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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7YG9 | 33812 | 2024-03-11 | 2022-07-11 | 2.68 | 3.47 | 2.76 | 2.8 | 0.005 | 0.51 | 0.0 | 0.03 | 24.67 | 0.00 | 1.804 | 13.88 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.86 | 0.81 | — | 2.8 | 0.006 | 0.62 | 0.0 | 0.04 | 24.38 | 0.00 | 1.873 | 17.58 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.39 | 0.92 | 0.92 | — | 8630 | 0 | 3 | 404 | 8 | 0 | 0 | logfile |
✔ | 7R6L | 24281 | 2024-03-11 | 2021-06-22 | 2.85 | 3.04 | — | 3.0 | 0.008 | 0.89 | 0.0 | 0.05 | 25.02 | 0.01 | 1.985 | 4.24 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.67 | 0.86 | — | 3.0 | 0.006 | 0.74 | 0.0 | 0.04 | 24.59 | 0.01 | 1.877 | 7.46 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.08 | 0.62 | 0.86 | — | 7857 | 0 | 3 | 366 | 20 | 0 | 0 | logfile |
✔ | 7PBW | 13307 | 2024-03-14 | 2021-08-02 | 2.1 | 1.98 | — | 2.1 | 0.009 | 0.99 | 0.0 | 0.05 | 12.27 | 0.01 | 2.243 | 2.93 | 0.00 | 0.0 | 100.0 | 0.0 | 3.14 | 0.78 | 0.90 | 7.90 | 2.1 | 0.004 | 0.76 | 0.0 | 0.04 | 14.40 | 0.01 | 2.149 | 7.89 | 0.46 | 0.0 | 100.0 | 0.0 | 4.47 | 0.28 | 0.77 | 0.90 | 7.39 | 9500 | 873 | 54 | 0 | 81 | 230 | 0 | logfile |
✔ | 7EZ0 | 31385 | 2024-03-11 | 2021-06-01 | 3.14 | 3.26 | — | 3.2 | 0.003 | 0.56 | 0.0 | 0.03 | 23.64 | 0.00 | 1.804 | 2.25 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.74 | 0.79 | — | 3.2 | 0.006 | 0.70 | 0.0 | 0.04 | 23.85 | 0.00 | 1.860 | 8.26 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.55 | 0.77 | 0.86 | — | 8306 | 0 | 1 | 387 | 27 | 0 | 0 | logfile |
✔ | 8Ci8 | 16671 | 2024-03-10 | 2023-02-09 | 2.67 | 2.61 | 2.27 | 2.7 | 0.009 | 1.46 | 0.0 | 0.08 | 13.63 | 0.01 | 2.521 | 0.00 | 0.00 | 0.0 | 100.0 | 0.0 | -4.96 | 0.64 | 0.83 | 3.28 | 2.7 | 0.004 | 0.61 | 0.0 | 0.04 | 16.52 | 0.00 | 2.091 | 9.36 | 8.00 | 1.4 | 98.6 | 0.0 | -3.06 | 1.20 | 0.65 | 0.86 | 5.00 | 3430 | 485 | 25 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PTL | 13630 | 2024-03-19 | 2021-09-27 | 4.9 | 10.06 | 4.95 | — | 0.005 | 1.01 | 0.0 | 0.06 | 23.55 | 0.01 | 2.401 | 0.61 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.88 | 0.79 | — | — | 0.007 | 0.87 | 0.0 | 0.04 | 27.76 | 0.01 | 1.723 | 81.11 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.51 | 0.92 | 0.92 | — | 23080 | 0 | 1 | 720 | 0 | 0 | 7743 | logfile |
