Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JSX	22462	2022-07-07	2020-08-16	2.06	2.05	—	2.1	0.022	1.67	2.0	0.11	11.97	0.01	2.201	6.88	1.26	3.9	96.1	0.0	-1.03	0.74	0.76	5.10	2.0	0.012	1.10	0.0	0.04	14.60	0.00	2.135	9.41	0.80	2.4	97.6	0.0	1.01	0.64	0.82	0.89	6.51	38813	4832	40	0	0	1141	0	logfile
✘	7oY2	13108	2022-07-03	2021-06-23	2.06	2.12	2.05	2.2	0.006	0.92	1.0	0.05	15.87	0.01	1.171	13.44	0.42	0.8	99.2	0.0	1.10	0.77	0.84	5.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7166	858	7	0	7	24	0	logfile
✔	7QKL	14046	2022-07-03	2021-12-17	2.07	2.04	1.98	2.0	0.011	2.37	0.0	0.25	12.79	0.01	2.537	0.71	0.00	3.6	96.4	0.0	-1.75	0.40	0.83	7.75	2.0	0.005	0.71	0.0	0.05	17.30	0.00	2.476	5.23	0.25	2.7	97.3	0.0	-1.26	2.03	0.45	0.91	8.23	3468	456	6	0	0	0	0	logfile
✘	7D1U	30548	2022-07-08	2020-09-15	2.08	1.94	2.04	2.0	0.018	1.83	27.0	0.10	18.50	0.02	1.202	4.10	3.09	2.3	97.5	0.2	-1.36	0.74	0.87	6.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52655	5312	106	0	196	2121	0	logfile
✔	7KJR	22898	2022-07-03	2020-10-26	2.08	2.52	2.15	2.4	0.006	0.84	0.0	0.05	16.31	0.00	2.254	8.14	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	2.4	0.003	0.52	0.0	0.04	16.17	0.00	2.108	10.44	0.74	2.3	97.7	0.0	1.38	0.39	0.63	0.85	4.62	3840	448	8	0	2	122	0	logfile
✔	7Z16	14442	2022-07-07	2022-02-24	2.09	2.57	2.21	2.5	0.006	0.73	0.0	0.05	14.14	0.01	1.956	4.94	1.04	2.1	97.9	0.0	1.45	0.77	0.85	5.34	2.5	0.004	0.57	0.0	0.05	15.13	0.00	1.827	3.31	0.33	2.1	97.9	0.0	1.34	1.98	0.71	0.84	5.18	44690	2882	20	0	10	6	22240	logfile
✔	7RZQ	24774	2022-07-02	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.30	0.0	0.03	15.08	0.00	2.337	5.30	0.36	0.0	100.0	0.0	5.90	0.30	0.81	0.82	1.87	2421	322	6	0	0	0	0	logfile
✔	7TU5	26126	2022-07-07	2022-02-02	2.1	1.97	2.06	1.8	0.009	0.85	6.0	0.06	15.88	0.01	1.910	4.49	1.54	1.4	98.6	0.0	0.64	0.84	0.82	4.27	1.7	0.004	0.52	0.0	0.04	16.37	0.00	1.944	5.78	1.95	1.3	98.6	0.1	1.74	0.43	0.87	0.87	4.95	19656	2574	18	0	6	6	0	logfile
✘	7PBW	13307	2022-07-03	2021-08-02	2.1	1.98	—	2.1	0.009	0.98	0.0	0.05	12.49	0.01	1.319	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9500	873	54	0	81	230	0	logfile
✔	6PXM	20521	2022-07-06	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.60	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	2.3	0.002	0.44	0.0	0.03	17.75	0.00	2.211	4.41	0.14	1.8	98.2	0.0	5.26	1.48	0.79	0.90	3.80	32736	4080	24	0	0	0	0	logfile
