Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6o1o	0454	2022-05-13	2019-02-21	3.8	4.00	—	3.6	0.008	1.55	0.0	0.07	15.00	0.01	2.295	4.58	0.00	0.0	0.0	0.0	—	0.72	0.70	—	3.6	0.012	1.72	0.0	0.07	13.69	0.00	1.998	30.49	0.00	0.0	0.0	0.0	—	1.70	0.78	0.76	—	15193	0	14	66	2757	0	0	logfile
✔	6TUQ	10594	2022-05-14	2020-01-08	3.9	4.52	—	4.0	0.009	1.01	0.0	0.05	11.22	0.00	2.191	8.45	3.12	0.0	100.0	0.0	-6.69	0.68	0.88	0.54	4.0	0.002	0.69	0.0	0.04	12.40	0.00	2.309	10.56	0.19	0.0	100.0	0.0	-0.42	1.66	0.69	0.88	0.80	16100	2300	50	0	0	0	0	logfile
✔	6WKX	21812	2022-05-13	2020-04-17	4.2	4.31	—	4.2	0.006	0.59	0.0	0.04	15.11	0.00	2.298	2.52	0.00	0.0	100.0	0.0	-3.67	0.77	0.90	—	4.2	0.004	0.66	0.0	0.04	16.54	0.00	2.187	8.89	0.00	0.0	100.0	0.0	4.22	1.00	0.77	0.89	—	12915	1575	105	0	0	0	0	logfile
✔	6WL1	21815	2022-05-13	2020-04-17	4.0	4.02	—	4.0	0.007	0.81	0.0	0.05	7.85	0.00	2.413	3.17	0.00	0.0	100.0	0.0	-1.08	0.71	0.85	—	4.0	0.004	0.51	0.0	0.04	16.18	0.00	2.242	6.18	1.33	0.0	100.0	0.0	6.14	0.73	0.72	0.86	—	14612	1872	52	0	0	0	0	logfile
✔	6oEH	20020	2022-05-16	2019-03-27	3.8	3.93	—	3.7	0.010	1.38	0.0	0.07	11.62	0.01	2.381	2.81	0.00	0.0	0.0	0.0	—	0.38	0.77	—	3.7	0.007	1.05	0.0	0.04	5.09	0.00	2.203	12.25	0.00	0.0	0.0	0.0	—	0.52	0.40	0.80	—	32900	0	14	0	6580	0	0	logfile
✔	6K9F	9948	2022-05-14	2019-06-15	3.7	7.50	4.15	7.2	0.002	0.45	0.0	0.03	11.87	0.00	2.356	5.29	0.00	0.0	100.0	0.0	-0.68	0.66	0.76	0.04	7.0	0.004	1.14	0.0	0.05	18.10	0.00	2.005	26.86	0.63	1.3	98.7	0.0	-0.41	3.86	0.67	0.84	0.10	8484	1044	12	0	0	0	0	logfile
✔	6PoS	20418	2022-05-12	2019-07-05	4.12	4.39	—	4.2	0.003	0.68	0.0	0.04	11.58	0.01	2.116	2.48	0.00	0.1	99.9	0.0	-2.43	0.80	0.77	—	4.2	0.002	0.54	0.0	0.04	13.02	0.00	1.917	9.17	0.03	2.9	97.1	0.0	0.18	1.02	0.82	0.80	—	53503	3425	20	0	13	0	26853	logfile
✘	7PLZ	13507	2022-05-15	2021-09-01	3.2	3.30	3.19	3.2	0.004	0.77	0.0	0.05	14.63	0.01	1.198	5.79	0.00	0.1	99.9	0.0	-1.13	0.88	0.84	2.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23278	2887	10	0	12	0	0	logfile
✔	7PME	13530	2022-05-15	2021-09-02	2.9	3.93	2.92	3.1	0.005	0.83	6.0	0.05	14.85	0.01	1.313	4.94	0.08	0.1	99.9	0.0	-1.26	0.93	0.86	3.45	3.1	0.004	0.67	3.0	0.04	15.63	0.00	1.895	7.78	0.80	2.0	98.0	0.0	1.56	0.63	0.94	0.89	3.01	23370	2906	15	0	15	0	0	logfile
✔	6ZLG	11265	2022-05-16	2020-06-30	3.0	3.18	—	3.1	0.003	0.44	0.0	0.03	16.50	0.00	2.180	7.60	4.15	0.1	99.9	0.0	1.26	0.80	0.87	2.98	3.1	0.003	0.39	0.0	0.03	17.79	0.00	2.131	6.39	3.02	1.5	98.5	0.0	5.23	1.17	0.81	0.89	2.69	33008	4072	24	0	0	0	0	logfile
