Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NYL	0545	2021-08-10	2019-02-11	3.7	4.50	—	4.1	0.008	1.14	0.0	0.06	11.10	0.01	2.233	10.29	0.97	16.1	83.9	0.0	-5.60	0.87	0.74	2.26	4.1	0.006	0.85	0.0	0.05	13.00	0.00	2.126	27.78	0.31	21.7	78.3	0.0	-4.81	0.57	0.87	0.74	1.93	68664	9000	12	0	0	0	0	logfile
✔	6U5H	20646	2021-08-07	2019-08-27	4.0	3.67	—	3.7	0.005	1.07	0.0	0.06	8.74	0.01	2.234	9.36	0.39	13.6	86.4	0.0	-5.23	0.41	0.68	—	3.7	0.018	1.42	2.0	0.05	16.08	0.01	2.064	20.91	1.16	14.9	85.1	0.0	-4.80	1.45	0.42	0.71	—	7326	954	3	0	0	0	0	logfile
✔	6S13	10079	2021-08-22	2019-06-18	3.58	3.67	—	5.8	0.023	1.27	2.0	0.06	22.26	0.01	1.596	18.72	21.29	20.5	79.4	0.1	-5.98	0.56	0.28	0.14	3.6	0.014	1.01	3.0	0.05	22.10	0.01	1.314	36.55	1.06	19.7	80.2	0.0	-4.71	2.60	0.67	0.58	0.81	233957	5608	52	4559	0	0	93218	logfile
✔	6CU7	7618	2021-08-07	2018-03-23	3.5	3.63	—	4.3	0.007	0.99	0.0	0.07	9.61	0.00	2.346	4.58	2.38	15.5	84.5	0.0	-4.74	0.38	0.72	2.52	4.4	0.003	0.67	0.0	0.05	14.26	0.00	2.181	15.38	0.48	14.5	85.5	0.0	-4.70	2.56	0.38	0.72	1.43	4140	600	10	0	0	0	0	logfile
✔	6EK5	3521	2021-08-08	2017-09-25	4.2	4.30	4.14	4.3	0.004	1.21	0.0	0.06	10.40	0.01	2.104	10.95	0.61	19.3	80.6	0.1	-5.33	0.65	0.57	—	4.2	0.009	1.21	7.0	0.06	13.84	0.01	1.413	41.66	0.09	21.2	78.7	0.1	-4.67	2.19	0.74	0.73	—	165959	20300	110	0	0	0	0	logfile
✔	5iPK	8100	2021-08-22	2016-03-09	3.7	3.79	—	3.7	0.011	1.35	0.0	0.06	11.53	0.01	2.067	31.05	0.45	21.6	75.8	2.6	-4.98	0.77	0.76	2.94	3.7	0.006	1.14	0.0	0.05	16.41	0.01	1.936	25.40	0.99	22.8	75.0	2.2	-4.66	0.82	0.77	0.84	2.62	240540	30000	60	0	0	0	0	logfile
✔	5ZLU	6934	2021-08-16	2018-03-29	3.6	3.66	—	3.6	0.008	1.26	2.0	0.07	18.68	0.01	0.401	13.54	2.52	18.9	79.1	1.9	-5.90	0.78	0.77	1.74	3.6	0.006	0.93	2.0	0.05	18.64	0.01	1.790	13.01	0.91	19.7	79.6	0.8	-4.65	0.56	0.78	0.79	0.95	150313	6529	60	4596	4	0	0	logfile
✔	3JCD	6549	2021-08-15	2015-12-01	3.7	5.07	—	19.0	0.006	0.84	0.0	0.04	14.69	0.00	1.289	14.54	0.02	9.6	85.8	4.5	-2.43	0.34	0.04	0.30	3.4	0.012	1.73	4.0	0.08	22.58	0.01	1.060	92.69	0.27	19.3	79.2	1.5	-4.64	3.41	0.76	0.52	0.22	147815	5982	57	4715	0	0	0	logfile
✔	6FLT	4276	2021-08-07	2018-01-28	3.42	3.32	—	3.5	0.014	1.15	0.0	0.06	8.31	0.00	2.330	9.03	0.00	14.3	85.7	0.0	-5.36	0.44	0.74	2.91	3.5	0.004	0.62	0.0	0.05	10.15	0.00	2.181	9.65	0.25	19.6	80.4	0.0	-4.60	2.05	0.40	0.78	4.54	8060	580	10	0	0	0	4100	logfile
✔	6UUR	20900	2021-08-07	2019-10-31	3.5	3.51	—	3.6	0.004	0.76	0.0	0.05	15.65	0.00	2.644	8.15	0.00	5.3	94.7	0.0	-4.46	0.56	0.78	3.10	3.6	0.007	0.95	0.0	0.05	16.09	0.00	2.169	14.31	1.20	8.7	91.3	0.0	-4.58	2.24	0.52	0.80	3.17	2770	400	10	0	0	0	0	logfile
