Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V7R	31779	2022-05-15	2021-08-21	2.9	3.74	—	3.2	0.003	0.54	0.0	0.04	13.33	0.00	2.163	6.36	0.00	4.5	95.4	0.1	0.06	0.89	0.87	2.64	3.2	0.005	0.59	0.0	0.04	14.60	0.00	2.144	7.28	1.11	4.9	95.0	0.1	0.20	0.27	0.88	0.87	2.29	25362	3095	42	0	84	0	0	logfile
✔	7MHY	23836	2022-05-12	2021-04-16	2.7	2.86	—	2.8	0.115	2.81	1.0	0.18	22.85	0.01	2.160	8.41	0.54	3.3	96.7	0.0	1.01	0.65	0.88	3.72	2.8	0.005	1.07	0.0	0.04	22.75	0.00	2.015	41.30	1.89	3.3	96.7	0.0	1.21	0.27	0.60	0.88	3.30	7904	912	6	0	18	15	0	logfile
✔	7TMQ	25999	2022-05-16	2022-01-19	3.3	3.42	—	3.4	0.004	0.57	2.0	0.04	12.67	0.00	2.026	10.03	0.38	2.7	97.3	0.0	1.28	0.77	0.83	3.33	3.3	0.003	0.53	0.0	0.04	13.93	0.00	1.963	9.43	0.43	2.7	97.3	0.0	1.28	0.27	0.79	0.86	2.85	31642	4736	16	0	2	0	0	logfile
✔	7VLK	32023	2022-05-16	2021-10-04	2.27	2.77	—	2.6	0.002	0.50	0.0	0.04	17.01	0.00	2.195	6.63	2.51	2.0	98.0	0.0	1.38	0.76	0.84	3.20	2.6	0.003	0.56	0.0	0.04	17.13	0.00	2.162	6.68	2.98	2.6	97.4	0.0	1.39	0.27	0.77	0.86	3.26	28774	3698	12	0	0	0	0	logfile
✔	6YPU	10869	2022-05-16	2020-04-16	2.9	2.97	2.78	2.9	0.012	0.99	0.0	0.06	16.54	0.01	1.849	6.04	11.02	9.3	90.5	0.2	-3.96	0.78	0.85	2.54	2.9	0.004	0.59	0.0	0.04	15.86	0.00	1.871	5.18	7.52	6.1	93.9	0.0	-0.91	0.27	0.79	0.86	2.25	33322	1496	17	1040	60	0	0	logfile
✔	7MTS	23996	2022-05-14	2021-05-13	3.2	3.09	—	3.0	0.007	0.77	0.0	0.05	13.10	0.01	2.213	4.55	0.13	3.1	96.9	0.0	0.41	0.83	0.84	2.92	3.0	0.002	0.51	0.0	0.04	14.36	0.00	2.164	3.84	0.13	2.6	97.4	0.0	0.53	0.28	0.83	0.85	2.38	16068	2150	7	0	3	0	0	logfile
✔	7M1Q	23618	2022-05-13	2021-03-14	2.92	3.52	—	3.3	0.003	0.94	0.0	0.04	13.55	0.00	2.049	8.43	0.08	7.6	92.2	0.2	0.03	0.72	0.83	2.79	3.2	0.004	0.77	0.0	0.04	14.22	0.00	1.971	8.43	1.16	7.9	92.0	0.1	0.15	0.28	0.72	0.85	2.58	13780	1911	4	0	16	0	0	logfile
✔	6YN5	10849	2022-05-12	2020-04-10	2.7	2.87	2.79	2.8	0.007	0.80	0.0	0.05	11.66	0.01	2.247	4.03	0.03	1.9	98.1	0.0	-0.33	0.84	0.88	4.96	2.8	0.004	0.55	0.0	0.04	13.63	0.00	2.168	6.38	0.95	1.5	98.5	0.0	0.82	0.28	0.85	0.90	4.35	56994	7110	10	0	0	0	0	logfile
✔	6YT9	10914	2022-05-16	2020-04-24	2.7	2.80	2.65	2.7	0.010	0.81	0.0	0.05	16.25	0.01	1.825	7.54	8.22	8.1	91.9	0.0	-3.30	0.82	0.86	3.10	2.8	0.006	0.62	0.0	0.04	16.03	0.00	1.843	7.64	4.41	6.2	93.8	0.0	-0.19	0.28	0.83	0.88	2.66	33279	1496	17	1040	56	0	0	logfile
✔	7VQQ	32092	2022-05-12	2021-10-20	2.9	2.61	—	3.1	0.009	0.85	0.0	0.05	11.51	0.01	2.233	2.49	0.00	12.4	87.6	0.0	-6.09	0.47	0.86	4.62	3.1	0.004	0.72	0.0	0.04	12.71	0.00	2.270	1.38	0.91	4.1	95.9	0.0	-4.95	0.28	0.48	0.87	4.50	1968	273	3	0	0	0	0	logfile
