Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6H3J	0134	2022-12-14	2018-07-18	3.7	3.83	—	3.7	0.007	0.87	0.0	0.05	10.17	0.00	2.025	43.43	0.05	23.8	76.2	0.0	-6.63	0.77	0.85	3.89	3.7	0.005	0.65	0.0	0.04	13.39	0.00	1.860	56.32	0.32	21.3	78.7	0.0	-4.95	2.68	0.78	0.86	2.86	20301	2511	3	0	0	0	212	logfile
✔	7KXY	23067	2022-12-12	2020-12-05	4.4	4.55	4.44	4.5	0.004	0.82	0.0	0.05	15.13	0.01	2.197	19.44	7.18	26.0	69.8	4.2	-5.90	0.63	0.60	—	4.5	0.004	0.88	0.0	0.05	14.71	0.01	2.101	25.46	0.00	18.3	81.6	0.1	-4.95	0.63	0.63	0.61	—	9510	1181	2	0	0	0	0	logfile
✔	7UMQ	26607	2022-12-11	2022-04-07	3.29	3.64	3.16	4.2	0.023	2.11	0.0	0.10	9.85	0.01	2.540	3.14	0.00	10.0	90.0	0.0	-3.35	0.51	0.74	5.90	3.8	0.003	0.80	0.0	0.04	14.16	0.00	2.326	16.18	1.54	10.3	89.7	0.0	-4.95	3.38	0.43	0.75	4.26	4380	620	10	0	0	0	0	logfile
✔	5o3T	3743	2022-12-12	2017-05-24	3.4	3.55	3.25	4.0	0.007	0.92	0.0	0.06	10.15	0.01	2.301	15.23	1.56	14.1	85.9	0.0	-6.47	0.53	0.63	2.13	3.5	0.003	0.64	0.0	0.05	12.81	0.00	2.146	10.56	0.16	10.4	89.6	0.0	-4.94	1.53	0.50	0.71	3.01	11360	730	10	0	0	0	5790	logfile
✔	7X83	33054	2022-12-11	2022-03-11	3.4	3.15	2.87	3.5	0.009	0.82	0.0	0.06	13.35	0.00	2.217	17.05	0.00	15.8	84.2	0.0	-5.71	0.38	0.84	4.55	3.6	0.004	0.69	0.0	0.05	15.07	0.00	2.252	12.90	1.06	11.5	88.5	0.0	-4.93	0.59	0.38	0.84	4.64	3258	405	3	0	0	0	0	logfile
✔	7YAT	33719	2022-12-11	2022-06-28	2.2	2.33	1.39	2.3	0.009	1.06	0.0	0.06	14.84	0.00	2.267	9.86	0.00	4.3	95.7	0.0	-4.79	0.61	0.88	7.98	2.3	0.003	0.87	0.0	0.05	15.00	0.01	2.271	12.08	0.00	4.5	95.5	0.0	-4.91	0.43	0.65	0.92	6.95	4129	600	45	0	0	25	0	logfile
✔	7V4B	31706	2022-12-11	2021-08-12	3.1	3.04	—	3.1	0.006	0.60	0.0	0.05	14.55	0.00	2.375	15.32	0.00	13.2	86.8	0.0	-5.99	0.41	0.69	2.66	3.1	0.008	0.78	0.0	0.05	17.31	0.00	2.146	10.95	0.60	18.9	81.1	0.0	-4.89	0.56	0.41	0.69	2.54	3336	480	6	0	0	0	0	logfile
✔	7V48	31703	2022-12-11	2021-08-12	3.0	2.27	—	3.3	0.002	0.48	0.0	0.05	12.91	0.00	2.295	8.64	0.00	9.8	90.2	0.0	-5.61	0.37	0.75	4.10	3.3	0.004	0.67	0.0	0.05	14.30	0.00	2.225	5.45	3.03	16.7	83.3	0.0	-4.88	0.50	0.38	0.76	4.90	2598	378	6	0	0	0	0	logfile
✔	6VW2	21410	2022-12-11	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.005	0.96	0.0	0.05	14.94	0.00	2.171	15.12	0.95	19.5	80.5	0.0	-4.88	0.44	0.40	0.72	1.55	1800	240	10	0	0	0	0	logfile
✔	6L1U	0803	2022-12-12	2019-09-30	3.37	3.54	—	3.5	0.011	0.90	0.0	0.06	15.32	0.00	2.138	15.24	0.00	15.8	84.2	0.0	-6.06	0.47	0.83	2.58	3.5	0.005	0.71	0.0	0.05	16.53	0.00	2.169	12.36	1.37	15.9	84.1	0.0	-4.87	1.97	0.48	0.85	2.64	10515	1500	15	0	0	0	0	logfile
