Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6CVM	7770	2022-12-19	2018-03-28	1.9	2.49	1.94	2.3	0.012	0.92	0.0	0.07	10.17	0.01	2.053	4.13	0.00	2.7	97.3	0.0	-1.16	0.81	0.91	7.66	2.3	0.005	0.63	0.0	0.05	13.84	0.00	1.973	7.13	0.69	2.2	97.8	0.0	0.70	0.37	0.85	0.94	6.94	37062	4084	12	0	20	4194	0	logfile
✔	5TCP	8398	2022-12-14	2016-09-15	4.3	3.93	—	4.0	0.013	1.38	0.0	0.07	9.90	0.01	2.479	1.03	0.00	3.5	95.5	1.1	-0.87	0.77	0.79	—	3.9	0.003	0.58	0.0	0.04	12.65	0.00	2.205	6.61	0.00	3.3	96.5	0.3	1.91	0.86	0.80	0.84	—	72888	9072	48	0	0	0	0	logfile
✔	6MB3	9065	2022-12-13	2018-08-29	3.37	3.47	—	3.4	0.020	1.75	0.0	0.09	9.45	0.01	2.273	0.34	0.00	3.7	96.1	0.1	0.34	0.73	0.86	4.52	3.4	0.003	0.68	0.0	0.04	14.06	0.00	2.187	7.60	0.12	5.6	94.3	0.0	-0.18	1.27	0.74	0.87	3.73	16423	2178	19	0	0	0	0	logfile
✔	6N1R	9318	2022-12-21	2018-11-10	4.0	4.12	—	4.0	0.006	0.89	0.0	0.05	8.46	0.01	0.296	17.83	0.00	8.7	91.3	0.0	-2.90	0.80	0.71	—	4.0	0.004	0.76	0.0	0.05	12.80	0.00	2.118	17.37	0.48	7.1	92.9	0.0	0.31	1.68	0.83	0.78	—	46044	5796	12	0	0	0	0	logfile
✔	6PBX	20294	2022-12-14	2019-06-14	4.0	4.12	—	4.0	0.006	0.83	0.0	0.05	14.04	0.01	2.264	6.12	0.00	3.8	96.2	0.0	-3.07	0.68	0.67	—	4.0	0.003	0.70	0.0	0.04	15.25	0.00	2.136	14.36	0.05	4.2	95.8	0.0	1.48	0.72	0.73	0.78	—	23028	3152	8	0	0	0	0	logfile
✔	6CNM	7537	2022-12-12	2018-03-08	3.4	3.51	—	3.5	0.009	1.03	0.0	0.05	10.36	0.01	2.331	1.63	0.00	4.3	95.7	0.0	-4.29	0.64	0.84	3.41	3.5	0.003	0.52	0.0	0.04	13.57	0.00	2.190	3.88	0.19	3.0	97.0	0.0	2.21	0.55	0.63	0.85	2.33	12541	1700	12	0	17	0	0	logfile
✔	6T72	10389	2022-12-15	2019-10-21	3.7	3.79	—	3.8	0.013	1.64	0.0	0.11	14.69	0.02	2.167	4.27	0.00	2.1	97.9	0.0	-2.53	0.76	0.87	2.40	3.7	0.002	0.53	0.0	0.03	14.78	0.00	2.127	3.35	0.30	2.0	98.0	0.0	1.81	1.24	0.77	0.87	1.64	26278	3388	42	0	210	0	0	logfile
✔	6F0K	4165	2022-12-20	2017-11-20	3.87	3.98	—	3.9	0.022	1.29	0.0	0.14	11.89	0.01	1.943	10.92	0.00	14.2	85.8	0.0	-5.22	0.65	0.72	1.34	3.9	0.004	0.94	0.0	0.08	15.27	0.01	1.842	20.44	0.53	12.6	87.4	0.0	-3.17	1.48	0.66	0.74	1.32	39868	2504	10	0	10	0	19577	logfile
✔	6E7C	8998	2022-12-11	2018-07-25	3.65	3.83	3.42	3.8	0.007	0.85	0.0	0.04	12.40	0.00	1.901	7.88	0.00	6.8	93.2	0.0	-4.32	0.50	0.75	3.05	3.8	0.005	0.78	0.0	0.05	15.93	0.00	1.916	20.19	0.68	5.3	94.7	0.0	-2.25	0.94	0.51	0.78	2.78	6780	854	4	0	4	0	0	logfile
✔	6SP2	10279	2022-12-14	2019-08-30	3.33	3.92	3.50	3.8	0.006	0.85	0.0	0.05	15.17	0.00	1.590	8.11	0.00	4.7	95.3	0.0	-0.56	0.49	0.67	2.32	3.8	0.003	0.66	0.0	0.04	14.85	0.00	2.207	5.66	0.21	3.8	96.2	0.0	2.75	1.49	0.63	0.80	1.58	18498	2190	12	0	24	0	0	logfile
