Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FNV	29327	2023-04-28	2022-12-28	2.11	2.24	2.15	2.2	0.007	1.36	12.0	0.07	18.52	0.02	2.014	8.59	3.84	5.7	93.5	0.8	0.03	0.71	0.82	3.84	2.2	0.003	0.62	0.0	0.04	18.06	0.00	2.067	8.88	1.54	5.2	94.2	0.5	1.28	0.48	0.74	0.87	4.18	74928	9237	24	0	12	0	0	logfile
✔	7FEB	31551	2023-04-26	2021-07-19	2.11	2.54	—	2.6	0.004	0.65	0.0	0.05	15.91	0.01	2.211	11.24	0.30	1.5	98.5	0.0	0.07	0.75	0.82	3.11	2.6	0.004	0.65	0.0	0.05	16.54	0.01	2.050	9.13	2.83	1.5	98.5	0.0	0.44	1.95	0.75	0.85	3.22	24075	3024	9	0	0	0	0	logfile
✘	7SQ9	25380	2023-04-23	2021-11-04	2.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15810	1876	16	0	18	16	0	logfile
✔	8D1L	27134	2023-04-23	2022-05-27	2.12	2.70	2.13	2.6	0.005	0.94	0.0	0.04	17.56	0.00	2.222	4.07	1.18	1.6	98.4	0.0	1.75	0.72	0.89	4.78	2.6	0.003	0.53	0.0	0.04	16.68	0.00	2.267	5.13	0.94	1.6	98.4	0.0	1.88	1.70	0.64	0.87	4.34	16306	1880	10	0	46	0	0	logfile
✔	7ZYV	15027	2023-04-24	2022-05-25	2.13	2.84	2.17	2.6	0.007	0.70	0.0	0.05	18.57	0.01	1.927	11.83	2.20	3.9	96.1	0.0	0.99	0.78	0.90	3.60	2.6	0.003	0.59	0.0	0.04	17.78	0.00	2.186	3.85	2.08	3.4	96.6	0.0	1.50	0.39	0.77	0.90	2.95	16452	1946	29	0	32	0	0	logfile
✘	8ENM	28273	2023-04-24	2022-09-30	2.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17722	1999	12	0	8	1693	0	logfile
✔	7RTB	24680	2023-04-21	2021-08-12	2.14	2.32	2.23	2.3	0.003	0.57	0.0	0.04	14.48	0.00	2.277	5.37	0.77	1.6	98.4	0.0	-0.80	0.64	0.69	3.38	2.3	0.003	0.59	0.0	0.04	17.07	0.00	2.260	5.43	2.77	2.7	97.3	0.0	1.12	0.68	0.68	0.82	3.99	8972	1169	7	0	0	1	0	logfile
✔	8A2Z	15109	2023-04-23	2022-06-06	2.15	2.27	2.11	2.2	0.004	0.58	0.0	0.04	11.91	0.00	2.190	1.81	0.00	2.1	97.7	0.3	-1.13	0.74	0.87	6.56	2.2	0.003	0.59	0.0	0.04	15.50	0.00	2.041	4.24	0.52	1.7	98.3	0.0	1.11	1.46	0.74	0.89	5.98	15060	1830	15	0	10	570	0	logfile
✔	7R4X	14317	2023-04-28	2022-02-09	2.15	1.94	—	2.1	0.012	1.13	0.0	0.06	16.98	0.04	1.443	4.90	4.12	3.8	96.2	0.1	-0.66	0.70	0.73	4.07	2.0	0.005	1.06	0.0	0.04	17.40	0.01	1.810	12.10	2.57	3.6	96.4	0.0	0.26	0.92	0.77	0.85	4.42	77937	4792	77	1646	174	4117	0	logfile
✔	7ZZ6	15036	2023-04-20	2022-05-25	2.15	2.39	2.12	2.1	0.006	0.68	0.0	0.04	17.30	0.00	1.385	8.71	3.48	2.9	97.1	0.0	0.64	0.91	0.90	4.87	2.1	0.004	0.61	0.0	0.04	17.09	0.00	1.999	8.27	3.14	3.0	97.0	0.0	0.69	0.24	0.93	0.92	4.82	8257	1017	6	0	6	157	0	logfile
✔	8A2Y	15108	2023-04-23	2022-06-06	2.15	2.21	2.10	2.2	0.005	0.61	0.0	0.05	13.42	0.00	2.177	2.39	0.64	1.9	98.1	0.0	-1.01	0.72	0.87	6.39	2.2	0.003	0.62	0.0	0.05	15.79	0.00	2.140	4.05	0.58	1.1	98.9	0.0	0.97	0.83	0.72	0.89	6.11	15078	1835	15	0	15	528	0	logfile
