Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JMC	22391	2022-05-17	2020-07-31	2.5	2.76	2.68	2.7	0.010	1.29	0.0	0.06	13.90	0.01	2.249	2.77	0.57	1.6	98.4	0.0	3.40	0.62	0.82	4.76	2.7	0.003	0.48	0.0	0.04	13.42	0.00	2.126	5.15	1.71	1.1	98.9	0.0	3.44	0.68	0.65	0.86	4.05	39828	2304	36	0	144	168	18576	logfile
✔	6KPK	0749	2022-05-13	2019-08-15	2.3	3.44	—	3.0	0.006	0.71	0.0	0.06	12.55	0.00	2.127	4.93	0.37	5.5	94.5	0.0	-3.66	0.84	0.88	4.21	3.2	0.003	0.72	1.0	0.13	14.45	0.00	2.010	5.11	0.62	3.6	96.4	0.0	1.15	0.76	0.84	0.89	4.11	62209	3936	24	0	24	0	31225	logfile
✔	6KQo	0754	2022-05-13	2019-08-18	2.52	3.75	—	3.2	0.019	1.14	0.0	0.07	15.24	0.00	1.883	10.69	0.03	9.4	90.6	0.0	-5.07	0.87	0.85	3.52	3.3	0.005	0.77	1.0	0.12	15.95	0.00	1.796	9.28	0.84	3.7	96.3	0.0	0.25	1.66	0.85	0.85	3.16	63373	3936	24	0	48	0	31225	logfile
✔	6KPH	0746	2022-05-13	2019-08-15	2.41	3.45	—	3.2	0.014	1.01	0.0	0.15	14.01	0.00	1.838	8.27	0.00	8.5	91.5	0.0	-4.25	0.81	0.85	4.19	3.2	0.004	0.73	0.0	0.15	15.62	0.00	1.777	7.89	1.06	4.1	95.9	0.0	0.19	0.81	0.80	0.86	4.21	62832	3936	24	0	48	0	31212	logfile
✔	6KPE	0743	2022-05-13	2019-08-15	2.83	4.04	—	3.7	0.009	0.82	0.0	0.14	13.07	0.00	2.040	13.53	0.00	10.4	89.6	0.0	-5.24	0.83	0.84	3.18	3.5	0.004	0.83	0.0	0.16	15.55	0.00	2.043	10.01	1.34	6.0	94.0	0.0	-0.31	1.70	0.83	0.85	3.26	62184	3936	24	0	12	0	31212	logfile
✔	7JLW	22382	2022-05-17	2020-07-30	2.5	2.52	2.49	2.5	0.011	1.39	0.0	0.07	14.27	0.00	2.377	4.26	1.14	1.1	98.9	0.0	0.51	0.62	0.82	4.64	2.5	0.004	0.51	0.0	0.04	15.02	0.00	2.005	5.66	1.42	0.7	99.3	0.0	2.85	0.97	0.67	0.86	4.30	40284	2316	36	0	132	204	18720	logfile
✔	7JM9	22390	2022-05-18	2020-07-31	2.5	2.71	2.65	2.7	0.009	1.47	0.0	0.07	13.53	0.00	2.291	3.08	0.56	1.1	98.9	0.0	0.10	0.62	0.82	5.25	2.7	0.002	0.46	0.0	0.04	13.55	0.00	2.085	6.38	1.27	1.4	98.6	0.0	3.63	0.72	0.64	0.85	4.54	41136	2328	36	0	168	156	18876	logfile
✘	6KPJ	0748	2022-05-13	2019-08-15	2.56	3.82	—	3.3	0.014	0.91	0.0	0.06	13.08	0.00	1.218	8.38	0.00	6.7	93.3	0.0	-4.33	0.85	0.86	3.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62845	3936	24	0	48	0	31225	logfile
✔	6KPi	0747	2022-05-13	2019-08-15	2.43	3.50	—	3.0	0.008	0.67	0.0	0.06	11.99	0.00	1.974	5.19	0.00	7.1	92.9	0.0	-4.39	0.85	0.88	4.58	3.0	0.005	0.78	2.0	0.13	14.39	0.00	1.984	5.77	0.62	3.5	96.5	0.0	1.23	0.72	0.85	0.90	4.27	62209	3936	24	0	24	0	31225	logfile
✔	6KPA	0742	2022-05-13	2019-08-15	2.75	3.85	—	3.3	0.015	0.92	0.0	0.06	14.43	0.00	1.899	6.66	0.00	6.7	93.3	0.0	-4.52	0.87	0.88	3.48	3.3	0.005	0.80	1.0	0.13	16.02	0.00	1.851	5.41	0.19	3.7	96.3	0.0	0.59	0.83	0.87	0.90	3.36	62845	3936	24	0	48	0	31225	logfile
