Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RFP	24444	2023-04-20	2021-07-14	4.4	4.57	—	4.3	0.014	2.06	8.0	0.12	7.12	0.01	1.581	3.60	8.00	9.5	87.5	3.0	-1.46	0.68	0.61	—	4.3	0.004	0.92	0.0	0.04	7.02	0.00	2.177	9.44	0.00	14.9	84.6	0.5	-3.98	1.49	0.80	0.75	—	5532	1114	6	0	0	0	0	logfile
✔	7BW7	30229	2023-04-21	2020-04-13	4.1	4.55	4.28	4.4	0.008	1.06	0.0	0.06	16.20	0.01	2.050	40.13	0.00	23.4	76.6	0.0	-5.62	0.73	0.67	—	4.4	0.003	0.79	0.0	0.05	15.12	0.00	2.151	18.52	0.00	13.1	86.9	0.0	-3.97	0.75	0.70	0.62	—	8824	1091	3	0	0	0	0	logfile
✔	6ZQA	11357	2023-04-26	2020-07-09	4.4	4.48	—	4.4	0.006	1.11	1.0	0.06	14.62	0.01	1.928	5.28	0.00	9.3	90.4	0.3	-3.27	0.77	0.74	—	4.4	0.011	1.41	0.0	0.06	16.91	0.01	1.638	24.83	0.00	20.3	79.5	0.2	-3.96	1.34	0.76	0.75	—	125991	19047	63	1485	5	0	0	logfile
✔	6NYG	0543	2023-04-26	2019-02-11	3.9	4.55	—	3.9	0.005	0.97	0.0	0.06	10.45	0.00	2.242	9.18	0.16	14.1	85.9	0.0	-4.66	0.82	0.64	0.83	3.9	0.003	0.73	0.0	0.05	13.61	0.00	2.093	18.96	0.18	11.3	88.7	0.0	-3.94	1.29	0.83	0.68	0.96	68664	9000	12	0	0	0	0	logfile
✔	6SoF	10273	2023-04-29	2019-08-29	4.3	4.23	4.20	4.1	0.006	0.93	0.0	0.05	14.59	0.01	2.017	10.51	0.62	17.7	82.3	0.0	-5.47	0.82	0.72	—	4.1	0.003	0.67	0.0	0.04	13.36	0.00	1.934	15.84	0.00	15.3	84.7	0.0	-3.90	1.45	0.82	0.72	—	30333	1966	12	0	0	0	14564	logfile
✔	5YYS	6859	2023-04-26	2017-12-11	4.2	4.57	—	4.1	0.016	2.27	0.0	0.10	15.30	0.01	2.201	22.76	2.34	27.3	70.1	2.6	-5.98	0.85	0.71	—	4.1	0.004	1.19	0.0	0.06	12.63	0.01	2.045	33.33	0.00	24.1	75.3	0.5	-3.90	1.68	0.86	0.72	—	24044	3244	4	0	0	0	0	logfile
✔	6YW7	10960	2023-04-20	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	2.17	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	1.01	0.0	0.02	5.70	0.00	2.420	14.13	0.00	13.2	86.6	0.2	-3.90	6.17	0.81	0.75	—	5426	1788	9	0	2	0	0	logfile
✔	6UM2	20816	2023-04-22	2019-10-08	4.32	4.49	—	4.3	0.013	1.78	10.0	0.09	15.37	0.01	1.505	10.33	0.41	6.7	92.9	0.4	-4.93	0.73	0.67	—	4.3	0.005	0.83	0.0	0.05	13.78	0.01	2.093	16.94	0.00	14.1	85.8	0.1	-3.87	1.39	0.80	0.76	—	13094	1686	3	0	7	0	0	logfile
✔	5XLP	6731	2023-04-21	2017-05-11	4.2	4.23	—	4.2	0.009	1.36	0.0	0.06	14.75	0.01	2.194	12.48	0.57	18.2	81.4	0.5	-5.53	0.62	0.58	—	4.1	0.003	0.91	0.0	0.04	15.84	0.01	1.956	18.56	0.11	15.4	84.4	0.2	-3.85	2.41	0.65	0.63	—	9952	1343	6	24	0	0	0	logfile
✔	6GJ1	0009	2023-04-22	2018-05-15	4.7	4.83	—	4.4	0.010	1.51	5.0	0.07	11.65	0.01	0.341	23.90	0.72	18.3	81.3	0.4	-5.15	0.83	0.71	—	4.4	0.003	0.89	0.0	0.05	12.57	0.01	2.086	22.39	0.00	16.4	83.4	0.1	-3.83	1.16	0.85	0.76	—	13013	1638	4	0	0	0	0	logfile
