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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7RFP | 24444 | 2023-04-20 | 2021-07-14 | 4.4 | 4.57 | — | 4.3 | 0.014 | 2.06 | 8.0 | 0.12 | 7.12 | 0.01 | 1.581 | 3.60 | 8.00 | 9.5 | 87.5 | 3.0 | -1.46 | 0.68 | 0.61 | — | 4.3 | 0.004 | 0.92 | 0.0 | 0.04 | 7.02 | 0.00 | 2.177 | 9.44 | 0.00 | 14.9 | 84.6 | 0.5 | -3.98 | 1.49 | 0.80 | 0.75 | — | 5532 | 1114 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BW7 | 30229 | 2023-04-21 | 2020-04-13 | 4.1 | 4.55 | 4.28 | 4.4 | 0.008 | 1.06 | 0.0 | 0.06 | 16.20 | 0.01 | 2.050 | 40.13 | 0.00 | 23.4 | 76.6 | 0.0 | -5.62 | 0.73 | 0.67 | — | 4.4 | 0.003 | 0.79 | 0.0 | 0.05 | 15.12 | 0.00 | 2.151 | 18.52 | 0.00 | 13.1 | 86.9 | 0.0 | -3.97 | 0.75 | 0.70 | 0.62 | — | 8824 | 1091 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZQA | 11357 | 2023-04-26 | 2020-07-09 | 4.4 | 4.48 | — | 4.4 | 0.006 | 1.11 | 1.0 | 0.06 | 14.62 | 0.01 | 1.928 | 5.28 | 0.00 | 9.3 | 90.4 | 0.3 | -3.27 | 0.77 | 0.74 | — | 4.4 | 0.011 | 1.41 | 0.0 | 0.06 | 16.91 | 0.01 | 1.638 | 24.83 | 0.00 | 20.3 | 79.5 | 0.2 | -3.96 | 1.34 | 0.76 | 0.75 | — | 125991 | 19047 | 63 | 1485 | 5 | 0 | 0 | logfile |
✔ | 6NYG | 0543 | 2023-04-26 | 2019-02-11 | 3.9 | 4.55 | — | 3.9 | 0.005 | 0.97 | 0.0 | 0.06 | 10.45 | 0.00 | 2.242 | 9.18 | 0.16 | 14.1 | 85.9 | 0.0 | -4.66 | 0.82 | 0.64 | 0.83 | 3.9 | 0.003 | 0.73 | 0.0 | 0.05 | 13.61 | 0.00 | 2.093 | 18.96 | 0.18 | 11.3 | 88.7 | 0.0 | -3.94 | 1.29 | 0.83 | 0.68 | 0.96 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SoF | 10273 | 2023-04-29 | 2019-08-29 | 4.3 | 4.23 | 4.20 | 4.1 | 0.006 | 0.93 | 0.0 | 0.05 | 14.59 | 0.01 | 2.017 | 10.51 | 0.62 | 17.7 | 82.3 | 0.0 | -5.47 | 0.82 | 0.72 | — | 4.1 | 0.003 | 0.67 | 0.0 | 0.04 | 13.36 | 0.00 | 1.934 | 15.84 | 0.00 | 15.3 | 84.7 | 0.0 | -3.90 | 1.45 | 0.82 | 0.72 | — | 30333 | 1966 | 12 | 0 | 0 | 0 | 14564 | logfile |
✔ | 5YYS | 6859 | 2023-04-26 | 2017-12-11 | 4.2 | 4.57 | — | 4.1 | 0.016 | 2.27 | 0.0 | 0.10 | 15.30 | 0.01 | 2.201 | 22.76 | 2.34 | 27.3 | 70.1 | 2.6 | -5.98 | 0.85 | 0.71 | — | 4.1 | 0.004 | 1.19 | 0.0 | 0.06 | 12.63 | 0.01 | 2.045 | 33.33 | 0.00 | 24.1 | 75.3 | 0.5 | -3.90 | 1.68 | 0.86 | 0.72 | — | 24044 | 3244 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YW7 | 10960 | 2023-04-20 | 2020-04-29 | 4.5 | 5.21 | — | 4.7 | 0.021 | 3.50 | 0.0 | 0.09 | 6.70 | 0.01 | 2.034 | 2.17 | 0.00 | 4.5 | 94.7 | 0.9 | -1.45 | 0.57 | 0.32 | — | 4.6 | 0.003 | 1.01 | 0.0 | 0.02 | 5.70 | 0.00 | 2.420 | 14.13 | 0.00 | 13.2 | 86.6 | 0.2 | -3.90 | 6.17 | 0.81 | 0.75 | — | 5426 | 1788 | 9 | 0 | 2 | 0 | 0 | logfile |