✔	7NWT	12635	2022-05-22	2021-03-17	2.66	2.63	—	2.6	0.011	0.84	0.0	0.05	14.15	0.02	1.145	4.95	2.95	2.6	97.4	0.0	-2.35	0.85	0.88	4.38	2.7	0.003	0.66	0.0	0.04	15.21	0.01	1.109	7.29	2.74	3.3	96.7	0.0	0.04	0.28	0.86	0.86	3.54	149932	6355	74	4641	439	2	0	logfile
✔	7V7G	31770	2022-05-15	2021-08-21	3.1	3.93	—	3.3	0.003	0.55	0.0	0.05	13.62	0.00	2.168	7.91	0.04	5.6	94.3	0.1	-0.14	0.87	0.85	2.49	3.3	0.003	0.53	0.0	0.05	15.09	0.00	2.198	8.25	0.15	4.7	95.2	0.1	-0.05	0.28	0.87	0.85	2.07	25461	3114	39	0	81	0	0	logfile
✔	7TMP	25998	2022-05-16	2022-01-19	3.3	3.47	—	3.4	0.004	0.54	0.0	0.04	12.38	0.00	1.989	8.96	0.38	3.5	96.5	0.1	1.23	0.78	0.84	3.41	3.4	0.004	0.57	0.0	0.04	14.08	0.00	1.893	8.93	0.25	3.2	96.7	0.0	1.23	0.29	0.80	0.85	3.02	32105	4805	16	0	2	0	0	logfile
✔	7RYH	24740	2022-05-16	2021-08-25	2.43	1.94	—	2.2	0.005	0.63	0.0	0.07	15.90	0.02	1.844	3.81	2.55	2.2	97.7	0.1	1.17	0.77	0.74	2.99	1.6	0.005	0.78	0.0	0.05	16.18	0.01	1.851	5.60	4.94	2.7	97.1	0.1	0.53	0.29	0.78	0.76	3.01	135829	5499	53	4328	8	0	0	logfile
✔	7S8P	24900	2022-05-12	2021-09-18	2.6	2.11	2.62	1.8	0.024	0.85	0.0	0.18	12.77	0.00	2.183	3.24	0.00	5.8	94.2	0.0	-2.01	0.73	0.75	4.73	1.9	0.004	0.80	0.0	0.12	14.88	0.01	2.152	4.45	1.24	4.6	95.4	0.0	-0.76	0.29	0.84	0.84	4.19	8093	1089	5	0	1	0	0	logfile
✔	7VD9	31911	2022-05-14	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	8.15	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.004	0.65	0.0	0.05	17.58	0.01	2.186	8.62	2.68	4.5	95.5	0.0	-0.21	0.29	0.59	0.73	3.61	16426	1991	8	0	8	0	0	logfile
✔	7oP1	13011	2022-05-12	2021-05-28	3.7	3.77	—	3.6	0.004	1.16	0.0	0.04	13.67	0.00	1.848	7.17	0.00	4.7	95.3	0.0	-0.69	0.69	0.87	2.43	3.6	0.003	0.56	0.0	0.04	14.94	0.00	1.685	4.89	0.10	3.6	96.4	0.0	0.53	0.29	0.70	0.85	1.59	8744	1098	1	0	3	0	0	logfile
✔	7VBM	31882	2022-05-13	2021-08-31	3.4	2.78	—	3.1	0.005	0.75	1.0	0.04	28.60	0.01	2.221	6.15	0.18	2.0	98.0	0.0	1.47	0.68	0.78	2.79	3.1	0.003	0.55	0.0	0.03	28.92	0.00	2.190	6.74	0.00	1.8	98.2	0.0	2.72	0.29	0.68	0.80	1.94	10475	677	10	252	0	0	0	logfile
✔	7V7S	31780	2022-05-15	2021-08-21	3.0	3.84	—	3.3	0.003	0.52	0.0	0.04	13.55	0.00	2.197	7.45	0.00	3.9	96.0	0.0	0.13	0.88	0.86	1.94	3.3	0.005	0.57	0.0	0.04	14.94	0.00	2.156	7.85	1.04	4.9	95.0	0.0	0.26	0.29	0.87	0.86	1.94	25255	3088	39	0	81	0	0	logfile
✔	7V7F	31769	2022-05-15	2021-08-21	2.9	3.82	—	3.2	0.004	0.56	0.0	0.05	13.42	0.00	2.061	7.34	0.00	5.1	94.7	0.1	-0.13	0.88	0.86	2.44	3.2	0.005	0.58	0.0	0.05	14.94	0.00	2.108	8.30	1.51	5.7	94.2	0.1	-0.14	0.29	0.89	0.87	2.25	25503	3114	42	0	84	0	0	logfile

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