✔	6TEB	10479	2023-04-22	2019-11-11	4.14	4.24	—	4.1	0.007	1.14	0.0	0.07	13.67	0.01	2.286	20.47	1.20	16.7	83.1	0.2	-5.28	0.73	0.75	—	4.1	0.004	0.97	0.0	0.05	14.11	0.01	2.089	26.69	0.56	12.3	87.7	0.0	-3.83	2.19	0.75	0.79	—	12168	1584	12	0	0	0	0	logfile
✔	7Uo5	26640	2023-04-23	2022-04-12	3.1	3.62	3.02	3.0	0.015	2.22	0.0	0.12	27.60	0.06	2.328	2.33	1.02	6.4	92.7	0.9	-2.73	0.80	0.60	3.19	3.0	0.005	0.85	0.0	0.05	26.39	0.01	1.786	36.13	0.00	13.6	85.5	0.9	-3.83	1.53	0.81	0.66	1.12	13979	112	2	373	7	0	5024	logfile
✔	7WP1	32666	2023-04-20	2022-01-22	3.77	3.91	—	3.9	0.006	1.17	0.0	0.07	14.56	0.02	2.338	3.88	0.00	12.2	87.5	0.2	-5.40	0.64	0.78	2.71	3.9	0.004	0.80	0.0	0.05	16.26	0.00	2.064	13.18	1.13	11.8	88.2	0.0	-3.82	0.96	0.63	0.78	2.11	3305	423	4	0	2	0	0	logfile
✔	7WoP	32654	2023-04-20	2022-01-22	3.51	2.51	—	3.4	0.002	0.54	0.0	0.04	10.83	0.00	2.203	10.97	9.21	11.4	88.6	0.0	-4.81	0.64	0.66	1.96	3.4	0.005	0.85	0.0	0.05	14.87	0.01	2.063	24.57	0.72	18.5	81.5	0.0	-3.82	1.29	0.65	0.69	2.10	5107	669	3	0	0	0	0	logfile
✔	5TCU	8402	2023-04-28	2016-09-15	3.9	4.02	—	3.9	0.010	1.21	0.0	0.06	18.30	0.01	2.000	6.31	0.88	17.4	82.4	0.2	-5.50	0.70	0.79	2.09	3.9	0.004	0.70	0.0	0.04	18.32	0.00	1.829	13.13	0.94	14.0	86.0	0.0	-3.80	0.42	0.71	0.83	1.16	133876	5134	56	4494	130	0	0	logfile
✔	6CET	7465	2023-04-23	2018-02-12	4.4	4.41	—	4.3	0.007	1.42	0.0	0.07	13.40	0.01	2.251	8.50	0.96	19.7	80.1	0.2	-5.52	0.67	0.62	—	4.3	0.004	0.94	0.0	0.05	14.01	0.01	2.112	19.33	0.06	18.7	81.3	0.0	-3.78	1.59	0.68	0.63	—	14012	1741	3	0	0	0	0	logfile
✔	7N88	24233	2023-04-21	2021-06-14	3.7	3.90	—	3.9	0.008	1.04	0.0	0.05	15.40	0.01	1.680	28.91	0.81	21.4	78.3	0.2	-6.39	0.74	0.73	1.71	3.9	0.004	0.84	0.0	0.05	16.61	0.01	1.920	18.60	0.81	13.5	86.5	0.0	-3.78	1.20	0.73	0.71	1.51	9402	1220	2	0	4	0	0	logfile
✔	6Y7C	10713	2023-04-29	2020-02-28	3.8	5.42	3.84	2.8	0.015	1.44	1.0	0.06	18.67	0.02	0.193	10.34	1.00	14.3	85.4	0.3	-5.44	0.89	0.71	0.41	2.6	0.013	0.93	0.0	0.04	18.90	0.01	1.977	36.16	0.35	15.8	84.1	0.1	-3.77	2.58	0.92	0.79	0.35	79690	5381	34	1735	0	0	0	logfile
✔	6SJ6	10212	2023-04-28	2019-08-12	3.23	3.28	—	3.2	0.010	1.05	0.0	0.06	17.17	0.01	1.886	4.33	0.14	17.7	82.2	0.2	-6.09	0.78	0.78	3.43	3.2	0.005	0.78	0.0	0.04	17.22	0.01	1.839	8.44	0.51	12.8	87.2	0.0	-3.73	2.00	0.80	0.80	2.36	78296	2611	27	2697	59	0	0	logfile
✔	6VE2	21152	2023-04-29	2019-12-28	4.3	4.80	4.34	4.2	0.006	1.23	0.0	0.07	5.37	0.01	2.173	16.97	0.00	4.7	94.9	0.5	-0.93	0.83	0.70	—	4.2	0.004	0.94	0.0	0.05	7.57	0.00	2.114	14.88	0.00	13.8	86.1	0.1	-3.72	1.19	0.82	0.75	—	30198	6153	21	0	0	0	0	logfile

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