Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oAE	12775	2022-12-13	2021-04-19	2.0	2.65	—	2.2	0.008	0.53	0.0	0.05	9.44	0.00	2.440	0.99	0.00	2.6	97.4	0.0	0.22	0.77	0.91	6.46	2.2	0.002	0.52	0.0	0.04	15.06	0.00	2.223	5.99	0.38	1.8	98.2	0.0	0.44	2.53	0.78	0.93	6.31	12768	1680	42	0	0	0	0	logfile
✔	7RCV	24407	2022-12-11	2021-07-08	2.01	1.78	—	1.9	0.024	2.35	0.0	0.13	20.29	0.01	1.915	14.12	1.99	2.6	97.4	0.0	0.92	0.78	0.79	5.10	1.9	0.006	0.91	0.0	0.05	19.05	0.01	2.010	12.97	2.06	2.8	97.1	0.0	0.50	0.91	0.81	0.84	5.43	54656	5544	114	0	228	1236	0	logfile
✘	7F4V	31455	2022-12-19	2021-06-21	2.04	1.80	—	2.0	0.025	2.42	0.0	0.08	19.55	0.03	1.203	4.76	2.78	3.0	96.9	0.1	-2.15	0.70	0.83	6.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67641	6336	78	0	453	402	0	logfile
✔	7o6P	12739	2022-12-12	2021-04-12	2.04	2.55	—	2.1	0.008	0.59	0.0	0.05	11.73	0.00	2.140	6.08	0.93	1.8	98.2	0.0	-0.54	0.90	0.88	5.90	2.1	0.004	0.50	0.0	0.04	13.65	0.00	2.240	5.03	0.12	1.9	98.1	0.0	1.99	0.38	0.90	0.92	5.42	8276	1022	8	0	0	268	0	logfile
✘	7oY2	13108	2022-12-18	2021-06-23	2.06	2.12	2.05	2.2	0.007	0.99	1.0	0.05	16.10	0.01	1.205	13.44	0.42	0.8	99.2	0.0	1.10	0.77	0.84	5.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7166	858	7	0	7	24	0	logfile
✔	7JSX	22462	2022-12-20	2020-08-16	2.06	2.05	—	2.1	0.022	1.67	2.0	0.11	11.97	0.01	2.201	6.88	1.26	3.9	96.1	0.0	-1.03	0.74	0.76	5.10	2.0	0.004	0.67	0.0	0.04	14.34	0.00	2.160	8.36	0.80	2.3	97.7	0.0	0.95	0.64	0.83	0.90	6.36	38813	4832	40	0	0	1141	0	logfile
✔	7QKL	14046	2022-12-11	2021-12-17	2.07	2.04	1.98	2.0	0.011	2.37	0.0	0.25	12.79	0.01	2.537	0.71	0.00	3.6	96.4	0.0	-1.75	0.40	0.83	7.75	2.0	0.005	0.71	0.0	0.05	17.30	0.00	2.476	5.23	0.25	2.7	97.3	0.0	-1.26	2.03	0.44	0.91	8.23	3468	456	6	0	0	0	0	logfile
✔	7TFA	25867	2022-12-21	2022-01-06	2.07	2.20	—	2.2	0.003	0.57	0.0	0.04	17.35	0.00	2.014	5.97	2.16	3.6	96.4	0.0	0.31	0.47	0.65	4.55	2.2	0.002	0.52	0.0	0.04	17.26	0.00	1.899	19.27	2.32	4.3	95.7	0.0	0.47	0.59	0.70	0.82	5.42	42636	5424	36	0	24	0	120	logfile
✔	8D1G	27129	2022-12-13	2022-05-27	2.07	2.29	2.10	2.3	0.006	0.69	0.0	0.04	19.81	0.00	2.207	13.54	0.66	1.2	98.8	0.0	1.81	0.74	0.85	5.81	2.3	0.002	0.48	0.0	0.04	16.91	0.00	2.240	6.59	0.59	1.2	98.8	0.0	2.03	0.90	0.71	0.86	5.46	16201	1735	15	0	61	620	0	logfile
✔	7KJR	22898	2022-12-11	2020-10-26	2.08	2.52	2.15	2.4	0.006	0.84	0.0	0.05	16.31	0.00	2.254	8.14	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	2.4	0.003	0.52	0.0	0.04	16.17	0.00	2.108	10.44	0.74	2.3	97.7	0.0	1.38	0.39	0.62	0.85	4.62	3840	448	8	0	2	122	0	logfile
