Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6CS0	7578	2023-04-27	2018-03-19	3.8	3.92	3.84	3.8	0.007	1.01	0.0	0.06	9.26	0.01	2.254	6.77	0.04	7.8	92.2	0.0	-4.10	0.73	0.66	1.18	3.8	0.003	0.70	0.0	0.05	13.19	0.00	2.106	14.92	0.11	7.4	92.6	0.0	-2.21	0.79	0.74	0.67	0.72	25909	3205	25	0	66	0	0	logfile
✔	6LR4	0957	2023-04-21	2020-01-15	3.0	3.16	—	3.1	0.011	1.00	0.0	0.06	10.34	0.01	2.289	2.99	0.09	5.8	94.2	0.0	-3.96	0.64	0.84	4.36	3.1	0.005	0.68	0.0	0.04	15.05	0.00	2.185	5.33	1.95	5.3	94.7	0.0	0.02	0.54	0.67	0.87	2.81	10838	1314	13	0	27	0	0	logfile
✔	7W7E	32342	2023-04-20	2021-12-04	3.4	3.51	—	3.9	0.004	0.66	2.0	0.05	14.41	0.00	2.120	8.28	0.32	8.8	91.2	0.0	-1.54	0.68	0.82	2.16	3.9	0.003	0.62	0.0	0.04	16.60	0.00	2.193	9.52	0.22	6.4	93.6	0.0	-0.79	0.99	0.68	0.83	1.83	8524	1090	5	0	1	0	0	logfile
✔	6M02	30028	2023-04-24	2020-02-19	3.2	3.49	3.90	3.9	0.006	0.96	0.0	0.05	16.35	0.01	2.263	6.38	1.64	7.0	93.0	0.0	-6.29	0.60	0.70	1.57	3.9	0.003	0.69	0.0	0.04	17.04	0.00	2.284	10.32	0.52	4.1	95.9	0.0	-1.79	1.20	0.61	0.71	1.40	18935	2345	7	0	0	0	0	logfile
✔	7L2W	23143	2023-04-24	2020-12-17	3.16	3.33	3.09	3.3	0.011	1.03	0.0	0.05	14.26	0.01	2.075	2.37	0.47	5.8	94.2	0.0	0.57	0.64	0.86	2.77	3.3	0.004	0.64	0.0	0.04	15.87	0.00	2.121	7.85	0.16	5.7	94.3	0.0	0.92	3.52	0.64	0.87	2.02	17737	2144	11	0	9	4	0	logfile
✔	7MZD	24090	2023-04-24	2021-05-24	2.9	3.17	2.77	3.2	0.010	0.79	0.0	0.05	10.48	0.01	2.252	1.11	0.59	4.0	96.0	0.0	1.32	0.64	0.88	3.97	3.2	0.004	0.73	0.0	0.04	15.97	0.00	2.137	8.21	1.54	6.1	93.9	0.0	1.41	1.13	0.64	0.90	3.14	17486	2128	12	0	6	4	0	logfile
✔	7TRC	26085	2023-04-23	2022-01-28	3.3	3.10	—	3.3	0.003	0.64	0.0	0.04	14.83	0.00	2.121	8.21	0.21	4.2	95.8	0.0	-1.82	0.66	0.74	2.50	3.2	0.003	0.63	0.0	0.04	16.61	0.00	2.135	9.95	0.21	4.3	95.7	0.0	-1.17	0.51	0.68	0.77	2.09	14747	1599	10	92	0	0	0	logfile
✔	7W6P	32331	2023-04-20	2021-12-02	3.47	3.79	—	9.6	0.004	0.70	0.0	0.04	13.78	0.00	2.196	14.60	0.11	7.0	93.0	0.0	-0.94	0.22	0.11	0.18	8.7	0.003	0.68	0.0	0.04	15.37	0.00	2.199	14.66	0.44	5.7	94.3	0.0	-0.83	1.94	0.31	0.25	0.54	8408	1083	5	0	1	0	0	logfile
✔	7XPZ	33386	2023-04-19	2022-05-06	3.4	3.31	3.34	3.6	0.005	0.73	0.0	0.05	12.26	0.01	2.311	6.57	0.58	5.5	94.5	0.0	-6.77	0.49	0.79	3.43	3.6	0.004	0.68	0.0	0.04	14.09	0.00	2.156	8.10	0.58	5.0	95.0	0.0	-0.80	1.17	0.43	0.76	2.59	3227	402	1	0	0	0	0	logfile
✔	7PSN	13615	2023-04-21	2021-09-23	2.9	3.55	—	3.5	0.009	0.82	0.0	0.04	14.29	0.01	1.923	4.83	0.00	2.7	97.3	0.0	-3.01	0.59	0.78	3.43	3.5	0.003	0.54	0.0	0.04	16.09	0.00	1.998	7.33	1.30	1.4	98.6	0.0	1.16	0.50	0.58	0.79	2.48	9464	1170	4	0	8	0	0	logfile
