Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PP8	20422	2021-08-10	2019-07-05	4.12	4.53	—	4.3	0.003	0.72	0.0	0.04	12.10	0.01	2.116	2.90	0.00	0.2	99.8	0.0	-2.36	0.80	0.76	—	4.3	0.004	0.60	0.0	0.04	12.78	0.00	1.823	11.51	0.00	4.7	95.3	0.0	-0.86	1.03	0.83	0.80	—	32335	2078	13	0	13	0	16234	logfile
✔	6ZVJ	11458	2021-08-09	2020-07-24	3.8	3.00	—	3.1	0.010	1.34	7.0	0.07	17.39	0.01	1.731	5.46	1.39	0.2	99.8	0.0	-4.19	0.59	0.64	1.31	3.0	0.005	0.76	0.0	0.04	17.52	0.00	1.529	15.95	0.30	6.1	93.9	0.0	-1.22	1.70	0.67	0.75	1.10	115020	10127	55	1720	9	0	0	logfile
✔	6W1X	21516	2021-08-09	2020-03-04	3.9	4.01	—	3.9	0.011	0.99	0.0	0.08	8.95	0.01	1.879	4.50	0.06	0.3	99.7	0.0	-0.99	0.75	0.72	0.89	3.9	0.005	0.72	0.0	0.04	14.87	0.01	2.092	13.71	0.62	4.9	95.1	0.0	-0.15	1.60	0.81	0.82	1.74	21735	2874	12	60	0	0	0	logfile
✔	6T93	10408	2021-08-08	2019-10-25	3.49	4.10	—	3.7	0.014	1.15	0.0	0.06	27.23	0.01	2.435	0.73	0.00	0.3	99.7	0.0	0.78	0.87	0.85	2.94	3.7	0.004	0.67	0.0	0.03	27.96	0.00	2.163	12.72	0.79	2.3	97.7	0.0	2.54	2.24	0.87	0.87	1.71	12199	758	10	302	0	0	0	logfile
✔	6C9i	7436	2021-08-09	2018-01-26	3.09	3.21	—	3.2	0.029	1.48	0.0	0.12	9.22	0.01	2.417	0.75	0.00	0.3	99.6	0.1	2.36	0.79	0.85	4.97	3.2	0.002	0.40	0.0	0.04	14.99	0.00	2.212	4.63	0.04	0.0	100.0	0.0	4.18	2.43	0.73	0.89	3.60	23700	3087	24	0	0	0	0	logfile
✔	6MDo	9102	2021-08-11	2018-09-04	3.9	5.46	—	4.2	0.015	1.44	0.0	0.11	13.31	0.01	2.012	6.67	0.16	0.3	99.6	0.0	-3.28	0.79	0.68	0.38	4.2	0.004	0.67	0.0	0.08	13.86	0.00	1.940	17.65	0.33	6.6	93.4	0.0	-1.05	1.59	0.87	0.84	0.12	45373	2843	13	0	11	0	22858	logfile
✔	6U1X	20614	2021-08-10	2019-08-17	3.0	3.37	3.11	3.3	0.004	0.55	0.0	0.04	10.38	0.00	1.986	3.73	0.11	0.3	99.7	0.0	-3.08	0.67	0.81	4.07	3.3	0.003	0.54	0.0	0.04	14.64	0.00	1.900	6.38	1.07	4.2	95.8	0.0	0.20	2.07	0.69	0.83	3.41	33529	2087	3	0	2	0	16768	logfile
✔	6T90	10406	2021-08-08	2019-10-25	3.05	3.74	—	3.3	0.022	1.52	0.0	0.09	24.61	0.01	2.459	0.46	0.00	0.3	99.7	0.0	1.02	0.84	0.81	4.34	3.3	0.003	0.59	0.0	0.03	26.52	0.00	2.046	9.11	0.40	1.5	98.5	0.0	2.74	2.94	0.86	0.87	2.52	13031	903	19	282	9	0	0	logfile
✔	6P6F	20261	2021-08-08	2019-06-03	4.5	4.71	4.50	4.6	0.017	1.59	0.0	0.09	9.24	0.01	2.442	0.07	0.00	0.3	99.7	0.0	0.73	0.71	0.82	—	4.6	0.004	0.91	0.0	0.05	12.30	0.01	2.154	20.55	0.00	2.6	97.4	0.0	-0.11	1.38	0.72	0.78	—	159840	21060	120	0	0	0	0	logfile
✔	6Po3	20408	2021-08-08	2019-07-03	4.28	4.38	—	4.3	0.003	0.65	0.0	0.04	11.03	0.00	2.179	2.53	0.00	0.4	99.6	0.0	-1.68	0.75	0.74	—	4.3	0.002	0.55	0.0	0.04	13.31	0.00	1.950	10.06	0.00	3.4	96.6	0.0	0.15	2.58	0.79	0.79	—	53225	3406	20	0	12	0	26724	logfile
