Table showing results for July 2022

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7CRB	30449	2022-07-03	2020-08-13	3.16	3.51	—	3.4	0.005	0.81	2.0	0.05	13.84	0.00	2.288	8.72	0.77	8.8	91.2	0.0	-2.29	0.75	0.82	3.00	3.4	0.004	0.67	0.0	0.04	15.57	0.00	2.239	9.90	0.38	8.0	92.0	0.0	-1.15	1.16	0.72	0.82	2.63	6806	851	2	0	0	0	0	logfile
✘	6LQG	0944	2022-07-03	2020-01-13	3.1	3.24	—	3.2	0.006	0.94	0.0	0.06	10.67	0.01	1.220	3.81	0.27	5.0	95.0	0.0	-3.57	0.65	0.84	3.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10855	1315	13	0	27	0	0	logfile
✔	7C9i	30312	2022-07-03	2020-06-05	3.1	3.26	—	3.2	0.008	1.04	0.0	0.06	10.90	0.01	2.232	3.17	0.18	6.3	93.7	0.0	-3.93	0.66	0.83	3.89	3.2	0.005	0.66	0.0	0.04	14.50	0.00	2.099	5.93	0.18	5.6	94.4	0.0	-0.33	0.48	0.68	0.86	2.62	10853	1314	13	0	26	0	0	logfile
✔	6W6K	21558	2022-07-07	2020-03-17	3.6	3.84	—	3.7	0.002	0.47	0.0	0.03	14.66	0.00	2.113	10.39	0.00	6.9	93.1	0.0	-4.28	0.70	0.59	0.52	3.7	0.007	0.92	1.0	0.04	17.11	0.01	1.510	21.81	0.44	12.4	87.6	0.1	-3.12	0.82	0.74	0.67	0.42	46934	1873	19	1534	1	0	0	logfile
✘	6LR4	0957	2022-07-03	2020-01-15	3.0	3.16	—	3.1	0.007	0.95	0.0	0.06	10.63	0.01	1.220	2.99	0.09	5.8	94.2	0.0	-3.96	0.64	0.84	4.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10838	1314	13	0	27	0	0	logfile
✘	7D8X	30614	2022-07-03	2020-10-11	2.6	2.78	—	2.7	0.008	1.08	0.0	0.06	11.19	0.01	1.183	3.34	0.18	5.1	94.9	0.0	-3.36	0.70	0.86	4.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10928	1314	13	0	28	0	0	logfile
✔	6XG6	22174	2022-07-03	2020-06-17	3.2	2.96	3.20	3.0	0.003	0.55	0.0	0.04	15.41	0.00	2.048	8.99	0.00	3.6	96.4	0.0	0.46	0.71	0.77	2.28	3.0	0.003	0.62	0.0	0.04	17.28	0.01	1.905	12.90	0.19	5.1	94.9	0.0	-0.34	0.98	0.75	0.84	2.57	9825	1220	4	0	8	0	0	logfile
✔	7ADP	11733	2022-07-04	2020-09-15	3.6	4.19	3.66	4.0	0.006	0.79	0.0	0.05	15.26	0.00	1.915	8.07	0.12	1.8	98.2	0.0	-4.91	0.76	0.79	1.62	4.0	0.003	0.75	0.0	0.04	16.67	0.00	2.117	9.93	0.31	9.2	90.8	0.0	-0.94	1.70	0.77	0.81	1.58	15026	1880	10	0	3	0	0	logfile
✔	6PM0	20382	2022-07-04	2019-07-01	3.1	3.53	—	3.3	0.007	1.01	0.0	0.05	9.65	0.01	2.298	5.28	0.00	4.1	95.9	0.0	-4.55	0.78	0.84	4.35	3.3	0.004	0.70	0.0	0.04	14.23	0.01	2.121	10.49	0.60	4.2	95.8	0.0	-0.48	0.71	0.77	0.89	3.96	14080	1730	15	0	20	0	0	logfile
✔	7JR9	22444	2022-07-03	2020-08-11	2.95	3.21	—	3.1	0.008	0.82	0.0	0.05	8.26	0.01	2.235	4.11	0.00	3.1	96.9	0.0	-2.53	0.84	0.89	5.25	3.1	0.003	0.54	0.0	0.04	13.25	0.00	2.181	6.24	1.08	2.8	97.2	0.0	0.45	0.57	0.84	0.91	5.03	10021	1300	7	0	14	0	0	logfile
