Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7D6X	30595	2021-12-01	2020-10-02	2.88	3.17	—	3.1	0.032	1.74	4.0	0.41	14.92	0.01	1.988	10.00	0.22	11.7	88.1	0.3	-2.90	0.74	0.88	3.52	3.1	0.013	1.48	0.0	0.06	16.47	0.01	1.789	8.96	2.33	9.8	90.2	0.0	-1.11	0.36	0.74	0.89	3.12	8711	1097	6	0	6	0	0	logfile
✔	7B5N	12041	2021-12-01	2020-12-05	3.6	3.39	3.52	3.7	0.007	0.79	0.0	0.05	15.66	0.00	1.998	13.46	0.09	9.3	90.7	0.0	-1.35	0.78	0.81	1.56	3.6	0.008	1.01	0.0	0.04	17.16	0.01	2.088	11.80	0.09	6.4	93.6	0.0	-0.01	0.36	0.77	0.80	1.08	9965	1229	9	0	10	0	0	logfile
✔	6XEU	22150	2021-12-02	2020-06-13	3.2	3.84	—	3.7	0.008	0.82	4.0	0.06	15.45	0.01	2.387	2.63	2.83	11.3	88.7	0.0	-2.88	0.76	0.88	3.94	3.7	0.002	0.58	0.0	0.04	15.83	0.00	2.299	2.78	0.35	4.7	95.3	0.0	0.13	0.36	0.78	0.90	3.04	10544	1312	8	0	16	0	0	logfile
✔	7RTN	24684	2021-12-01	2021-08-13	3.4	3.47	—	3.5	0.004	0.63	0.0	0.04	14.58	0.00	2.298	6.03	0.00	6.1	93.9	0.0	0.60	0.31	0.74	3.40	3.5	0.002	0.56	0.0	0.04	16.51	0.00	2.269	7.42	0.00	4.3	95.7	0.0	1.39	0.36	0.31	0.78	2.76	6018	810	3	0	0	0	0	logfile
✔	7KLV	22919	2021-12-02	2020-11-01	3.1	3.02	—	3.1	0.002	0.54	0.0	0.04	15.13	0.00	1.974	6.77	0.09	4.1	95.9	0.0	-0.12	0.74	0.85	2.97	3.1	0.005	0.62	0.0	0.04	17.01	0.00	1.886	6.52	0.47	5.0	95.0	0.0	-0.38	0.37	0.77	0.86	2.79	9871	1226	4	0	6	0	0	logfile
✔	7EW2	31345	2021-12-01	2021-05-24	3.1	3.30	—	3.4	0.004	0.77	0.0	0.05	14.04	0.00	2.201	10.55	0.61	1.7	98.3	0.0	-0.25	0.60	0.68	1.56	3.4	0.013	1.17	1.0	0.04	15.99	0.01	2.200	10.43	0.00	3.9	96.1	0.0	0.02	0.37	0.60	0.73	1.68	9001	1149	5	0	1	0	0	logfile
✔	6X13	21987	2021-12-01	2020-05-18	3.66	3.77	—	3.8	0.007	1.04	1.0	0.05	16.27	0.01	2.340	4.80	0.31	6.5	93.5	0.0	-3.73	0.64	0.84	1.86	3.8	0.004	0.71	0.0	0.04	16.03	0.01	2.265	9.45	0.00	4.8	95.2	0.0	1.52	0.37	0.64	0.84	1.86	3136	417	1	0	1	0	0	logfile
✔	7MJS	23883	2021-12-01	2021-04-20	3.03	3.31	3.09	3.2	0.005	0.94	1.0	0.06	14.20	0.01	2.228	8.63	0.00	4.7	95.3	0.0	-3.02	0.63	0.83	3.58	3.2	0.019	1.58	1.0	0.05	15.96	0.00	2.212	10.54	0.34	3.9	96.1	0.0	-0.07	0.37	0.65	0.85	2.97	5536	703	3	0	3	0	0	logfile
✔	7NS4	12560	2021-12-01	2021-03-05	3.9	3.81	3.79	3.8	0.006	0.79	0.0	0.05	14.40	0.00	2.116	9.17	0.00	10.8	89.2	0.0	-1.02	0.75	0.84	2.90	3.8	0.003	0.65	0.0	0.04	15.90	0.00	2.244	8.06	0.34	8.3	91.7	0.0	0.30	0.37	0.74	0.83	2.23	5465	698	4	0	2	0	0	logfile
✔	6WBY	21601	2021-12-01	2020-03-27	3.4	3.73	3.45	3.6	0.010	1.04	0.0	0.06	12.68	0.01	2.042	3.23	0.32	6.3	93.6	0.1	-5.12	0.78	0.87	3.21	3.6	0.003	0.64	0.0	0.04	13.46	0.01	2.237	5.64	0.22	3.9	96.1	0.0	-0.35	0.37	0.77	0.87	2.48	9156	1250	1	0	2	0	0	logfile
