Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Z7Q	11112	2022-12-13	2020-06-01	3.8	4.10	3.58	4.0	0.006	0.77	0.0	0.05	14.47	0.00	2.176	21.13	0.00	28.6	70.7	0.7	-6.49	0.73	0.82	1.75	4.0	0.005	0.90	0.0	0.05	16.79	0.00	2.164	20.65	0.80	17.3	82.7	0.0	-4.36	1.19	0.75	0.83	1.11	16665	2080	5	0	0	0	0	logfile
✔	6KiQ	9997	2022-12-13	2019-07-19	3.62	3.66	—	3.8	0.035	3.74	145.0	0.27	19.81	0.04	2.201	12.33	14.75	18.6	70.7	10.7	-6.77	0.58	0.71	1.68	3.5	0.004	0.78	0.0	0.04	17.28	0.01	2.003	12.07	0.24	12.3	87.1	0.6	-2.76	1.16	0.62	0.75	1.43	15093	968	3	0	0	0	7444	logfile
✘	5A7U	3079	2022-12-18	2015-07-10	4.8	3.82	—	4.6	0.020	3.41	3.0	0.25	21.78	0.08	2.651	30.77	25.00	24.0	72.0	4.0	-6.05	-0.01	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✘	6JSi	9882	2022-12-19	2019-04-08	4.7	4.70	—	4.6	0.007	1.48	0.0	0.06	15.33	0.01	2.231	10.68	2.42	23.2	72.3	4.5	-6.05	0.64	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62820	5844	9	0	4044	0	0	logfile
✔	6VW2	21410	2022-12-11	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.005	0.96	0.0	0.05	14.94	0.00	2.171	15.12	0.95	19.5	80.5	0.0	-4.88	0.44	0.40	0.72	1.55	1800	240	10	0	0	0	0	logfile
✔	7DWV	30887	2022-12-11	2021-01-18	3.07	2.95	—	3.6	0.007	0.80	0.0	0.06	14.69	0.00	2.258	17.63	0.00	26.8	73.2	0.0	-7.45	0.41	0.75	4.09	4.1	0.004	0.73	0.0	0.05	17.17	0.00	2.189	19.08	0.00	23.2	76.8	0.0	-5.96	1.50	0.40	0.75	2.79	2064	258	6	0	0	0	0	logfile
✔	7VZF	32227	2022-12-11	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.83	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.004	0.91	0.0	0.05	18.86	0.00	2.102	13.65	4.61	18.2	81.8	0.0	-4.30	1.96	0.37	0.63	0.33	2628	363	3	0	0	0	0	logfile
✔	7ASK	11895	2022-12-12	2020-10-27	4.3	4.39	—	4.3	0.028	2.98	47.0	0.22	18.83	0.02	0.766	14.33	2.58	16.8	73.5	9.7	-6.06	0.17	0.51	—	4.3	0.021	1.32	2.0	0.05	15.46	0.01	2.042	17.93	0.00	18.5	80.0	1.5	-3.37	1.32	0.19	0.60	—	12285	1523	1	0	2	0	0	logfile
✔	6Kio	9996	2022-12-13	2019-07-19	3.94	4.22	—	3.9	0.035	3.43	48.0	0.22	17.77	0.04	2.231	11.34	8.39	18.6	74.1	7.3	-6.45	0.56	0.66	1.26	3.8	0.003	0.72	0.0	0.04	17.11	0.00	2.004	11.80	0.12	7.1	92.5	0.4	-1.30	1.67	0.65	0.77	1.34	15091	968	3	0	0	0	7442	logfile
✔	5LY6	4118	2022-12-11	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.81	0.0	0.04	13.96	0.00	2.167	15.68	0.24	10.2	89.3	0.4	-2.62	3.61	0.40	0.77	—	3725	471	1	0	0	0	0	logfile
