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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6Z7Q | 11112 | 2022-12-13 | 2020-06-01 | 3.8 | 4.10 | 3.58 | 4.0 | 0.006 | 0.77 | 0.0 | 0.05 | 14.47 | 0.00 | 2.176 | 21.13 | 0.00 | 28.6 | 70.7 | 0.7 | -6.49 | 0.73 | 0.82 | 1.75 | 4.0 | 0.005 | 0.90 | 0.0 | 0.05 | 16.79 | 0.00 | 2.164 | 20.65 | 0.80 | 17.3 | 82.7 | 0.0 | -4.36 | 1.19 | 0.75 | 0.83 | 1.11 | 16665 | 2080 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KiQ | 9997 | 2022-12-13 | 2019-07-19 | 3.62 | 3.66 | — | 3.8 | 0.035 | 3.74 | 145.0 | 0.27 | 19.81 | 0.04 | 2.201 | 12.33 | 14.75 | 18.6 | 70.7 | 10.7 | -6.77 | 0.58 | 0.71 | 1.68 | 3.5 | 0.004 | 0.78 | 0.0 | 0.04 | 17.28 | 0.01 | 2.003 | 12.07 | 0.24 | 12.3 | 87.1 | 0.6 | -2.76 | 1.16 | 0.62 | 0.75 | 1.43 | 15093 | 968 | 3 | 0 | 0 | 0 | 7444 | logfile |
✘ | 5A7U | 3079 | 2022-12-18 | 2015-07-10 | 4.8 | 3.82 | — | 4.6 | 0.020 | 3.41 | 3.0 | 0.25 | 21.78 | 0.08 | 2.651 | 30.77 | 25.00 | 24.0 | 72.0 | 4.0 | -6.05 | -0.01 | 0.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 455 | 27 | 1 | 0 | 1 | 0 | 231 | logfile |
✘ | 6JSi | 9882 | 2022-12-19 | 2019-04-08 | 4.7 | 4.70 | — | 4.6 | 0.007 | 1.48 | 0.0 | 0.06 | 15.33 | 0.01 | 2.231 | 10.68 | 2.42 | 23.2 | 72.3 | 4.5 | -6.05 | 0.64 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62820 | 5844 | 9 | 0 | 4044 | 0 | 0 | logfile |
✔ | 6VW2 | 21410 | 2022-12-11 | 2020-02-18 | 3.4 | 3.62 | — | 3.8 | 0.006 | 1.13 | 0.0 | 0.06 | 14.20 | 0.01 | 2.292 | 24.13 | 0.00 | 27.3 | 72.7 | 0.0 | -4.46 | 0.42 | 0.71 | 2.71 | 3.9 | 0.005 | 0.96 | 0.0 | 0.05 | 14.94 | 0.00 | 2.171 | 15.12 | 0.95 | 19.5 | 80.5 | 0.0 | -4.88 | 0.44 | 0.40 | 0.72 | 1.55 | 1800 | 240 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DWV | 30887 | 2022-12-11 | 2021-01-18 | 3.07 | 2.95 | — | 3.6 | 0.007 | 0.80 | 0.0 | 0.06 | 14.69 | 0.00 | 2.258 | 17.63 | 0.00 | 26.8 | 73.2 | 0.0 | -7.45 | 0.41 | 0.75 | 4.09 | 4.1 | 0.004 | 0.73 | 0.0 | 0.05 | 17.17 | 0.00 | 2.189 | 19.08 | 0.00 | 23.2 | 76.8 | 0.0 | -5.96 | 1.50 | 0.40 | 0.75 | 2.79 | 2064 | 258 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VZF | 32227 | 2022-12-11 | 2021-11-16 | 2.95 | 2.71 | — | 3.0 | 0.009 | 1.06 | 0.0 | 0.06 | 16.23 | 0.01 | 1.971 | 38.83 | 0.00 | 26.5 | 73.5 | 0.0 | -5.56 | 0.30 | 0.43 | -0.13 | 2.8 | 0.004 | 0.91 | 0.0 | 0.05 | 18.86 | 0.00 | 2.102 | 