✘	6ZXH	11521	2022-07-05	2020-07-29	2.7	2.64	2.66	2.7	0.009	1.11	0.0	0.06	16.19	0.01	1.158	3.85	0.45	4.1	95.9	0.0	-2.39	0.79	0.82	3.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	76979	5195	44	1651	135	0	0	logfile
✔	7K3W	22658	2022-07-07	2020-09-14	1.36	1.48	—	1.5	0.005	0.76	0.0	0.04	14.50	0.00	1.934	3.63	0.00	1.8	98.2	0.0	3.35	0.73	0.80	9.05	1.5	0.003	0.65	0.0	0.04	14.77	0.00	2.038	2.97	0.00	1.8	98.2	0.0	4.21	0.17	0.75	0.82	9.20	39086	4128	72	0	382	2680	0	logfile
✔	7LC6	23269	2022-07-05	2021-01-09	3.7	4.12	3.73	3.9	0.010	1.12	0.0	0.06	11.93	0.01	2.211	5.74	1.51	7.4	92.6	0.0	-2.96	0.71	0.73	1.85	3.9	0.005	0.66	0.0	0.04	12.99	0.00	1.848	10.71	0.35	7.6	92.4	0.0	-0.43	2.31	0.73	0.78	1.37	21891	1440	7	0	3	4	11106	logfile
✔	7L06	23095	2022-07-04	2020-12-11	3.3	3.96	—	3.6	0.014	1.64	2.0	0.15	12.57	0.02	1.189	3.61	0.87	3.8	96.2	0.0	-0.59	0.81	0.73	1.86	3.6	0.012	0.98	2.0	0.05	13.93	0.00	1.430	8.78	0.20	4.1	95.9	0.0	-0.53	0.80	0.82	0.75	2.09	71940	4636	28	0	77	0	35068	logfile
✔	7L09	23097	2022-07-07	2020-12-11	3.1	3.71	—	3.5	0.014	1.54	4.0	0.10	11.84	0.01	2.369	1.51	0.76	3.3	96.7	0.0	-0.26	0.77	0.74	2.20	3.5	0.004	0.59	0.0	0.04	13.96	0.00	1.881	20.75	0.24	5.4	94.6	0.0	-0.32	0.83	0.79	0.78	2.34	44124	3776	23	0	70	0	13841	logfile
✔	7L02	23094	2022-07-07	2020-12-10	3.2	3.91	—	3.7	0.014	1.54	4.0	0.10	11.85	0.01	2.370	1.49	0.70	3.3	96.7	0.0	-0.25	0.80	0.74	2.04	3.7	0.005	0.66	0.0	0.05	13.91	0.01	1.871	26.95	0.36	5.8	94.2	0.0	-0.63	0.91	0.82	0.79	2.12	44110	3776	23	0	69	0	13841	logfile
✔	7BGY	12184	2022-07-05	2021-01-09	2.9	3.43	2.99	3.3	0.010	0.97	0.0	0.05	13.84	0.01	1.996	5.31	0.44	7.0	93.0	0.0	-2.73	0.67	0.82	4.00	3.3	0.003	0.56	0.0	0.04	14.96	0.00	1.910	6.16	0.62	5.0	95.0	0.0	0.30	0.46	0.59	0.75	3.28	22119	1450	9	0	4	13	11192	logfile
✔	6PM4	20386	2022-07-04	2019-07-01	4.0	5.19	—	4.0	0.007	0.93	0.0	0.05	10.16	0.01	2.236	7.80	0.00	9.9	90.1	0.0	-4.33	0.76	0.85	—	3.8	0.004	0.82	0.0	0.04	12.97	0.00	2.132	23.64	0.33	7.4	92.6	0.0	-1.13	1.21	0.77	0.86	—	14055	1735	15	0	15	0	0	logfile
✔	7CN1	30413	2022-07-03	2020-07-29	3.7	3.74	—	3.7	0.008	0.78	0.0	0.05	13.72	0.00	2.147	16.07	0.32	10.2	89.8	0.0	-3.65	0.47	0.79	1.71	3.7	0.003	0.71	0.0	0.04	15.20	0.00	2.222	9.51	0.00	5.9	94.1	0.0	0.41	0.58	0.48	0.75	1.44	6290	822	6	0	3	0	0	logfile
✔	7JiC	22344	2022-07-03	2020-07-23	3.8	4.28	3.86	4.1	0.002	0.45	0.0	0.04	9.26	0.00	2.241	5.84	0.00	4.4	95.6	0.0	-1.97	0.68	0.80	2.30	4.1	0.008	1.09	0.0	0.04	14.28	0.00	2.219	11.50	0.17	4.0	96.0	0.0	0.43	2.00	0.68	0.81	2.60	5980	842	4	0	0	0	0	logfile

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