Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7U2B	26311	2023-04-20	2022-02-23	4.1	4.26	—	4.2	0.009	0.96	0.0	0.05	14.98	0.00	1.936	7.07	0.15	0.1	99.9	0.0	2.20	0.72	0.71	—	4.2	0.003	0.62	0.0	0.04	15.43	0.00	2.153	10.28	0.00	1.8	98.2	0.0	0.53	1.44	0.78	0.80	—	7316	780	5	53	2	0	0	logfile
✔	6PoS	20418	2023-04-19	2019-07-05	4.12	4.39	—	4.2	0.003	0.68	0.0	0.04	11.58	0.01	2.116	2.48	0.00	0.1	99.9	0.0	-2.43	0.80	0.77	—	4.2	0.002	0.55	0.0	0.04	13.00	0.00	1.937	10.02	0.03	3.3	96.7	0.0	-0.01	1.03	0.82	0.80	—	53503	3425	20	0	13	0	26853	logfile
✔	7UiX	26556	2023-04-28	2022-03-29	3.24	3.26	—	3.3	0.004	0.79	0.0	0.04	14.12	0.00	2.013	2.99	0.02	0.1	99.9	0.0	-0.81	0.62	0.80	2.80	3.3	0.012	0.73	0.0	0.04	16.82	0.01	1.703	9.66	0.32	3.3	96.7	0.0	0.33	0.82	0.60	0.84	2.84	76307	4820	20	0	23	0	38286	logfile
✔	7EEi	31077	2023-04-21	2021-03-18	3.6	3.44	—	3.4	0.006	1.09	0.0	0.06	13.71	0.01	1.975	5.03	0.00	0.1	99.9	0.0	-1.90	0.77	0.77	1.99	3.4	0.003	0.65	0.0	0.04	15.23	0.00	2.159	7.84	0.12	5.2	94.8	0.0	-0.01	1.24	0.80	0.80	2.19	9825	1400	1	0	0	0	0	logfile
✔	6ZVJ	11458	2023-04-22	2020-07-24	3.8	3.00	—	3.1	0.010	1.33	7.0	0.07	17.39	0.01	1.731	5.46	1.39	0.2	99.8	0.0	-4.19	0.59	0.64	1.31	2.9	0.002	0.65	0.0	0.04	17.29	0.00	1.911	12.28	0.29	4.7	95.3	0.0	-0.88	1.68	0.67	0.75	0.98	115020	10127	55	1720	9	0	0	logfile
✘	7LMS	23441	2023-04-20	2021-02-05	3.5	4.13	3.61	4.0	0.019	1.52	0.0	0.09	10.07	0.01	2.432	0.41	0.00	0.2	99.8	0.0	0.57	0.81	0.83	3.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4947	613	4	0	1	0	0	logfile
✔	7M5o	23678	2023-04-22	2021-03-24	3.54	2.81	3.58	3.6	0.003	0.54	0.0	0.04	15.95	0.00	1.978	10.65	1.25	0.2	99.8	0.0	-2.03	0.79	0.75	1.08	3.7	0.003	0.63	0.0	0.04	17.48	0.00	2.011	13.99	1.42	6.0	94.0	0.0	-0.10	1.24	0.80	0.77	1.48	11648	655	3	37	1	0	5635	logfile
✔	6XLA	22237	2023-04-20	2020-06-28	3.1	3.41	—	3.3	0.005	0.65	0.0	0.04	19.84	0.00	2.276	3.37	0.00	0.2	99.8	0.0	-2.59	0.78	0.84	3.37	3.3	0.003	0.55	0.0	0.04	20.59	0.00	2.115	4.72	0.61	2.3	97.7	0.0	-0.34	1.32	0.79	0.86	2.94	5403	536	6	46	2	0	0	logfile
✔	7QHH	13972	2023-04-22	2021-12-12	3.6	3.51	3.48	3.6	0.014	1.83	0.0	0.09	12.10	0.01	2.546	3.81	0.19	0.3	99.6	0.1	-0.83	0.66	0.74	3.73	3.5	0.007	0.68	0.0	0.04	13.45	0.00	2.105	10.60	0.75	1.8	98.2	0.0	1.01	1.31	0.65	0.75	2.77	13626	1982	12	0	14	0	0	logfile
✔	7T2E	25611	2023-04-19	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.49	0.0	0.04	16.21	0.00	2.222	2.35	1.18	0.3	99.7	0.0	0.45	0.13	0.36	0.86	4.79	2390	312	2	0	0	0	0	logfile
