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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3J9P | 6267 | 2022-12-13 | 2015-02-14 | 4.24 | 2.59 | — | 4.1 | 0.009 | 1.84 | 4.0 | 0.07 | 17.68 | 0.01 | 2.113 | 26.59 | 4.64 | 10.2 | 88.2 | 1.6 | -3.58 | 0.73 | 0.78 | — | 4.2 | 0.003 | 1.08 | 0.0 | 0.04 | 13.94 | 0.00 | 2.147 | 16.50 | 0.00 | 8.3 | 91.0 | 0.7 | -1.68 | 1.18 | 0.73 | 0.80 | — | 16952 | 2240 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oER | 20035 | 2022-12-14 | 2019-03-27 | 3.29 | 3.60 | — | 3.4 | 0.007 | 0.78 | 0.0 | 0.05 | 19.70 | 0.01 | 1.709 | 13.86 | 0.30 | 9.5 | 90.3 | 0.2 | -4.65 | 0.85 | 0.84 | 3.60 | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 20.48 | 0.00 | 2.211 | 10.46 | 0.00 | 5.2 | 94.7 | 0.1 | -0.78 | 1.92 | 0.86 | 0.85 | 2.62 | 19482 | 1952 | 11 | 206 | 6 | 0 | 0 | logfile |
✔ | 6RZA | 10060 | 2022-12-13 | 2019-06-13 | 4.5 | 4.56 | 4.30 | 4.5 | 0.009 | 1.85 | 16.0 | 0.11 | 17.44 | 0.01 | 2.089 | 9.66 | 6.90 | 4.4 | 94.9 | 0.6 | -2.20 | 0.60 | 0.71 | — | 4.5 | 0.003 | 0.75 | 0.0 | 0.04 | 14.91 | 0.00 | 1.922 | 21.81 | 0.00 | 4.8 | 95.1 | 0.1 | -0.89 | 2.79 | 0.60 | 0.71 | — | 14908 | 1867 | 9 | 2 | 6 | 0 | 0 | logfile |
✔ | 6oEN | 20031 | 2022-12-14 | 2019-03-27 | 4.3 | 4.59 | — | 4.3 | 0.006 | 0.95 | 0.0 | 0.05 | 23.37 | 0.01 | 2.208 | 8.72 | 3.61 | 7.1 | 92.9 | 0.0 | -3.86 | 0.85 | 0.83 | — | 4.3 | 0.003 | 0.64 | 0.0 | 0.04 | 21.95 | 0.00 | 2.128 | 13.54 | 0.00 | 6.1 | 93.9 | 0.0 | -0.67 | 2.49 | 0.86 | 0.83 | — | 19649 | 1998 | 12 | 206 | 3 | 0 | 0 | logfile |
✔ | 6QVB | 4646 | 2022-12-12 | 2019-03-01 | 4.34 | 5.06 | 4.26 | 4.4 | 0.010 | 1.72 | 8.0 | 0.09 | 12.75 | 0.01 | 2.153 | 12.31 | 3.10 | 10.3 | 89.5 | 0.2 | -4.45 | 0.67 | 0.75 | — | 4.4 | 0.003 | 0.96 | 0.0 | 0.05 | 12.46 | 0.01 | 2.087 | 20.57 | 0.00 | 9.0 | 91.0 | 0.0 | -0.55 | 1.41 | 0.67 | 0.75 | — | 9237 | 1193 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CoZ | 7545 | 2022-12-11 | 2018-03-13 | 3.36 | 4.78 | — | 4.7 | 0.009 | 1.71 | 0.0 | 0.07 | 5.63 | 0.01 | 2.541 | 0.00 | 0.00 | 3.2 | 96.2 | 0.6 | -2.49 | 0.78 | 0.68 | — | 4.4 | 0.003 | 0.82 | 0.0 | 0.04 | 4.96 | 0.00 | 2.368 | 4.42 | 0.00 | 8.3 | 91.7 | 0.0 | -1.63 | 1.58 | 0.82 | 0.77 | — | 1586 | 320 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R1U | 4705 | 2022-12-14 | 2019-03-15 | 4.36 | 6.44 | — | 3.8 | 0.009 | 1.04 | 0.0 | 0.06 | 25.65 | 0.02 | 0.544 | 12.09 | 6.26 | 4.7 | 94.1 | 1.2 | -2.99 | 0.73 | 0.45 | — | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 25.35 | 0.00 | 2.074 | 12.99 | 0.00 | 2.6 | 97.2 | 0.1 | 0.91 | 1.09 | 0.89 | 0.78 | — | 18394 | 1550 | 14 | 294 | 4 | 0 | 0 | logfile |
