Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oEH	20020	2022-12-17	2019-03-27	3.8	3.93	—	3.7	0.010	1.38	0.0	0.07	11.62	0.01	2.381	2.81	0.00	0.0	0.0	0.0	—	0.38	0.77	—	3.7	0.007	1.05	0.0	0.04	5.09	0.00	2.203	12.25	0.00	0.0	0.0	0.0	—	0.52	0.40	0.80	—	32900	0	14	0	6580	0	0	logfile
✔	7LQE	23483	2022-12-11	2021-02-13	3.4	3.06	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.423	23.27	14.58	0.0	100.0	0.0	-5.94	0.57	0.80	5.06	3.2	0.151	5.19	239.0	0.38	25.39	0.02	1.743	134.65	4.63	60.4	38.2	1.4	-8.68	1.67	0.65	0.89	2.06	6048	576	72	0	0	0	0	logfile
✔	7R6M	24282	2022-12-11	2021-06-22	3.68	3.27	—	3.4	0.006	0.94	0.0	0.04	17.86	0.01	2.005	4.72	0.00	0.0	0.0	0.0	—	0.53	0.72	—	3.4	0.007	0.85	0.0	0.04	18.31	0.01	1.758	16.73	0.00	0.0	0.0	0.0	—	0.19	0.53	0.72	—	7755	0	3	362	13	0	0	logfile
✔	4UQ8	2676	2022-12-16	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	67.37	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.54	0.0	0.41	5.50	0.00	2.103	29.65	0.00	0.0	0.0	0.0	—	2.11	0.61	0.83	—	28647	33	54	0	5686	0	0	logfile
✔	7TD6	25824	2022-12-11	2021-12-30	3.0	3.41	3.09	3.4	0.002	0.57	0.0	0.05	16.47	0.00	2.449	7.94	0.00	0.0	100.0	0.0	-3.11	0.42	0.76	2.95	3.4	0.003	0.85	0.0	0.05	18.89	0.00	2.235	12.46	2.69	9.4	90.6	0.0	-4.01	1.09	0.43	0.78	3.77	5575	690	5	0	0	0	0	logfile
✔	7XSK	33425	2022-12-12	2022-05-14	3.53	4.49	3.42	3.4	0.001	0.44	0.0	0.02	15.94	0.00	1.970	6.98	0.00	0.0	0.0	0.0	—	0.90	0.76	—	3.4	0.006	0.66	0.0	0.04	18.19	0.01	1.742	27.91	0.00	0.0	0.0	0.0	—	1.08	0.91	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7LQG	23485	2022-12-12	2021-02-13	3.4	3.13	—	3.3	0.016	1.42	0.0	0.04	20.72	0.00	1.842	31.02	14.58	0.0	100.0	0.0	-5.94	0.61	0.81	5.57	3.2	0.110	4.37	186.0	0.30	23.68	0.02	1.819	119.87	4.75	35.8	64.2	0.0	-8.04	1.65	0.67	0.86	3.90	12096	1152	144	0	0	0	0	logfile
✔	6oDJ	20021	2022-12-15	2019-03-26	3.5	3.75	—	3.7	0.009	1.50	0.0	0.07	11.32	0.01	2.438	2.03	0.00	0.0	0.0	0.0	—	0.81	0.81	—	3.7	0.012	1.73	0.0	0.06	7.95	0.00	2.092	10.66	0.00	0.0	0.0	0.0	—	0.60	0.82	0.83	—	25415	0	17	0	5083	0	0	logfile
✔	6o1o	0454	2022-12-13	2019-02-21	3.8	4.00	—	3.6	0.008	1.55	0.0	0.07	15.00	0.01	2.295	4.58	0.00	0.0	0.0	0.0	—	0.72	0.70	—	3.6	0.012	1.72	0.0	0.07	13.69	0.00	1.998	30.49	0.00	0.0	0.0	0.0	—	1.70	0.78	0.76	—	15193	0	14	66	2757	0	0	logfile
✔	6LHV	0900	2022-12-13	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.59	—	4.4	0.009	1.36	0.0	0.05	6.54	0.00	2.055	51.70	0.00	0.0	0.0	0.0	—	3.58	0.84	0.81	—	8456	0	3	0	1707	0	0	logfile
