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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8G0A | 29651 | 2024-03-23 | 2023-01-31 | 2.9 | 3.69 | 2.92 | 3.4 | 0.007 | 0.78 | 3.0 | 0.05 | 14.01 | 0.01 | 1.816 | 7.95 | 1.12 | 2.3 | 97.6 | 0.0 | 0.37 | 0.81 | 0.78 | 3.60 | 3.4 | 0.005 | 0.84 | 0.0 | 0.05 | 15.48 | 0.00 | 1.866 | 16.62 | 2.10 | 2.6 | 97.4 | 0.0 | 1.16 | 0.80 | 0.81 | 0.84 | 2.64 | 35630 | 4861 | 26 | 0 | 10 | 0 | 0 | logfile |
✔ | 3JAD | 6344 | 2024-03-15 | 2015-06-08 | 3.9 | 2.16 | — | 3.8 | 0.008 | 1.33 | 0.0 | 0.06 | 10.08 | 0.00 | 2.250 | 16.87 | 0.43 | 2.7 | 97.3 | 0.0 | -2.13 | 0.68 | 0.72 | 0.33 | 2.6 | 0.004 | 0.78 | 0.0 | 0.04 | 12.70 | 0.00 | 2.181 | 18.39 | 3.28 | 4.5 | 95.5 | 0.0 | 0.03 | 1.24 | 0.70 | 0.78 | 0.54 | 12705 | 1685 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 6ZHX | 11220 | 2024-03-15 | 2020-06-24 | 2.5 | 3.01 | 2.43 | 2.7 | 0.005 | 0.92 | 0.0 | 0.06 | 26.79 | 0.01 | 2.203 | 2.63 | 0.46 | 1.0 | 99.0 | 0.0 | 0.63 | 0.88 | 0.90 | 5.80 | 2.7 | 0.004 | 0.60 | 0.0 | 0.03 | 28.46 | 0.00 | 2.186 | 4.95 | 2.15 | 0.9 | 99.1 | 0.0 | 2.67 | 0.45 | 0.89 | 0.92 | 4.64 | 12313 | 784 | 22 | 290 | 0 | 146 | 0 | logfile |
✘ | 8FHQ | 29099 | 2024-03-11 | 2022-12-14 | 2.81 | 3.05 | 2.83 | 3.1 | 0.008 | 0.82 | 0.0 | 0.05 | 13.69 | 0.01 | 2.303 | 4.02 | 0.65 | 3.5 | 96.5 | 0.0 | -1.14 | 0.62 | 0.86 | 3.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7306 | 950 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7LJF | 23392 | 2024-03-16 | 2021-01-29 | 4.0 | 4.34 | — | 4.2 | 0.003 | 0.62 | 0.0 | 0.04 | 13.98 | 0.00 | 1.987 | 14.43 | 0.41 | 3.4 | 96.6 | 0.0 | 0.00 | 0.83 | 0.80 | — | 4.2 | 0.003 | 0.67 | 0.0 | 0.04 | 15.75 | 0.00 | 1.819 | 18.39 | 2.90 | 4.4 | 95.6 | 0.0 | -0.18 | 0.33 | 0.83 | 0.81 | — | 15742 | 2007 | 9 | 0 | 6 | 0 | 0 | logfile |
✔ | 6VoY | 21301 | 2024-03-17 | 2020-02-01 | 3.7 | 4.09 | — | 4.0 | 0.013 | 1.52 | 30.0 | 0.10 | 24.62 | 0.01 | 1.583 | 35.03 | 0.46 | 2.4 | 97.6 | 0.0 | -6.32 | 0.69 | 0.82 | 2.12 | 4.0 | 0.006 | 1.07 | 1.0 | 0.05 | 24.69 | 0.00 | 1.901 | 22.17 | 5.25 | 12.6 | 87.1 | 0.3 | -2.58 | 1.11 | 0.67 | 0.80 | 1.17 | 17556 | 1724 | 16 | 180 | 6 | 0 | 0 | logfile |
✘ | 7XYA | 33515 | 2024-03-20 | 2022-06-01 | 3.3 | 3.39 | 3.24 | 3.2 | 0.004 | 0.68 | 1.0 | 0.04 | 19.12 | 0.00 | 1.962 | 11.59 | 1.00 | 4.0 | 95.9 | 0.0 | -0.19 | 0.81 | 0.84 | 1.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26550 | 3479 | 11 | 126 | 1 | 0 | 0 | logfile |
