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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7SK9 | 25177 | 2024-03-15 | 2021-10-19 | 3.7 | 4.01 | — | 3.9 | 0.005 | 0.62 | 0.0 | 0.05 | 15.65 | 0.00 | 2.028 | 4.76 | 0.00 | 4.4 | 95.6 | 0.0 | 1.15 | 0.71 | 0.81 | 1.92 | 3.9 | 0.003 | 0.50 | 0.0 | 0.04 | 14.26 | 0.00 | 2.032 | 6.17 | 0.94 | 5.1 | 94.9 | 0.0 | 1.17 | 0.41 | 0.70 | 0.81 | 2.17 | 11261 | 716 | 4 | 0 | 3 | 0 | 5561 | logfile |
✔ | 7JPS | 22421 | 2024-03-17 | 2020-08-09 | 4.4 | 5.22 | — | 3.8 | 0.006 | 1.19 | 1.0 | 0.06 | 16.82 | 0.01 | 2.102 | 4.24 | 0.00 | 3.1 | 96.9 | 0.0 | -2.45 | 0.67 | 0.46 | — | 3.9 | 0.003 | 0.69 | 0.0 | 0.04 | 16.25 | 0.00 | 1.963 | 15.34 | 0.00 | 3.9 | 96.1 | 0.0 | 0.13 | 2.69 | 0.84 | 0.72 | — | 16352 | 1932 | 11 | 26 | 7 | 0 | 0 | logfile |
✔ | 7T32 | 25648 | 2024-03-10 | 2021-12-06 | 3.4 | 3.96 | — | 3.9 | 0.006 | 0.77 | 0.0 | 0.04 | 14.07 | 0.01 | 2.313 | 6.67 | 0.00 | 5.1 | 94.6 | 0.3 | 1.86 | 0.44 | 0.76 | 0.75 | 3.9 | 0.003 | 0.67 | 0.0 | 0.04 | 16.13 | 0.00 | 2.231 | 8.44 | 3.17 | 4.9 | 94.9 | 0.3 | 2.40 | 0.93 | 0.45 | 0.80 | 0.68 | 2861 | 375 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7N58 | 24182 | 2024-03-14 | 2021-06-05 | 3.4 | 3.79 | 3.58 | 3.8 | 0.004 | 0.84 | 0.0 | 0.05 | 13.09 | 0.01 | 2.146 | 14.80 | 0.00 | 2.8 | 97.2 | 0.0 | -0.83 | 0.61 | 0.67 | 1.16 | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 16.08 | 0.00 | 2.197 | 9.58 | 1.59 | 3.8 | 96.2 | 0.0 | 1.02 | 0.54 | 0.64 | 0.71 | 0.97 | 9326 | 1200 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q3D | 13789 | 2024-03-18 | 2021-10-27 | 3.35 | 4.59 | 3.40 | 3.7 | 0.013 | 1.35 | 0.0 | 0.08 | 11.91 | 0.01 | 2.466 | 1.34 | 0.00 | 1.5 | 98.5 | 0.0 | 0.50 | 0.86 | 0.73 | 0.90 | 3.7 | 0.004 | 0.67 | 0.0 | 0.04 | 14.88 | 0.00 | 1.913 | 15.82 | 2.34 | 4.6 | 95.4 | 0.0 | 0.05 | 2.92 | 0.87 | 0.74 | 0.91 | 22298 | 1391 | 3 | 0 | 0 | 0 | 11249 | logfile |
✘ | 7RWA | 24712 | 2024-03-17 | 2021-08-19 | 4.7 | 5.66 | 4.89 | 4.6 | 0.003 | 0.89 | 0.0 | 0.05 | 5.84 | 0.00 | 1.914 | 2.65 | 0.00 | 5.8 | 93.7 | 0.5 | -0.12 | 0.84 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16158 | 3244 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BZF | 30252 | 2024-03-14 | 2020-04-27 | 3.26 | 3.61 | 3.32 | 3.6 | 0.003 | 0.61 | 0.0 | 0.04 | 15.05 | 0.00 | 2.199 | 11.67 | 0.00 | 8.5 | 91.5 | 0.0 | -4.42 | 0.73 | 0.77 | 2.58 | 3.6 | 0.002 | 0.59 | 0.0 | 0.04 | 16.76 | 0.00 | 2.072 | 11.36 | 1.71 | 6.0 | 94.0 | 0.0 | -1.19 | 0.50 | 0.68 | 0.76 | 1.74 | 9932 | 1200 | 7 | 19 | 2 | 0 | 0 | logfile |
