Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oDS	12846	2021-12-01	2021-04-30	3.1	3.32	—	3.1	0.002	0.40	0.0	0.03	11.15	0.02	2.009	5.01	0.51	1.2	98.8	0.0	0.91	0.78	0.76	2.42	3.1	0.006	0.77	0.0	0.04	14.79	0.01	1.527	11.50	0.28	3.0	97.0	0.0	0.37	1.69	0.79	0.79	2.22	108339	9371	67	1487	132	0	0	logfile
✔	7E33	30975	2021-12-01	2021-02-07	2.9	3.20	—	3.2	0.004	0.45	0.0	0.04	12.31	0.00	1.918	6.52	0.00	1.2	98.8	0.0	2.41	0.63	0.73	2.39	3.2	0.003	0.60	0.0	0.04	15.88	0.00	2.117	10.99	1.39	3.0	97.0	0.0	1.08	1.57	0.64	0.79	2.71	8538	1086	5	0	1	0	0	logfile
✔	6NUS	0521	2021-12-01	2019-02-01	3.5	3.62	3.47	3.6	0.016	1.57	0.0	0.09	9.78	0.01	2.301	0.99	0.14	1.2	98.8	0.0	0.30	0.56	0.68	2.07	3.6	0.003	0.62	0.0	0.04	14.95	0.00	2.168	10.76	0.82	2.7	97.3	0.0	0.57	1.49	0.54	0.72	1.45	6632	827	3	0	2	0	0	logfile
✔	6VQi	21351	2021-12-01	2020-02-05	4.3	4.89	—	4.2	0.005	1.14	0.0	0.05	3.90	0.01	2.327	1.95	0.00	1.3	98.2	0.5	2.16	0.56	0.73	—	3.8	0.002	0.54	0.0	0.03	3.92	0.00	2.243	3.65	0.00	5.4	94.5	0.1	3.11	0.74	0.56	0.76	—	5278	1062	8	0	0	0	0	logfile
✔	7N0C	24103	2021-12-01	2021-05-25	3.4	3.71	—	3.7	0.009	1.00	0.0	0.05	13.78	0.01	2.180	6.79	0.00	1.3	98.7	0.0	-3.80	0.72	0.80	2.48	3.7	0.003	0.64	0.0	0.04	14.71	0.00	1.109	11.83	0.36	5.5	94.5	0.0	-1.49	0.49	0.73	0.81	1.79	6088	644	6	49	7	1	0	logfile
✔	7LXW	23577	2021-12-01	2021-03-05	2.8	3.13	2.86	3.2	0.012	1.20	0.0	0.07	10.03	0.01	2.593	0.61	0.00	1.3	98.7	0.0	0.97	0.78	0.81	5.37	3.2	0.004	0.65	0.0	0.05	15.02	0.01	2.225	10.77	1.52	1.7	98.3	0.0	0.44	1.17	0.73	0.83	5.04	2524	317	5	0	5	0	0	logfile
✔	3J9S	6272	2021-12-01	2015-02-19	2.6	3.83	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.216	24.94	6.86	1.3	98.0	0.8	1.97	0.68	0.76	3.15	3.5	0.003	0.64	0.0	0.04	17.34	0.00	1.152	8.77	1.52	1.9	98.1	0.0	1.29	1.91	0.70	0.89	3.42	9813	1191	3	0	15	315	0	logfile
✔	7oQZ	13035	2021-12-01	2021-06-04	3.27	3.59	3.75	3.8	0.009	0.98	0.0	0.03	13.71	0.00	2.257	3.35	0.51	1.3	98.7	0.0	4.83	0.61	0.78	2.67	3.8	0.004	0.68	0.0	0.04	17.14	0.00	2.171	10.23	0.77	3.2	96.8	0.0	3.30	0.82	0.63	0.81	2.22	7996	948	8	0	16	0	0	logfile
✔	7D7M	30608	2021-12-01	2020-10-05	3.3	2.94	3.16	3.3	0.006	0.77	0.0	0.16	14.40	0.00	2.208	9.93	0.00	1.3	98.7	0.0	0.14	0.64	0.74	2.13	3.3	0.004	0.67	0.0	0.04	15.25	0.01	2.191	8.50	0.29	2.0	98.0	0.0	0.91	0.53	0.61	0.74	1.51	7326	1031	6	0	1	0	0	logfile
✔	7BV2	30210	2021-12-01	2020-04-09	2.5	2.82	—	2.8	0.005	0.74	0.0	0.05	14.51	0.00	1.942	5.48	0.00	1.3	98.7	0.0	0.03	0.77	0.83	4.56	2.8	0.004	0.57	0.0	0.04	15.77	0.00	2.187	5.30	0.90	2.1	97.9	0.0	0.33	0.43	0.71	0.84	4.08	8630	1011	8	25	6	5	0	logfile
