Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PJ6	20353	2021-10-13	2019-06-27	2.2	2.48	—	2.5	0.011	1.07	14.0	0.06	15.16	0.02	1.227	5.23	2.25	5.6	94.4	0.1	-2.65	0.62	0.84	4.58	2.5	0.007	0.78	0.0	0.05	15.83	0.01	1.021	7.99	2.99	5.8	94.2	0.0	-1.06	1.30	0.64	0.86	4.41	154542	3356	67	3016	187	3897	59624	logfile
✔	7oF0	12865	2021-10-07	2021-05-04	2.2	3.01	2.23	2.8	0.005	0.59	0.0	0.04	14.90	0.00	1.851	7.28	0.08	2.7	97.3	0.0	1.19	0.86	0.87	3.67	2.8	0.009	0.73	0.0	0.05	16.33	0.01	1.786	10.82	1.63	3.2	96.8	0.0	0.95	0.48	0.86	0.89	3.49	99476	8446	62	1432	64	0	0	logfile
✔	6WZ5	21970	2021-10-04	2020-05-13	2.2	2.36	—	2.2	0.008	0.69	0.0	0.04	28.82	0.00	2.253	4.68	0.93	2.2	97.8	0.0	0.00	0.75	0.71	2.93	2.2	0.005	0.61	0.0	0.04	29.29	0.00	2.160	5.66	0.93	1.7	98.3	0.0	2.63	0.89	0.87	0.89	3.90	12443	774	10	306	0	0	0	logfile
✔	7P8W	13256	2021-10-04	2021-07-23	2.2	2.34	—	2.3	0.014	1.79	4.0	0.09	14.82	0.01	2.340	1.39	0.75	3.8	96.0	0.2	-1.36	0.85	0.92	6.91	2.3	0.005	0.69	0.0	0.05	15.87	0.01	2.162	2.94	0.46	3.4	96.6	0.0	0.39	1.15	0.85	0.91	6.31	17668	2008	12	0	8	1110	0	logfile
✔	7N06	24101	2021-10-04	2021-05-25	2.2	2.33	—	2.2	0.007	0.63	0.0	0.05	14.55	0.00	2.096	3.28	2.10	2.5	97.4	0.1	-1.80	0.83	0.88	7.00	2.2	0.003	0.53	0.0	0.05	16.52	0.00	2.041	3.62	0.97	1.4	98.6	0.0	0.45	1.12	0.84	0.89	6.24	17223	2082	21	18	0	555	0	logfile
✔	5A1A	2984	2021-10-06	2015-04-29	2.2	2.04	2.58	2.5	0.009	1.21	0.0	0.04	13.14	0.01	0.020	13.89	1.03	3.9	95.5	0.6	-1.86	0.53	0.76	4.20	2.5	0.004	0.76	0.0	0.05	17.54	0.01	1.962	11.69	2.95	3.6	96.3	0.1	-0.66	0.61	0.53	0.79	4.13	33696	4088	12	0	20	776	0	logfile
✔	7DRT	30827	2021-10-03	2020-12-29	2.2	2.32	—	2.3	0.014	1.56	9.0	0.25	13.25	0.01	2.064	5.73	2.38	5.4	94.1	0.5	-0.76	0.39	0.58	3.02	2.3	0.003	0.87	0.0	0.08	17.27	0.00	2.250	11.61	5.45	5.3	94.6	0.1	-0.32	1.14	0.62	0.75	2.77	6849	830	7	0	7	10	0	logfile
✔	6X8M	22094	2021-10-06	2020-06-01	2.2	2.07	2.27	2.2	0.005	0.63	0.0	0.05	13.91	0.01	2.264	5.26	0.82	3.3	96.7	0.0	-1.41	0.74	0.86	6.01	2.1	0.004	0.68	0.0	0.05	16.04	0.00	2.126	4.15	1.03	3.0	97.0	0.0	-0.03	0.63	0.76	0.87	5.75	133440	16800	60	0	0	0	0	logfile
✔	7LXY	23579	2021-10-06	2021-03-05	2.2	2.32	2.27	2.3	0.011	1.21	0.0	0.07	11.01	0.01	2.182	1.39	0.09	1.8	98.2	0.0	0.45	0.75	0.81	4.97	2.3	0.004	0.63	0.0	0.05	14.31	0.00	2.031	5.24	1.39	1.9	98.1	0.0	1.03	0.54	0.77	0.84	4.46	33987	4446	36	0	69	729	0	logfile