✔	7PK6	13466	2023-04-24	2021-08-25	2.15	2.27	2.23	2.3	0.005	0.60	0.0	0.05	17.06	0.01	1.864	4.25	2.22	2.0	98.0	0.0	1.43	0.73	0.77	4.80	2.2	0.003	0.55	0.0	0.04	17.46	0.00	2.152	6.42	2.12	2.2	97.8	0.0	1.53	0.87	0.78	0.88	4.85	120580	15100	20	0	0	0	0	logfile
✔	8DLW	27518	2023-04-29	2022-07-08	2.16	3.12	2.26	2.6	0.007	1.05	0.0	0.06	11.12	0.01	2.290	1.95	0.19	2.3	97.7	0.1	0.82	0.87	0.86	4.36	2.6	0.004	0.65	0.0	0.04	13.83	0.00	2.164	6.94	1.06	2.6	97.4	0.0	0.96	2.12	0.88	0.89	4.13	30267	3768	33	0	78	0	0	logfile
✔	8A2R	15104	2023-04-23	2022-06-06	2.17	2.31	2.13	2.2	0.005	0.67	0.0	0.04	13.67	0.00	1.880	2.75	0.65	2.5	97.5	0.0	-1.52	0.72	0.86	5.94	2.2	0.002	0.57	0.0	0.04	16.82	0.00	1.938	3.48	0.90	1.4	98.6	0.0	1.29	1.70	0.73	0.90	5.61	14990	1830	15	0	15	480	0	logfile
✔	6KQK	0753	2023-04-22	2019-08-18	2.17	3.14	—	2.8	0.018	1.17	12.0	0.06	14.73	0.00	1.876	11.30	0.00	7.4	92.6	0.0	-4.38	0.82	0.84	4.45	2.8	0.003	0.73	2.0	0.12	15.49	0.00	1.782	9.69	0.69	4.1	95.9	0.0	0.23	0.79	0.82	0.86	4.20	63373	3936	24	0	48	0	31225	logfile
✔	7UZQ	26916	2023-04-25	2022-05-09	2.17	2.05	2.16	2.1	0.006	0.92	0.0	0.05	16.21	0.01	2.215	4.59	2.27	1.8	98.0	0.2	2.16	0.68	0.87	5.59	2.1	0.004	0.62	0.0	0.04	16.14	0.00	2.133	5.32	1.89	2.0	97.9	0.1	1.79	0.24	0.69	0.88	5.85	20617	1315	10	0	4	235	10214	logfile
✔	7MXY	24076	2023-04-26	2021-05-19	2.18	2.49	—	2.5	0.006	0.66	0.0	0.04	18.00	0.00	2.195	11.50	3.20	3.3	96.7	0.0	1.25	0.50	0.66	2.36	2.4	0.008	0.70	0.0	0.04	18.27	0.00	1.942	15.77	5.36	4.4	95.6	0.0	0.16	1.13	0.53	0.70	2.51	22265	1406	12	0	5	2	11129	logfile
✔	7UTD	26767	2023-04-20	2022-04-26	2.19	3.00	2.25	2.5	0.060	2.36	28.0	1.00	15.03	0.02	1.964	8.43	1.36	2.2	97.7	0.1	-0.03	0.71	0.61	3.58	2.6	0.005	1.93	0.0	0.08	15.64	0.00	1.523	16.31	1.27	2.9	97.1	0.0	0.37	1.33	0.88	0.85	3.78	54200	6908	36	0	64	0	0	logfile
✔	8GVK	32099	2023-04-20	2022-09-15	2.2	2.06	2.20	2.2	0.006	1.29	0.0	0.06	15.35	0.00	2.057	5.53	4.07	3.4	94.0	2.6	-1.54	0.65	0.80	5.76	2.1	0.003	0.77	0.0	0.04	15.42	0.00	2.211	9.90	2.62	4.3	94.9	0.9	-0.94	0.88	0.74	0.85	6.36	3567	476	8	0	0	19	0	logfile
✔	8DBF	27282	2023-04-29	2022-06-14	2.2	2.32	2.21	2.3	0.014	0.99	0.0	0.05	17.66	0.05	1.866	9.33	3.08	4.1	95.9	0.0	0.97	0.74	0.87	5.47	2.3	0.003	1.61	0.0	0.05	17.73	0.00	1.853	5.92	1.93	2.2	97.8	0.0	0.39	1.14	0.75	0.89	5.72	29964	3792	36	0	60	84	0	logfile

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