✔ | 6oEo | 20032 | 2022-12-14 | 2019-03-27 | 3.69 | 4.00 | — | 3.8 | 0.005 | 0.72 | 0.0 | 0.05 | 21.45 | 0.00 | 1.892 | 14.52 | 0.12 | 8.2 | 91.7 | 0.2 | -4.21 | 0.84 | 0.84 | 2.52 | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 21.79 | 0.00 | 2.158 | 11.33 | 0.00 | 4.9 | 95.0 | 0.1 | -0.81 | 0.44 | 0.84 | 0.83 | 2.26 | 19516 | 1970 | 11 | 206 | 6 | 0 | 0 | logfile |
✔ | 5FYW | 3378 | 2022-12-21 | 2016-03-10 | 4.35 | 4.82 | — | 4.3 | 0.010 | 1.14 | 2.0 | 0.07 | 12.79 | 0.01 | 0.245 | 17.16 | 0.77 | 5.4 | 94.1 | 0.5 | -2.84 | 0.80 | 0.75 | — | 4.3 | 0.003 | 0.74 | 0.0 | 0.04 | 14.42 | 0.00 | 1.963 | 18.43 | 0.00 | 6.1 | 93.8 | 0.2 | 0.21 | 2.88 | 0.83 | 0.81 | — | 41710 | 5176 | 30 | 94 | 11 | 0 | 0 | logfile |
✔ | 6MRU | 9213 | 2022-12-12 | 2018-10-15 | 3.2 | 3.31 | — | 3.3 | 0.005 | 0.73 | 0.0 | 0.04 | 10.16 | 0.01 | 2.297 | 2.27 | 0.82 | 1.4 | 98.6 | 0.0 | -1.59 | 0.72 | 0.83 | 3.34 | 3.3 | 0.002 | 0.46 | 0.0 | 0.03 | 13.26 | 0.00 | 2.192 | 3.53 | 0.00 | 0.6 | 99.4 | 0.0 | 5.66 | 3.08 | 0.75 | 0.86 | 1.81 | 29107 | 3705 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GC7 | 4382 | 2022-12-11 | 2018-04-17 | 4.3 | 4.85 | — | 4.4 | 0.003 | 0.67 | 0.0 | 0.03 | 13.13 | 0.00 | 2.251 | 5.14 | 0.28 | 5.9 | 93.9 | 0.1 | -4.27 | 0.76 | 0.61 | — | 4.4 | 0.008 | 0.74 | 0.0 | 0.04 | 15.49 | 0.01 | 1.966 | 30.02 | 0.00 | 9.7 | 90.2 | 0.1 | -2.10 | 1.66 | 0.91 | 0.87 | — | 54410 | 1738 | 17 | 1901 | 0 | 0 | 0 | logfile |
✔ | 3J1B | 5391 | 2022-12-12 | 2012-02-06 | 4.9 | 5.01 | — | 4.8 | 0.034 | 3.60 | 502.0 | 0.21 | 17.58 | 0.03 | 2.352 | 1.76 | 4.08 | 6.4 | 90.1 | 3.5 | -3.28 | 0.67 | 0.51 | — | 4.8 | 0.003 | 0.78 | 0.0 | 0.05 | 14.62 | 0.01 | 2.174 | 15.69 | 0.00 | 4.8 | 94.6 | 0.6 | 0.77 | 2.25 | 0.79 | 0.70 | — | 62992 | 8304 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QS4 | 4621 | 2022-12-16 | 2019-02-20 | 4.2 | 7.28 | 4.28 | 6.5 | 0.009 | 1.07 | 0.0 | 0.06 | 10.54 | 0.01 | 2.235 | 8.01 | 0.10 | 8.4 | 91.6 | 0.0 | -3.77 | 0.83 | 0.65 | — | 4.1 | 0.003 | 0.66 | 0.0 | 0.04 | 11.94 | 0.00 | 2.088 | 20.51 | 0.00 | 5.4 | 94.6 | 0.0 | 0.28 | 1.07 | 0.91 | 0.84 | — | 28839 | 3622 | 13 | 0 | 11 | 0 | 0 | logfile |
