Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6CRZ	7577	2021-08-09	2018-03-19	3.3	3.42	3.35	4.5	0.007	0.96	0.0	0.06	9.21	0.01	2.254	6.75	0.04	7.8	92.2	0.0	-4.10	0.39	0.17	0.01	3.4	0.005	0.83	0.0	0.05	13.80	0.01	2.120	14.19	0.40	6.7	93.3	0.0	-1.81	1.83	0.69	0.71	1.02	25909	3205	6	0	66	0	0	logfile
✔	6CRX	7575	2021-08-09	2018-03-19	3.9	4.05	4.09	3.9	0.010	1.07	1.0	0.06	9.43	0.01	2.208	7.00	0.18	6.8	93.2	0.0	-3.73	0.76	0.75	1.86	3.9	0.004	0.69	0.0	0.05	13.14	0.00	2.103	13.84	0.40	8.2	91.8	0.0	-1.33	0.79	0.76	0.76	1.21	26012	3203	6	0	74	0	0	logfile
✔	6U62	20660	2021-08-08	2019-08-29	3.18	3.67	—	3.3	0.004	0.67	0.0	0.04	16.35	0.00	1.957	7.84	3.10	8.1	91.9	0.0	-5.04	0.87	0.86	3.04	3.3	0.009	0.91	1.0	0.04	15.87	0.00	1.965	7.24	0.28	6.1	93.9	0.0	-0.07	0.56	0.88	0.89	2.04	17036	2214	10	1	2	0	0	logfile
✔	6EBK	9024	2021-08-09	2018-08-06	3.3	3.33	—	3.2	0.012	1.26	0.0	0.07	11.77	0.01	2.049	5.78	0.13	3.8	96.2	0.0	-4.63	0.70	0.76	2.95	3.2	0.004	0.82	0.0	0.04	15.10	0.01	2.146	12.10	0.54	2.9	97.1	0.0	-0.35	4.82	0.77	0.88	2.54	22212	2848	20	0	4	128	0	logfile
✔	5TC1	8397	2021-08-08	2016-09-13	3.6	3.60	—	3.6	0.006	0.87	0.0	0.08	18.34	0.01	1.126	33.79	0.27	3.3	96.7	0.0	-3.80	0.19	0.77	4.30	3.6	0.005	0.63	0.0	0.04	17.04	0.00	2.182	7.25	0.45	5.4	94.6	0.0	-0.60	0.72	0.21	0.84	2.91	15393	1352	10	242	0	0	0	logfile
✔	6UQK	20849	2021-08-11	2019-10-20	3.77	4.46	4.11	4.3	0.003	0.53	0.0	0.04	9.91	0.00	2.196	0.22	0.00	5.0	95.0	0.0	-1.84	0.74	0.78	1.71	4.3	0.004	0.61	0.0	0.04	12.78	0.00	2.254	4.42	0.53	7.3	92.7	0.0	1.11	0.65	0.75	0.81	2.01	51567	8032	8	0	188	0	0	logfile
✔	6NZW	0562	2021-08-10	2019-02-14	3.21	3.76	—	3.7	0.011	0.83	0.0	0.04	14.53	0.00	2.145	3.31	3.09	3.6	96.4	0.0	-3.71	0.62	0.75	2.72	3.7	0.006	0.67	0.0	0.04	15.92	0.01	2.057	8.86	0.17	4.0	96.0	0.0	-0.28	0.86	0.61	0.76	2.01	31720	1878	12	0	19	0	15714	logfile
✔	6VRW	21372	2021-08-08	2020-02-10	3.71	4.25	3.76	4.0	0.006	0.83	0.0	0.06	13.56	0.00	2.301	4.29	0.40	7.8	92.2	0.0	-4.95	0.81	0.81	2.33	4.0	0.003	0.57	0.0	0.05	14.84	0.00	2.130	8.23	0.13	6.2	93.8	0.0	-1.96	0.46	0.82	0.83	2.53	14568	1671	12	0	96	0	0	logfile
✘	6UiW	20789	2021-08-09	2019-10-01	2.7	3.36	—	3.1	0.010	0.99	0.0	0.05	14.23	0.01	1.838	6.39	1.10	3.1	96.9	0.0	-3.44	0.71	0.81	4.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23617	3234	22	0	11	0	0	logfile
✔	6CS1	7579	2021-08-09	2018-03-19	4.6	4.79	4.84	6.8	0.005	0.85	0.0	0.05	8.80	0.01	2.229	7.26	0.00	7.2	92.8	0.0	-4.20	0.61	0.31	—	4.6	0.006	0.97	0.0	0.05	11.78	0.01	1.996	31.62	0.07	11.0	88.9	0.1	-2.91	2.36	0.73	0.63	—	25995	3202	6	0	75	0	0	logfile
