003	0.81	0.0	0.04	13.47	0.00	2.171	14.10	0.00	11.8	88.0	0.2	-2.25	1.10	0.67	0.77	—	17640	2160	4	0	0	0	0	logfile
✔	7X24	32957	2023-11-15	2022-02-25	3.4	2.84	3.24	3.2	0.006	1.21	0.0	0.05	15.74	0.01	2.080	8.34	0.00	4.0	96.0	0.0	0.37	0.65	0.82	2.68	3.1	0.004	0.61	0.0	0.04	16.67	0.00	1.956	9.40	0.00	4.9	95.1	0.0	0.14	0.29	0.66	0.84	2.54	10286	1263	4	0	14	0	0	logfile
✔	7ZH6	14725	2023-11-13	2022-04-05	3.67	4.10	0.95	4.2	0.006	0.90	0.0	0.06	16.13	0.01	1.607	26.36	1.26	6.4	93.6	0.0	0.99	0.54	0.73	1.36	4.2	0.003	0.73	0.0	0.04	16.88	0.00	2.217	14.09	0.00	6.0	94.0	0.0	0.95	1.12	0.54	0.74	1.24	3771	478	1	0	1	0	0	logfile
✔	6PWX	20514	2023-11-19	2019-07-23	4.2	4.53	—	4.2	0.003	0.59	0.0	0.04	27.24	0.00	2.098	13.58	3.58	4.5	95.5	0.0	-1.76	0.89	0.85	—	4.2	0.005	0.70	0.0	0.04	26.62	0.01	2.073	20.17	0.00	4.8	95.2	0.0	0.15	1.23	0.90	0.86	—	14411	1074	11	292	0	0	0	logfile
✔	6HQE	0252	2023-11-14	2018-09-24	4.4	4.34	—	4.4	0.009	1.25	0.0	0.06	9.67	0.01	2.307	6.79	0.00	4.8	95.2	0.0	-7.05	0.65	0.85	—	4.4	0.004	0.77	0.0	0.04	11.97	0.01	2.226	19.13	0.00	2.7	97.3	0.0	1.18	1.68	0.64	0.83	—	9360	1196	52	0	0	0	0	logfile
✔	8oNT	17000	2023-11-13	2023-04-03	3.66	3.95	3.45	3.9	0.006	0.67	0.0	0.04	16.01	0.01	1.908	33.89	0.87	6.7	93.3	0.0	1.63	0.63	0.79	0.81	3.9	0.003	0.54	0.0	0.04	15.80	0.00	2.083	7.87	0.00	5.6	94.4	0.0	1.77	0.33	0.63	0.77	1.05	4316	558	3	0	1	1	0	logfile
✔	7A97	11687	2023-11-21	2020-09-01	4.4	5.14	4.59	4.5	0.002	0.48	1.0	0.04	5.51	0.00	2.074	4.87	0.26	10.3	89.7	0.0	-4.43	0.88	0.78	—	4.5	0.006	0.78	0.0	0.04	9.24	0.00	2.040	16.92	0.00	5.8	94.2	0.0	-1.11	2.57	0.90	0.84	—	34626	4373	5	0	0	0	0	logfile
✔	7NXD	12637	2023-11-15	2021-03-18	4.6	8.22	6.02	6.0	0.013	1.51	0.0	0.11	9.25	0.03	1.831	64.77	1.03	4.0	96.0	0.1	-1.02	0.80	0.44	—	6.0	0.005	0.89	0.0	0.05	11.12	0.01	1.813	36.75	0.00	7.8	92.2	0.0	-1.51	1.55	0.90	0.73	—	12805	1595	18	0	48	0	0	logfile

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