Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JRG	22445	2021-08-10	2020-08-12	3.2	3.47	3.19	3.3	0.009	0.85	0.0	0.23	14.73	0.00	2.045	10.03	0.09	6.8	93.1	0.1	0.25	0.79	0.88	2.78	3.3	0.003	0.62	0.0	0.04	15.73	0.00	2.107	7.56	0.12	5.4	94.6	0.0	1.18	0.34	0.78	0.89	1.99	32930	3983	30	0	37	0	0	logfile
✔	7K78	22696	2021-08-08	2020-09-22	3.1	3.20	—	3.2	0.004	0.69	0.0	0.04	27.09	0.01	2.149	8.36	0.20	2.7	97.3	0.0	0.24	0.73	0.84	2.54	3.2	0.007	0.85	0.0	0.04	26.72	0.01	2.192	8.13	0.30	2.8	97.2	0.0	1.78	0.34	0.73	0.86	2.36	14125	1198	12	232	0	0	0	logfile
✔	6V93	21115	2021-08-08	2019-12-13	3.1	3.37	—	3.3	0.006	0.74	0.0	0.75	12.61	0.00	2.117	5.76	0.00	7.0	93.0	0.0	-2.84	0.78	0.84	3.32	3.3	0.011	1.47	1.0	0.24	14.58	0.00	2.119	6.30	0.28	7.7	92.2	0.0	-0.39	0.34	0.80	0.86	3.18	18105	2198	14	26	4	220	0	logfile
✔	7KiM	22887	2021-08-10	2020-10-23	3.38	4.28	—	3.9	0.008	0.89	1.0	0.05	18.32	0.01	1.482	7.47	7.44	7.3	92.6	0.1	-2.59	0.88	0.85	1.62	3.9	0.007	0.89	2.0	0.04	18.19	0.00	2.110	15.16	0.03	7.9	92.0	0.1	-0.80	0.34	0.88	0.87	1.24	29573	3572	13	90	4	0	0	logfile
✔	6XEY	22156	2021-08-10	2020-06-14	3.25	3.61	3.07	2.1	0.005	0.81	1.0	0.05	12.58	0.01	2.265	3.59	0.26	5.1	94.8	0.1	-1.87	0.88	0.83	3.34	2.1	0.003	0.57	0.0	0.04	13.63	0.00	2.127	6.89	0.29	4.8	95.1	0.0	-0.44	0.34	0.89	0.85	2.40	28482	3788	24	0	63	0	0	logfile
✔	7M3G	23654	2021-08-08	2021-03-18	2.5	2.29	—	1.8	0.007	1.00	14.0	0.06	16.87	0.01	2.281	2.21	0.93	3.0	97.0	0.0	-2.02	0.84	0.85	3.70	1.8	0.003	0.56	14.0	0.04	17.26	0.01	2.181	3.81	2.22	3.4	96.6	0.0	0.09	0.34	0.85	0.86	3.30	13298	1627	11	0	41	0	0	logfile
✔	6YY0	11001	2021-08-09	2020-05-04	3.23	3.34	3.07	3.3	0.006	0.69	0.0	0.04	15.27	0.00	1.847	8.05	0.00	8.4	91.6	0.0	-0.84	0.72	0.84	2.97	3.3	0.006	0.79	0.0	0.04	16.24	0.00	1.818	6.55	0.16	4.6	95.4	0.0	0.21	0.34	0.73	0.85	2.64	61162	3926	25	0	11	17	30826	logfile
✔	7KCQ	22817	2021-08-08	2020-10-07	3.2	3.31	—	3.3	0.011	0.82	0.0	0.06	15.99	0.00	1.987	7.49	7.09	6.1	93.9	0.0	-4.00	0.77	0.87	4.16	3.3	0.005	0.58	0.0	0.05	15.78	0.00	2.085	8.71	0.47	3.8	96.2	0.0	-0.30	0.34	0.76	0.87	3.59	10332	1388	8	0	8	0	0	logfile
✔	7oJ5	12938	2021-08-10	2021-05-13	2.4	2.43	—	2.4	0.002	0.53	0.0	0.04	16.61	0.00	2.177	1.84	1.95	1.6	98.4	0.0	-0.94	0.76	0.87	3.97	2.4	0.005	0.85	0.0	0.05	17.00	0.00	2.115	3.46	1.35	2.7	97.3	0.0	0.56	0.34	0.78	0.89	4.45	35323	4416	72	0	48	931	0	logfile
✔	7K5K	22682	2021-08-09	2020-09-17	2.66	2.76	2.81	2.7	0.007	0.69	0.0	0.05	15.27	0.00	1.722	6.82	4.06	10.2	89.7	0.0	-3.21	0.79	0.85	4.74	2.7	0.004	0.59	0.0	0.04	15.71	0.00	1.757	6.74	2.42	7.5	92.5	0.0	-0.87	0.35	0.81	0.87	4.13	24224	3270	12	0	18	0	0	logfile