✔	6JD1	9801	2021-08-09	2019-01-30	3.38	4.55	—	3.9	0.014	0.93	0.0	0.05	15.58	0.00	2.005	6.20	0.00	7.3	92.7	0.0	-4.95	0.85	0.70	1.18	4.0	0.004	0.64	0.0	0.04	16.38	0.00	1.840	16.60	0.47	6.3	93.7	0.0	-1.75	1.61	0.89	0.85	1.92	63427	3953	36	0	60	192	31469	logfile
✔	6o1o	0454	2021-08-08	2019-02-21	3.8	4.00	—	3.6	0.008	1.55	0.0	0.07	15.00	0.01	2.295	4.58	0.00	0.0	0.0	0.0	—	0.72	0.70	—	3.6	0.013	1.80	0.0	0.07	13.90	0.00	1.995	32.55	0.00	0.0	0.0	0.0	—	1.72	0.78	0.76	—	15193	0	14	66	2757	0	0	logfile
✔	6CRV	7573	2021-08-09	2018-03-19	3.2	3.31	3.17	3.3	0.013	1.07	0.0	0.06	8.91	0.01	2.170	4.34	0.26	4.1	95.9	0.0	-3.09	0.74	0.81	3.13	3.3	0.004	0.66	0.0	0.05	13.49	0.00	2.214	6.43	0.18	4.3	95.7	0.0	-0.20	0.74	0.77	0.85	2.80	21036	2643	6	0	39	0	0	logfile
✔	6U9W	20703	2021-08-09	2019-09-09	3.3	3.46	—	3.5	0.011	1.02	0.0	0.08	15.04	0.00	1.975	2.65	0.70	3.7	96.3	0.0	-2.76	0.70	0.81	4.05	3.4	0.003	0.54	0.0	0.04	15.87	0.00	2.095	3.37	0.07	3.4	96.6	0.0	-0.12	1.65	0.73	0.84	3.55	26919	1686	6	3	42	0	12885	logfile
✔	6oGY	20059	2021-08-10	2019-04-03	3.4	3.58	—	3.7	0.006	0.79	0.0	0.05	15.72	0.01	2.283	3.56	0.18	3.8	96.1	0.0	-5.60	0.41	0.85	2.69	3.7	0.004	0.59	0.0	0.04	17.37	0.00	2.179	6.45	0.49	3.3	96.7	0.0	-1.99	1.17	0.38	0.83	2.02	74364	9081	13	6	1	0	0	logfile
✔	6N2D	9327	2021-08-07	2018-11-12	3.3	3.50	3.29	3.6	0.008	1.21	0.0	0.07	11.75	0.01	1.610	14.11	0.71	2.6	97.4	0.0	-2.81	0.61	0.78	1.68	3.6	0.004	0.81	0.0	0.04	16.29	0.01	2.145	18.32	1.13	2.0	98.0	0.0	1.96	0.64	0.63	0.80	1.01	7162	993	13	0	0	0	0	logfile
✔	6PBX	20294	2021-08-09	2019-06-14	4.0	4.12	—	4.0	0.006	0.83	0.0	0.05	14.04	0.01	2.264	6.05	0.00	3.8	96.2	0.0	-3.07	0.68	0.67	—	4.0	0.003	0.70	0.0	0.04	15.11	0.00	2.195	12.76	0.09	4.0	96.0	0.0	1.61	0.76	0.73	0.78	—	23028	3152	8	0	0	0	0	logfile
✔	6S6X	10108	2021-08-12	2019-07-03	3.5	3.64	3.54	3.6	0.004	0.60	0.0	0.45	14.21	0.00	2.111	6.79	0.04	4.2	95.8	0.0	-2.91	0.76	0.85	1.81	3.6	0.002	0.53	0.0	0.04	15.65	0.00	2.157	6.18	0.19	2.8	97.2	0.0	-0.23	1.56	0.77	0.86	1.77	90342	11664	24	0	30	0	0	logfile
✔	6F95	4196	2021-08-08	2017-12-14	3.44	3.56	—	3.5	0.007	0.89	0.0	0.05	12.03	0.01	2.224	5.26	0.44	8.3	91.7	0.0	-4.24	0.65	0.81	2.75	3.5	0.006	0.75	0.0	0.05	15.22	0.00	2.033	10.85	0.70	9.9	90.1	0.0	-1.62	2.56	0.68	0.85	2.72	10635	1335	10	0	10	0	0	logfile
✔	6GVE	0071	2021-08-10	2018-06-20	3.9	4.13	3.97	4.0	0.073	1.80	0.0	0.07	11.90	0.01	1.441	7.01	0.11	4.2	95.8	0.0	-3.72	0.77	0.75	1.99	4.0	0.004	0.79	0.0	0.05	15.91	0.01	2.122	15.77	0.51	3.9	96.1	0.0	-0.70	1.36	0.82	0.82	1.55	33412	4272	24	0	8	0	0	logfile

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