✔	7WHM	32504	2023-04-21	2021-12-31	2.7	2.86	—	2.8	0.006	0.64	0.0	0.05	13.85	0.00	2.155	6.30	0.00	3.1	96.9	0.0	0.15	0.43	0.87	4.68	2.8	0.003	0.51	0.0	0.04	15.95	0.00	2.260	5.62	0.56	2.3	97.7	0.0	1.45	1.11	0.40	0.84	3.69	9650	1214	1	0	0	0	0	logfile
✔	6UY0	20945	2023-04-21	2019-11-09	3.23	3.39	—	3.4	0.014	1.85	0.0	0.08	13.82	0.00	1.861	1.22	0.00	4.3	95.7	0.0	-2.56	0.47	0.67	1.98	3.4	0.003	0.57	0.0	0.04	15.95	0.00	2.001	5.51	0.19	2.1	97.9	0.0	1.50	1.14	0.64	0.83	1.36	9684	1210	1	0	7	0	0	logfile
✔	7W8S	32358	2023-04-20	2021-12-08	2.85	3.08	—	3.1	0.003	0.60	0.0	0.04	11.01	0.01	2.102	0.87	3.48	3.4	96.6	0.0	-4.03	0.67	0.82	4.11	3.1	0.003	0.61	0.0	0.04	15.38	0.00	2.236	2.22	2.90	2.8	97.2	0.0	-1.27	0.98	0.67	0.83	3.42	6455	788	4	0	3	0	0	logfile
✔	7SWD	25471	2023-04-22	2021-11-19	3.59	3.73	—	3.7	0.006	0.77	0.0	0.05	13.47	0.01	2.124	14.79	0.00	4.5	95.5	0.0	-0.91	0.73	0.79	2.33	3.7	0.003	0.67	0.0	0.04	16.12	0.00	2.199	13.41	0.95	4.3	95.7	0.0	-0.86	1.21	0.73	0.79	2.05	12833	1652	14	0	9	0	0	logfile
✔	6oGY	20059	2023-04-28	2019-04-03	3.4	3.58	—	3.7	0.006	0.79	0.0	0.05	15.76	0.01	2.283	3.56	0.18	3.8	96.1	0.0	-5.60	0.41	0.85	2.69	3.7	0.003	0.60	0.0	0.04	17.37	0.00	2.182	6.30	0.55	3.3	96.7	0.0	-2.25	1.16	0.38	0.85	2.09	74364	9081	13	6	1	0	0	logfile
✔	7VMR	32036	2023-04-25	2021-10-09	3.3	2.92	—	3.1	0.003	0.66	8.0	0.04	14.56	0.00	2.099	10.88	1.87	6.4	93.6	0.0	-0.66	0.63	0.70	1.34	3.0	0.003	0.63	0.0	0.04	16.02	0.00	2.116	11.90	0.34	7.0	93.0	0.0	-0.69	0.53	0.65	0.75	1.54	123548	13608	12	0	3000	0	0	logfile
✔	7T4Q	25685	2023-04-23	2021-12-10	2.9	3.12	—	3.0	0.003	0.62	0.0	0.04	12.96	0.01	2.184	5.12	0.00	3.9	96.1	0.0	-0.62	0.75	0.82	3.45	3.0	0.003	0.71	0.0	0.04	16.18	0.00	2.141	8.93	2.58	3.0	97.0	0.0	0.35	1.31	0.76	0.85	2.90	15473	1946	15	0	6	0	0	logfile
✔	6PBY	20295	2023-04-26	2019-06-14	3.67	3.77	—	3.7	0.008	0.93	0.0	0.06	14.38	0.01	2.248	6.20	0.00	4.3	95.7	0.0	-3.45	0.56	0.56	2.08	3.7	0.003	0.69	0.0	0.04	15.78	0.00	2.159	12.62	0.63	3.0	97.0	0.0	0.63	1.52	0.69	0.77	1.39	23832	3268	8	0	0	0	0	logfile
✔	7RMi	24572	2023-04-20	2021-07-27	3.2	3.78	3.15	3.7	0.004	0.84	0.0	0.05	12.68	0.01	2.296	4.36	0.00	3.4	96.6	0.0	-1.03	0.69	0.72	2.32	3.7	0.003	0.60	0.0	0.04	14.60	0.00	2.196	8.23	0.57	3.1	96.9	0.0	0.53	1.28	0.66	0.78	2.20	7205	960	6	0	1	0	0	logfile
✔	7UPR	26674	2023-04-22	2022-04-16	3.2	3.90	3.36	3.8	0.004	0.80	0.0	0.04	15.49	0.00	2.062	7.72	4.18	7.1	92.9	0.0	-3.02	0.74	0.78	1.45	3.8	0.003	0.67	0.0	0.04	16.60	0.00	1.917	9.71	0.47	8.4	91.6	0.0	0.01	0.53	0.73	0.78	1.26	12780	1678	12	0	19	0	0	logfile

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