✔ | 6UM2 | 20816 | 2023-04-22 | 2019-10-08 | 4.32 | 4.49 | — | 4.3 | 0.013 | 1.78 | 10.0 | 0.09 | 15.37 | 0.01 | 1.505 | 10.33 | 0.41 | 6.7 | 92.9 | 0.4 | -4.93 | 0.73 | 0.67 | — | 4.3 | 0.005 | 0.83 | 0.0 | 0.05 | 13.78 | 0.01 | 2.093 | 16.94 | 0.00 | 14.1 | 85.8 | 0.1 | -3.87 | 1.39 | 0.80 | 0.76 | — | 13094 | 1686 | 3 | 0 | 7 | 0 | 0 | logfile |
✔ | 5XLP | 6731 | 2023-04-21 | 2017-05-11 | 4.2 | 4.23 | — | 4.2 | 0.009 | 1.36 | 0.0 | 0.06 | 14.75 | 0.01 | 2.194 | 12.48 | 0.57 | 18.2 | 81.4 | 0.5 | -5.53 | 0.62 | 0.58 | — | 4.1 | 0.003 | 0.91 | 0.0 | 0.04 | 15.84 | 0.01 | 1.956 | 18.56 | 0.11 | 15.4 | 84.4 | 0.2 | -3.85 | 2.41 | 0.65 | 0.63 | — | 9952 | 1343 | 6 | 24 | 0 | 0 | 0 | logfile |
✔ | 6GJ1 | 0009 | 2023-04-22 | 2018-05-15 | 4.7 | 4.83 | — | 4.4 | 0.010 | 1.51 | 5.0 | 0.07 | 11.65 | 0.01 | 0.341 | 23.90 | 0.72 | 18.3 | 81.3 | 0.4 | -5.15 | 0.83 | 0.71 | — | 4.4 | 0.003 | 0.89 | 0.0 | 0.05 | 12.57 | 0.01 | 2.086 | 22.39 | 0.00 | 16.4 | 83.4 | 0.1 | -3.83 | 1.16 | 0.85 | 0.76 | — | 13013 | 1638 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TEB | 10479 | 2023-04-22 | 2019-11-11 | 4.14 | 4.24 | — | 4.1 | 0.007 | 1.14 | 0.0 | 0.07 | 13.67 | 0.01 | 2.286 | 20.47 | 1.20 | 16.7 | 83.1 | 0.2 | -5.28 | 0.73 | 0.75 | — | 4.1 | 0.004 | 0.97 | 0.0 | 0.05 | 14.11 | 0.01 | 2.089 | 26.69 | 0.56 | 12.3 | 87.7 | 0.0 | -3.83 | 2.19 | 0.75 | 0.79 | — | 12168 | 1584 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Uo5 | 26640 | 2023-04-23 | 2022-04-12 | 3.1 | 3.62 | 3.02 | 3.0 | 0.015 | 2.22 | 0.0 | 0.12 | 27.60 | 0.06 | 2.328 | 2.33 | 1.02 | 6.4 | 92.7 | 0.9 | -2.73 | 0.80 | 0.60 | 3.19 | 3.0 | 0.005 | 0.85 | 0.0 | 0.05 | 26.39 | 0.01 | 1.786 | 36.13 | 0.00 | 13.6 | 85.5 | 0.9 | -3.83 | 1.53 | 0.81 | 0.66 | 1.12 | 13979 | 112 | 2 | 373 | 7 | 0 | 5024 | logfile |
✔ | 7WP1 | 32666 | 2023-04-20 | 2022-01-22 | 3.77 | 3.91 | — | 3.9 | 0.006 | 1.17 | 0.0 | 0.07 | 14.56 | 0.02 | 2.338 | 3.88 | 0.00 | 12.2 | 87.5 | 0.2 | -5.40 | 0.64 | 0.78 | 2.71 | 3.9 | 0.004 | 0.80 | 0.0 | 0.05 | 16.26 | 0.00 | 2.064 | 13.18 | 1.13 | 11.8 | 88.2 | 0.0 | -3.82 | 0.96 | 0.63 | 0.78 | 2.11 | 3305 | 423 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7WoP | 32654 | 2023-04-20 | 2022-01-22 | 3.51 | 2.51 | — | 3.4 | 0.002 | 0.54 | 0.0 | 0.04 | 10.83 | 0.00 | 2.203 | 10.97 | 9.21 | 11.4 | 88.6 | 0.0 | -4.81 | 0.64 | 0.66 | 1.96 | 3.4 | 0.005 | 0.85 | 0.0 | 0.05 | 14.87 | 0.01 | 2.063 | 24.57 | 0.72 | 18.5 | 81.5 | 0.0 | -3.82 | 1.29 | 0.65 | 0.69 | 2.10 | 5107 | 669 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5TCU | 8402 | 2023-04-28 | 2016-09-15 | 3.9 | 4.02 | — | 3.9 | 0.010 | 1.21 | 0.0 | 0.06 | 18.30 | 0.01 | 2.000 | 6.31 | 0.88 | 17.4 | 82.4 | 0.2 | -5.50 | 0.70 | 0.79 | 2.09 | 3.9 | 0.004 | 0.70 | 0.0 | 0.04 | 18.32 | 0.00 | 1.829 | 13.13 | 0.94 | 14.0 | 86.0 | 0.0 | -3.80 | 0.42 | 0.71 | 0.83 | 1.16 | 133876 | 5134 | 56 | 4494 | 130 | 0 | 0 | logfile |
✔ | 6CET | 7465 | 2023-04-23 | 2018-02-12 | 4.4 | 4.41 | — | 4.3 | 0.007 | 1.42 | 0.0 | 0.07 | 13.40 | 0.01 | 2.251 | 8.50 | 0.96 | 19.7 | 80.1 | 0.2 | -5.52 | 0.67 | 0.62 | — | 4.3 | 0.004 | 0.94 | 0.0 | 0.05 | 14.01 | 0.01 | 2.112 | 19.33 | 0.06 | 18.7 | 81.3 | 0.0 | -3.78 | 1.59 | 0.68 | 0.63 | — | 14012 | 1741 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N88 | 24233 | 2023-04-21 | 2021-06-14 | 3.7 | 3.90 | — | 3.9 | 0.008 | 1.04 | 0.0 | 0.05 | 15.40 | 0.01 | 1.680 | 28.91 | 0.81 | 21.4 | 78.3 | 0.2 | -6.39 | 0.74 | 0.73 | 1.71 | 3.9 | 0.004 | 0.84 | 0.0 | 0.05 | 16.61 | 0.01 | 1.920 | 18.60 | 0.81 | 13.5 | 86.5 | 0.0 | -3.78 | 1.20 | 0.73 | 0.71 | 1.51 | 9402 | 1220 | 2 | 0 | 4 | 0 | 0 | logfile |
✔ | 6Y7C | 10713 | 2023-04-29 | 2020-02-28 | 3.8 | 5.42 | 3.84 | 2.8 | 0.015 | 1.44 | 1.0 | 0.06 | 18.67 | 0.02 | 0.193 | 10.34 | 1.00 | 14.3 | 85.4 | 0.3 | -5.44 | 0.89 | 0.71 | 0.41 | 2.6 | 0.013 | 0.93 | 0.0 | 0.04 | 18.90 | 0.01 | 1.977 | 36.16 | 0.35 | 15.8 | 84.1 | 0.1 | -3.77 | 2.58 | 0.92 | 0.79 | 0.35 | 79690 | 5381 | 34 | 1735 | 0 | 0 | 0 | logfile |
✔ | 6SJ6 | 10212 | 2023-04-28 | 2019-08-12 | 3.23 | 3.28 | — | 3.2 | 0.010 | 1.05 | 0.0 | 0.06 | 17.17 | 0.01 | 1.886 | 4.33 | 0.14 | 17.7 | 82.2 | 0.2 | -6.09 | 0.78 | 0.78 | 3.43 | 3.2 | 0.005 | 0.78 | 0.0 | 0.04 | 17.22 | 0.01 | 1.839 | 8.44 | 0.51 | 12.8 | 87.2 | 0.0 | -3.73 | 2.00 | 0.80 | 0.80 | 2.36 | 78296 | 2611 | 27 | 2697 | 59 | 0 | 0 | logfile |
✔ | 6VE2 | 21152 | 2023-04-29 | 2019-12-28 | 4.3 | 4.80 | 4.34 | 4.2 | 0.006 | 1.23 | 0.0 | 0.07 | 5.37 | 0.01 | 2.173 | 16.97 | 0.00 | 4.7 | 94.9 | 0.5 | -0.93 | 0.83 | 0.70 | — | 4.2 | 0.004 | 0.94 | 0.0 | 0.05 | 7.57 | 0.00 | 2.114 | 14.88 | 0.00 | 13.8 | 86.1 | 0.1 | -3.72 | 1.19 | 0.82 | 0.75 | — | 30198 | 6153 | 21 | 0 | 0 | 0 | 0 | logfile |