Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LYA	23590	2022-07-04	2021-03-06	2.91	3.17	2.99	3.2	0.007	0.67	0.0	0.04	27.51	0.00	1.325	3.67	0.16	2.5	97.5	0.0	-1.91	0.70	0.84	2.92	3.2	0.004	0.57	0.0	0.03	28.02	0.00	2.160	4.21	1.09	2.0	98.0	0.0	2.17	0.27	0.74	0.87	2.74	12098	767	10	293	0	0	0	logfile
✔	7TMQ	25999	2022-07-06	2022-01-19	3.3	3.42	—	3.4	0.004	0.57	2.0	0.04	12.67	0.00	2.026	10.03	0.38	2.7	97.3	0.0	1.28	0.77	0.83	3.33	3.3	0.003	0.53	0.0	0.04	13.93	0.00	1.963	9.43	0.43	2.7	97.3	0.0	1.28	0.27	0.79	0.86	2.85	31642	4736	16	0	2	0	0	logfile
✔	7ZGQ	14711	2022-07-04	2022-04-04	2.8	2.47	2.69	2.8	0.003	0.55	0.0	0.04	16.53	0.00	2.162	11.68	3.25	6.7	93.3	0.0	-1.11	0.77	0.85	3.25	2.8	0.009	0.96	1.0	0.05	16.98	0.00	2.153	13.74	3.44	7.1	92.9	0.1	-1.35	0.27	0.77	0.85	3.37	13704	1749	4	0	0	0	0	logfile
✔	6YN5	10849	2022-07-03	2020-04-10	2.7	2.87	2.79	2.8	0.007	0.80	0.0	0.05	11.66	0.01	2.247	4.03	0.03	1.9	98.1	0.0	-0.33	0.84	0.88	4.96	2.8	0.004	0.55	0.0	0.04	13.63	0.00	2.168	6.38	0.95	1.5	98.5	0.0	0.82	0.28	0.85	0.90	4.35	56994	7110	10	0	0	0	0	logfile
✔	7V4H	31711	2022-07-05	2021-08-13	2.9	3.14	—	3.2	0.004	0.59	0.0	0.05	13.65	0.01	2.083	7.42	0.00	3.6	96.4	0.0	-1.11	0.67	0.81	3.76	3.2	0.005	0.68	0.0	0.05	15.46	0.00	2.101	7.28	1.58	2.8	97.2	0.0	-0.28	0.28	0.57	0.80	3.54	27340	3520	10	0	0	0	0	logfile
✔	8D0K	27107	2022-07-06	2022-05-26	4.27	4.58	4.33	4.3	0.002	0.50	0.0	0.04	14.88	0.00	2.188	9.60	0.06	3.7	96.1	0.1	0.70	0.82	0.81	—	4.3	0.003	0.55	0.0	0.04	14.88	0.00	2.170	11.15	0.00	4.9	95.0	0.1	0.61	0.28	0.82	0.80	—	31011	3820	8	20	0	0	0	logfile
✔	7MTS	23996	2022-07-04	2021-05-13	3.2	3.09	—	3.0	0.007	0.77	0.0	0.05	13.10	0.01	2.213	4.55	0.13	3.1	96.9	0.0	0.41	0.83	0.84	2.92	3.0	0.002	0.51	0.0	0.04	14.36	0.00	2.164	3.84	0.13	2.6	97.4	0.0	0.53	0.28	0.83	0.85	2.38	16068	2150	7	0	3	0	0	logfile
✔	6YT9	10914	2022-07-06	2020-04-24	2.7	2.80	2.65	2.7	0.010	0.81	0.0	0.05	16.25	0.01	1.825	7.54	8.22	8.1	91.9	0.0	-3.30	0.82	0.86	3.10	2.8	0.006	0.62	0.0	0.04	16.03	0.00	1.843	7.64	4.41	6.2	93.8	0.0	-0.19	0.28	0.83	0.88	2.66	33279	1496	17	1040	56	0	0	logfile
✔	7UTN	26782	2022-07-03	2022-04-27	2.74	3.33	2.90	3.1	0.007	0.68	0.0	0.04	18.57	0.00	2.080	8.58	0.00	1.8	98.2	0.0	0.01	0.86	0.88	4.65	3.1	0.003	0.55	0.0	0.03	18.54	0.00	2.166	8.21	0.29	1.3	98.7	0.0	0.88	0.28	0.82	0.84	3.73	8003	397	4	228	0	0	0	logfile
✔	7WGB	32482	2022-07-07	2021-12-28	3.5	4.11	—	3.8	0.003	0.60	1.0	0.04	14.22	0.00	2.126	12.98	0.05	6.9	93.1	0.1	-0.98	0.80	0.79	1.70	3.8	0.009	0.90	2.0	0.05	15.78	0.00	2.069	15.71	0.10	7.5	92.4	0.1	-1.07	0.28	0.79	0.75	1.49	36719	4482	31	0	81	0	0	logfile
