Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VXP	32186	2023-04-28	2021-11-13	2.7	2.77	—	2.7	0.008	0.82	0.0	0.05	16.01	0.02	2.172	7.73	1.18	3.6	96.4	0.1	0.00	0.76	0.89	3.94	2.7	0.003	0.53	0.0	0.04	16.31	0.00	2.192	6.10	1.45	3.5	96.5	0.1	0.33	0.25	0.75	0.89	3.73	28589	3543	28	0	19	0	0	logfile
✔	7R42	14256	2023-04-26	2022-02-08	2.3	2.33	—	2.3	0.008	0.85	0.0	0.84	17.07	0.00	1.921	3.20	1.23	2.6	97.4	0.0	0.55	0.71	0.90	5.95	2.3	0.007	1.30	0.0	0.25	16.95	0.00	1.973	4.32	1.33	1.7	98.3	0.0	1.64	0.25	0.71	0.91	5.36	69480	8204	114	0	58	1545	0	logfile
✔	8AT6	15635	2023-04-22	2022-08-22	3.7	3.84	3.67	3.7	0.003	0.64	0.0	0.04	16.25	0.00	2.222	9.66	0.00	5.9	93.8	0.3	0.49	0.89	0.85	1.40	3.6	0.002	0.54	0.0	0.04	16.67	0.00	2.194	9.06	0.07	5.4	94.4	0.2	0.92	0.25	0.88	0.85	1.30	12583	1580	6	0	0	0	0	logfile
✔	7XJG	33226	2023-04-22	2022-04-17	2.51	2.02	2.63	1.6	0.005	0.71	0.0	0.05	22.26	0.01	1.962	7.64	3.44	4.1	95.9	0.0	-0.23	0.76	0.76	2.80	1.6	0.004	0.57	0.0	0.04	21.98	0.00	2.113	7.40	4.28	3.9	96.1	0.0	0.70	0.25	0.79	0.79	2.46	13167	1066	12	216	2	0	0	logfile
✔	7V0M	26944	2023-04-20	2022-05-10	2.7	2.46	2.64	2.5	0.003	0.56	0.0	0.04	18.10	0.00	2.240	3.55	1.29	3.3	96.7	0.0	0.52	0.56	0.89	4.90	2.5	0.003	0.49	0.0	0.04	18.18	0.00	2.176	4.37	2.33	3.3	96.7	0.0	1.83	0.25	0.55	0.88	4.09	3724	483	4	0	0	60	0	logfile
✔	8CT2	26978	2023-04-20	2022-05-13	3.1	2.85	3.02	2.9	0.004	0.61	0.0	0.04	12.29	0.00	2.209	4.55	2.03	2.6	97.0	0.4	1.50	0.61	0.86	5.28	2.9	0.003	0.54	0.0	0.04	13.39	0.00	2.217	6.53	0.27	2.8	96.8	0.4	2.03	0.25	0.62	0.86	4.73	7464	988	6	0	4	0	0	logfile
✔	8E92	27953	2023-04-24	2022-08-26	3.96	4.42	3.97	4.3	0.012	1.20	6.0	0.05	14.65	0.01	2.130	12.83	1.03	9.8	90.1	0.1	-2.71	0.72	0.77	1.40	4.3	0.009	1.01	1.0	0.05	14.84	0.01	2.116	13.48	0.19	11.0	88.9	0.0	-2.35	0.25	0.73	0.78	1.52	18011	2580	17	0	31	0	0	logfile
✔	7W1P	32254	2023-04-24	2021-11-19	3.1	3.14	—	3.1	0.007	0.76	1.0	0.04	17.57	0.01	2.111	7.51	0.21	3.8	96.1	0.0	1.03	0.80	0.88	2.94	3.1	0.004	0.60	0.0	0.04	17.00	0.00	2.097	7.89	0.24	4.4	95.6	0.0	0.92	0.25	0.81	0.89	2.89	66868	8140	67	0	40	0	0	logfile
✔	8A8C	15229	2023-04-21	2022-06-22	3.1	3.35	3.12	3.4	0.007	0.68	0.0	0.04	18.09	0.01	2.201	14.74	0.80	5.9	93.9	0.2	-1.68	0.70	0.86	3.26	3.4	0.007	0.68	0.0	0.05	17.16	0.00	2.183	16.63	0.70	6.8	93.0	0.2	-1.98	0.25	0.69	0.87	3.37	9544	1224	3	0	1	0	0	logfile
✔	7LiK	23381	2023-04-27	2021-01-27	2.91	3.15	—	3.2	0.007	0.93	0.0	0.06	14.31	0.01	2.239	2.52	3.02	6.8	93.2	0.0	-1.80	0.79	0.86	3.33	3.2	0.005	0.77	0.0	0.05	16.30	0.01	2.318	1.66	2.51	7.1	92.9	0.0	-1.17	0.25	0.80	0.88	2.68	130800	15900	60	0	60	0	0	logfile