✔	7S8o	24899	2021-12-01	2021-09-18	2.58	2.12	2.59	1.9	0.008	0.79	0.0	0.05	13.16	0.00	2.102	3.18	0.00	5.8	94.2	0.0	0.31	0.81	0.80	4.50	1.9	0.008	0.99	0.0	0.04	15.83	0.00	2.222	3.55	1.61	4.2	95.8	0.0	0.97	0.38	0.83	0.83	3.24	8331	1101	6	0	1	0	0	logfile
✔	7KX7	23061	2021-12-01	2020-12-03	3.8	3.89	3.70	3.8	0.006	0.78	0.0	0.05	13.66	0.02	1.953	14.05	0.17	9.4	90.6	0.0	-2.63	0.83	0.83	2.98	3.8	0.004	0.75	0.0	0.04	15.36	0.01	1.960	13.18	0.17	6.9	93.1	0.0	-1.88	0.38	0.83	0.82	2.97	5828	729	3	7	2	0	0	logfile
✔	7JLU	22380	2021-12-01	2020-07-30	3.8	3.27	—	3.8	0.003	0.78	0.0	0.05	16.63	0.00	2.187	11.66	0.21	9.3	90.7	0.0	-1.56	0.74	0.78	1.46	3.8	0.003	0.69	0.0	0.04	17.73	0.00	2.061	10.33	0.21	8.3	91.7	0.0	-1.74	0.39	0.74	0.79	1.82	8592	1079	2	0	1	0	0	logfile
✔	7DDP	30653	2021-12-01	2020-10-29	3.4	2.88	—	3.3	0.003	0.54	0.0	0.04	14.12	0.00	2.100	8.14	0.29	2.0	98.0	0.0	-1.50	0.70	0.77	2.19	3.3	0.005	0.65	0.0	0.04	16.03	0.01	1.991	9.80	0.00	3.2	96.8	0.0	0.59	0.39	0.72	0.80	2.13	6477	791	4	0	6	0	0	logfile
✔	7B5S	12050	2021-12-01	2020-12-07	3.6	3.59	3.45	3.6	0.006	0.78	0.0	0.04	15.48	0.01	1.997	11.05	0.24	8.7	91.3	0.0	-0.49	0.73	0.83	2.15	3.6	0.003	0.62	0.0	0.04	17.35	0.00	2.172	10.92	0.60	7.7	92.3	0.0	0.85	0.39	0.73	0.82	1.06	7671	931	5	0	5	0	0	logfile
✔	7RXD	24729	2021-12-01	2021-08-22	3.6	3.31	—	3.7	0.003	0.56	0.0	0.13	13.88	0.01	2.138	9.35	0.21	2.6	97.4	0.0	0.47	0.69	0.75	2.16	3.7	0.003	0.59	0.0	0.04	15.35	0.01	2.206	9.97	0.52	2.7	97.3	0.0	0.77	0.39	0.70	0.78	1.71	9007	1148	6	0	2	0	0	logfile
✔	7BH9	12187	2021-12-01	2021-01-11	2.9	3.58	2.91	3.4	0.007	0.76	0.0	0.05	13.23	0.00	2.021	5.17	0.33	4.9	95.1	0.0	-3.10	0.85	0.88	3.70	3.4	0.002	0.53	0.0	0.04	15.21	0.00	2.179	3.33	1.00	2.1	97.9	0.0	0.84	0.39	0.81	0.85	2.44	5876	730	3	0	4	0	0	logfile
✔	7KJR	22898	2021-12-01	2020-10-26	2.08	2.52	2.15	2.4	0.007	0.89	0.0	0.05	16.44	0.00	2.254	7.60	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	2.4	0.003	0.52	0.0	0.04	15.79	0.00	2.101	9.36	0.74	2.1	97.9	0.0	1.36	0.39	0.67	0.87	4.69	3840	448	8	0	2	122	0	logfile
✔	6XMU	22264	2021-12-01	2020-06-30	3.3	3.92	3.36	3.6	0.004	0.58	0.0	0.04	11.80	0.00	1.956	6.41	0.00	4.3	95.7	0.0	-2.43	0.72	0.83	2.22	3.7	0.003	0.57	0.0	0.04	13.48	0.00	1.917	5.63	0.23	3.5	96.5	0.0	0.09	0.40	0.73	0.86	1.65	8411	1090	3	0	22	0	0	logfile
✔	7E3B	30978	2021-12-01	2021-02-08	4.2	4.05	—	4.0	0.006	0.81	0.0	0.05	13.26	0.00	2.241	16.63	0.00	8.2	91.8	0.0	-2.04	0.74	0.84	—	4.0	0.004	0.70	0.0	0.05	13.25	0.00	2.242	13.83	0.00	7.0	93.0	0.0	-1.24	0.40	0.74	0.84	—	3299	421	4	0	1	0	0	logfile

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