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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5ANC | 3147 | 2023-07-19 | 2015-09-06 | 4.2 | 4.23 | — | 4.2 | 0.008 | 1.35 | 7.0 | 0.10 | 19.00 | 0.01 | 1.236 | 6.62 | 4.21 | 13.6 | 82.7 | 3.6 | -4.33 | 0.41 | 0.74 | — | 4.2 | 0.005 | 0.90 | 0.0 | 0.05 | 17.64 | 0.01 | 2.064 | 23.42 | 0.00 | 15.3 | 83.7 | 1.0 | -4.04 | 1.59 | 0.39 | 0.70 | — | 46807 | 2801 | 11 | 1162 | 0 | 0 | 0 | logfile |
✔ | 6M1D | 30041 | 2023-07-10 | 2020-02-25 | 4.5 | 6.53 | — | 4.6 | 0.005 | 1.20 | 0.0 | 0.06 | 18.16 | 0.01 | 2.043 | 20.67 | 9.51 | 9.3 | 89.8 | 0.9 | -5.09 | 0.69 | 0.76 | — | 4.6 | 0.005 | 1.04 | 0.0 | 0.05 | 14.90 | 0.01 | 0.441 | 31.95 | 0.00 | 11.3 | 88.3 | 0.4 | -4.03 | 0.67 | 0.68 | 0.70 | — | 21776 | 2706 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5XLo | 6729 | 2023-07-07 | 2017-05-11 | 3.8 | 3.91 | — | 3.9 | 0.009 | 1.37 | 0.0 | 0.06 | 14.03 | 0.01 | 2.050 | 13.55 | 0.29 | 17.3 | 81.9 | 0.8 | -6.02 | 0.58 | 0.64 | 0.55 | 3.9 | 0.004 | 0.89 | 0.0 | 0.04 | 17.39 | 0.01 | 2.066 | 20.24 | 0.88 | 15.6 | 84.1 | 0.3 | -4.03 | 1.62 | 0.62 | 0.67 | 0.65 | 15413 | 2073 | 9 | 38 | 0 | 0 | 0 | logfile |
✔ | 6EZo | 4162 | 2023-07-09 | 2017-11-16 | 4.1 | 4.20 | 4.05 | 4.2 | 0.008 | 1.36 | 4.0 | 0.09 | 10.29 | 0.01 | 1.569 | 8.78 | 3.41 | 18.5 | 80.8 | 0.8 | -5.42 | 0.78 | 0.79 | — | 4.1 | 0.008 | 0.97 | 0.0 | 0.05 | 10.23 | 0.01 | 1.979 | 9.01 | 0.00 | 23.2 | 76.5 | 0.3 | -4.02 | 0.46 | 0.78 | 0.78 | — | 18758 | 3367 | 11 | 0 | 1 | 0 | 0 | logfile |
✔ | 7TD6 | 25824 | 2023-07-03 | 2021-12-30 | 3.0 | 3.41 | 3.09 | 3.4 | 0.002 | 0.57 | 0.0 | 0.05 | 16.47 | 0.00 | 2.449 | 7.94 | 0.00 | 0.0 | 100.0 | 0.0 | -3.11 | 0.42 | 0.76 | 2.95 | 3.4 | 0.005 | 0.89 | 0.0 | 0.05 | 18.65 | 0.00 | 2.234 | 13.38 | 3.53 | 9.9 | 90.1 | 0.0 | -4.01 | 1.10 | 0.43 | 0.78 | 3.81 | 5575 | 690 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7X0T | 32924 | 2023-07-05 | 2022-02-22 | 3.3 | 3.58 | — | 3.6 | 0.010 | 1.31 | 3.0 | 0.09 | 15.37 | 0.01 | 2.217 | 7.12 | 1.87 | 9.9 | 89.8 | 0.2 | -5.80 | 0.64 | 0.81 | 2.49 | 3.6 | 0.003 | 0.68 | 0.0 | 0.04 | 16.37 | 0.00 | 2.281 | 7.51 | 0.37 | 7.6 | 92.4 | 0.0 | -3.99 | 0.95 | 0.62 | 0.83 | 1.90 | 10189 | 1266 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7o7S | 12755 | 2023-07-18 | 2021-04-13 | 4.3 | 4.69 | — | 4.4 | 0.009 | 1.28 | 7.0 | 0.07 | 16.80 | 0.02 | 1.857 | 21.65 | 1.09 | 20.1 | 79.2 | 0.7 | -5.96 | 0.75 | 0.58 | — | 4.4 | 0.004 | 0.92 | 0.0 | 0.05 | 14.96 | 0.01 | 2.066 | 26.19 | 0.00 | 13.7 | 86.2 | 0.1 | -3.99 | 2.51 | 0.76 | 0.60 | — | 41466 | 5236 | 17 | 0 | 44 | 0 | 0 | logfile |