✔	6UZY	20964	2021-08-08	2019-11-15	3.38	3.52	—	3.5	0.010	0.97	7.0	0.07	15.99	0.01	2.265	6.91	0.00	2.6	97.4	0.0	-3.44	0.66	0.82	2.53	3.5	0.003	0.51	0.0	0.04	15.55	0.00	2.295	5.74	0.11	2.6	97.4	0.0	1.81	0.35	0.66	0.83	2.00	16212	1946	14	0	21	0	0	logfile
✔	7D6V	30594	2021-08-07	2020-10-02	2.53	2.74	—	2.7	0.009	1.14	2.0	0.08	14.71	0.01	2.186	9.22	0.00	9.6	90.3	0.1	-0.92	0.76	0.88	4.90	2.7	0.013	1.27	2.0	0.04	16.11	0.01	2.208	7.78	0.99	7.8	92.2	0.1	-0.06	0.35	0.71	0.88	4.14	8793	1104	6	0	7	0	0	logfile
✔	7MXL	24073	2021-08-08	2021-05-19	3.2	3.53	—	3.4	0.004	0.62	0.0	0.04	13.08	0.00	2.106	11.24	0.08	5.7	94.3	0.0	-1.92	0.78	0.85	3.40	3.4	0.003	0.63	0.0	0.04	14.88	0.00	2.116	11.48	0.25	5.6	94.4	0.1	-1.06	0.35	0.79	0.86	3.05	10866	1422	7	0	0	0	0	logfile
✔	7EU7	31308	2021-08-09	2021-05-16	3.5	3.93	—	3.5	0.003	0.62	0.0	0.05	13.10	0.01	2.172	16.25	2.99	5.0	94.8	0.1	-0.02	0.83	0.83	2.68	3.4	0.004	0.54	0.0	0.04	13.55	0.00	2.180	7.53	0.40	6.2	93.7	0.0	0.07	0.35	0.84	0.85	2.53	21773	3134	8	0	25	0	0	logfile
✔	7MR1	23953	2021-08-08	2021-05-07	4.2	4.74	—	4.6	0.003	0.78	0.0	0.05	14.91	0.01	2.237	5.66	0.00	5.5	94.5	0.0	-1.78	0.85	0.84	—	4.6	0.002	0.58	0.0	0.04	14.71	0.00	2.202	10.04	0.00	5.3	94.7	0.0	-0.03	0.35	0.84	0.83	—	18473	2316	3	0	0	0	0	logfile
✔	7MR3	23955	2021-08-09	2021-05-07	3.6	4.01	—	3.9	0.005	0.84	0.0	0.05	16.39	0.01	2.250	5.31	0.00	6.5	93.5	0.0	-1.62	0.83	0.82	1.78	3.9	0.002	0.57	0.0	0.04	17.76	0.00	2.185	8.70	0.33	5.3	94.7	0.0	0.44	0.36	0.83	0.83	1.48	23615	2854	5	40	0	0	0	logfile
✔	7MR0	23952	2021-08-08	2021-05-07	3.7	4.10	—	4.0	0.003	0.81	0.0	0.05	15.13	0.01	2.284	4.08	0.44	5.8	94.2	0.0	-1.82	0.84	0.82	1.66	4.0	0.005	0.82	0.0	0.04	16.36	0.01	2.216	8.90	0.10	5.7	94.3	0.0	-0.28	0.36	0.84	0.82	1.82	19282	2400	3	0	0	0	0	logfile
✔	6ZVK	11459	2021-08-21	2020-07-24	3.49	3.88	—	3.8	0.006	0.85	1.0	0.04	18.19	0.01	1.992	15.91	0.67	10.6	89.2	0.2	-3.43	0.66	0.79	2.06	3.8	0.005	0.77	0.0	0.04	18.36	0.01	1.664	15.24	0.12	10.3	89.6	0.1	-2.30	0.36	0.66	0.79	1.42	228291	11850	91	6218	6	0	0	logfile
✔	6LZ1	30021	2021-08-10	2020-02-17	3.2	3.36	3.57	3.3	0.005	0.61	0.0	0.05	15.47	0.00	2.099	10.73	2.52	7.7	92.3	0.0	-3.40	0.87	0.86	3.56	3.3	0.003	0.57	0.0	0.04	16.27	0.00	2.096	10.12	0.16	6.6	93.4	0.0	-1.36	0.36	0.86	0.86	3.51	34492	4304	8	0	4	0	0	logfile
✔	7CRP	30455	2021-08-09	2020-08-14	3.2	3.29	—	3.3	0.006	0.74	0.0	0.04	27.13	0.01	1.478	6.60	0.96	8.0	91.8	0.1	-5.47	0.73	0.83	3.50	3.3	0.005	0.67	0.0	0.04	27.34	0.01	2.199	5.15	0.12	6.0	94.0	0.0	-3.17	0.36	0.76	0.87	2.80	14833	1002	11	336	4	0	0	logfile

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