Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J9P	6267	2022-12-13	2015-02-14	4.24	2.59	—	4.1	0.009	1.84	4.0	0.07	17.68	0.01	2.113	26.59	4.64	10.2	88.2	1.6	-3.58	0.73	0.78	—	4.2	0.003	1.08	0.0	0.04	13.94	0.00	2.147	16.50	0.00	8.3	91.0	0.7	-1.68	1.18	0.73	0.80	—	16952	2240	4	0	0	0	0	logfile
✔	6oER	20035	2022-12-14	2019-03-27	3.29	3.60	—	3.4	0.007	0.78	0.0	0.05	19.70	0.01	1.709	13.86	0.30	9.5	90.3	0.2	-4.65	0.85	0.84	3.60	3.3	0.003	0.64	0.0	0.04	20.48	0.00	2.211	10.46	0.00	5.2	94.7	0.1	-0.78	1.92	0.86	0.85	2.62	19482	1952	11	206	6	0	0	logfile
✔	6RZA	10060	2022-12-13	2019-06-13	4.5	4.56	4.30	4.5	0.009	1.85	16.0	0.11	17.44	0.01	2.089	9.66	6.90	4.4	94.9	0.6	-2.20	0.60	0.71	—	4.5	0.003	0.75	0.0	0.04	14.91	0.00	1.922	21.81	0.00	4.8	95.1	0.1	-0.89	2.79	0.60	0.71	—	14908	1867	9	2	6	0	0	logfile
✔	6oEN	20031	2022-12-14	2019-03-27	4.3	4.59	—	4.3	0.006	0.95	0.0	0.05	23.37	0.01	2.208	8.72	3.61	7.1	92.9	0.0	-3.86	0.85	0.83	—	4.3	0.003	0.64	0.0	0.04	21.95	0.00	2.128	13.54	0.00	6.1	93.9	0.0	-0.67	2.49	0.86	0.83	—	19649	1998	12	206	3	0	0	logfile
✔	6QVB	4646	2022-12-12	2019-03-01	4.34	5.06	4.26	4.4	0.010	1.72	8.0	0.09	12.75	0.01	2.153	12.31	3.10	10.3	89.5	0.2	-4.45	0.67	0.75	—	4.4	0.003	0.96	0.0	0.05	12.46	0.01	2.087	20.57	0.00	9.0	91.0	0.0	-0.55	1.41	0.67	0.75	—	9237	1193	2	0	0	0	0	logfile
✔	6CoZ	7545	2022-12-11	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.82	0.0	0.04	4.96	0.00	2.368	4.42	0.00	8.3	91.7	0.0	-1.63	1.58	0.82	0.77	—	1586	320	2	0	0	0	0	logfile
✔	6R1U	4705	2022-12-14	2019-03-15	4.36	6.44	—	3.8	0.009	1.04	0.0	0.06	25.65	0.02	0.544	12.09	6.26	4.7	94.1	1.2	-2.99	0.73	0.45	—	3.9	0.003	0.66	0.0	0.04	25.35	0.00	2.074	12.99	0.00	2.6	97.2	0.1	0.91	1.09	0.89	0.78	—	18394	1550	14	294	4	0	0	logfile
✔	6oEo	20032	2022-12-14	2019-03-27	3.69	4.00	—	3.8	0.005	0.72	0.0	0.05	21.45	0.00	1.892	14.52	0.12	8.2	91.7	0.2	-4.21	0.84	0.84	2.52	3.8	0.003	0.67	0.0	0.04	21.79	0.00	2.158	11.33	0.00	4.9	95.0	0.1	-0.81	0.44	0.84	0.83	2.26	19516	1970	11	206	6	0	0	logfile
✔	5FYW	3378	2022-12-21	2016-03-10	4.35	4.82	—	4.3	0.010	1.14	2.0	0.07	12.79	0.01	0.245	17.16	0.77	5.4	94.1	0.5	-2.84	0.80	0.75	—	4.3	0.003	0.74	0.0	0.04	14.42	0.00	1.963	18.43	0.00	6.1	93.8	0.2	0.21	2.88	0.83	0.81	—	41710	5176	30	94	11	0	0	logfile
✔	6MRU	9213	2022-12-12	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.002	0.46	0.0	0.03	13.26	0.00	2.192	3.53	0.00	0.6	99.4	0.0	5.66	3.08	0.75	0.86	1.81	29107	3705	13	0	0	0	0	logfile