✔	6CNN	7538	2022-12-13	2018-03-08	3.5	3.63	—	3.6	0.008	1.00	0.0	0.05	10.13	0.01	2.016	1.37	0.00	4.0	96.0	0.0	-4.29	0.66	0.83	2.52	3.6	0.004	0.62	0.0	0.04	15.09	0.00	2.177	4.78	0.66	2.2	97.8	0.0	2.39	0.75	0.66	0.83	1.89	15740	2024	16	0	28	0	0	logfile
✔	6E7Y	9001	2022-12-13	2018-07-27	3.57	3.68	—	3.7	0.005	0.81	0.0	0.05	10.18	0.01	2.364	2.19	0.00	7.1	92.9	0.0	-5.91	0.63	0.80	2.96	3.7	0.002	0.68	0.0	0.04	14.29	0.00	2.317	6.14	0.47	4.8	95.2	0.0	-0.54	1.34	0.63	0.82	2.62	15508	1900	8	0	4	0	0	logfile
✘	6Q2R	20578	2022-12-18	2019-08-08	4.3	4.92	—	4.6	0.004	0.81	0.0	0.05	8.41	0.01	1.384	4.93	0.00	5.4	94.6	0.0	-3.85	0.68	0.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30392	3800	16	0	40	0	0	logfile
✔	6H05	0108	2022-12-21	2018-07-06	2.9	3.15	—	3.5	0.016	1.09	0.0	0.07	9.74	0.01	0.426	17.81	0.00	8.5	91.5	0.0	-5.50	0.36	0.13	0.50	3.1	0.003	0.86	0.0	0.04	15.56	0.00	2.134	15.94	2.28	4.3	95.7	0.0	-1.34	1.63	0.58	0.47	0.65	44544	5664	24	0	0	0	0	logfile
✔	6GC6	4381	2022-12-12	2018-04-17	4.3	5.02	—	4.5	0.003	0.66	0.0	0.03	12.88	0.00	2.229	5.32	0.00	6.0	93.9	0.1	-3.94	0.74	0.57	—	4.5	0.009	0.73	0.0	0.04	15.64	0.00	1.990	29.10	0.00	9.6	90.4	0.0	-2.05	2.14	0.91	0.86	—	61404	2118	19	2092	0	0	0	logfile
✔	6oR5	9032	2022-12-12	2019-04-29	4.0	4.23	—	3.9	0.008	1.12	0.0	0.05	10.85	0.00	2.245	4.84	0.00	17.3	82.4	0.3	-5.53	0.76	0.79	—	3.9	0.002	0.56	0.0	0.04	7.06	0.00	2.221	3.09	0.00	12.5	87.5	0.0	-0.20	1.35	0.78	0.79	—	10364	2058	1	0	5	0	0	logfile
✔	6CoZ	7545	2022-12-11	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.82	0.0	0.04	4.96	0.00	2.368	4.42	0.00	8.3	91.7	0.0	-1.63	1.58	0.82	0.77	—	1586	320	2	0	0	0	0	logfile
✔	6G9o	4367	2022-12-19	2018-04-11	4.25	4.47	—	4.2	0.007	0.84	0.0	0.05	8.43	0.01	2.233	1.42	0.00	4.0	96.0	0.0	-2.09	0.74	0.81	—	4.2	0.002	0.58	0.0	0.04	10.97	0.00	2.219	9.47	0.00	3.7	96.3	0.0	-0.15	1.31	0.74	0.83	—	35532	4308	6	0	0	0	0	logfile
✔	6P7M	20266	2022-12-14	2019-06-06	3.0	3.31	3.09	3.3	0.006	0.63	0.0	0.05	14.13	0.00	2.043	8.02	0.00	5.6	94.4	0.0	-3.37	0.72	0.84	3.74	3.3	0.004	0.58	0.0	0.04	16.14	0.00	2.025	8.57	1.23	4.4	95.6	0.0	-0.19	0.99	0.72	0.83	3.09	10141	1168	4	26	2	0	0	logfile
✔	6UQK	20849	2022-12-22	2019-10-20	3.77	4.46	4.11	4.3	0.003	0.53	0.0	0.04	9.91	0.00	2.196	0.22	0.00	5.0	95.0	0.0	-1.84	0.74	0.78	1.71	4.3	0.003	0.60	0.0	0.04	12.63	0.00	2.251	4.46	0.41	7.5	92.5	0.0	1.15	0.61	0.75	0.81	1.93	51567	8032	8	0	188	0	0	logfile

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