✔	7KEJ	22839	2021-08-08	2020-10-11	3.8	3.55	—	3.6	0.020	1.72	0.0	0.10	9.97	0.01	1.201	0.59	0.00	0.4	99.6	0.0	1.20	0.82	0.84	4.49	3.4	0.004	0.65	0.0	0.04	14.65	0.00	2.125	6.64	0.35	2.4	97.6	0.0	0.22	1.67	0.82	0.83	3.52	13806	1740	18	0	24	0	0	logfile
✔	7KoG	22975	2021-08-08	2020-11-09	4.25	3.30	—	6.0	0.005	1.03	1.0	0.04	18.29	0.00	1.580	10.18	0.70	0.5	99.5	0.0	-6.22	0.69	0.62	—	3.8	0.003	0.76	0.0	0.04	16.55	0.00	2.164	11.61	0.05	0.5	99.5	0.0	2.74	2.19	0.75	0.76	—	17384	2154	2	0	0	0	0	logfile
✔	6WXG	21957	2021-08-13	2020-05-10	3.3	3.40	3.26	3.4	0.004	0.75	0.0	0.05	12.89	0.00	1.633	3.76	1.72	0.5	99.5	0.0	-4.10	0.55	0.82	3.72	3.4	0.007	0.65	0.0	0.04	15.57	0.00	1.846	7.51	0.12	5.1	94.8	0.1	-1.31	1.90	0.55	0.84	3.52	200960	12763	57	0	72	0	99251	logfile
✘	6T24	10366	2021-08-08	2019-10-07	3.7	3.44	3.63	3.6	0.019	1.73	0.0	0.09	12.41	0.01	1.162	2.67	0.00	0.5	99.5	0.0	0.74	0.68	0.80	2.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14910	1855	10	0	20	0	0	logfile
✔	6L3V	0827	2021-08-09	2019-10-15	2.63	2.90	2.72	2.9	0.011	0.92	0.0	0.04	17.00	0.01	2.218	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	2.9	0.002	0.59	0.0	0.03	16.41	0.00	2.191	2.41	1.52	0.5	99.5	0.0	2.58	3.59	0.59	0.86	2.76	19416	1206	12	0	6	0	9528	logfile
✔	3JAF	6346	2021-08-08	2015-06-08	3.8	2.26	—	3.8	0.025	1.93	0.0	0.10	10.09	0.01	2.134	18.84	0.70	0.6	99.4	0.0	-0.82	0.69	0.71	1.52	3.8	0.003	1.02	0.0	0.04	13.99	0.00	2.153	19.14	0.14	2.0	98.0	0.0	0.82	1.83	0.72	0.81	1.46	13865	1710	10	0	15	0	0	logfile
✔	6C9K	7437	2021-08-11	2018-01-26	3.49	5.32	—	5.0	0.016	1.08	0.0	0.07	11.33	0.01	2.388	0.33	0.00	0.6	99.4	0.0	1.74	0.55	0.28	0.81	5.0	0.003	0.60	0.0	0.04	14.67	0.00	2.163	15.69	0.28	1.9	98.1	0.0	3.50	0.95	0.81	0.67	-0.02	37632	4923	24	0	0	0	0	logfile
✔	6PP6	20420	2021-08-10	2019-07-05	4.28	4.54	—	4.3	0.004	0.71	0.0	0.04	11.88	0.00	2.179	3.17	0.00	0.6	99.4	0.0	-1.13	0.79	0.78	—	4.3	0.003	0.55	0.0	0.04	12.54	0.00	1.945	10.66	0.00	3.9	96.1	0.0	-0.54	1.04	0.81	0.81	—	32106	2062	13	0	12	0	16126	logfile
✔	6SHT	10205	2021-08-11	2019-08-08	2.73	2.88	2.78	2.8	0.015	1.55	0.0	0.07	17.80	0.01	0.000	10.21	5.56	0.6	98.8	0.6	-2.82	0.81	0.91	3.74	2.8	0.004	0.60	0.0	0.04	19.62	0.00	0.000	4.56	2.03	2.3	97.7	0.0	4.90	1.75	0.72	0.84	2.58	37152	4176	24	0	48	1728	0	logfile
✔	6PXM	20521	2021-08-10	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.61	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	2.3	0.002	0.43	0.0	0.03	17.65	0.00	2.202	3.26	0.09	1.8	98.2	0.0	5.35	1.49	0.78	0.89	3.87	32736	4080	24	0	0	0	0	logfile

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