✔ | 6W6K | 21558 | 2024-03-25 | 2020-03-17 | 3.6 | 3.84 | — | 3.7 | 0.002 | 0.47 | 0.0 | 0.03 | 23.24 | 0.00 | 2.113 | 10.37 | 0.00 | 6.9 | 93.1 | 0.0 | -4.28 | 0.70 | 0.59 | 0.52 | 3.7 | 0.005 | 0.79 | 2.0 | 0.04 | 23.88 | 0.01 | 1.861 | 18.44 | 5.10 | 11.2 | 88.8 | 0.0 | -2.89 | 0.89 | 0.74 | 0.66 | 0.52 | 46934 | 1873 | 19 | 1534 | 1 | 0 | 0 | logfile |
✔ | 7LN1 | 23445 | 2024-03-22 | 2021-02-06 | 3.4 | 3.94 | 3.48 | 3.1 | 0.006 | 0.76 | 0.0 | 0.05 | 14.96 | 0.01 | 1.912 | 14.53 | 0.00 | 2.6 | 97.3 | 0.0 | 0.59 | 0.77 | 0.69 | 1.50 | 3.2 | 0.005 | 0.65 | 0.0 | 0.04 | 15.48 | 0.00 | 1.755 | 13.28 | 1.02 | 2.8 | 97.2 | 0.0 | 1.50 | 0.52 | 0.90 | 0.86 | 1.51 | 34796 | 4402 | 13 | 0 | 28 | 0 | 0 | logfile |
✔ | 7V84 | 31789 | 2024-03-11 | 2021-08-22 | 3.0 | 3.81 | — | 3.5 | 0.003 | 0.54 | 0.0 | 0.04 | 16.31 | 0.00 | 2.199 | 5.95 | 0.00 | 4.3 | 95.7 | 0.0 | -0.37 | 0.82 | 0.87 | 2.88 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 15.35 | 0.00 | 2.180 | 6.56 | 0.86 | 4.7 | 95.3 | 0.0 | 0.03 | 0.36 | 0.78 | 0.84 | 3.04 | 6636 | 797 | 9 | 0 | 13 | 0 | 0 | logfile |
✔ | 7LN3 | 23447 | 2024-03-22 | 2021-02-06 | 3.45 | 4.37 | 3.48 | 3.7 | 0.005 | 0.67 | 0.0 | 0.04 | 14.41 | 0.01 | 1.950 | 10.73 | 0.00 | 1.8 | 98.2 | 0.1 | 1.48 | 0.74 | 0.61 | 1.16 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 14.81 | 0.00 | 1.899 | 12.61 | 0.75 | 1.7 | 98.2 | 0.1 | 2.00 | 0.59 | 0.87 | 0.80 | 0.99 | 34920 | 4409 | 13 | 0 | 41 | 0 | 0 | logfile |
✔ | 3JBS | 6478 | 2024-03-10 | 2015-10-13 | 2.9 | 3.04 | — | 3.2 | 0.010 | 1.32 | 0.0 | 0.06 | 8.67 | 0.01 | 2.510 | 0.00 | 0.00 | 2.9 | 97.1 | 0.0 | 0.51 | 0.21 | 0.76 | 4.15 | 3.0 | 0.003 | 0.64 | 0.0 | 0.04 | 17.82 | 0.00 | 2.204 | 8.27 | 3.29 | 2.9 | 97.1 | 0.0 | 0.53 | 1.83 | 0.21 | 0.82 | 3.71 | 1401 | 175 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8E2A | 27830 | 2024-03-10 | 2022-08-14 | 2.8 | 3.28 | 2.87 | 3.2 | 0.004 | 0.71 | 0.0 | 0.05 | 14.47 | 0.00 | 2.173 | 6.65 | 0.00 | 2.4 | 97.6 | 0.0 | -0.21 | 0.67 | 0.79 | 4.70 | 3.2 | 0.004 | 0.61 | 0.0 | 0.04 | 16.66 | 0.00 | 2.175 | 5.16 | 1.00 | 2.2 | 97.8 | 0.0 | 0.56 | 0.39 | 0.65 | 0.79 | 4.13 | 5768 | 686 | 2 | 15 | 0 | 0 | 0 | logfile |
