Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5LY6	4118	2022-07-03	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.81	0.0	0.04	13.96	0.00	2.167	15.68	0.24	10.2	89.3	0.4	-2.62	3.61	0.40	0.77	—	3725	471	1	0	0	0	0	logfile
✔	5G2X	3331	2022-07-04	2016-04-16	3.8	3.49	—	3.4	0.001	0.31	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.004	0.76	0.0	0.04	17.15	0.01	1.994	28.48	0.45	18.5	80.5	1.1	-4.42	1.71	0.79	0.64	0.68	19072	487	3	704	0	0	0	logfile
✔	3J9Q	6270	2022-07-06	2015-02-17	3.5	3.51	—	3.5	0.008	1.16	0.0	0.06	14.05	0.00	2.284	4.67	8.68	19.1	75.1	5.8	-5.24	0.60	0.82	2.71	3.5	0.006	0.91	0.0	0.05	16.24	0.01	1.959	16.68	1.07	12.7	85.8	1.6	-2.08	0.90	0.61	0.83	2.64	99648	13224	48	0	0	0	0	logfile
✔	5Y5Y	6811	2022-07-06	2017-08-10	4.7	4.66	—	4.6	0.027	2.87	128.0	0.17	18.51	0.03	2.246	4.76	9.44	16.3	75.1	8.6	-5.44	0.70	0.77	—	4.6	0.007	1.01	0.0	0.05	15.19	0.01	2.040	19.31	0.00	10.8	88.8	0.5	-1.68	1.75	0.70	0.82	—	32159	4164	15	0	2	0	0	logfile
✔	7TPP	26060	2022-07-04	2022-01-25	4.1	4.39	4.20	7.9	0.002	0.53	0.0	0.04	9.16	0.00	2.240	10.18	2.87	21.8	75.4	2.8	-5.30	0.70	0.35	—	7.8	0.004	0.84	0.0	0.05	12.03	0.00	2.001	29.05	0.00	14.1	85.6	0.3	-3.91	1.28	0.78	0.69	—	18513	2309	5	0	0	0	0	logfile
✔	6TGC	10498	2022-07-07	2019-11-15	4.1	4.96	—	4.1	0.016	1.86	2.0	0.08	20.20	0.01	1.835	102.01	15.44	22.0	76.1	1.9	-5.63	0.71	0.56	—	4.0	0.010	1.25	0.0	0.06	14.68	0.01	1.927	50.23	0.20	13.2	86.5	0.3	-2.23	1.26	0.73	0.59	—	33282	3806	6	0	808	0	0	logfile
✔	7ASo	11902	2022-07-05	2020-10-27	3.11	3.89	—	3.0	0.007	1.05	3.0	0.10	22.66	0.00	1.837	24.04	13.50	22.1	76.1	1.9	-5.91	0.58	0.45	0.91	3.0	0.005	0.72	1.0	0.04	20.78	0.00	1.777	16.67	0.59	12.5	87.3	0.2	-3.99	1.32	0.86	0.83	1.35	125530	4741	47	4249	0	0	0	logfile
✔	6LYU	30018	2022-07-03	2020-02-15	4.2	4.46	—	4.2	0.009	1.16	6.0	0.06	15.38	0.01	1.986	57.04	1.18	23.1	76.2	0.7	-6.16	0.86	0.81	—	4.2	0.005	0.83	0.0	0.04	14.02	0.01	2.039	28.36	0.00	13.6	86.2	0.1	-2.93	0.81	0.86	0.80	—	11118	1430	5	0	0	0	0	logfile
✔	6H3J	0134	2022-07-04	2018-07-18	3.7	3.83	—	3.7	0.007	0.87	0.0	0.05	10.17	0.00	2.025	43.43	0.05	23.8	76.2	0.0	-6.63	0.77	0.85	3.89	3.7	0.005	0.65	0.0	0.04	13.39	0.00	1.860	56.31	0.32	21.3	78.7	0.0	-4.95	2.68	0.78	0.86	2.86	20301	2511	3	0	0	0	212	logfile
✔	7NNH	12477	2022-07-03	2021-02-24	4.0	5.15	—	4.2	0.004	1.27	0.0	0.05	15.82	0.01	2.066	35.16	0.34	23.0	76.5	0.5	-3.61	0.74	0.80	—	4.2	0.003	1.12	0.0	0.05	16.95	0.00	2.060	28.00	0.34	21.4	78.4	0.2	-2.67	0.75	0.75	0.80	—	5299	637	1	0	0	0	0	logfile
