Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TSZ	26105	2023-04-25	2022-01-31	4.5	4.77	—	4.6	0.005	0.89	0.0	0.05	11.13	0.01	2.032	6.90	0.00	1.2	98.8	0.0	0.72	0.73	0.70	—	4.6	0.003	0.62	0.0	0.04	12.84	0.00	1.933	11.88	0.00	6.2	93.8	0.0	-1.01	1.09	0.74	0.74	—	19722	1286	6	0	0	0	9670	logfile
✔	5V4S	8632	2023-04-21	2017-03-10	4.2	4.02	—	4.2	0.012	1.56	20.0	0.14	8.80	0.01	2.352	3.29	0.00	6.6	93.1	0.3	-1.95	0.58	0.73	—	4.1	0.003	0.56	0.0	0.04	12.67	0.00	2.165	4.59	0.00	2.4	97.6	0.0	3.09	1.04	0.57	0.72	—	10756	1548	4	0	0	0	0	logfile
✔	7M3F	23653	2023-04-22	2021-03-18	2.8	2.45	—	2.7	0.008	1.01	0.0	0.06	12.33	0.01	2.245	2.64	0.00	5.0	95.0	0.0	-2.56	0.84	0.86	4.26	2.7	0.003	0.57	0.0	0.04	14.96	0.00	2.124	4.04	1.24	3.7	96.2	0.1	-0.33	0.40	0.84	0.87	3.36	13084	1631	7	0	23	0	0	logfile
✔	6UWL	20923	2023-04-20	2019-11-05	3.62	3.73	—	3.7	0.008	1.16	0.0	0.06	16.05	0.01	2.303	6.24	0.00	7.6	92.2	0.3	-4.71	0.67	0.82	1.71	3.7	0.004	0.79	0.0	0.05	15.90	0.00	2.216	15.05	0.64	6.6	93.4	0.0	-0.23	0.56	0.66	0.81	1.61	3029	402	1	0	1	0	0	logfile
✔	6UWF	20922	2023-04-19	2019-11-05	3.08	3.26	—	3.3	0.008	1.08	0.0	0.05	16.40	0.01	2.294	2.14	0.00	3.1	96.9	0.0	-3.86	0.70	0.85	2.48	3.3	0.003	0.57	0.0	0.04	15.31	0.00	2.245	6.57	0.62	3.1	96.9	0.0	1.17	1.10	0.67	0.85	2.62	3178	417	1	0	2	0	0	logfile
✔	6U5o	20651	2023-04-27	2019-08-28	3.7	3.81	—	3.8	0.005	0.78	0.0	0.04	14.70	0.01	2.093	5.81	0.00	0.0	100.0	0.0	-4.22	0.65	0.75	1.93	3.8	0.004	0.65	0.0	0.04	16.90	0.00	1.877	10.11	0.21	8.1	91.9	0.0	-1.12	1.52	0.66	0.79	2.07	26316	1623	5	0	0	0	13339	logfile
✔	6oLK	20115	2023-04-25	2019-04-16	4.0	4.14	—	4.1	0.005	1.04	0.0	0.06	5.09	0.01	2.445	0.20	0.00	2.3	97.7	0.0	-0.75	0.56	0.49	—	4.1	0.005	0.93	0.0	0.05	7.00	0.00	2.045	9.16	0.00	14.0	86.0	0.0	-2.47	1.44	0.64	0.61	—	10323	2094	6	0	0	0	0	logfile
✔	8D64	27216	2023-04-22	2022-06-06	3.14	3.25	3.11	3.2	0.007	0.81	0.0	0.06	13.69	0.01	2.275	7.13	0.00	6.6	93.4	0.0	-3.61	0.72	0.84	3.27	3.2	0.005	0.65	0.0	0.05	15.07	0.00	2.198	6.33	0.58	6.2	93.8	0.0	-0.53	0.37	0.73	0.87	3.23	12545	1540	10	0	0	0	0	logfile
✔	6W17	21502	2023-04-28	2020-03-03	3.9	3.99	3.93	3.9	0.003	0.59	0.0	0.04	12.66	0.00	1.894	5.87	0.00	4.9	95.1	0.0	-3.15	0.87	0.82	1.39	3.9	0.003	0.73	0.0	0.04	15.33	0.00	1.949	11.65	0.28	5.8	94.2	0.0	-0.82	0.67	0.89	0.85	1.85	27396	3518	23	0	12	0	0	logfile
✔	6MPB	9188	2023-04-21	2018-10-05	3.84	4.03	4.02	4.0	0.005	1.09	0.0	0.06	10.52	0.01	2.338	3.82	0.00	8.9	91.1	0.0	-5.90	0.71	0.78	2.00	4.0	0.003	0.87	0.0	0.04	15.43	0.00	2.137	12.04	0.77	6.9	93.1	0.0	-0.16	1.51	0.72	0.82	2.03	9969	1341	6	0	3	0	0	logfile