✔ | 7R6M | 24282 | 2024-03-11 | 2021-06-22 | 3.68 | 3.27 | — | 3.4 | 0.006 | 0.94 | 0.0 | 0.04 | 25.58 | 0.01 | 2.005 | 4.72 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.53 | 0.72 | — | 3.4 | 0.007 | 0.85 | 0.0 | 0.04 | 25.53 | 0.01 | 1.757 | 17.07 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.18 | 0.55 | 0.73 | — | 7755 | 0 | 3 | 362 | 13 | 0 | 0 | logfile |
✔ | 7YCH | 33739 | 2024-03-11 | 2022-07-01 | 3.09 | 4.46 | 3.30 | 3.5 | 0.002 | 0.48 | 0.0 | 0.02 | 24.19 | 0.00 | 1.420 | 15.91 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.92 | 0.84 | — | 3.6 | 0.007 | 0.67 | 0.0 | 0.04 | 24.32 | 0.00 | 1.812 | 30.74 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.91 | 0.94 | 0.88 | — | 8661 | 0 | 2 | 404 | 4 | 0 | 0 | logfile |
✔ | 8oi0 | 16886 | 2024-03-10 | 2023-03-21 | 2.9 | 2.98 | 2.82 | 3.0 | 0.015 | 1.31 | 0.0 | 1.26 | 30.75 | 0.00 | 2.037 | 4.24 | 0.00 | 0.0 | 100.0 | 0.0 | -3.25 | 0.47 | 0.85 | 5.73 | 2.9 | 0.004 | 0.55 | 0.0 | 0.06 | 20.05 | 0.00 | 2.218 | 1.35 | 0.76 | 0.0 | 100.0 | 0.0 | -3.09 | 1.04 | 0.46 | 0.85 | 4.21 | 2784 | 312 | 24 | 0 | 24 | 0 | 0 | logfile |
✔ | 7RZV | 24779 | 2024-03-10 | 2021-08-27 | 2.11 | 2.24 | — | 2.0 | 0.005 | 0.35 | 0.0 | 0.03 | 14.68 | 0.00 | 2.348 | 5.44 | 0.00 | 0.0 | 100.0 | 0.0 | 3.06 | 0.79 | 0.80 | 2.21 | 2.0 | 0.004 | 0.36 | 0.0 | 0.03 | 16.04 | 0.00 | 2.237 | 5.05 | 1.35 | 0.0 | 100.0 | 0.0 | 5.77 | 0.88 | 0.83 | 0.83 | 1.74 | 2562 | 339 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oT3 | 17167 | 2024-03-10 | 2023-04-20 | 2.73 | 3.21 | 2.60 | 3.2 | 0.014 | 2.33 | 0.0 | 0.13 | 16.88 | 0.01 | 2.559 | 0.00 | 0.00 | 0.0 | 100.0 | 0.0 | -3.27 | 0.52 | 0.76 | 7.19 | 3.2 | 0.004 | 0.82 | 0.0 | 0.05 | 16.37 | 0.00 | 2.121 | 7.45 | 3.57 | 3.8 | 96.2 | 0.0 | -3.57 | 1.86 | 0.42 | 0.79 | 7.38 | 2460 | 336 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8AZ2 | 15730 | 2024-03-10 | 2022-09-05 | 3.4 | 3.30 | 3.43 | 3.7 | 0.003 | 0.45 | 0.0 | 0.04 | 9.02 | 0.00 | 2.412 | 5.63 | 0.00 | 0.0 | 100.0 | 0.0 | -2.98 | 0.52 | 0.85 | 6.33 | 3.6 | 0.005 | 0.60 | 0.0 | 0.05 | 12.22 | 0.00 | 2.214 | 3.17 | 1.25 | 5.2 | 94.8 | 0.0 | -3.60 | 0.47 | 0.48 | 0.86 | 6.08 | 2935 | 395 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 6U5o | 20651 | 2024-03-20 | 2019-08-28 | 3.7 | 3.81 | — | 3.8 | 0.005 | 0.78 | 0.0 | 0.04 | 14.70 | 0.01 | 2.093 | 5.81 | 0.00 | 0.0 | 100.0 | 0.0 | -4.22 | 0.65 | 0.75 | 1.93 | 3.8 | 0.005 | 0.87 | 1.0 | 0.04 | 16.81 | 0.00 | 1.889 | 9.88 | 1.71 | 7.6 | 92.4 | 0.0 | -0.86 | 0.85 | 0.68 | 0.79 | 2.09 | 26316 | 1623 | 5 | 0 | 0 | 0 | 13339 | logfile |