✔	7VQQ	32092	2022-07-02	2021-10-20	2.9	2.61	—	3.1	0.009	0.85	0.0	0.05	11.51	0.01	2.233	2.49	0.00	12.4	87.6	0.0	-6.09	0.47	0.86	4.62	3.1	0.004	0.72	0.0	0.04	12.71	0.00	2.270	1.38	0.91	4.1	95.9	0.0	-4.95	0.28	0.48	0.87	4.50	1968	273	3	0	0	0	0	logfile
✔	7RQZ	24641	2022-07-06	2021-08-08	3.32	3.07	—	3.3	0.011	0.96	0.0	0.06	17.06	0.00	2.073	6.78	0.00	4.8	95.2	0.0	0.73	0.59	0.73	1.63	3.3	0.003	0.45	0.0	0.03	16.29	0.00	2.107	5.24	0.00	3.8	96.2	0.0	1.03	0.28	0.59	0.75	1.54	32740	2128	8	0	20	0	15608	logfile
✔	7V7G	31770	2022-07-05	2021-08-21	3.1	3.93	—	3.3	0.003	0.55	0.0	0.05	13.62	0.00	2.168	7.91	0.04	5.6	94.3	0.1	-0.14	0.87	0.85	2.49	3.3	0.003	0.53	0.0	0.05	15.09	0.00	2.198	8.25	0.15	4.7	95.2	0.1	-0.05	0.28	0.87	0.85	2.07	25461	3114	39	0	81	0	0	logfile
✔	7WUG	32830	2022-07-04	2022-02-08	3.3	3.43	—	3.4	0.004	0.69	0.0	0.05	13.45	0.00	2.231	3.22	0.11	4.1	95.8	0.0	-0.52	0.79	0.86	2.55	3.4	0.002	0.50	0.0	0.04	14.90	0.00	2.167	5.37	0.22	3.2	96.8	0.0	1.47	0.28	0.78	0.87	1.90	17515	2239	5	0	0	0	0	logfile
✔	7XNo	33321	2022-07-04	2022-04-29	2.54	2.96	2.54	2.8	0.002	0.51	0.0	0.04	12.91	0.00	2.215	5.90	0.12	4.5	95.4	0.1	1.92	0.69	0.85	3.07	2.8	0.004	0.56	0.0	0.04	15.37	0.00	2.207	5.84	1.81	5.2	94.7	0.1	1.75	0.29	0.69	0.87	3.07	15888	2085	15	0	3	0	0	logfile
✔	7V7S	31780	2022-07-05	2021-08-21	3.0	3.84	—	3.3	0.003	0.52	0.0	0.04	13.55	0.00	2.197	7.45	0.00	3.9	96.0	0.0	0.13	0.88	0.86	1.94	3.3	0.005	0.57	0.0	0.04	14.94	0.00	2.156	7.85	1.04	4.9	95.0	0.0	0.26	0.29	0.87	0.86	1.94	25255	3088	39	0	81	0	0	logfile
✔	7MR2	23954	2022-07-04	2021-05-07	4.3	4.72	—	4.5	0.003	0.75	0.0	0.05	14.96	0.01	2.257	5.86	0.00	5.1	94.9	0.0	-1.32	0.90	0.84	—	4.5	0.002	0.57	0.0	0.04	14.89	0.00	2.164	9.94	0.00	4.6	95.4	0.0	0.12	0.29	0.90	0.84	—	16671	2075	3	0	0	0	0	logfile
✔	7MU1	24001	2022-07-06	2021-05-14	3.3	3.26	—	3.2	0.006	0.65	0.0	0.04	13.49	0.00	2.078	13.19	0.43	3.4	96.6	0.0	0.09	0.86	0.88	3.31	3.2	0.004	0.56	0.0	0.04	15.32	0.00	2.284	7.25	0.34	4.7	95.3	0.0	0.93	0.29	0.87	0.91	3.10	132492	16104	61	0	61	0	0	logfile
✔	7MR3	23955	2022-07-05	2021-05-07	3.6	4.01	—	3.9	0.005	0.83	0.0	0.05	16.39	0.01	2.250	5.41	0.00	6.5	93.5	0.0	-1.62	0.83	0.82	1.78	3.9	0.003	0.60	0.0	0.04	17.80	0.00	2.195	9.47	0.21	6.3	93.7	0.0	0.14	0.29	0.83	0.83	1.50	23615	2854	5	40	0	0	0	logfile
✔	7K0P	22606	2022-07-04	2020-09-04	3.1	3.68	—	3.6	0.005	0.71	0.0	0.04	13.66	0.00	2.183	5.54	0.00	2.5	97.5	0.0	0.92	0.69	0.82	3.20	3.6	0.008	0.62	0.0	0.04	14.95	0.00	2.065	5.24	0.16	2.2	97.8	0.0	1.28	0.29	0.70	0.84	2.70	18572	2342	14	0	15	0	0	logfile

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