Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PPL	20442	2022-12-11	2019-07-08	3.02	3.14	—	3.1	0.010	0.99	0.0	0.25	14.17	0.01	1.917	3.57	0.23	2.7	97.3	0.0	-6.00	0.74	0.86	4.10	3.1	0.004	0.65	0.0	0.05	16.12	0.00	2.116	6.52	0.23	2.8	97.2	0.0	-0.72	1.92	0.74	0.88	3.40	8155	980	6	0	4	0	0	logfile
✔	6UFR	20759	2022-12-11	2019-09-24	2.5	2.80	—	2.8	0.012	0.96	0.0	0.07	13.71	0.01	2.209	5.48	0.00	6.6	93.4	0.0	-1.99	0.50	0.87	5.55	2.8	0.004	0.63	0.0	0.06	17.00	0.00	2.402	2.46	2.95	4.8	95.2	0.0	-0.87	0.98	0.51	0.89	5.06	4420	630	20	0	0	90	0	logfile
✘	6ioL	9696	2022-12-22	2018-10-30	3.76	3.62	3.77	3.8	0.005	0.97	0.0	0.06	10.77	0.01	2.201	5.12	0.33	5.6	94.4	0.0	-4.06	0.63	0.80	2.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49077	6450	12	0	0	0	0	logfile
✔	6RLB	4918	2022-12-14	2019-05-01	4.5	4.85	4.49	4.3	0.007	0.95	0.0	0.06	4.70	0.00	2.082	0.71	0.00	4.0	95.9	0.0	-1.08	0.80	0.63	—	4.2	0.003	0.72	0.0	0.04	5.19	0.00	2.243	3.44	0.00	11.3	88.6	0.0	-0.76	1.85	0.86	0.66	—	20407	4122	14	0	0	0	0	logfile
✔	6PSY	20468	2022-12-12	2019-07-14	2.8	2.96	—	3.0	0.007	1.08	0.0	0.06	11.32	0.01	2.256	8.88	0.40	8.3	91.7	0.0	-4.87	0.59	0.74	3.67	3.0	0.004	0.68	0.0	0.04	16.61	0.00	2.184	14.29	2.85	7.4	92.6	0.0	-1.24	1.26	0.64	0.80	3.07	11540	1429	4	0	4	0	0	logfile
✔	6SST	10305	2022-12-11	2019-09-09	3.4	3.46	—	3.4	0.009	0.94	0.0	0.07	16.79	0.00	2.430	5.73	2.13	10.1	89.9	0.0	-4.47	0.56	0.80	6.33	3.4	0.005	0.69	0.0	0.05	15.22	0.00	2.342	10.76	0.21	14.6	85.4	0.0	-4.82	0.49	0.59	0.84	5.27	4900	730	10	0	0	0	0	logfile
✔	6KS8	0760	2022-12-12	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.95	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.004	0.80	1.0	0.05	11.72	0.00	2.042	24.03	0.00	4.6	95.3	0.0	-0.71	1.94	0.82	0.74	—	61943	8120	16	0	0	0	0	logfile
✔	6N3B	9350	2022-12-11	2018-11-14	3.8	3.75	—	4.0	0.010	1.21	0.0	0.05	11.40	0.01	2.253	20.70	0.00	13.7	86.3	0.0	-5.17	0.41	0.71	2.90	4.0	0.005	0.87	0.0	0.04	16.51	0.01	2.102	26.34	1.51	13.2	86.8	0.0	-5.29	1.48	0.42	0.71	1.88	2735	385	10	0	0	0	0	logfile
✔	6DJo	7938	2022-12-12	2018-05-25	3.6	3.75	—	3.7	0.009	0.94	0.0	0.06	10.85	0.01	2.053	6.86	0.96	4.9	95.1	0.0	-4.76	0.69	0.84	3.42	3.6	0.005	0.70	0.0	0.05	15.01	0.00	1.897	9.05	0.56	5.9	94.1	0.0	-1.71	2.19	0.70	0.85	2.85	11748	1488	8	0	8	0	0	logfile
✔	6MHW	9120	2022-12-18	2018-09-18	4.0	4.10	3.97	4.0	0.004	0.62	0.0	0.13	7.02	0.00	1.933	7.04	0.00	3.4	96.6	0.0	-2.09	0.79	0.77	—	4.0	0.003	0.67	0.0	0.12	12.85	0.00	1.905	10.25	0.25	5.4	94.6	0.0	1.46	1.49	0.79	0.79	—	34414	2452	4	0	0	0	16514	logfile