✔	7EEi	31077	2022-05-13	2021-03-18	3.6	3.44	—	3.4	0.006	1.09	0.0	0.06	13.71	0.01	1.975	5.14	0.00	0.1	99.9	0.0	-1.90	0.77	0.77	1.99	3.4	0.003	0.64	0.0	0.04	15.17	0.00	2.174	7.84	0.61	5.6	94.4	0.0	0.22	1.24	0.80	0.79	2.26	9825	1400	1	0	0	0	0	logfile
✔	7PLU	13502	2022-05-15	2021-09-01	3.2	3.11	3.17	3.0	0.005	0.85	7.0	0.05	14.67	0.01	1.314	5.34	0.04	0.1	99.9	0.0	-1.57	0.89	0.82	3.39	3.0	0.004	0.66	3.0	0.04	15.77	0.00	1.861	8.81	0.20	1.5	98.5	0.0	1.10	1.28	0.91	0.87	2.59	23288	2906	13	0	9	0	0	logfile
✔	6WR2	21875	2022-05-17	2020-04-29	2.88	3.14	—	3.1	0.014	0.88	0.0	0.06	12.47	0.01	2.203	4.22	0.00	0.1	99.9	0.0	-0.06	0.51	0.72	2.95	3.1	0.003	0.55	0.0	0.04	17.16	0.00	1.989	6.42	1.04	2.2	97.8	0.0	1.25	1.61	0.70	0.89	4.01	42671	2729	34	0	0	14	21361	logfile
✘	7PM0	13508	2022-05-13	2021-09-01	3.6	3.89	3.65	3.6	0.005	0.83	0.0	0.05	14.98	0.01	1.200	5.05	0.00	0.2	99.8	0.0	-1.27	0.90	0.85	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10169	1261	3	0	4	0	0	logfile
✔	7M5o	23678	2022-05-13	2021-03-24	3.54	2.81	3.58	3.6	0.003	0.54	0.0	0.04	15.95	0.00	1.978	10.82	1.25	0.2	99.8	0.0	-2.03	0.79	0.75	1.08	3.6	0.003	0.62	0.0	0.04	17.38	0.01	1.998	13.05	0.89	4.0	96.0	0.0	0.30	1.24	0.79	0.76	1.37	11648	655	3	37	1	0	5635	logfile
✘	7PM2	13510	2022-05-13	2021-09-01	3.6	3.83	3.61	3.6	0.004	0.83	0.0	0.05	15.46	0.01	1.201	4.80	0.00	0.2	99.8	0.0	-1.45	0.89	0.84	2.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10156	1259	3	0	4	0	0	logfile
✘	7PM1	13509	2022-05-13	2021-09-01	3.5	3.74	3.64	3.5	0.004	0.80	0.0	0.05	14.86	0.01	1.201	5.09	0.00	0.2	99.8	0.0	-1.54	0.89	0.84	3.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10169	1261	3	0	4	0	0	logfile
✘	7PLY	13506	2022-05-13	2021-09-01	3.2	3.79	3.36	3.5	0.010	0.94	0.0	0.06	14.60	0.01	1.199	3.87	0.00	0.2	99.8	0.0	-1.06	0.89	0.85	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10149	1258	4	0	4	0	0	logfile
✔	7PML	13538	2022-05-13	2021-09-02	3.3	4.18	3.26	3.2	0.005	0.86	2.0	0.05	15.39	0.01	1.315	4.10	0.09	0.2	99.8	0.0	-1.35	0.91	0.83	2.88	3.3	0.002	0.65	1.0	0.04	15.82	0.00	1.990	6.97	0.00	1.2	98.8	0.0	1.88	0.71	0.94	0.88	2.35	10189	1264	6	0	6	0	0	logfile
✔	7PLW	13504	2022-05-13	2021-09-01	3.5	4.05	3.55	3.5	0.005	0.84	1.0	0.05	15.03	0.01	1.323	4.86	0.00	0.2	99.8	0.0	-1.69	0.91	0.83	3.00	3.5	0.003	0.64	1.0	0.04	15.70	0.00	2.044	8.43	0.09	1.4	98.6	0.0	1.02	1.31	0.91	0.85	2.28	10139	1263	5	0	3	0	0	logfile

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