✘	7PM3	13511	2022-12-18	2021-09-01	3.1	3.07	3.12	3.1	0.005	0.86	0.0	0.05	15.37	0.01	1.199	5.42	0.00	0.0	100.0	0.0	-0.98	0.85	0.82	3.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8940	1113	6	0	12	0	0	logfile
✔	6WL0	21814	2022-12-12	2020-04-17	4.4	4.62	—	4.4	0.006	0.82	0.0	0.04	18.91	0.00	2.353	8.18	0.00	0.0	100.0	0.0	-5.48	0.79	0.88	—	4.4	0.005	0.97	0.0	0.04	14.48	0.00	2.146	21.73	0.09	0.4	99.6	0.0	0.45	1.67	0.79	0.85	—	11480	1476	41	0	0	0	0	logfile
✔	6WL1	21815	2022-12-13	2020-04-17	4.0	4.02	—	4.0	0.007	0.81	0.0	0.05	7.85	0.00	2.413	3.17	0.00	0.0	100.0	0.0	-1.08	0.71	0.85	—	4.0	0.004	0.51	0.0	0.04	16.18	0.00	2.242	6.18	1.33	0.0	100.0	0.0	6.14	0.73	0.72	0.86	—	14612	1872	52	0	0	0	0	logfile
✔	6K9F	9948	2022-12-13	2019-06-15	3.7	7.50	4.15	7.2	0.002	0.45	0.0	0.03	11.87	0.00	2.356	5.29	0.00	0.0	100.0	0.0	-0.68	0.66	0.76	0.04	4.6	0.004	1.16	0.0	0.05	17.89	0.00	2.058	27.39	0.42	1.2	98.8	0.0	-0.22	3.70	0.67	0.84	0.57	8484	1044	12	0	0	0	0	logfile
✔	7LQH	23486	2022-12-12	2021-02-13	3.4	3.12	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.098	31.15	14.58	0.0	100.0	0.0	-5.94	0.59	0.80	5.83	3.2	0.111	4.24	195.0	0.31	24.08	0.02	1.604	112.51	5.21	40.1	59.5	0.3	-8.01	3.49	0.65	0.87	3.36	12096	1152	144	0	0	0	0	logfile
✔	7PBW	13307	2022-12-12	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.004	0.78	0.0	0.04	14.65	0.01	2.138	7.63	0.15	0.0	100.0	0.0	4.36	0.28	0.77	0.90	7.37	9500	873	54	0	81	230	0	logfile
✔	6ULC	20813	2022-12-14	2019-10-07	4.6	4.75	—	4.5	0.005	0.76	0.0	0.06	14.66	0.00	2.086	5.80	0.29	0.0	100.0	0.0	-4.46	0.79	0.67	—	4.5	0.005	0.84	0.0	0.06	14.08	0.00	2.061	23.42	0.00	12.8	87.1	0.0	-2.90	0.81	0.79	0.70	—	19968	2301	46	0	142	0	0	logfile
✔	6X5i	22051	2022-12-11	2020-05-26	4.3	4.27	—	4.0	0.060	2.85	210.0	0.16	31.34	0.00	2.206	29.57	0.00	0.0	0.0	0.0	—	0.70	0.70	—	4.0	0.010	1.52	210.0	0.14	25.91	0.00	1.249	62.11	0.00	0.0	0.0	0.0	—	3.32	0.68	0.73	—	4480	70	70	0	280	0	0	logfile
✔	6UES	20755	2022-12-11	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	6PoM	20416	2022-12-11	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	17.29	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.010	1.24	0.0	0.06	21.39	0.01	1.928	58.97	0.00	0.0	0.0	0.0	—	1.75	0.75	0.80	—	4937	0	2	230	0	0	0	logfile

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