✔	6KQ4	0750	2022-05-13	2019-08-16	2.3	3.29	—	3.0	0.007	0.65	0.0	0.06	13.31	0.00	2.167	3.58	0.37	4.3	95.7	0.0	-3.29	0.85	0.87	4.30	2.9	0.004	0.72	1.0	0.13	15.63	0.00	1.994	4.44	0.47	3.8	96.2	0.0	1.27	0.77	0.84	0.89	4.24	62206	3936	24	0	24	0	31222	logfile
✔	6KQ8	0751	2022-05-13	2019-08-16	3.0	4.05	—	3.7	0.004	0.68	3.0	0.13	12.41	0.00	2.049	6.27	0.00	4.3	95.7	0.0	-4.72	0.87	0.86	3.55	3.7	0.005	0.76	2.0	0.13	13.89	0.00	2.051	7.78	0.34	5.2	94.8	0.0	0.07	1.38	0.87	0.87	3.92	62197	3936	24	0	12	0	31225	logfile
✔	6KoU	0740	2022-05-13	2019-08-13	2.43	3.57	—	3.0	0.004	0.67	1.0	0.13	11.88	0.00	2.006	4.07	0.00	3.0	97.0	0.0	-4.12	0.85	0.88	4.03	3.1	0.004	0.74	2.0	0.13	13.97	0.00	2.071	6.52	0.28	4.0	96.0	0.0	0.82	1.07	0.85	0.89	3.83	62209	3936	24	0	24	0	31225	logfile
✔	6SKo	10230	2022-05-16	2019-08-16	3.4	3.87	—	3.6	0.014	2.11	21.0	0.11	15.68	0.02	1.887	1.14	0.24	6.0	94.0	0.0	-3.05	0.73	0.69	2.26	3.5	0.002	0.57	0.0	0.04	16.36	0.00	1.824	6.68	0.12	3.3	96.7	0.0	0.30	0.94	0.77	0.80	1.87	31553	1955	12	16	10	0	15838	logfile
✔	6TU3	10586	2022-05-18	2020-01-02	2.7	2.82	2.74	2.8	0.006	0.81	0.0	0.05	16.10	0.01	1.264	9.35	8.29	5.8	94.2	0.0	-2.57	0.76	0.83	2.83	2.8	0.006	0.78	0.0	0.05	17.67	0.01	2.068	7.13	5.59	4.9	95.1	0.0	-0.38	0.57	0.77	0.85	2.79	47002	6158	28	0	0	0	0	logfile
✔	6XF5	22161	2022-05-15	2020-06-15	3.45	4.18	3.64	3.8	0.005	0.82	1.0	0.05	12.43	0.01	2.234	4.62	0.53	3.3	96.7	0.0	-0.31	0.84	0.80	1.82	3.8	0.004	0.57	0.0	0.04	13.78	0.01	2.164	9.07	0.04	3.8	96.2	0.0	0.63	1.23	0.86	0.86	2.04	24486	3027	18	0	60	0	0	logfile
✔	6ZoW	11328	2022-05-15	2020-07-07	3.0	3.81	3.10	3.4	0.006	0.71	0.0	0.05	13.52	0.01	1.991	12.34	0.52	2.9	97.1	0.0	-0.91	0.79	0.75	2.92	3.4	0.008	0.95	0.0	0.05	14.94	0.00	1.581	13.35	1.79	3.8	96.2	0.0	-0.11	0.50	0.85	0.86	2.32	23534	2862	35	0	92	4	0	logfile
✔	6XCN	22128	2022-05-16	2020-06-08	3.66	3.89	—	3.7	0.011	0.90	0.0	0.05	14.05	0.00	2.117	15.11	1.08	10.2	89.8	0.0	-4.10	0.78	0.87	2.22	3.7	0.005	0.76	0.0	0.04	15.08	0.00	2.053	9.90	0.07	5.3	94.7	0.0	-1.13	0.99	0.77	0.86	1.63	28662	3636	27	0	60	0	0	logfile
✔	6WNR	21855	2022-05-17	2020-04-23	3.3	3.61	—	3.4	0.005	0.96	1.0	0.06	14.34	0.01	1.869	2.24	1.44	2.8	97.2	0.0	-1.29	0.77	0.85	2.75	3.4	0.003	0.72	0.0	0.04	15.71	0.00	1.932	9.30	0.16	3.1	96.9	0.0	0.76	0.79	0.79	0.88	2.10	36934	4851	28	0	12	0	0	logfile
✔	6VN1	21247	2022-05-16	2020-01-29	2.8	2.97	2.75	3.0	0.006	0.63	0.0	0.05	13.28	0.00	2.123	7.67	0.00	6.3	93.7	0.0	-3.36	0.70	0.80	3.79	3.0	0.006	0.71	0.0	0.05	16.12	0.01	2.156	7.62	2.41	6.8	93.2	0.0	-1.19	0.44	0.74	0.84	3.48	19524	2454	9	0	0	0	0	logfile

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