✔ | 7RFP | 24444 | 2023-07-03 | 2021-07-14 | 4.4 | 4.57 | — | 4.3 | 0.014 | 2.06 | 8.0 | 0.12 | 7.12 | 0.01 | 1.581 | 3.60 | 8.00 | 9.5 | 87.5 | 3.0 | -1.46 | 0.68 | 0.61 | — | 4.3 | 0.004 | 0.92 | 0.0 | 0.04 | 7.02 | 0.00 | 2.177 | 9.44 | 0.00 | 14.9 | 84.6 | 0.5 | -3.98 | 1.49 | 0.80 | 0.75 | — | 5532 | 1114 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BW7 | 30229 | 2023-07-04 | 2020-04-13 | 4.1 | 4.55 | 4.28 | 4.4 | 0.008 | 1.06 | 0.0 | 0.06 | 16.20 | 0.01 | 2.050 | 40.13 | 0.00 | 23.4 | 76.6 | 0.0 | -5.62 | 0.73 | 0.67 | — | 4.4 | 0.003 | 0.79 | 0.0 | 0.05 | 15.12 | 0.00 | 2.151 | 18.52 | 0.00 | 13.1 | 86.9 | 0.0 | -3.97 | 0.75 | 0.70 | 0.62 | — | 8824 | 1091 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZQA | 11357 | 2023-07-10 | 2020-07-09 | 4.4 | 4.48 | — | 4.4 | 0.006 | 1.11 | 1.0 | 0.06 | 14.62 | 0.01 | 1.928 | 5.28 | 0.00 | 9.3 | 90.4 | 0.3 | -3.27 | 0.77 | 0.74 | — | 4.4 | 0.011 | 1.41 | 0.0 | 0.06 | 16.91 | 0.01 | 1.638 | 24.83 | 0.00 | 20.3 | 79.5 | 0.2 | -3.96 | 1.34 | 0.76 | 0.75 | — | 125991 | 19047 | 63 | 1485 | 5 | 0 | 0 | logfile |
✔ | 6NYG | 0543 | 2023-07-10 | 2019-02-11 | 3.9 | 4.55 | — | 3.9 | 0.005 | 0.97 | 0.0 | 0.06 | 10.45 | 0.00 | 2.242 | 9.18 | 0.16 | 14.1 | 85.9 | 0.0 | -4.66 | 0.82 | 0.64 | 0.83 | 3.9 | 0.003 | 0.73 | 0.0 | 0.05 | 13.61 | 0.00 | 2.093 | 18.96 | 0.18 | 11.3 | 88.7 | 0.0 | -3.94 | 1.29 | 0.83 | 0.68 | 0.96 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YW7 | 10960 | 2023-07-03 | 2020-04-29 | 4.5 | 5.21 | — | 4.7 | 0.021 | 3.50 | 0.0 | 0.09 | 6.70 | 0.01 | 2.034 | 2.17 | 0.00 | 4.5 | 94.7 | 0.9 | -1.45 | 0.57 | 0.32 | — | 4.6 | 0.003 | 1.01 | 0.0 | 0.02 | 5.70 | 0.00 | 2.420 | 14.13 | 0.00 | 13.2 | 86.6 | 0.2 | -3.90 | 6.17 | 0.81 | 0.75 | — | 5426 | 1788 | 9 | 0 | 2 | 0 | 0 | logfile |
✔ | 6SoF | 10273 | 2023-07-14 | 2019-08-29 | 4.3 | 4.23 | 4.20 | 4.1 | 0.006 | 0.93 | 0.0 | 0.05 | 14.59 | 0.01 | 2.017 | 10.51 | 0.62 | 17.7 | 82.3 | 0.0 | -5.47 | 0.82 | 0.72 | — | 4.1 | 0.003 | 0.67 | 0.0 | 0.04 | 13.36 | 0.00 | 1.934 | 15.84 | 0.00 | 15.3 | 84.7 | 0.0 | -3.90 | 1.45 | 0.82 | 0.72 | — | 30333 | 1966 | 12 | 0 | 0 | 0 | 14564 | logfile |