✔	7BW7	30229	2022-07-03	2020-04-13	4.1	4.55	4.28	4.4	0.008	1.06	0.0	0.06	16.20	0.01	2.050	40.19	0.00	23.4	76.6	0.0	-5.62	0.73	0.67	—	4.4	0.004	0.82	0.0	0.05	15.22	0.00	2.112	22.30	0.10	15.8	84.2	0.0	-3.98	0.72	0.71	0.66	—	8824	1091	3	0	0	0	0	logfile
✔	7M62	23687	2022-07-02	2021-03-25	3.9	3.91	—	4.3	0.007	1.13	0.0	0.07	14.83	0.00	2.321	32.83	0.00	23.3	76.7	0.0	-4.97	0.55	0.62	2.27	4.3	0.003	0.99	0.0	0.05	15.87	0.00	2.105	21.17	0.00	22.7	77.3	0.0	-4.56	2.11	0.57	0.65	3.17	2380	320	10	0	10	0	0	logfile
✔	6TD6	10464	2022-07-04	2019-11-07	4.76	5.03	—	4.8	0.010	1.11	0.0	0.07	16.37	0.01	1.777	55.96	0.35	22.8	76.8	0.4	-6.33	0.62	0.70	—	4.8	0.004	0.69	0.0	0.04	14.83	0.00	1.896	20.31	0.00	11.6	88.4	0.0	-1.62	1.43	0.60	0.69	—	15680	982	4	0	3	0	7766	logfile
✘	6oF4	20042	2022-07-03	2019-03-28	3.2	2.71	—	3.6	0.010	1.19	0.0	0.06	15.12	0.01	2.091	11.85	2.54	19.6	76.8	3.5	-4.99	0.79	0.82	1.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10998	1422	4	0	0	0	0	logfile
✘	4UY8	2773	2022-07-06	2014-08-29	3.8	4.07	—	4.1	0.010	1.50	8.0	0.07	15.49	0.01	0.879	12.40	11.16	16.3	76.9	6.8	-5.04	0.53	0.64	0.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	92995	3468	47	3049	144	439	8	logfile
✔	5ND4	3622	2022-07-03	2017-03-07	4.4	5.55	—	5.5	0.010	1.69	11.0	0.20	21.69	0.01	1.678	26.84	15.57	14.5	77.1	8.3	-4.90	0.37	0.37	—	5.4	0.004	1.07	0.0	0.05	15.55	0.01	1.558	30.06	0.10	7.2	92.3	0.4	-1.85	1.92	0.48	0.71	—	9435	1175	6	1	6	0	0	logfile
✘	3J7Z	6057	2022-07-05	2014-08-27	3.9	3.80	—	3.9	0.009	1.42	5.0	0.07	15.55	0.01	1.208	11.71	10.91	16.3	77.2	6.5	-5.00	0.75	0.70	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	90700	3453	36	2975	1	0	0	logfile
✔	6HV8	0287	2022-07-03	2018-10-10	4.4	4.51	—	4.4	0.009	1.62	2.0	0.08	10.20	0.01	1.472	9.02	1.31	22.1	77.3	0.6	-4.84	0.74	0.72	—	4.4	0.003	0.84	0.0	0.05	12.81	0.00	2.114	14.96	0.00	13.7	86.3	0.0	-2.66	1.01	0.74	0.71	—	9206	1184	2	0	2	0	0	logfile
✔	7CN9	30419	2022-07-05	2020-07-30	4.7	4.78	—	4.7	0.010	1.16	0.0	0.07	15.31	0.01	1.927	47.56	2.39	21.4	77.5	1.1	-5.89	0.53	0.74	—	4.7	0.008	0.97	1.0	0.05	13.66	0.01	1.664	22.34	0.04	11.8	88.1	0.1	-3.07	1.37	0.51	0.71	—	24052	3058	19	0	56	0	0	logfile
✔	6i0Y	0322	2022-07-06	2018-10-26	3.2	4.80	—	4.7	0.010	1.49	8.0	0.07	15.55	0.01	0.682	13.08	11.41	16.0	77.5	6.5	-5.00	0.59	0.58	0.26	4.7	0.005	0.83	0.0	0.04	16.07	0.01	0.990	21.89	1.57	13.8	84.2	2.0	-2.85	1.60	0.59	0.70	0.58	93619	3551	48	3049	144	439	0	logfile

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