Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XZ7	10655	2022-04-08	2020-02-03	2.1	2.05	2.12	2.1	0.010	0.81	1.0	0.05	14.53	0.03	1.564	6.31	3.26	2.8	96.8	0.4	-2.20	0.41	0.69	5.50	2.1	0.003	0.72	0.0	0.04	14.76	0.01	1.285	6.10	2.29	2.1	97.8	0.1	0.28	0.92	0.70	0.86	5.26	94915	3351	45	3169	179	528	0	logfile
✔	6PXM	20521	2022-04-08	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.60	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	2.3	0.002	0.44	0.0	0.03	17.75	0.00	2.211	4.41	0.14	1.8	98.2	0.0	5.26	1.48	0.79	0.90	3.80	32736	4080	24	0	0	0	0	logfile
✔	6LXV	30007	2022-04-04	2020-02-12	2.1	2.18	—	2.2	0.025	1.66	0.0	0.12	16.07	0.01	2.196	2.01	2.81	3.9	95.9	0.1	-1.79	0.78	0.91	6.69	2.2	0.003	0.58	0.0	0.04	16.46	0.00	2.161	4.25	0.95	2.5	97.5	0.0	0.86	0.92	0.79	0.91	6.15	54924	6448	24	0	16	2967	0	logfile
✔	7o6E	12738	2022-04-08	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.49	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.004	0.52	0.0	0.03	18.17	0.01	2.172	3.55	0.38	0.6	99.4	0.0	4.21	0.27	0.88	0.89	5.41	35304	4248	48	0	0	1392	0	logfile
✔	7PF1	13364	2022-04-09	2021-08-11	2.1	1.83	—	2.0	0.020	1.66	0.0	0.12	14.32	0.01	1.766	1.25	0.65	1.7	98.3	0.0	1.14	0.71	0.75	6.05	1.8	0.003	0.56	0.0	0.04	17.16	0.00	1.943	10.44	0.05	1.7	98.3	0.0	5.04	1.38	0.78	0.82	7.01	41646	4176	72	0	263	7207	0	logfile
✔	6X19	21993	2022-04-05	2020-05-18	2.1	2.20	2.11	2.1	0.009	1.31	6.0	0.08	14.25	0.01	2.134	12.92	1.01	2.7	97.3	0.1	-1.61	0.73	0.84	4.93	2.2	0.007	1.02	0.0	0.04	16.78	0.00	2.157	6.73	1.01	1.8	98.2	0.0	1.07	1.00	0.72	0.88	4.50	10277	1258	9	0	1	136	0	logfile
✔	7FEB	31551	2022-04-07	2021-07-19	2.11	2.54	—	2.6	0.004	0.65	0.0	0.05	15.91	0.01	2.211	11.24	0.30	1.5	98.5	0.0	0.07	0.75	0.82	3.11	2.6	0.003	0.60	0.0	0.04	16.51	0.00	2.076	8.64	2.76	1.6	98.4	0.0	0.66	1.95	0.75	0.85	3.10	24075	3024	9	0	0	0	0	logfile
✔	7SQ9	25380	2022-04-05	2021-11-04	2.11	2.06	—	2.1	0.016	1.95	0.0	0.41	17.49	0.00	2.223	5.43	0.00	2.2	97.8	0.0	1.70	0.70	0.88	5.56	2.1	0.003	0.83	0.0	0.04	16.74	0.00	2.104	3.74	1.67	2.8	97.2	0.0	2.07	1.22	0.71	0.89	5.40	15810	1876	16	0	18	16	0	logfile
✔	7NK7	12432	2022-04-09	2021-02-17	2.11	2.13	—	2.1	0.006	0.63	0.0	0.05	16.46	0.00	2.121	3.56	0.88	1.8	98.1	0.1	1.07	0.80	0.89	5.91	2.1	0.003	0.55	0.0	0.04	16.33	0.00	1.838	3.47	0.84	1.8	98.1	0.1	1.33	0.22	0.81	0.91	5.74	45644	2954	20	0	11	459	22525	logfile
✔	7JFo	22308	2022-04-09	2020-07-17	2.13	2.12	—	2.1	0.022	1.67	2.0	0.11	12.07	0.01	2.198	6.69	1.23	3.9	96.1	0.0	-0.96	0.72	0.78	6.96	2.1	0.004	0.70	0.0	0.05	14.50	0.01	2.200	7.22	0.77	2.8	97.2	0.0	1.05	0.78	0.70	0.81	5.91	38958	4832	40	0	0	1198	0	logfile
