Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8B3J	15830	2022-12-11	2022-09-16	3.1	3.34	3.18	3.3	0.005	0.63	0.0	0.05	15.71	0.00	2.144	7.61	0.00	7.6	92.4	0.0	-2.49	0.44	0.88	3.25	3.3	0.005	0.63	0.0	0.05	16.25	0.00	2.127	7.16	0.32	8.2	91.8	0.0	-2.31	0.24	0.44	0.88	3.00	5688	718	3	0	0	0	0	logfile
✔	7T4N	25681	2022-12-11	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.6	0.002	0.46	0.0	0.04	16.43	0.00	2.291	6.16	1.94	1.5	98.5	0.0	1.69	0.25	0.66	0.87	3.63	6476	803	2	0	0	0	0	logfile
✔	7VLK	32023	2022-12-16	2021-10-04	2.27	2.77	—	2.6	0.002	0.50	0.0	0.04	17.01	0.00	2.195	6.63	2.51	2.0	98.0	0.0	1.38	0.76	0.84	3.20	2.6	0.002	0.53	0.0	0.04	17.21	0.00	2.176	6.84	3.11	2.3	97.7	0.0	1.49	0.25	0.77	0.86	3.17	28774	3698	12	0	0	0	0	logfile
✔	7V2L	31655	2022-12-11	2021-08-09	3.3	3.14	3.24	3.1	0.008	1.07	1.0	0.10	16.30	0.00	2.214	5.72	0.09	6.7	93.1	0.2	-0.61	0.78	0.87	2.42	3.1	0.005	0.62	0.0	0.04	16.83	0.00	2.077	8.41	0.55	7.0	92.9	0.1	-0.36	0.25	0.79	0.88	2.09	53410	2621	24	1507	2	0	0	logfile
✔	7A7C	11677	2022-12-12	2020-08-27	3.16	3.66	3.23	3.5	0.003	0.54	0.0	0.04	13.51	0.00	2.199	6.79	0.00	4.5	95.5	0.0	-0.97	0.82	0.87	3.57	3.5	0.003	0.52	0.0	0.04	14.67	0.00	2.089	6.63	0.11	3.8	96.2	0.0	0.07	0.25	0.82	0.88	3.20	9387	1226	2	0	1	0	0	logfile
✔	7VXP	32186	2022-12-16	2021-11-13	2.7	2.77	—	2.7	0.008	0.82	0.0	0.05	15.94	0.02	2.172	9.79	1.18	3.6	96.4	0.1	0.00	0.76	0.89	3.94	2.7	0.003	0.53	0.0	0.04	16.21	0.00	2.199	8.23	1.55	3.4	96.5	0.1	0.40	0.25	0.75	0.89	3.75	28589	3543	28	0	19	0	0	logfile
✔	7TTW	26125	2022-12-15	2022-02-02	2.9	2.35	2.83	2.8	0.003	0.54	0.0	0.03	15.04	0.00	2.065	3.80	0.04	4.3	95.7	0.0	-2.03	0.71	0.80	3.36	2.8	0.002	0.55	0.0	0.03	15.88	0.00	2.020	4.41	3.37	4.3	95.7	0.0	-1.64	0.25	0.72	0.85	2.87	80853	2661	27	2801	0	0	0	logfile
✔	7USW	26741	2022-12-13	2022-04-26	3.1	3.48	3.14	3.5	0.004	0.78	0.0	0.04	15.89	0.01	2.254	7.16	0.21	3.1	96.9	0.0	2.17	0.63	0.80	2.13	3.5	0.002	0.48	0.0	0.04	16.03	0.00	2.253	5.38	0.41	3.1	96.9	0.0	2.30	0.25	0.63	0.83	2.06	14322	1676	12	0	68	0	0	logfile
✔	8A8C	15229	2022-12-12	2022-06-22	3.1	3.35	3.12	3.4	0.007	0.68	0.0	0.14	18.00	0.01	2.201	14.90	0.80	5.9	93.9	0.2	-1.68	0.70	0.86	3.26	3.4	0.003	0.70	0.0	0.07	16.94	0.00	2.153	15.22	0.60	6.1	93.7	0.2	-1.90	0.25	0.70	0.86	3.32	9544	1224	3	0	1	0	0	logfile
✔	7P0M	13148	2022-12-15	2021-06-30	2.75	3.51	2.75	2.7	0.002	0.44	0.0	0.04	16.31	0.00	1.800	7.70	1.88	1.7	98.3	0.0	1.65	0.95	0.88	2.52	2.8	0.003	0.51	0.0	0.04	16.53	0.00	1.963	9.50	2.10	1.8	98.2	0.0	1.52	0.25	0.96	0.89	2.20	25185	3185	19	0	45	0	0	logfile