✘	7D1U	30548	2022-12-22	2020-09-15	2.08	1.94	2.04	2.0	0.018	1.83	27.0	0.10	18.50	0.02	1.202	4.10	3.09	2.3	97.5	0.2	-1.36	0.74	0.87	6.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52655	5312	106	0	196	2121	0	logfile
✔	7RZQ	24774	2022-12-11	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.30	0.0	0.03	15.08	0.00	2.337	5.30	0.36	0.0	100.0	0.0	5.90	0.30	0.82	0.83	1.87	2421	322	6	0	0	0	0	logfile
✔	7Z16	14442	2022-12-21	2022-02-24	2.09	2.57	2.21	2.5	0.006	0.73	0.0	0.05	14.14	0.01	1.956	4.94	1.04	2.1	97.9	0.0	1.45	0.77	0.85	5.34	2.5	0.003	0.54	0.0	0.05	15.09	0.00	1.867	3.02	0.50	1.8	98.2	0.0	1.49	1.98	0.71	0.84	5.22	44690	2882	20	0	10	6	22240	logfile
✔	7o6E	12738	2022-12-19	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.61	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.003	0.46	0.0	0.03	18.16	0.00	2.221	3.78	0.29	0.5	99.5	0.0	4.53	0.29	0.88	0.89	5.11	35304	4248	48	0	0	1392	0	logfile
✔	8DQX	27663	2022-12-21	2022-07-20	2.1	2.94	2.16	2.7	0.008	0.68	0.0	0.04	17.17	0.00	1.878	5.03	1.26	2.0	98.0	0.0	1.11	0.79	0.75	4.56	2.7	0.004	0.54	0.0	0.04	16.98	0.00	1.713	4.30	1.04	1.3	98.7	0.0	1.86	0.65	0.80	0.89	4.52	43173	2598	26	27	8	866	21143	logfile
✔	7SC8	25029	2022-12-12	2021-09-27	2.1	2.19	2.13	1.9	0.008	1.12	10.0	0.07	15.00	0.01	2.102	5.31	0.38	1.0	99.0	0.0	2.13	0.82	0.79	4.35	1.9	0.005	0.58	0.0	0.04	16.44	0.00	2.142	8.47	0.98	1.2	98.8	0.0	2.80	0.36	0.86	0.87	4.18	56784	6836	116	0	54	2672	0	logfile
✔	7QEW	13943	2022-12-12	2021-12-03	2.1	2.62	—	2.2	0.009	0.60	0.0	0.03	11.35	0.00	2.191	3.73	2.18	3.3	96.7	0.0	1.32	0.78	0.89	4.62	2.3	0.003	0.66	0.0	0.04	14.63	0.00	2.197	5.67	1.29	2.9	97.1	0.0	2.91	1.06	0.79	0.92	3.45	9702	1128	18	0	30	234	0	logfile
✔	7QUN	14149	2022-12-14	2022-01-18	2.1	2.22	—	2.2	0.005	0.72	0.0	0.05	14.59	0.00	2.230	4.82	0.88	2.1	97.9	0.0	0.29	0.63	0.77	5.98	2.2	0.004	0.80	0.0	0.05	14.98	0.01	2.229	2.20	0.83	2.3	97.7	0.0	0.00	0.24	0.74	0.87	6.39	21094	2773	8	0	4	0	0	logfile
✔	6X19	21993	2022-12-12	2020-05-18	2.1	2.20	2.11	2.1	0.009	1.31	6.0	0.08	14.25	0.01	2.134	13.22	1.01	2.7	97.3	0.1	-1.61	0.73	0.84	4.93	2.2	0.003	0.77	0.0	0.04	16.73	0.00	2.115	6.69	1.28	2.1	97.9	0.0	1.13	1.01	0.72	0.88	4.61	10277	1258	9	0	1	136	0	logfile
✔	7Q4o	13811	2022-12-14	2021-11-01	2.1	2.61	2.24	2.3	0.009	1.49	19.0	0.11	15.76	0.02	2.125	5.12	4.50	2.8	97.2	0.0	-0.66	0.81	0.89	4.17	2.3	0.004	0.70	0.0	0.04	16.54	0.00	2.082	7.76	1.02	1.7	98.3	0.0	0.91	0.72	0.81	0.90	4.11	21212	2516	20	48	5	285	0	logfile

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