✔	6T23	10365	2023-04-23	2019-10-07	3.1	3.12	3.08	3.1	0.050	3.17	0.0	0.23	14.19	0.01	2.141	2.13	0.00	0.8	99.2	0.0	0.95	0.75	0.84	3.46	3.1	0.003	1.52	0.0	0.04	16.72	0.00	1.969	12.50	0.26	1.5	98.5	0.0	1.31	0.73	0.74	0.87	3.00	14910	1855	10	0	20	0	0	logfile
✔	6X12	21986	2023-04-19	2020-05-18	3.52	3.69	—	3.7	0.008	1.08	0.0	0.06	15.87	0.01	2.322	3.01	0.00	2.7	97.3	0.0	-5.29	0.65	0.84	1.43	3.7	0.003	0.67	0.0	0.04	15.88	0.00	2.262	7.77	0.63	2.7	97.3	0.0	0.14	1.20	0.66	0.84	1.26	3059	407	1	0	1	0	0	logfile
✔	7FHL	31586	2023-04-23	2021-07-29	3.1	3.71	—	3.6	0.002	0.55	0.0	0.03	12.50	0.00	2.150	6.83	0.00	1.2	98.8	0.0	1.13	0.70	0.81	1.99	3.6	0.003	0.59	0.0	0.04	14.76	0.00	2.137	8.87	0.08	2.0	98.0	0.0	2.22	0.46	0.69	0.82	1.68	11058	1326	6	0	28	0	0	logfile
✔	8D68	27220	2023-04-22	2022-06-06	3.36	3.13	3.28	3.2	0.008	1.06	0.0	0.06	15.51	0.01	2.212	3.37	0.00	7.0	93.0	0.0	-1.43	0.70	0.84	3.63	3.2	0.005	0.68	0.0	0.05	15.03	0.00	2.171	3.22	0.14	7.1	92.9	0.0	-0.63	0.30	0.70	0.83	2.87	13055	1560	10	0	5	0	0	logfile
✔	6D9H	7835	2023-04-20	2018-04-29	3.6	3.82	—	3.8	0.006	0.93	0.0	0.06	9.32	0.01	2.219	4.18	0.00	3.4	96.6	0.0	-1.52	0.65	0.78	2.88	3.9	0.003	0.55	0.0	0.04	13.79	0.00	2.089	9.43	0.53	4.3	95.7	0.0	0.88	1.23	0.67	0.79	2.35	7023	892	4	0	1	0	0	logfile
✔	6WYK	21967	2023-04-19	2020-05-13	4.0	4.14	—	4.2	0.007	0.77	0.0	0.05	11.98	0.00	2.223	5.97	0.00	3.4	96.6	0.0	-2.28	0.62	0.77	—	4.2	0.004	0.86	0.0	0.05	16.17	0.00	2.173	13.51	0.31	2.9	97.1	0.0	1.58	0.85	0.62	0.78	—	3083	415	1	0	0	0	0	logfile
✔	7XUi	33470	2023-04-29	2022-05-18	3.61	3.69	—	3.7	0.009	0.88	0.0	0.05	15.48	0.01	1.885	9.08	0.00	11.7	88.3	0.0	-2.66	0.82	0.83	2.37	3.7	0.004	0.76	0.0	0.04	16.47	0.00	1.977	12.87	0.27	6.9	93.1	0.0	-0.99	0.51	0.80	0.80	1.54	29610	3473	9	111	3	0	0	logfile
✔	6VK3	21224	2023-04-20	2020-01-18	3.7	3.81	—	3.8	0.006	0.93	0.0	0.06	14.84	0.01	2.013	12.45	0.00	5.1	94.8	0.1	-2.61	0.68	0.80	1.94	3.8	0.003	0.62	0.0	0.04	16.78	0.00	2.205	7.76	0.24	4.6	95.4	0.0	0.36	1.63	0.67	0.79	1.57	7784	954	2	0	7	0	0	logfile
✔	6LHV	0900	2023-04-23	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.59	—	4.4	0.010	1.38	0.0	0.05	6.64	0.00	2.051	53.25	0.00	0.0	0.0	0.0	—	3.58	0.84	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	6D7L	7823	2023-04-21	2018-04-25	4.0	4.10	3.93	3.9	0.004	0.86	0.0	0.05	7.65	0.01	2.273	4.18	0.00	8.5	91.5	0.0	-3.90	0.73	0.72	—	3.9	0.004	0.88	0.0	0.04	15.24	0.00	2.179	17.08	0.98	11.4	88.6	0.0	-0.47	3.01	0.76	0.75	—	9172	1152	4	0	0	0	0	logfile

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