13.65 | 4.61 | 18.2 | 81.8 | 0.0 | -4.30 | 1.96 | 0.37 | 0.63 | 0.33 | 2628 | 363 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ASK | 11895 | 2022-12-12 | 2020-10-27 | 4.3 | 4.39 | — | 4.3 | 0.028 | 2.98 | 47.0 | 0.22 | 18.83 | 0.02 | 0.766 | 14.33 | 2.58 | 16.8 | 73.5 | 9.7 | -6.06 | 0.17 | 0.51 | — | 4.3 | 0.021 | 1.32 | 2.0 | 0.05 | 15.46 | 0.01 | 2.042 | 17.93 | 0.00 | 18.5 | 80.0 | 1.5 | -3.37 | 1.32 | 0.19 | 0.60 | — | 12285 | 1523 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6Kio | 9996 | 2022-12-13 | 2019-07-19 | 3.94 | 4.22 | — | 3.9 | 0.035 | 3.43 | 48.0 | 0.22 | 17.77 | 0.04 | 2.231 | 11.34 | 8.39 | 18.6 | 74.1 | 7.3 | -6.45 | 0.56 | 0.66 | 1.26 | 3.8 | 0.003 | 0.72 | 0.0 | 0.04 | 17.11 | 0.00 | 2.004 | 11.80 | 0.12 | 7.1 | 92.5 | 0.4 | -1.30 | 1.67 | 0.65 | 0.77 | 1.34 | 15091 | 968 | 3 | 0 | 0 | 0 | 7442 | logfile |
✔ | 5LY6 | 4118 | 2022-12-11 | 2016-09-24 | 4.5 | 4.72 | — | 4.3 | 0.006 | 1.24 | 0.0 | 0.03 | 24.28 | 0.02 | 1.526 | 94.62 | 36.32 | 20.9 | 74.2 | 4.9 | -5.32 | 0.34 | 0.59 | — | 4.4 | 0.004 | 0.81 | 0.0 | 0.04 | 13.96 | 0.00 | 2.167 | 15.68 | 0.24 | 10.2 | 89.3 | 0.4 | -2.62 | 3.61 | 0.40 | 0.77 | — | 3725 | 471 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G2X | 3331 | 2022-12-14 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.31 | 0.0 | 0.02 | 11.56 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.004 | 0.83 | 0.0 | 0.04 | 19.26 | 0.01 | 1.964 | 33.23 | 0.23 | 18.1 | 80.7 | 1.3 | -5.17 | 1.94 | 0.80 | 0.66 | 0.62 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |
✔ | 3J9Q | 6270 | 2022-12-19 | 2015-02-17 | 3.5 | 3.51 | — | 3.5 | 0.008 | 1.16 | 0.0 | 0.06 | 14.05 | 0.00 | 2.284 | 4.67 | 8.68 | 19.1 | 75.1 | 5.8 | -5.24 | 0.60 | 0.82 | 2.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 99648 | 13224 | 48 | 0 | 0 | 0 | 0 | logfile |
✔ | 5Y5Y | 6811 | 2022-12-16 | 2017-08-10 | 4.7 | 4.66 | — | 4.6 | 0.027 | 2.87 | 128.0 | 0.17 | 18.51 | 0.03 | 2.246 | 4.76 | 9.44 | 16.3 | 75.1 | 8.6 | -5.44 | 0.70 | 0.77 | — | 4.6 | 0.004 | 0.91 | 0.0 | 0.05 | 14.86 | 0.01 | 2.103 | 15.73 | 0.00 | 9.3 | 90.3 | 0.4 | -1.48 | 1.76 | 0.69 | 0.81 | — | 32159 | 4164 | 15 | 0 | 2 | 0 | 0 | logfile |