✔ | 4UQ8 | 2676 | 2022-12-16 | 2014-06-21 | 4.95 | 5.05 | 4.64 | 4.9 | 0.012 | 2.07 | 23.0 | 1.38 | 6.71 | 0.01 | 1.032 | 67.37 | 25.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.75 | — | 4.9 | 0.013 | 2.54 | 0.0 | 0.41 | 5.50 | 0.00 | 2.103 | 29.65 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.11 | 0.61 | 0.83 | — | 28647 | 33 | 54 | 0 | 5686 | 0 | 0 | logfile |
✔ | 6GC6 | 4381 | 2022-12-12 | 2018-04-17 | 4.3 | 5.02 | — | 4.5 | 0.003 | 0.66 | 0.0 | 0.03 | 12.88 | 0.00 | 2.229 | 5.32 | 0.00 | 6.0 | 93.9 | 0.1 | -3.94 | 0.74 | 0.57 | — | 4.5 | 0.009 | 0.73 | 0.0 | 0.04 | 15.64 | 0.00 | 1.990 | 29.10 | 0.00 | 9.6 | 90.4 | 0.0 | -2.05 | 2.14 | 0.91 | 0.86 | — | 61404 | 2118 | 19 | 2092 | 0 | 0 | 0 | logfile |
✔ | 5TCP | 8398 | 2022-12-14 | 2016-09-15 | 4.3 | 3.93 | — | 4.0 | 0.013 | 1.38 | 0.0 | 0.07 | 9.90 | 0.01 | 2.479 | 1.03 | 0.00 | 3.5 | 95.5 | 1.1 | -0.87 | 0.77 | 0.79 | — | 3.9 | 0.003 | 0.58 | 0.0 | 0.04 | 12.65 | 0.00 | 2.205 | 6.61 | 0.00 | 3.3 | 96.5 | 0.3 | 1.91 | 0.86 | 0.80 | 0.84 | — | 72888 | 9072 | 48 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DFG | 7875 | 2022-12-14 | 2018-05-14 | 4.42 | 4.61 | 4.39 | 4.4 | 0.007 | 1.04 | 0.0 | 0.06 | 10.31 | 0.01 | 2.240 | 7.83 | 0.29 | 11.0 | 89.0 | 0.0 | -4.24 | 0.79 | 0.81 | — | 4.4 | 0.004 | 0.74 | 0.0 | 0.05 | 11.36 | 0.00 | 2.110 | 17.13 | 0.00 | 10.8 | 89.0 | 0.1 | -2.22 | 1.29 | 0.79 | 0.83 | — | 20190 | 2355 | 48 | 0 | 135 | 0 | 0 | logfile |
✔ | 6MRW | 9214 | 2022-12-12 | 2018-10-15 | 4.3 | 4.76 | — | 4.3 | 0.006 | 0.98 | 0.0 | 0.04 | 10.35 | 0.01 | 2.080 | 4.61 | 0.41 | 2.1 | 97.9 | 0.0 | -0.19 | 0.82 | 0.84 | — | 4.3 | 0.002 | 0.48 | 0.0 | 0.03 | 11.74 | 0.00 | 2.080 | 6.81 | 0.00 | 1.8 | 98.2 | 0.0 | 6.05 | 1.27 | 0.83 | 0.86 | — | 31346 | 3990 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6o1o | 0454 | 2022-12-13 | 2019-02-21 | 3.8 | 4.00 | — | 3.6 | 0.008 | 1.55 | 0.0 | 0.07 | 15.00 | 0.01 | 2.295 | 4.58 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.72 | 0.70 | — | 3.6 | 0.012 | 1.72 | 0.0 | 0.07 | 13.69 | 0.00 | 1.998 | 30.49 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.70 | 0.78 | 0.76 | — | 15193 | 0 | 14 | 66 | 2757 | 0 | 0 | logfile |
✔ | 6UM5 | 20817 | 2022-12-14 | 2019-10-09 | 4.2 | 4.70 | — | 4.3 | 0.010 | 1.50 | 27.0 | 0.12 | 12.65 | 0.02 | 2.022 | 7.42 | 4.06 | 6.0 | 92.8 | 1.2 | -1.89 | 0.69 | 0.66 | — | 4.2 | 0.005 | 0.80 | 0.0 | 0.05 | 12.63 | 0.00 | 2.112 | 14.63 | 0.00 | 9.3 | 90.4 | 0.3 | -1.84 | 0.92 | 0.81 | 0.83 | — | 20562 | 2487 | 36 | 0 | 96 | 0 | 0 | logfile |