✔ | 7PXE | 13700 | 2024-03-21 | 2021-10-08 | 2.38 | 2.90 | 2.41 | 2.7 | 0.005 | 0.73 | 0.0 | 0.04 | 16.77 | 0.00 | 2.151 | 5.31 | 1.94 | 1.0 | 99.0 | 0.0 | 1.17 | 0.79 | 0.87 | 3.74 | 2.7 | 0.002 | 0.45 | 0.0 | 0.04 | 15.78 | 0.00 | 2.194 | 4.91 | 1.94 | 1.4 | 98.6 | 0.0 | 1.72 | 0.32 | 0.79 | 0.89 | 4.38 | 28928 | 3540 | 12 | 0 | 36 | 136 | 0 | logfile |
✔ | 7PQX | 13606 | 2024-03-14 | 2021-09-20 | 3.08 | 3.48 | — | 3.4 | 0.010 | 1.11 | 0.0 | 0.06 | 14.20 | 0.01 | 2.296 | 4.37 | 0.00 | 4.3 | 95.7 | 0.0 | -2.13 | 0.69 | 0.85 | 2.92 | 3.4 | 0.003 | 0.62 | 0.0 | 0.04 | 15.62 | 0.00 | 2.209 | 8.64 | 2.29 | 3.1 | 96.9 | 0.0 | 1.44 | 0.92 | 0.69 | 0.86 | 2.54 | 9032 | 1160 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V5C | 31722 | 2024-03-14 | 2021-08-17 | 3.2 | 3.83 | — | 3.7 | 0.009 | 0.63 | 0.0 | 0.04 | 13.83 | 0.00 | 1.766 | 28.98 | 0.00 | 6.7 | 93.3 | 0.0 | -6.06 | 0.66 | 0.86 | 2.72 | 3.7 | 0.003 | 0.68 | 0.0 | 0.04 | 15.99 | 0.00 | 1.875 | 5.18 | 3.83 | 3.6 | 96.4 | 0.0 | -0.86 | 0.95 | 0.65 | 0.86 | 2.46 | 8916 | 1144 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 8G08 | 29649 | 2024-03-18 | 2023-01-31 | 2.8 | 3.66 | 2.85 | 3.1 | 0.005 | 0.68 | 0.0 | 0.23 | 7.76 | 0.00 | 1.824 | 0.59 | 0.00 | 2.4 | 97.6 | 0.0 | 1.01 | 0.74 | 0.70 | — | 3.3 | 0.004 | 0.68 | 0.0 | 0.02 | 6.39 | 0.00 | 1.808 | 1.98 | 0.00 | 7.2 | 92.8 | 0.0 | 1.27 | 1.85 | 0.81 | 0.79 | — | 19595 | 4859 | 26 | 0 | 10 | 0 | 0 | logfile |
✔ | 7LBE | 23252 | 2024-03-16 | 2021-01-07 | 2.9 | 3.31 | — | 3.2 | 0.003 | 0.51 | 0.0 | 0.04 | 13.44 | 0.00 | 2.200 | 3.47 | 0.00 | 2.8 | 97.2 | 0.0 | 1.20 | 0.69 | 0.82 | 3.12 | 3.2 | 0.005 | 0.64 | 0.0 | 0.05 | 15.53 | 0.00 | 2.137 | 7.73 | 2.18 | 3.8 | 96.2 | 0.0 | 0.63 | 0.43 | 0.70 | 0.85 | 2.90 | 13511 | 1653 | 13 | 0 | 27 | 0 | 0 | logfile |
✔ | 7RE3 | 24432 | 2024-03-24 | 2021-07-12 | 3.33 | 3.71 | — | 3.5 | 0.006 | 1.05 | 6.0 | 0.05 | 17.69 | 0.01 | 2.063 | 10.86 | 6.67 | 6.3 | 93.7 | 0.0 | -1.70 | 0.79 | 0.81 | 1.98 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 15.86 | 0.00 | 1.980 | 11.23 | 1.28 | 5.1 | 94.8 | 0.0 | -0.47 | 1.25 | 0.80 | 0.83 | 1.93 | 43154 | 5106 | 22 | 142 | 34 | 0 | 0 | logfile |