✔	7QEW	13943	2022-07-03	2021-12-03	2.1	2.62	—	2.2	0.009	0.60	0.0	0.03	11.35	0.00	2.191	3.73	2.18	3.3	96.7	0.0	1.32	0.78	0.89	4.62	2.3	0.003	0.66	0.0	0.04	14.63	0.00	2.197	5.67	1.29	2.9	97.1	0.0	2.91	1.06	0.79	0.92	3.45	9702	1128	18	0	30	234	0	logfile
✘	7Q4o	13811	2022-07-04	2021-11-01	2.1	2.61	2.24	2.3	0.009	1.49	19.0	0.11	15.61	0.01	1.226	5.11	4.50	2.8	97.2	0.0	-0.66	0.81	0.89	4.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21212	2516	20	48	5	285	0	logfile
✔	7o6E	12738	2022-07-06	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.61	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.004	0.52	0.0	0.03	18.17	0.01	2.172	3.96	0.38	0.6	99.4	0.0	4.21	0.27	0.88	0.89	5.41	35304	4248	48	0	0	1392	0	logfile
✔	6LXV	30007	2022-07-03	2020-02-12	2.1	2.18	—	2.2	0.025	1.66	0.0	0.12	16.07	0.01	2.196	2.46	2.81	3.9	95.9	0.1	-1.79	0.78	0.91	6.69	2.2	0.003	0.58	0.0	0.04	16.46	0.00	2.161	4.32	0.95	2.5	97.5	0.0	0.86	0.92	0.79	0.91	6.15	54924	6448	24	0	16	2967	0	logfile
✘	6XZ7	10655	2022-07-06	2020-02-03	2.1	2.05	2.12	2.1	0.007	0.77	1.0	0.05	14.34	0.01	1.128	6.43	3.26	2.8	96.8	0.4	-2.20	0.41	0.69	5.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	94915	3351	45	3169	179	528	0	logfile
✔	7QET	13940	2022-07-04	2021-12-03	2.1	2.53	2.11	2.3	0.009	0.63	0.0	0.04	13.40	0.00	2.140	1.99	2.38	2.2	97.8	0.0	1.49	0.82	0.90	3.95	2.3	0.004	0.56	0.0	0.04	14.36	0.00	2.189	3.28	1.98	1.2	98.8	0.0	3.48	0.38	0.82	0.92	3.56	19205	2256	36	0	60	305	0	logfile
✔	7PF1	13364	2022-07-07	2021-08-11	2.1	1.83	—	2.0	0.020	1.66	0.0	0.12	14.32	0.01	1.766	1.61	0.65	1.7	98.3	0.0	1.14	0.71	0.75	6.05	1.8	0.003	0.56	0.0	0.04	17.16	0.00	1.943	11.41	0.05	1.7	98.3	0.0	5.04	1.38	0.78	0.82	7.01	41646	4176	72	0	263	7207	0	logfile
✘	6X19	21993	2022-07-03	2020-05-18	2.1	2.20	2.11	2.1	0.007	1.03	6.0	0.08	14.03	0.01	1.224	13.22	1.01	2.7	97.3	0.1	-1.61	0.73	0.84	4.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10277	1258	9	0	1	136	0	logfile
✔	7NK7	12432	2022-07-07	2021-02-17	2.11	2.13	—	2.1	0.006	0.63	0.0	0.05	16.46	0.00	2.121	3.65	0.88	1.8	98.1	0.1	1.07	0.80	0.89	5.91	2.1	0.003	0.55	0.0	0.04	16.33	0.00	1.838	3.54	0.84	1.8	98.1	0.1	1.33	0.22	0.81	0.91	5.74	45644	2954	20	0	11	459	22525	logfile
✘	7SQ9	25380	2022-07-04	2021-11-04	2.11	2.06	—	2.1	0.004	0.63	0.0	0.05	15.57	0.00	1.206	5.68	0.00	2.2	97.8	0.0	1.70	0.70	0.88	5.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15810	1876	16	0	18	16	0	logfile

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