✔ | 6LHV | 0900 | 2024-03-16 | 2019-12-10 | 4.59 | 4.86 | — | 4.4 | 0.010 | 1.38 | 0.0 | 0.05 | 5.37 | 0.00 | 1.654 | 9.63 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.70 | 0.59 | — | 4.4 | 0.010 | 1.38 | 0.0 | 0.05 | 6.64 | 0.00 | 2.051 | 53.25 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.58 | 0.84 | 0.81 | — | 8456 | 0 | 3 | 0 | 1707 | 0 | 0 | logfile |
✔ | 6X5i | 22051 | 2024-03-11 | 2020-05-26 | 4.3 | 4.27 | — | 4.0 | 0.060 | 2.79 | 0.0 | 0.16 | 29.93 | 0.00 | 2.206 | 29.57 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.70 | 0.70 | — | 4.0 | 0.011 | 1.53 | 0.0 | 0.13 | 24.62 | 0.00 | 1.571 | 57.36 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.30 | 0.69 | 0.74 | — | 4480 | 70 | 70 | 0 | 280 | 0 | 0 | logfile |
✔ | 6UET | 20756 | 2024-03-10 | 2019-09-23 | 4.1 | 4.91 | — | 5.1 | 0.010 | 1.61 | 0.0 | 0.07 | 26.22 | 0.02 | 1.977 | 4.88 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.62 | 0.73 | — | 5.0 | 0.007 | 0.95 | 0.0 | 0.05 | 27.75 | 0.01 | 1.730 | 49.85 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.76 | 0.66 | 0.80 | — | 3869 | 0 | 1 | 119 | 1 | 0 | 1291 | logfile |
✔ | 7R6N | 24283 | 2024-03-11 | 2021-06-22 | 4.1 | 3.51 | — | 3.7 | 0.006 | 0.96 | 0.0 | 0.04 | 25.04 | 0.01 | 2.036 | 3.68 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.56 | 0.75 | — | 3.7 | 0.006 | 0.82 | 0.0 | 0.04 | 24.95 | 0.01 | 1.770 | 17.37 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.26 | 0.58 | 0.76 | — | 7588 | 0 | 1 | 354 | 12 | 0 | 0 | logfile |
✔ | 6oG3 | 20051 | 2024-03-10 | 2019-04-01 | 4.1 | 5.37 | — | 6.5 | 0.005 | 1.53 | 0.0 | 0.00 | 0.93 | 0.00 | 2.539 | 0.00 | 0.00 | 0.0 | 99.2 | 0.8 | 0.27 | 0.46 | 0.48 | — | 6.0 | 0.005 | 1.11 | 0.0 | 0.00 | 8.01 | 0.00 | 2.615 | 51.00 | 0.00 | 13.0 | 87.0 | 0.0 | -1.64 | 2.16 | 0.67 | 0.87 | — | 1215 | 396 | 4 | 0 | 9 | 0 | 0 | logfile |
✔ | 8FF3 | 29037 | 2024-03-10 | 2022-12-07 | 3.09 | 2.31 | 2.69 | 3.2 | 0.002 | 0.43 | 0.0 | 0.06 | 8.70 | 0.00 | 2.616 | 1.83 | 0.00 | 0.0 | 100.0 | 0.0 | -2.15 | 0.40 | 0.67 | 4.94 | 3.2 | 0.004 | 0.49 | 0.0 | 0.05 | 11.72 | 0.00 | 2.004 | 5.95 | 0.93 | 1.4 | 98.6 | 0.0 | -2.33 | 0.51 | 0.36 | 0.72 | 4.63 | 2190 | 150 | 6 | 0 | 0 | 0 | 1122 | logfile |
✔ | 7YGB | 33814 | 2024-03-11 | 2022-07-11 | 2.62 | 3.15 | 2.70 | 2.9 | 0.007 | 0.52 | 0.0 | 0.03 | 24.24 | 0.00 | 2.079 | 13.50 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.88 | 0.84 | — | 2.9 | 0.007 | 0.64 | 0.0 | 0.04 | 23.99 | 0.00 | 1.834 | 13.50 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.92 | 0.92 | — | 8738 | 0 | 5 | 407 | 54 | 0 | 0 | logfile |