✔	7RTB	24680	2022-04-04	2021-08-12	2.14	2.32	2.23	2.3	0.003	0.57	0.0	0.04	14.48	0.00	2.277	5.37	0.77	1.6	98.4	0.0	-0.80	0.64	0.69	3.38	2.3	0.003	0.59	0.0	0.04	16.87	0.00	2.263	5.14	2.21	2.5	97.5	0.0	1.23	0.67	0.68	0.82	3.94	8972	1169	7	0	0	1	0	logfile
✔	7NKJ	12441	2022-04-09	2021-02-18	2.17	2.16	—	2.1	0.005	0.59	0.0	0.05	16.78	0.00	1.958	2.88	1.05	1.8	98.2	0.1	1.04	0.80	0.89	6.04	2.1	0.004	0.55	0.0	0.04	16.76	0.00	1.766	2.90	1.05	1.6	98.3	0.1	1.18	0.12	0.80	0.90	5.92	45605	2945	20	0	11	516	22478	logfile
✔	6KQK	0753	2022-04-05	2019-08-18	2.17	3.14	—	2.8	0.018	1.15	12.0	0.06	15.47	0.00	1.876	11.30	0.00	7.4	92.6	0.0	-4.38	0.82	0.84	4.45	2.8	0.004	0.73	4.0	0.12	16.21	0.00	1.757	9.64	0.72	4.4	95.6	0.0	0.10	0.80	0.82	0.86	4.10	63373	3936	24	0	48	0	31225	logfile
✔	7MXY	24076	2022-04-06	2021-05-19	2.18	2.49	—	2.5	0.006	0.66	0.0	0.04	18.00	0.00	2.195	11.50	3.20	3.3	96.7	0.0	1.25	0.50	0.66	2.36	2.4	0.007	0.66	0.0	0.04	18.15	0.00	1.950	15.00	4.84	3.7	96.3	0.0	0.55	1.14	0.53	0.70	2.59	22265	1406	12	0	5	2	11129	logfile
✔	6WZ5	21970	2022-04-05	2020-05-13	2.2	2.36	—	2.2	0.008	0.69	0.0	0.04	28.82	0.00	2.253	4.68	0.93	2.2	97.8	0.0	0.00	0.75	0.71	2.93	2.2	0.005	0.62	0.0	0.04	29.34	0.00	2.154	5.62	0.77	1.8	98.2	0.0	2.64	0.89	0.87	0.89	3.82	12443	774	10	306	0	0	0	logfile
✔	7P8W	13256	2022-04-06	2021-07-23	2.2	2.34	—	2.3	0.014	1.79	4.0	0.09	14.82	0.01	2.340	1.39	0.75	3.8	96.0	0.2	-1.36	0.85	0.92	6.91	2.3	0.003	0.62	0.0	0.04	15.61	0.00	2.221	3.19	0.46	2.9	97.1	0.0	0.56	1.15	0.86	0.91	6.13	17668	2008	12	0	8	1110	0	logfile
✔	7LVK	23539	2022-04-14	2021-02-25	2.2	2.31	—	2.4	0.009	0.93	8.0	0.06	14.61	0.02	1.324	2.41	0.81	5.1	94.8	0.2	-2.34	0.64	0.86	5.37	2.4	0.006	0.72	0.0	0.04	15.08	0.01	0.971	5.69	2.00	4.7	95.2	0.1	-0.37	0.97	0.67	0.88	5.15	151436	3222	63	3015	182	2716	58704	logfile
✔	7P6B	13224	2022-04-04	2021-07-15	2.2	1.98	2.14	2.1	0.004	0.75	0.0	0.09	13.80	0.01	2.246	4.21	0.00	3.8	96.2	0.0	-2.60	0.48	0.85	6.24	2.0	0.006	0.70	0.0	0.05	17.13	0.00	2.107	8.18	0.65	4.7	95.3	0.0	-2.26	0.86	0.49	0.88	6.83	4060	540	5	0	0	0	0	logfile
✔	5A1A	2984	2022-04-08	2015-04-29	2.2	2.04	2.58	2.5	0.009	1.21	0.0	0.04	13.14	0.01	0.020	14.13	1.03	3.9	95.5	0.6	-1.86	0.53	0.76	4.20	2.5	0.005	0.78	0.0	0.05	17.68	0.01	1.924	12.32	3.18	3.0	96.9	0.1	-0.70	0.61	0.54	0.79	3.98	33696	4088	12	0	20	776	0	logfile
✔	7ST9	25422	2022-04-09	2021-11-12	2.2	2.95	—	2.8	0.002	0.46	0.0	0.04	16.91	0.00	1.796	2.94	0.71	1.5	98.5	0.0	2.56	0.82	0.78	3.47	2.8	0.009	0.65	0.0	0.04	17.52	0.00	1.698	4.13	1.39	1.3	98.7	0.0	2.04	2.70	0.82	0.86	3.70	46553	2802	25	36	9	423	22930	logfile

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