✔ | 5YYS | 6859 | 2023-07-11 | 2017-12-11 | 4.2 | 4.57 | — | 4.1 | 0.016 | 2.27 | 0.0 | 0.10 | 15.30 | 0.01 | 2.201 | 22.76 | 2.34 | 27.3 | 70.1 | 2.6 | -5.98 | 0.85 | 0.71 | — | 4.1 | 0.004 | 1.19 | 0.0 | 0.06 | 12.63 | 0.01 | 2.045 | 33.33 | 0.00 | 24.1 | 75.3 | 0.5 | -3.90 | 1.68 | 0.86 | 0.72 | — | 24044 | 3244 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UM2 | 20816 | 2023-07-06 | 2019-10-08 | 4.32 | 4.49 | — | 4.3 | 0.013 | 1.78 | 10.0 | 0.09 | 15.37 | 0.01 | 1.505 | 10.33 | 0.41 | 6.7 | 92.9 | 0.4 | -4.93 | 0.73 | 0.67 | — | 4.3 | 0.005 | 0.83 | 0.0 | 0.05 | 13.78 | 0.01 | 2.093 | 16.94 | 0.00 | 14.1 | 85.8 | 0.1 | -3.87 | 1.39 | 0.80 | 0.76 | — | 13094 | 1686 | 3 | 0 | 7 | 0 | 0 | logfile |
✔ | 5N6W | 3595 | 2023-07-18 | 2017-02-16 | 4.2 | 4.31 | — | 4.2 | 0.001 | 0.36 | 0.0 | 0.04 | 4.92 | 0.00 | 2.309 | 3.73 | 0.00 | 17.7 | 79.7 | 2.6 | -5.61 | 0.44 | 0.27 | — | 4.2 | 0.003 | 0.69 | 0.0 | 0.04 | 11.38 | 0.01 | 1.946 | 14.52 | 0.13 | 11.9 | 87.4 | 0.7 | -3.87 | 1.92 | 0.71 | 0.71 | — | 40752 | 2512 | 16 | 0 | 0 | 0 | 20032 | logfile |
✔ | 8GH8 | 40036 | 2023-07-04 | 2023-03-09 | 4.3 | 4.08 | 3.85 | 4.0 | 0.004 | 0.79 | 0.0 | 0.05 | 26.42 | 0.01 | 2.219 | 10.05 | 0.23 | 12.7 | 86.8 | 0.5 | -3.65 | 0.48 | 0.44 | — | 4.0 | 0.003 | 0.70 | 0.0 | 0.04 | 26.31 | 0.01 | 2.252 | 9.43 | 0.00 | 11.4 | 88.4 | 0.2 | -3.86 | 1.07 | 0.50 | 0.47 | — | 6991 | 559 | 8 | 136 | 0 | 0 | 0 | logfile |
✔ | 6EU1 | 3956 | 2023-07-18 | 2017-10-27 | 3.4 | 3.40 | — | 6.6 | 0.005 | 1.14 | 0.0 | 0.06 | 12.93 | 0.01 | 1.732 | 6.52 | 0.50 | 16.1 | 83.5 | 0.4 | -5.70 | 0.20 | 0.01 | 0.29 | 3.4 | 0.004 | 0.95 | 0.0 | 0.05 | 16.86 | 0.01 | 2.023 | 16.43 | 0.59 | 16.6 | 83.1 | 0.3 | -3.85 | 1.95 | 0.68 | 0.68 | 1.02 | 40547 | 5012 | 24 | 43 | 7 | 0 | 0 | logfile |
✔ | 5XLP | 6731 | 2023-07-05 | 2017-05-11 | 4.2 | 4.23 | — | 4.2 | 0.009 | 1.36 | 0.0 | 0.06 | 14.75 | 0.01 | 2.194 | 12.48 | 0.57 | 18.2 | 81.4 | 0.5 | -5.53 | 0.62 | 0.58 | — | 4.1 | 0.003 | 0.91 | 0.0 | 0.04 | 15.84 | 0.01 | 1.956 | 18.56 | 0.11 | 15.4 | 84.4 | 0.2 | -3.85 | 2.41 | 0.65 | 0.63 | — | 9952 | 1343 | 6 | 24 | 0 | 0 | 0 | logfile |
✔ | 6W6K | 21558 | 2023-07-19 | 2020-03-17 | 3.6 | 3.84 | — | 3.7 | 0.002 | 0.47 | 0.0 | 0.03 | 14.66 | 0.00 | 2.113 | 10.37 | 0.00 | 6.9 | 93.1 | 0.0 | -4.28 | 0.70 | 0.59 | 0.52 | 3.7 | 0.007 | 1.03 | 0.0 | 0.05 | 18.53 | 0.01 | 1.969 | 31.93 | 1.04 | 16.9 | 83.0 | 0.1 | -3.84 | 1.46 | 0.76 | 0.69 | 0.71 | 46934 | 1873 | 19 | 1534 | 1 | 0 | 0 | logfile |