✔	7XJG	33226	2022-12-13	2022-04-17	2.51	2.02	2.63	1.6	0.005	0.71	0.0	0.05	22.26	0.01	1.962	7.72	3.44	4.1	95.9	0.0	-0.23	0.76	0.76	2.80	1.6	0.003	0.57	0.0	0.04	21.98	0.00	2.110	7.64	4.90	4.0	96.0	0.0	0.64	0.25	0.79	0.79	2.59	13167	1066	12	216	2	0	0	logfile
✔	7P7J	13237	2022-12-19	2021-07-19	2.7	2.61	—	2.3	0.005	0.77	0.0	1.47	14.69	0.01	2.212	6.70	1.25	2.4	97.5	0.0	-0.28	0.91	0.90	3.67	2.4	0.012	2.18	0.0	0.45	15.07	0.00	2.097	10.43	1.59	2.2	97.8	0.0	1.34	0.26	0.91	0.89	3.54	37448	4719	24	0	28	0	0	logfile
✔	6PCR	20305	2022-12-14	2019-06-18	2.5	3.04	—	2.9	0.010	0.51	0.0	0.03	12.78	0.02	1.808	2.74	2.36	5.2	94.6	0.2	-3.36	0.72	0.89	4.33	2.9	0.006	0.65	0.0	0.04	13.75	0.01	1.918	6.25	2.49	5.2	94.7	0.1	-1.27	0.26	0.72	0.91	4.45	72166	967	8	3015	1	0	0	logfile
✔	7ZDQ	14666	2022-12-11	2022-03-29	3.2	2.77	3.10	2.9	0.002	0.54	0.0	0.04	15.18	0.00	2.212	6.55	0.15	2.3	97.7	0.0	1.48	0.71	0.81	3.08	3.0	0.003	0.50	0.0	0.04	16.19	0.00	2.212	6.38	0.30	2.4	97.6	0.0	1.36	0.26	0.72	0.84	3.18	6264	763	3	0	3	0	0	logfile
✔	7V7o	31776	2022-12-15	2021-08-21	2.9	3.72	—	3.2	0.007	0.63	0.0	0.05	13.67	0.00	2.158	7.15	0.00	5.5	94.4	0.1	-0.05	0.89	0.88	2.42	3.2	0.009	0.71	0.0	0.05	14.90	0.00	2.097	8.19	0.96	5.8	94.1	0.1	-0.03	0.26	0.89	0.88	2.14	25325	3092	41	0	83	0	0	logfile
✔	7Y12	33554	2022-12-12	2022-06-06	3.1	2.87	3.11	3.0	0.003	0.58	1.0	0.04	15.81	0.00	2.086	10.19	0.22	3.4	96.6	0.0	0.86	0.62	0.78	2.84	3.0	0.003	0.54	1.0	0.04	16.32	0.00	2.103	10.01	0.45	3.0	97.0	0.0	0.89	0.26	0.61	0.78	2.55	8501	1110	6	0	3	0	0	logfile
✔	7Y13	33555	2022-12-11	2022-06-06	3.1	3.20	3.10	3.2	0.005	0.68	0.0	0.04	13.19	0.01	2.195	8.46	0.00	6.1	93.9	0.0	1.88	0.59	0.80	3.01	3.2	0.004	0.58	0.0	0.04	15.64	0.01	2.188	8.24	0.86	5.3	94.7	0.0	2.59	0.26	0.54	0.80	2.60	2199	264	1	0	7	2	0	logfile
✔	7WiJ	32531	2022-12-12	2022-01-03	3.17	3.08	3.01	3.2	0.002	0.50	0.0	0.03	14.49	0.00	2.243	4.92	0.00	0.4	99.6	0.0	2.75	0.70	0.85	1.82	3.2	0.004	0.56	0.0	0.04	15.62	0.00	2.266	4.80	0.08	1.0	99.0	0.0	3.19	0.26	0.71	0.88	1.96	12396	1602	6	0	0	0	0	logfile
✔	8DiM	27440	2022-12-16	2022-06-29	2.62	3.22	2.95	3.2	0.003	0.52	0.0	0.04	16.05	0.00	2.196	3.93	3.52	2.1	97.6	0.3	0.32	0.71	0.84	3.85	3.2	0.005	0.61	0.0	0.05	16.49	0.00	2.097	3.66	5.48	3.0	96.8	0.1	0.25	0.26	0.69	0.87	4.00	16745	2139	18	0	18	18	0	logfile
✔	8AE1	15378	2022-12-14	2022-07-12	3.25	3.42	3.19	3.3	0.002	0.47	0.0	0.04	12.79	0.00	2.165	3.58	0.00	2.7	97.3	0.0	-1.01	0.77	0.87	4.39	3.3	0.004	0.56	0.0	0.05	14.06	0.00	2.163	4.08	0.14	3.6	96.4	0.0	-0.50	0.27	0.77	0.89	3.70	21504	2859	6	0	18	0	0	logfile

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