✔ | 7TPP | 26060 | 2022-12-14 | 2022-01-25 | 4.1 | 4.39 | 4.20 | 7.9 | 0.002 | 0.53 | 0.0 | 0.04 | 9.16 | 0.00 | 2.240 | 10.18 | 2.87 | 21.8 | 75.4 | 2.8 | -5.30 | 0.70 | 0.35 | — | 7.8 | 0.004 | 0.90 | 0.0 | 0.05 | 12.27 | 0.01 | 2.016 | 33.40 | 0.00 | 16.5 | 83.4 | 0.2 | -3.98 | 1.53 | 0.78 | 0.63 | — | 18513 | 2309 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TGC | 10498 | 2022-12-20 | 2019-11-15 | 4.1 | 4.96 | — | 4.1 | 0.016 | 1.86 | 2.0 | 0.08 | 20.20 | 0.01 | 1.835 | 102.01 | 15.44 | 22.0 | 76.1 | 1.9 | -5.63 | 0.71 | 0.56 | — | 4.0 | 0.006 | 0.97 | 0.0 | 0.05 | 14.60 | 0.01 | 1.991 | 33.60 | 0.20 | 10.8 | 89.0 | 0.2 | -1.77 | 1.22 | 0.73 | 0.61 | — | 33282 | 3806 | 6 | 0 | 808 | 0 | 0 | logfile |
✔ | 6LYU | 30018 | 2022-12-12 | 2020-02-15 | 4.2 | 4.46 | — | 4.2 | 0.009 | 1.16 | 6.0 | 0.06 | 15.38 | 0.01 | 1.986 | 57.04 | 1.18 | 23.1 | 76.2 | 0.7 | -6.16 | 0.86 | 0.81 | — | 4.2 | 0.003 | 0.81 | 0.0 | 0.04 | 13.99 | 0.00 | 2.033 | 23.04 | 0.00 | 12.1 | 87.7 | 0.1 | -2.80 | 0.85 | 0.85 | 0.79 | — | 11118 | 1430 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6H3J | 0134 | 2022-12-14 | 2018-07-18 | 3.7 | 3.83 | — | 3.7 | 0.007 | 0.87 | 0.0 | 0.05 | 10.17 | 0.00 | 2.025 | 43.43 | 0.05 | 23.8 | 76.2 | 0.0 | -6.63 | 0.77 | 0.85 | 3.89 | 3.7 | 0.005 | 0.65 | 0.0 | 0.04 | 13.39 | 0.00 | 1.860 | 56.32 | 0.32 | 21.3 | 78.7 | 0.0 | -4.95 | 2.68 | 0.78 | 0.86 | 2.86 | 20301 | 2511 | 3 | 0 | 0 | 0 | 212 | logfile |
✔ | 7NNH | 12477 | 2022-12-11 | 2021-02-24 | 4.0 | 5.15 | — | 4.2 | 0.004 | 1.27 | 0.0 | 0.05 | 15.82 | 0.01 | 2.066 | 35.16 | 0.34 | 23.0 | 76.5 | 0.5 | -3.61 | 0.74 | 0.80 | — | 4.2 | 0.003 | 1.12 | 0.0 | 0.05 | 16.96 | 0.01 | 2.112 | 27.04 | 0.17 | 20.2 | 79.5 | 0.3 | -2.67 | 1.12 | 0.74 | 0.79 | — | 5299 | 637 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BW7 | 30229 | 2022-12-12 | 2020-04-13 | 4.1 | 4.55 | 4.28 | 4.4 | 0.008 | 1.06 | 0.0 | 0.06 | 16.20 | 0.01 | 2.050 | 40.19 | 0.00 | 23.4 | 76.6 | 0.0 | -5.62 | 0.73 | 0.67 | — | 4.4 | 0.006 | 0.92 | 0.0 | 0.05 | 15.37 | 0.01 | 2.082 | 28.44 | 0.00 | 18.6 | 81.3 | 0.1 | -4.32 | 0.71 | 0.72 | 0.67 | — | 8824 | 1091 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M62 | 23687 | 2022-12-11 | 2021-03-25 | 3.9 | 3.91 | — | 4.3 | 0.007 | 1.13 | 0.0 | 0.07 | 14.83 | 0.00 | 2.321 | 32.83 | 0.00 | 23.3 | 76.7 | 0.0 | -4.97 | 0.55 | 0.62 | 2.27 | 4.3 | 0.003 | 0.99 | 0.0 | 0.05 | 15.87 | 0.00 | 2.105 | 21.17 | 0.00 | 22.7 | 77.3 | 0.0 | -4.56 | 2.11 | 0.57 | 0.65 | 3.17 | 2380 | 320 | 10 | 0 | 10 | 0 | 0 | logfile |