✔	6DJM	7936	2022-12-12	2018-05-25	3.1	3.26	—	3.2	0.010	1.01	0.0	0.06	10.99	0.01	2.069	3.69	0.00	4.2	95.8	0.0	-4.16	0.67	0.84	3.65	3.2	0.003	0.57	0.0	0.04	15.21	0.00	1.964	7.54	0.16	4.1	95.9	0.0	-0.33	1.26	0.68	0.86	2.94	11768	1488	12	0	8	4	0	logfile
✔	5YW7	6847	2022-12-12	2017-11-29	4.4	4.45	4.13	4.3	0.004	0.71	1.0	0.05	13.01	0.01	2.246	14.19	6.49	4.3	95.7	0.0	-2.58	0.70	0.79	—	4.3	0.003	0.71	0.0	0.04	13.20	0.00	2.213	13.09	0.00	3.6	96.4	0.0	0.59	1.48	0.71	0.80	—	8944	1140	1	0	2	0	0	logfile
✘	6RKo	4908	2022-12-18	2019-04-30	2.68	2.73	—	2.7	0.008	0.98	1.0	0.04	17.31	0.00	1.130	8.11	0.42	1.4	98.6	0.0	-4.70	0.73	0.88	4.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7289	875	8	0	9	31	0	logfile
✔	6K0B	9900	2022-12-15	2019-05-05	4.3	4.49	—	4.2	0.003	0.78	0.0	0.04	14.21	0.01	2.011	5.73	0.66	6.1	93.9	0.0	-3.67	0.84	0.69	—	4.2	0.003	0.67	0.0	0.04	15.17	0.00	2.093	21.43	0.00	7.3	92.6	0.1	-0.56	1.78	0.88	0.79	—	25908	1376	16	682	2	0	0	logfile
✔	6V3E	21034	2022-12-22	2019-11-25	4.4	4.86	—	3.6	0.002	0.45	0.0	0.03	14.34	0.02	2.039	11.31	0.05	2.4	97.6	0.0	-1.40	0.88	0.74	—	3.6	0.008	0.97	0.0	0.05	17.24	0.01	1.330	44.05	0.00	6.6	93.3	0.1	-1.49	1.77	0.90	0.79	—	50850	2311	20	1528	0	0	0	logfile
✔	6N3A	9349	2022-12-11	2018-11-14	3.3	3.44	—	3.6	0.008	1.14	0.0	0.05	14.53	0.01	2.469	17.25	0.00	8.9	91.1	0.0	-5.23	0.49	0.76	3.75	3.6	0.005	0.96	0.0	0.04	19.28	0.00	2.210	17.25	2.05	10.2	89.8	0.0	-5.15	1.99	0.51	0.79	2.70	4310	600	20	0	0	0	0	logfile
✔	6J0F	9763	2022-12-14	2018-12-24	3.8	3.95	—	3.9	0.007	1.04	0.0	0.06	15.76	0.01	2.265	5.30	2.19	4.9	95.1	0.0	-4.54	0.64	0.86	2.41	3.9	0.005	0.80	0.0	0.05	17.01	0.00	2.141	12.00	0.78	7.5	92.5	0.0	-1.35	2.05	0.64	0.86	2.05	19314	2472	12	0	0	0	0	logfile
✔	6MHV	9119	2022-12-19	2018-09-18	3.5	3.64	3.43	3.6	0.006	0.85	4.0	0.13	7.65	0.00	1.624	6.49	0.00	4.1	95.9	0.0	-1.96	0.75	0.80	3.89	3.6	0.003	0.65	0.0	0.12	13.50	0.00	1.948	6.18	0.06	3.3	96.7	0.0	1.94	1.85	0.76	0.82	3.89	35496	2452	4	0	0	0	17152	logfile
✔	6PPU	20447	2022-12-12	2019-07-08	3.5	3.56	—	3.5	0.009	1.18	2.0	0.07	15.05	0.01	1.855	11.03	3.10	7.9	92.1	0.0	-5.80	0.76	0.84	3.72	3.5	0.002	0.65	0.0	0.04	16.86	0.00	2.175	6.59	0.12	4.2	95.8	0.0	-1.93	0.59	0.76	0.84	2.60	10104	1302	4	29	53	0	0	logfile
✔	6SWY	10333	2022-12-13	2019-09-24	3.2	3.32	3.04	3.3	0.004	0.62	0.0	0.04	14.00	0.00	2.202	6.36	0.06	6.0	94.0	0.0	0.07	0.78	0.86	2.96	3.3	0.003	0.54	0.0	0.04	15.46	0.00	2.250	5.70	0.29	5.1	94.9	0.0	1.23	0.29	0.79	0.88	2.51	16057	1876	5	0	154	0	0	logfile

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