✔	7Q67	13854	2022-12-11	2021-11-05	3.37	3.41	2.44	3.4	0.020	2.21	0.0	0.14	14.47	0.01	2.280	12.16	8.00	16.1	83.9	0.0	-4.98	0.51	0.71	2.52	3.5	0.003	0.89	0.0	0.04	18.34	0.00	2.105	22.53	0.73	18.2	81.8	0.0	-4.85	2.31	0.44	0.68	0.65	2618	363	11	0	0	0	0	logfile
✔	6Y1A	10669	2022-12-11	2020-02-11	4.2	3.60	1.84	4.3	0.005	1.09	0.0	0.07	9.42	0.00	2.509	15.01	0.00	4.3	95.7	0.0	-4.99	0.53	0.63	—	4.2	0.005	0.76	0.0	0.04	11.27	0.00	2.048	15.89	0.00	9.8	90.2	0.0	-4.83	1.55	0.57	0.76	—	2960	400	32	0	16	0	0	logfile
✔	6SST	10305	2022-12-11	2019-09-09	3.4	3.46	—	3.4	0.009	0.94	0.0	0.07	16.79	0.00	2.430	5.73	2.13	10.1	89.9	0.0	-4.47	0.56	0.80	6.33	3.4	0.005	0.69	0.0	0.05	15.22	0.00	2.342	10.76	0.21	14.6	85.4	0.0	-4.82	0.49	0.59	0.84	5.27	4900	730	10	0	0	0	0	logfile
✔	6R4R	4727	2022-12-11	2019-03-23	3.4	3.01	1.77	3.8	0.008	1.43	0.0	0.08	10.87	0.01	2.308	6.73	0.00	12.0	88.0	0.0	-5.16	0.32	0.64	5.08	3.7	0.005	0.82	0.0	0.05	16.51	0.00	2.111	15.74	2.27	9.1	90.9	0.0	-4.78	3.89	0.31	0.67	3.65	4312	539	7	0	0	0	0	logfile
✔	7RL4	24514	2022-12-11	2021-07-23	2.86	2.50	—	3.1	0.015	1.16	0.0	0.07	16.04	0.01	2.535	12.04	0.00	12.5	87.5	0.0	-4.62	0.39	0.82	4.55	3.0	0.012	1.00	0.0	0.05	17.03	0.01	2.258	17.96	4.75	7.8	92.2	0.0	-4.76	1.13	0.39	0.84	4.87	4620	680	20	0	0	0	0	logfile
✔	6VE2	21152	2022-12-16	2019-12-28	4.3	4.80	4.34	4.2	0.006	1.23	0.0	0.07	5.37	0.01	2.173	16.97	0.00	4.7	94.9	0.5	-0.93	0.83	0.70	—	4.2	0.007	1.24	0.0	0.05	10.04	0.01	2.049	33.59	0.00	21.9	77.6	0.6	-4.75	1.35	0.89	0.76	—	30198	6153	21	0	0	0	0	logfile
✔	6oKS	20103	2022-12-13	2019-04-15	4.2	4.44	—	4.3	0.008	1.15	0.0	0.05	17.36	0.01	2.299	5.88	9.80	18.3	81.7	0.0	-5.50	0.78	0.81	—	4.3	0.004	0.85	0.0	0.05	14.28	0.01	2.144	15.32	0.00	17.5	82.5	0.0	-4.73	2.22	0.79	0.82	—	13244	1610	14	0	0	0	0	logfile
✔	7L7H	23212	2022-12-11	2020-12-28	4.0	2.39	—	4.0	0.008	1.47	0.0	0.08	15.10	0.01	2.199	13.87	3.53	36.3	63.7	0.0	-6.00	0.47	0.60	—	4.0	0.005	0.99	0.0	0.06	16.55	0.00	2.113	18.49	1.96	32.1	67.9	0.0	-4.69	0.91	0.51	0.65	—	2430	352	8	0	0	0	0	logfile
✔	7oZG	13123	2022-12-11	2021-06-28	3.3	3.21	2.71	3.6	0.023	1.83	0.0	0.10	12.75	0.01	2.254	17.09	0.00	8.7	91.3	0.0	-4.01	0.40	0.73	3.72	3.7	0.006	0.80	0.0	0.05	15.38	0.00	2.315	16.60	0.82	15.5	84.5	0.0	-4.68	3.41	0.35	0.68	4.71	4960	730	10	0	0	0	0	logfile
✔	7V4C	31707	2022-12-11	2021-08-12	3.3	2.93	—	3.4	0.008	0.75	0.0	0.06	12.47	0.00	2.305	12.50	0.00	20.0	80.0	0.0	-6.54	0.40	0.83	2.37	3.4	0.003	0.61	0.0	0.05	17.76	0.00	2.159	3.79	0.76	7.8	92.2	0.0	-4.65	1.18	0.39	0.82	3.35	1287	186	3	0	0	0	0	logfile

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