✔	6M3X	30073	2021-10-04	2020-03-04	2.24	2.31	—	2.3	0.006	0.81	0.0	0.05	13.95	0.01	2.222	3.45	0.37	3.2	96.8	0.0	-2.65	0.78	0.89	7.35	2.3	0.006	0.74	0.0	0.05	17.16	0.01	2.314	6.11	1.79	3.6	96.4	0.0	0.01	0.42	0.78	0.91	6.76	62387	7440	72	0	24	2243	0	logfile
✘	7M3M	23657	2021-10-26	2021-03-18	2.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	258518	32452	61	0	0	0	0	logfile
✘	7DDE	30652	2021-10-07	2020-10-28	2.26	3.31	—	3.0	0.009	1.14	10.0	0.07	14.34	0.01	2.042	8.37	1.16	5.0	94.9	0.0	-2.84	0.71	0.85	3.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	51171	6300	36	0	48	1911	0	logfile
✔	7RK8	24494	2021-10-20	2021-07-22	2.27	2.34	—	2.3	0.004	0.61	0.0	0.05	14.03	0.00	2.161	3.94	0.00	1.9	98.1	0.0	-0.56	0.76	0.89	5.98	2.3	0.002	0.51	0.0	0.04	15.72	0.00	2.108	3.50	0.97	2.0	98.0	0.0	-0.51	0.33	0.72	0.87	5.64	246720	31020	60	0	0	0	0	logfile
✔	7DYR	30923	2021-10-04	2021-01-22	2.28	2.34	—	2.5	0.008	0.77	0.0	0.05	15.40	0.01	2.205	5.97	3.56	7.2	92.5	0.3	0.10	0.68	0.76	2.43	2.3	0.004	0.65	0.0	0.04	15.93	0.01	2.178	4.94	2.54	6.7	93.1	0.2	1.30	0.55	0.83	0.89	2.29	13326	1791	12	0	3	0	0	logfile
✔	7P13	13154	2021-10-04	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	1.6	0.003	0.48	0.0	0.03	17.14	0.00	2.005	14.47	1.59	2.4	97.6	0.0	5.03	0.51	0.83	0.87	3.65	13727	1743	7	0	0	0	154	logfile
✔	7N8H	24236	2021-10-06	2021-06-14	2.3	2.39	2.37	2.4	0.012	1.25	0.0	0.08	11.01	0.01	2.409	1.59	0.00	1.7	98.3	0.0	0.64	0.73	0.78	4.69	2.4	0.004	0.66	0.0	0.05	14.36	0.00	1.997	4.16	1.26	1.9	98.1	0.0	0.60	0.99	0.76	0.84	4.73	32921	4356	36	0	60	771	0	logfile
✔	7MBQ	23741	2021-10-06	2021-04-01	2.3	3.00	—	2.6	0.019	0.70	0.0	0.09	15.29	0.01	2.246	6.68	0.58	3.9	96.0	0.1	1.80	0.80	0.88	3.90	2.7	0.005	0.60	0.0	0.04	15.36	0.00	2.263	6.81	1.63	3.0	97.0	0.0	2.13	0.38	0.78	0.92	4.06	30616	3984	12	0	20	16	0	logfile
✔	6KQ4	0750	2021-10-04	2019-08-16	2.3	3.29	—	3.0	0.007	0.65	0.0	0.06	13.31	0.00	2.167	3.60	0.37	4.3	95.7	0.0	-3.29	0.85	0.87	4.30	2.9	0.005	0.73	1.0	0.13	15.81	0.00	2.003	4.84	0.19	3.8	96.2	0.0	1.26	0.79	0.86	0.90	4.28	62206	3936	24	0	24	0	31222	logfile
✔	6Li9	0903	2021-10-04	2019-12-10	2.3	2.38	—	2.4	0.007	1.00	0.0	0.07	13.94	0.01	2.265	2.26	0.21	5.0	95.0	0.0	-4.31	0.63	0.75	4.03	2.4	0.003	0.71	0.0	0.05	16.19	0.01	2.131	6.60	1.95	4.3	95.7	0.0	0.18	1.61	0.73	0.85	3.65	17988	2164	22	0	26	246	0	logfile
✔	6SK0	10219	2021-10-03	2019-08-14	2.3	2.29	2.11	2.2	0.008	0.74	0.0	0.05	15.85	0.00	2.202	9.23	0.97	3.3	96.7	0.0	-1.30	0.70	0.83	6.89	2.2	0.005	0.70	0.0	0.05	17.22	0.00	2.142	10.94	0.81	3.9	96.1	0.0	-1.31	1.50	0.79	0.89	6.82	5826	792	3	0	0	0	0	logfile

• ← previous
• Page 3 of 296
• next →