✔ | 7V0X | 26952 | 2024-03-10 | 2022-05-11 | 3.0 | 2.83 | 2.92 | 2.9 | 0.002 | 0.63 | 0.0 | 0.04 | 19.06 | 0.01 | 2.211 | 6.52 | 5.05 | 4.0 | 96.0 | 0.0 | 0.72 | 0.61 | 0.88 | 3.78 | 2.9 | 0.003 | 0.54 | 0.0 | 0.04 | 18.66 | 0.00 | 2.172 | 7.58 | 2.69 | 4.9 | 95.1 | 0.0 | 1.78 | 0.46 | 0.60 | 0.88 | 3.24 | 2818 | 375 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RE2 | 24431 | 2024-03-17 | 2021-07-12 | 3.17 | 3.46 | — | 3.4 | 0.007 | 0.65 | 0.0 | 0.14 | 16.68 | 0.00 | 1.932 | 8.83 | 2.42 | 5.0 | 95.0 | 0.0 | -0.57 | 0.77 | 0.83 | 3.11 | 3.4 | 0.002 | 0.52 | 0.0 | 0.04 | 16.10 | 0.00 | 2.031 | 8.53 | 2.72 | 4.1 | 95.9 | 0.0 | 0.03 | 0.30 | 0.77 | 0.85 | 2.31 | 17096 | 1963 | 9 | 71 | 13 | 0 | 0 | logfile |
✔ | 8FHo | 29097 | 2024-03-16 | 2022-12-14 | 2.95 | 3.32 | 3.23 | 3.2 | 0.009 | 0.94 | 0.0 | 0.05 | 14.52 | 0.01 | 2.207 | 5.59 | 1.24 | 4.6 | 95.4 | 0.0 | -2.02 | 0.66 | 0.87 | 4.05 | 3.2 | 0.002 | 0.53 | 0.0 | 0.04 | 15.99 | 0.00 | 2.155 | 4.60 | 1.65 | 2.6 | 97.4 | 0.0 | 0.25 | 0.94 | 0.60 | 0.86 | 3.29 | 13624 | 1723 | 5 | 0 | 6 | 0 | 0 | logfile |
✔ | 7BES | 12158 | 2024-03-14 | 2020-12-24 | 2.85 | 2.95 | 2.86 | 2.9 | 0.013 | 1.03 | 0.0 | 0.05 | 13.91 | 0.00 | 2.236 | 7.96 | 0.85 | 0.3 | 99.7 | 0.0 | 0.37 | 0.73 | 0.82 | 3.32 | 2.9 | 0.003 | 0.56 | 0.0 | 0.04 | 16.11 | 0.00 | 2.010 | 9.60 | 2.22 | 0.8 | 99.2 | 0.0 | 0.46 | 1.15 | 0.73 | 0.84 | 2.94 | 9446 | 1234 | 12 | 6 | 4 | 0 | 0 | logfile |
✔ | 6KiU | 9998 | 2024-03-21 | 2019-07-20 | 3.2 | 3.29 | — | 3.2 | 0.007 | 0.86 | 0.0 | 0.05 | 22.07 | 0.01 | 2.178 | 3.22 | 0.00 | 6.6 | 93.4 | 0.0 | -3.67 | 0.72 | 0.78 | 2.19 | 3.2 | 0.003 | 0.60 | 0.0 | 0.04 | 23.61 | 0.00 | 2.149 | 9.06 | 1.15 | 5.2 | 94.8 | 0.0 | -1.24 | 1.26 | 0.74 | 0.83 | 1.82 | 20503 | 1839 | 16 | 290 | 1 | 0 | 0 | logfile |
✔ | 6UZ8 | 20953 | 2024-03-19 | 2019-11-14 | 2.84 | 3.21 | — | 3.1 | 0.008 | 1.05 | 4.0 | 0.06 | 14.60 | 0.02 | 2.298 | 2.20 | 0.17 | 4.3 | 95.7 | 0.0 | -3.69 | 0.72 | 0.84 | 3.29 | 3.1 | 0.003 | 1.06 | 0.0 | 0.04 | 15.24 | 0.00 | 2.164 | 4.54 | 1.09 | 3.2 | 96.8 | 0.0 | 1.66 | 0.41 | 0.76 | 0.87 | 2.57 | 23320 | 2936 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 7KMT | 22928 | 2024-03-16 | 2020-11-03 | 3.7 | 4.43 | 3.72 | 3.8 | 0.004 | 0.79 | 0.0 | 0.04 | 15.02 | 0.00 | 2.018 | 7.32 | 0.00 | 6.3 | 93.7 | 0.0 | -0.95 | 0.88 | 0.82 | 1.79 | 3.8 | 0.003 | 0.68 | 0.0 | 0.04 | 16.51 | 0.00 | 2.172 | 12.30 | 1.13 | 4.9 | 95.1 | 0.0 | 0.12 | 0.58 | 0.88 | 0.83 | 1.78 | 14945 | 1838 | 11 | 0 | 2 | 0 | 0 | logfile |