✔	6PWC	20505	2021-12-01	2019-07-22	4.9	5.55	—	4.5	0.003	0.67	0.0	0.05	4.68	0.01	2.345	2.19	0.00	1.3	98.7	0.0	-0.09	0.61	0.67	—	4.6	0.003	0.71	0.0	0.04	6.38	0.00	2.135	12.03	0.00	6.0	94.0	0.0	-0.57	2.41	0.61	0.58	—	5879	1055	5	0	0	0	0	logfile
✔	6SLU	10240	2021-12-02	2019-08-20	4.7	4.88	4.61	4.8	0.004	0.64	0.0	0.04	9.23	0.00	1.454	9.87	0.18	1.3	98.7	0.0	-1.03	0.69	0.77	—	4.7	0.004	0.85	0.0	0.05	13.31	0.01	2.104	21.06	0.00	3.5	96.5	0.0	-0.26	1.79	0.73	0.82	—	10336	1320	6	0	0	0	0	logfile
✔	7JVP	22509	2021-12-01	2020-08-22	2.9	3.02	—	3.0	0.005	0.98	0.0	0.07	8.69	0.01	2.208	5.92	0.00	1.3	98.7	0.0	2.55	0.62	0.76	2.94	3.0	0.004	0.61	0.0	0.04	15.73	0.01	2.119	12.36	2.69	2.4	97.6	0.0	0.61	0.84	0.65	0.84	3.01	8486	1041	6	0	12	0	0	logfile
✔	6i5A	4413	2021-12-01	2018-11-13	2.3	2.34	1.50	2.3	0.012	1.84	1.0	0.10	14.16	0.01	2.431	6.70	0.74	1.3	97.4	1.3	-0.89	0.26	0.84	3.95	2.3	0.003	0.54	0.0	0.04	16.64	0.00	2.349	2.93	4.44	2.0	98.0	0.0	2.46	1.23	0.30	0.87	4.22	1206	153	1	0	0	0	0	logfile
✘	6VFi	21173	2021-12-02	2020-01-05	4.54	4.63	4.96	4.5	0.018	1.47	0.0	0.09	10.93	0.01	2.449	0.53	0.00	1.3	98.7	0.0	1.21	0.80	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	58488	7560	48	0	0	0	0	logfile
✘	6RKo	4908	2021-12-01	2019-04-30	2.68	2.73	—	2.7	0.008	0.98	1.0	0.04	17.31	0.00	1.130	8.04	0.42	1.4	98.6	0.0	-4.70	0.73	0.88	4.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7289	875	8	0	9	31	0	logfile
✔	7KDT	22829	2021-12-01	2020-10-09	3.05	3.34	3.19	3.4	0.012	1.74	0.0	0.09	14.56	0.02	2.562	0.12	0.47	1.4	98.6	0.0	-1.64	0.70	0.77	2.95	3.3	0.002	0.51	0.0	0.03	17.10	0.00	2.221	6.08	0.00	1.8	98.2	0.0	3.06	2.82	0.68	0.79	2.35	8064	505	2	0	0	0	4042	logfile
✔	7oDF	12827	2021-12-01	2021-04-29	2.66	3.20	—	3.1	0.003	0.49	0.0	0.04	16.48	0.00	1.952	6.12	0.00	1.4	98.6	0.0	1.47	0.75	0.83	3.58	3.1	0.003	0.52	0.0	0.04	17.77	0.00	2.010	8.11	2.74	2.1	97.9	0.0	1.74	0.89	0.70	0.80	3.35	6847	703	7	78	2	5	0	logfile
✔	6QPi	4614	2021-12-01	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.002	0.44	0.0	0.04	4.28	0.00	2.462	1.49	0.00	2.8	97.2	0.0	2.25	1.20	0.41	0.62	—	2288	462	2	0	0	0	0	logfile
✔	7EW3	31346	2021-12-01	2021-05-24	3.1	3.34	—	3.4	0.004	0.49	0.0	0.04	14.15	0.00	2.274	4.63	0.00	1.4	98.6	0.0	1.36	0.66	0.76	2.23	3.4	0.003	0.55	0.0	0.04	15.66	0.00	2.098	4.68	0.20	1.9	98.1	0.0	1.26	1.36	0.64	0.77	2.46	9072	1149	6	0	5	0	0	logfile

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