✔	6GC7	4382	2022-12-11	2018-04-17	4.3	4.85	—	4.4	0.003	0.67	0.0	0.03	13.13	0.00	2.251	5.14	0.28	5.9	93.9	0.1	-4.27	0.76	0.61	—	4.4	0.008	0.74	0.0	0.04	15.49	0.01	1.966	30.02	0.00	9.7	90.2	0.1	-2.10	1.66	0.91	0.87	—	54410	1738	17	1901	0	0	0	logfile
✔	3J1B	5391	2022-12-12	2012-02-06	4.9	5.01	—	4.8	0.034	3.60	502.0	0.21	17.58	0.03	2.352	1.76	4.08	6.4	90.1	3.5	-3.28	0.67	0.51	—	4.8	0.003	0.78	0.0	0.05	14.62	0.01	2.174	15.69	0.00	4.8	94.6	0.6	0.77	2.25	0.79	0.70	—	62992	8304	16	0	0	0	0	logfile
✔	6QS4	4621	2022-12-16	2019-02-20	4.2	7.28	4.28	6.5	0.009	1.07	0.0	0.06	10.54	0.01	2.235	8.01	0.10	8.4	91.6	0.0	-3.77	0.83	0.65	—	4.1	0.003	0.66	0.0	0.04	11.94	0.00	2.088	20.51	0.00	5.4	94.6	0.0	0.28	1.07	0.91	0.84	—	28839	3622	13	0	11	0	0	logfile
✔	4UQ8	2676	2022-12-16	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	67.37	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.54	0.0	0.41	5.50	0.00	2.103	29.65	0.00	0.0	0.0	0.0	—	2.11	0.61	0.83	—	28647	33	54	0	5686	0	0	logfile
✔	6GC6	4381	2022-12-12	2018-04-17	4.3	5.02	—	4.5	0.003	0.66	0.0	0.03	12.88	0.00	2.229	5.32	0.00	6.0	93.9	0.1	-3.94	0.74	0.57	—	4.5	0.009	0.73	0.0	0.04	15.64	0.00	1.990	29.10	0.00	9.6	90.4	0.0	-2.05	2.14	0.91	0.86	—	61404	2118	19	2092	0	0	0	logfile
✔	5TCP	8398	2022-12-14	2016-09-15	4.3	3.93	—	4.0	0.013	1.38	0.0	0.07	9.90	0.01	2.479	1.03	0.00	3.5	95.5	1.1	-0.87	0.77	0.79	—	3.9	0.003	0.58	0.0	0.04	12.65	0.00	2.205	6.61	0.00	3.3	96.5	0.3	1.91	0.86	0.80	0.84	—	72888	9072	48	0	0	0	0	logfile
✔	6DFG	7875	2022-12-14	2018-05-14	4.42	4.61	4.39	4.4	0.007	1.04	0.0	0.06	10.31	0.01	2.240	7.83	0.29	11.0	89.0	0.0	-4.24	0.79	0.81	—	4.4	0.004	0.74	0.0	0.05	11.36	0.00	2.110	17.13	0.00	10.8	89.0	0.1	-2.22	1.29	0.79	0.83	—	20190	2355	48	0	135	0	0	logfile
✔	6MRW	9214	2022-12-12	2018-10-15	4.3	4.76	—	4.3	0.006	0.98	0.0	0.04	10.35	0.01	2.080	4.61	0.41	2.1	97.9	0.0	-0.19	0.82	0.84	—	4.3	0.002	0.48	0.0	0.03	11.74	0.00	2.080	6.81	0.00	1.8	98.2	0.0	6.05	1.27	0.83	0.86	—	31346	3990	14	0	0	0	0	logfile
✔	6o1o	0454	2022-12-13	2019-02-21	3.8	4.00	—	3.6	0.008	1.55	0.0	0.07	15.00	0.01	2.295	4.58	0.00	0.0	0.0	0.0	—	0.72	0.70	—	3.6	0.012	1.72	0.0	0.07	13.69	0.00	1.998	30.49	0.00	0.0	0.0	0.0	—	1.70	0.78	0.76	—	15193	0	14	66	2757	0	0	logfile
✔	6UM5	20817	2022-12-14	2019-10-09	4.2	4.70	—	4.3	0.010	1.50	27.0	0.12	12.65	0.02	2.022	7.42	4.06	6.0	92.8	1.2	-1.89	0.69	0.66	—	4.2	0.005	0.80	0.0	0.05	12.63	0.00	2.112	14.63	0.00	9.3	90.4	0.3	-1.84	0.92	0.81	0.83	—	20562	2487	36	0	96	0	0	logfile

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