✔	7BES	12158	2023-04-21	2020-12-24	2.85	2.95	2.86	2.9	0.013	1.03	0.0	0.05	10.01	0.00	2.236	7.96	0.85	0.3	99.7	0.0	0.37	0.73	0.82	3.32	2.9	0.004	0.58	0.0	0.04	15.51	0.00	2.073	10.07	2.01	0.7	99.3	0.0	0.46	1.16	0.73	0.84	3.14	9446	1234	12	6	4	0	0	logfile
✔	6W1X	21516	2023-04-26	2020-03-04	3.9	4.01	—	3.9	0.011	0.99	0.0	0.08	8.95	0.01	1.879	4.63	0.06	0.3	99.7	0.0	-0.99	0.75	0.72	0.89	3.9	0.005	0.73	0.0	0.04	14.98	0.00	2.077	13.95	0.50	5.6	94.4	0.0	-0.60	1.59	0.81	0.82	1.91	21735	2874	12	60	0	0	0	logfile
✔	6C9i	7436	2023-04-26	2018-01-26	3.09	3.21	—	3.2	0.029	1.48	0.0	0.12	9.22	0.01	2.417	0.81	0.00	0.3	99.6	0.1	2.36	0.79	0.85	4.97	3.2	0.004	0.46	0.0	0.04	15.19	0.00	2.246	5.13	0.16	0.0	100.0	0.0	3.57	2.43	0.72	0.90	3.61	23700	3087	24	0	0	0	0	logfile
✔	7RU6	24698	2023-04-20	2021-08-16	4.4	4.33	3.79	4.2	0.003	0.59	0.0	0.04	15.25	0.00	2.027	10.32	0.00	0.3	99.7	0.0	3.15	0.71	0.67	—	4.2	0.002	0.50	0.0	0.03	13.30	0.00	2.118	7.19	0.34	1.9	98.1	0.0	4.08	0.78	0.74	0.70	—	5426	331	2	0	0	0	2725	logfile
✔	6T90	10406	2023-04-22	2019-10-25	3.05	3.74	—	3.3	0.022	1.52	0.0	0.09	24.61	0.01	2.459	0.40	0.00	0.3	99.7	0.0	1.02	0.84	0.81	4.34	3.3	0.004	0.59	0.0	0.03	26.53	0.00	2.050	6.29	0.40	1.4	98.6	0.0	3.02	2.93	0.86	0.87	2.63	13031	903	19	282	9	0	0	logfile
✔	7UiY	26557	2023-04-28	2022-03-29	3.22	3.19	—	3.2	0.006	0.86	0.0	0.04	14.26	0.00	1.981	3.47	0.00	0.3	99.7	0.0	-0.25	0.60	0.81	3.14	3.2	0.003	0.58	0.0	0.04	16.78	0.00	1.873	9.28	0.15	2.7	97.3	0.0	0.45	0.68	0.61	0.85	2.98	76262	4819	20	0	17	0	38283	logfile
✔	6T93	10408	2023-04-22	2019-10-25	3.49	4.10	—	3.7	0.014	1.15	0.0	0.06	27.23	0.01	2.435	0.74	0.00	0.3	99.7	0.0	0.78	0.87	0.85	2.94	3.7	0.004	0.68	0.0	0.03	28.03	0.00	2.203	11.73	0.95	3.0	97.0	0.0	2.52	2.06	0.87	0.87	1.78	12199	758	10	302	0	0	0	logfile
✔	7UiW	26555	2023-04-28	2022-03-29	3.33	3.27	—	3.3	0.004	0.77	0.0	0.04	13.74	0.00	2.005	2.75	0.02	0.3	99.7	0.0	-0.17	0.59	0.75	2.41	3.3	0.003	0.55	0.0	0.04	16.63	0.00	1.810	9.34	0.47	2.6	97.4	0.0	0.28	0.83	0.61	0.82	2.57	75891	4792	19	0	17	0	38115	logfile
✔	7UiV	26554	2023-04-28	2022-03-29	3.38	3.40	—	3.4	0.004	0.81	0.0	0.05	14.78	0.00	2.004	2.73	0.00	0.3	99.7	0.0	1.05	0.59	0.77	2.52	3.4	0.003	0.59	0.0	0.04	17.24	0.00	1.819	9.49	0.27	2.7	97.3	0.0	0.47	1.24	0.60	0.83	2.47	76152	4805	20	0	18	0	38252	logfile
✔	8ET3	28585	2023-04-20	2022-10-16	3.7	4.31	3.57	3.7	0.003	0.61	0.0	0.04	12.50	0.00	2.082	2.30	0.00	0.3	99.7	0.0	-0.04	0.86	0.78	2.35	3.7	0.003	0.51	0.0	0.04	14.14	0.00	1.961	6.52	0.16	2.9	97.1	0.0	1.24	0.69	0.86	0.80	2.18	56854	3639	22	0	6	0	28542	logfile

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