✔	7K5i	22681	2023-04-27	2020-09-16	2.9	3.01	—	3.0	0.004	0.63	0.0	0.04	15.79	0.01	2.031	6.52	0.00	3.7	96.3	0.0	-1.25	0.76	0.82	3.57	3.0	0.006	0.71	0.0	0.05	17.06	0.01	2.061	7.09	2.57	4.4	95.6	0.0	-0.63	0.25	0.78	0.83	3.15	74540	4881	40	1665	4	0	0	logfile
✔	7UZV	26919	2023-04-21	2022-05-09	2.5	2.29	2.44	2.3	0.003	0.58	0.0	0.04	19.05	0.00	1.944	3.69	2.84	1.4	98.3	0.3	1.78	0.62	0.84	3.61	2.3	0.002	0.54	0.0	0.04	19.13	0.00	1.943	5.32	3.25	1.6	98.3	0.2	1.37	0.25	0.61	0.85	3.77	9274	584	4	0	0	63	4592	logfile
✔	7VZ1	32218	2023-04-28	2021-11-15	2.5	2.55	—	2.5	0.008	0.78	0.0	0.05	17.15	0.01	2.201	6.34	1.17	3.3	96.6	0.1	0.11	0.79	0.91	4.60	2.5	0.003	0.54	0.0	0.04	17.22	0.00	2.155	5.08	1.84	3.4	96.6	0.0	0.37	0.25	0.78	0.92	4.45	28737	3488	44	0	17	712	0	logfile
✔	8DCP	27327	2023-04-21	2022-06-17	2.41	2.31	2.35	2.3	0.003	0.64	0.0	0.04	20.07	0.00	2.253	7.28	3.06	4.3	95.7	0.0	0.79	0.68	0.82	3.67	2.3	0.003	0.65	0.0	0.04	20.16	0.00	2.247	9.27	3.40	4.6	95.4	0.0	0.92	0.25	0.70	0.85	3.50	10595	1281	4	0	0	21	0	logfile
✔	8DTM	27705	2023-04-22	2022-07-26	3.5	3.58	3.45	3.6	0.003	0.56	0.0	0.04	16.33	0.00	2.132	7.74	0.41	5.8	94.2	0.0	-0.79	0.71	0.80	2.96	3.6	0.002	0.52	0.0	0.04	16.81	0.00	2.129	7.19	0.55	5.4	94.6	0.0	-0.64	0.25	0.71	0.81	2.59	6498	802	3	0	0	0	0	logfile
✔	7R4F	14302	2023-04-23	2022-02-08	2.4	2.39	—	2.3	0.007	0.79	0.0	0.87	17.28	0.01	1.904	2.94	1.29	2.5	97.5	0.0	0.66	0.73	0.90	5.70	2.4	0.007	1.33	0.0	0.26	17.05	0.00	2.078	4.33	1.41	1.8	98.2	0.0	1.64	0.26	0.74	0.91	5.08	65494	7788	114	0	44	1415	0	logfile
✔	7VLK	32023	2023-04-28	2021-10-04	2.27	2.77	—	2.6	0.002	0.50	0.0	0.04	17.01	0.00	2.195	6.32	2.51	2.0	98.0	0.0	1.38	0.76	0.84	3.20	2.6	0.003	0.56	0.0	0.04	17.19	0.00	2.164	6.61	3.05	2.5	97.5	0.0	1.53	0.26	0.77	0.86	3.20	28774	3698	12	0	0	0	0	logfile
✔	7WiJ	32531	2023-04-22	2022-01-03	3.17	3.08	3.01	3.2	0.002	0.50	0.0	0.03	14.49	0.00	2.243	4.52	0.00	0.4	99.6	0.0	2.75	0.70	0.85	1.82	3.2	0.003	0.53	0.0	0.03	15.57	0.00	2.262	4.68	0.00	0.8	99.2	0.0	3.40	0.26	0.71	0.87	1.79	12396	1602	6	0	0	0	0	logfile
✔	7Y13	33555	2023-04-19	2022-06-06	3.1	3.20	3.10	3.2	0.005	0.68	0.0	0.04	13.19	0.01	2.195	8.24	0.00	6.1	93.9	0.0	1.88	0.59	0.80	3.01	3.2	0.003	0.56	0.0	0.04	15.52	0.00	2.192	8.24	0.43	5.3	94.7	0.0	2.76	0.26	0.54	0.80	2.48	2199	264	1	0	7	2	0	logfile
✔	7V7o	31776	2023-04-27	2021-08-21	2.9	3.72	—	3.2	0.007	0.69	0.0	0.05	13.84	0.00	2.158	7.07	0.00	5.5	94.4	0.1	-0.05	0.89	0.88	2.42	3.2	0.011	0.79	0.0	0.05	15.17	0.00	2.088	8.57	1.04	5.9	94.0	0.1	-0.19	0.26	0.89	0.88	2.12	25325	3092	41	0	83	0	0	logfile

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