✔ | 7K9i | 22749 | 2024-03-10 | 2020-09-29 | 3.3 | 3.72 | 3.48 | 3.6 | 0.005 | 0.72 | 0.0 | 0.05 | 12.86 | 0.00 | 2.118 | 12.07 | 0.00 | 3.6 | 96.4 | 0.0 | -0.86 | 0.55 | 0.82 | 3.38 | 3.6 | 0.003 | 0.70 | 0.0 | 0.04 | 14.89 | 0.00 | 2.161 | 13.93 | 3.38 | 4.3 | 95.7 | 0.0 | -0.76 | 1.60 | 0.53 | 0.82 | 2.73 | 3295 | 423 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7SK7 | 25175 | 2024-03-16 | 2021-10-19 | 3.3 | 3.48 | — | 3.4 | 0.004 | 0.57 | 0.0 | 0.05 | 14.16 | 0.00 | 2.002 | 4.59 | 0.00 | 3.6 | 96.4 | 0.0 | -0.04 | 0.68 | 0.80 | 3.12 | 3.4 | 0.003 | 0.53 | 0.0 | 0.04 | 15.51 | 0.00 | 2.127 | 5.63 | 1.59 | 3.5 | 96.5 | 0.0 | 0.12 | 0.38 | 0.68 | 0.81 | 2.88 | 13455 | 854 | 6 | 0 | 2 | 0 | 6650 | logfile |
✔ | 7LN2 | 23446 | 2024-03-23 | 2021-02-06 | 3.63 | 4.55 | 3.68 | 3.6 | 0.004 | 0.65 | 0.0 | 0.04 | 14.33 | 0.00 | 1.983 | 11.36 | 0.00 | 1.6 | 98.3 | 0.1 | 1.50 | 0.73 | 0.58 | 0.81 | 3.7 | 0.002 | 0.62 | 0.0 | 0.04 | 14.98 | 0.00 | 1.968 | 12.71 | 0.97 | 2.0 | 97.9 | 0.1 | 1.88 | 1.25 | 0.90 | 0.85 | 0.73 | 34941 | 4411 | 13 | 0 | 41 | 0 | 0 | logfile |
✔ | 7K9K | 22751 | 2024-03-10 | 2020-09-29 | 3.14 | 3.44 | 3.39 | 3.5 | 0.006 | 0.96 | 0.0 | 0.06 | 15.51 | 0.01 | 2.188 | 11.03 | 0.00 | 3.8 | 96.2 | 0.0 | -1.35 | 0.46 | 0.77 | 2.35 | 3.5 | 0.004 | 0.73 | 0.0 | 0.05 | 15.20 | 0.00 | 2.194 | 10.55 | 2.89 | 3.6 | 96.4 | 0.0 | -0.74 | 0.45 | 0.45 | 0.78 | 2.44 | 3202 | 402 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7TEi | 25846 | 2024-03-19 | 2022-01-05 | 3.4 | 3.66 | 3.40 | 3.5 | 0.006 | 0.79 | 0.0 | 0.06 | 17.70 | 0.01 | 2.268 | 2.65 | 0.00 | 3.5 | 96.5 | 0.0 | -0.99 | 0.84 | 0.84 | 2.83 | 3.5 | 0.005 | 0.61 | 0.0 | 0.05 | 13.54 | 0.00 | 2.124 | 4.90 | 0.67 | 3.7 | 96.3 | 0.0 | 0.34 | 1.12 | 0.86 | 0.88 | 2.55 | 25420 | 3044 | 39 | 0 | 116 | 0 | 0 | logfile |
✔ | 7STE | 25426 | 2024-03-20 | 2021-11-12 | 2.73 | 3.42 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.04 | 14.06 | 0.00 | 2.030 | 3.56 | 0.00 | 2.0 | 98.0 | 0.0 | 3.20 | 0.82 | 0.83 | 2.63 | 3.2 | 0.004 | 0.57 | 0.0 | 0.04 | 15.48 | 0.00 | 1.910 | 6.41 | 0.63 | 2.4 | 97.6 | 0.0 | 2.58 | 1.18 | 0.81 | 0.87 | 3.14 | 28628 | 1774 | 10 | 0 | 6 | 0 | 14379 | logfile |
✔ | 7F63 | 31471 | 2024-03-10 | 2021-06-24 | 3.9 | 4.20 | — | 4.0 | 0.002 | 0.58 | 0.0 | 0.04 | 13.34 | 0.00 | 2.136 | 12.60 | 0.00 | 8.3 | 91.4 | 0.2 | -2.31 | 0.63 | 0.62 | 1.27 | 4.0 | 0.003 | 0.82 | 0.0 | 0.05 | 16.31 | 0.00 | 2.137 | 17.16 | 4.31 | 11.9 | 87.6 | 0.5 | -3.04 | 1.52 | 0.65 | 0.70 | 1.90 | 3375 | 429 | 3 | 0 | 0 | 0 | 0 | logfile |