✔	6DSo	8910	2021-08-07	2018-06-14	3.0	3.30	2.98	3.4	0.009	0.94	0.0	0.06	7.35	0.00	2.431	1.53	0.00	3.2	96.8	0.0	-4.46	0.49	0.81	6.10	3.3	0.010	0.85	0.0	0.05	15.85	0.00	2.179	10.78	1.04	10.9	89.1	0.0	-4.57	1.56	0.51	0.83	5.18	6588	828	12	0	0	0	0	logfile
✔	5N6W	3595	2021-08-11	2017-02-16	4.2	4.31	—	4.2	0.001	0.36	0.0	0.04	4.92	0.00	2.309	3.73	0.00	17.7	79.7	2.6	-5.61	0.44	0.28	—	4.2	0.028	2.04	4.0	0.05	11.63	0.01	1.888	29.56	0.17	13.8	85.3	0.8	-4.48	1.56	0.69	0.66	—	40752	2512	16	0	0	0	20032	logfile
✔	6o9J	0661	2021-08-13	2019-03-14	3.9	3.92	—	3.9	0.006	1.25	25.0	0.10	17.39	0.01	0.154	54.15	23.17	26.6	58.7	14.7	-7.10	0.74	0.66	0.16	3.9	0.011	1.05	8.0	0.04	16.97	0.01	1.337	28.96	0.58	22.8	74.6	2.6	-4.48	2.10	0.79	0.76	0.23	142682	5731	53	4564	0	0	0	logfile
✔	6GQ1	0047	2021-08-14	2018-06-07	4.4	4.37	—	4.3	0.007	1.13	0.0	0.06	17.14	0.01	2.151	8.67	1.11	16.1	83.4	0.5	-5.54	0.84	0.78	—	4.3	0.005	0.83	0.0	0.04	17.10	0.01	1.979	21.23	0.07	16.5	83.2	0.3	-4.47	1.18	0.85	0.80	—	210540	12168	92	5362	10	0	0	logfile
✔	6VE2	21152	2021-08-10	2019-12-28	4.3	4.80	4.34	4.2	0.006	1.23	0.0	0.07	5.37	0.01	2.173	16.40	0.00	4.7	94.9	0.5	-0.93	0.83	0.70	—	4.2	0.009	1.34	0.0	0.05	10.64	0.01	2.046	35.59	0.00	21.0	78.2	0.8	-4.47	1.46	0.83	0.79	—	30198	6153	21	0	0	0	0	logfile
✔	6Z7Q	11112	2021-08-08	2020-06-01	3.8	4.10	3.58	4.0	0.006	0.77	0.0	0.05	14.47	0.00	2.176	20.74	0.00	28.6	70.7	0.7	-6.49	0.73	0.82	1.75	4.0	0.010	1.21	1.0	0.05	17.12	0.01	2.021	21.89	0.64	16.8	83.1	0.0	-4.47	1.21	0.76	0.83	1.14	16665	2080	5	0	0	0	0	logfile
✔	6NYM	0546	2021-08-10	2019-02-11	3.6	4.42	—	4.1	0.005	0.94	0.0	0.06	10.43	0.00	2.260	8.12	0.32	12.6	87.4	0.0	-5.10	0.87	0.78	2.54	4.2	0.007	0.85	1.0	0.05	13.06	0.00	2.152	19.90	0.49	21.0	79.0	0.0	-4.47	1.22	0.88	0.80	2.19	68664	9000	12	0	0	0	0	logfile
✔	7C1D	30269	2021-08-07	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	17.40	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.004	0.69	0.0	0.05	14.89	0.00	2.232	21.81	0.52	20.1	79.9	0.0	-4.46	2.84	0.42	0.76	2.27	2034	306	6	0	0	0	0	logfile
✔	6WQK	21871	2021-08-07	2020-04-29	3.1	3.26	—	3.3	0.003	0.70	0.0	0.04	14.47	0.00	2.272	4.54	0.00	1.8	98.2	0.0	-5.40	0.48	0.84	4.99	3.3	0.005	0.74	0.0	0.05	13.65	0.00	2.234	5.07	0.54	4.7	95.3	0.0	-4.44	0.45	0.48	0.86	5.46	2070	285	5	0	0	0	0	logfile
✔	6GQB	0048	2021-08-15	2018-06-07	3.9	3.98	—	3.9	0.008	1.19	1.0	0.06	17.18	0.01	2.146	8.35	1.22	16.6	83.0	0.5	-5.75	0.81	0.75	1.46	3.9	0.008	0.94	5.0	0.04	17.58	0.01	1.518	20.95	0.25	16.4	83.3	0.3	-4.43	0.47	0.83	0.79	1.07	212143	12373	93	5362	10	0	0	logfile

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