✔	5G2X	3331	2022-12-14	2016-04-16	3.8	3.49	—	3.4	0.001	0.31	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.004	0.83	0.0	0.04	19.26	0.01	1.964	33.23	0.23	18.1	80.7	1.3	-5.17	1.94	0.80	0.66	0.62	19072	487	3	704	0	0	0	logfile
✔	3J9Q	6270	2022-12-19	2015-02-17	3.5	3.51	—	3.5	0.008	1.16	0.0	0.06	14.05	0.00	2.284	4.67	8.68	19.1	75.1	5.8	-5.24	0.60	0.82	2.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	99648	13224	48	0	0	0	0	logfile
✔	5Y5Y	6811	2022-12-16	2017-08-10	4.7	4.66	—	4.6	0.027	2.87	128.0	0.17	18.51	0.03	2.246	4.76	9.44	16.3	75.1	8.6	-5.44	0.70	0.77	—	4.6	0.004	0.91	0.0	0.05	14.86	0.01	2.103	15.73	0.00	9.3	90.3	0.4	-1.48	1.76	0.69	0.81	—	32159	4164	15	0	2	0	0	logfile
✔	7TPP	26060	2022-12-14	2022-01-25	4.1	4.39	4.20	7.9	0.002	0.53	0.0	0.04	9.16	0.00	2.240	10.18	2.87	21.8	75.4	2.8	-5.30	0.70	0.35	—	7.8	0.004	0.90	0.0	0.05	12.27	0.01	2.016	33.40	0.00	16.5	83.4	0.2	-3.98	1.53	0.78	0.63	—	18513	2309	5	0	0	0	0	logfile
✔	6TGC	10498	2022-12-20	2019-11-15	4.1	4.96	—	4.1	0.016	1.86	2.0	0.08	20.20	0.01	1.835	102.01	15.44	22.0	76.1	1.9	-5.63	0.71	0.56	—	4.0	0.006	0.97	0.0	0.05	14.60	0.01	1.991	33.60	0.20	10.8	89.0	0.2	-1.77	1.22	0.73	0.61	—	33282	3806	6	0	808	0	0	logfile
✔	6LYU	30018	2022-12-12	2020-02-15	4.2	4.46	—	4.2	0.009	1.16	6.0	0.06	15.38	0.01	1.986	57.04	1.18	23.1	76.2	0.7	-6.16	0.86	0.81	—	4.2	0.003	0.81	0.0	0.04	13.99	0.00	2.033	23.04	0.00	12.1	87.7	0.1	-2.80	0.85	0.85	0.79	—	11118	1430	5	0	0	0	0	logfile
✔	6H3J	0134	2022-12-14	2018-07-18	3.7	3.83	—	3.7	0.007	0.87	0.0	0.05	10.17	0.00	2.025	43.43	0.05	23.8	76.2	0.0	-6.63	0.77	0.85	3.89	3.7	0.005	0.65	0.0	0.04	13.39	0.00	1.860	56.32	0.32	21.3	78.7	0.0	-4.95	2.68	0.78	0.86	2.86	20301	2511	3	0	0	0	212	logfile
✔	7NNH	12477	2022-12-11	2021-02-24	4.0	5.15	—	4.2	0.004	1.27	0.0	0.05	15.82	0.01	2.066	35.16	0.34	23.0	76.5	0.5	-3.61	0.74	0.80	—	4.2	0.003	1.12	0.0	0.05	16.96	0.01	2.112	27.04	0.17	20.2	79.5	0.3	-2.67	1.12	0.74	0.79	—	5299	637	1	0	0	0	0	logfile
✔	7BW7	30229	2022-12-12	2020-04-13	4.1	4.55	4.28	4.4	0.008	1.06	0.0	0.06	16.20	0.01	2.050	40.19	0.00	23.4	76.6	0.0	-5.62	0.73	0.67	—	4.4	0.006	0.92	0.0	0.05	15.37	0.01	2.082	28.44	0.00	18.6	81.3	0.1	-4.32	0.71	0.72	0.67	—	8824	1091	3	0	0	0	0	logfile
✔	7M62	23687	2022-12-11	2021-03-25	3.9	3.91	—	4.3	0.007	1.13	0.0	0.07	14.83	0.00	2.321	32.83	0.00	23.3	76.7	0.0	-4.97	0.55	0.62	2.27	4.3	0.003	0.99	0.0	0.05	15.87	0.00	2.105	21.17	0.00	22.7	77.3	0.0	-4.56	2.11	0.57	0.65	3.17	2380	320	10	0	10	0	0	logfile

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