Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WX6	21951	2021-08-10	2020-05-09	2.0	2.10	2.08	2.1	0.006	0.69	0.0	0.04	14.94	0.00	2.277	0.00	0.00	1.2	98.8	0.0	1.60	0.77	0.88	7.70	2.1	0.003	0.52	0.0	0.03	16.24	0.00	2.012	2.81	0.69	1.2	98.8	0.0	4.76	0.53	0.78	0.89	7.38	68332	4128	56	0	8	2420	32664	logfile
✔	7BRM	30160	2021-08-09	2020-03-29	3.6	3.70	3.49	3.7	0.011	0.84	0.0	0.05	13.83	0.00	2.128	16.83	0.00	14.1	85.9	0.0	-3.24	0.75	0.86	2.91	3.7	0.003	0.64	0.0	0.04	15.45	0.00	2.098	12.75	0.23	7.7	92.3	0.0	-0.25	0.64	0.74	0.84	2.34	20277	2619	18	0	0	0	0	logfile
✔	6Uo8	20822	2021-08-08	2019-10-14	3.63	3.97	—	3.8	0.006	0.74	0.0	0.05	13.36	0.01	2.290	4.07	0.00	7.8	92.2	0.0	-3.75	0.76	0.83	2.87	3.8	0.003	0.66	0.0	0.04	15.04	0.00	2.164	7.21	0.09	6.0	94.0	0.0	-0.80	1.26	0.77	0.83	2.76	10958	1385	7	0	15	0	0	logfile
✔	6SGR	10182	2021-08-08	2019-08-05	3.17	3.28	3.08	3.2	0.004	0.54	0.0	0.04	13.56	0.00	2.201	5.08	0.00	3.2	96.8	0.0	-3.06	0.69	0.83	3.52	3.2	0.010	0.85	1.0	0.04	15.56	0.00	1.910	6.17	0.03	2.9	97.1	0.0	1.04	0.78	0.71	0.86	2.81	54142	3528	8	0	0	0	27330	logfile
✔	6VTT	21383	2021-08-08	2020-02-13	3.7	4.22	3.79	4.0	0.004	0.64	3.0	0.05	10.83	0.01	2.214	6.18	0.00	4.6	95.4	0.0	-4.61	0.82	0.82	2.05	4.0	0.005	0.65	0.0	0.05	13.48	0.00	2.168	9.91	0.24	6.9	93.1	0.0	-2.01	0.52	0.83	0.84	1.97	16607	1928	36	0	103	0	0	logfile
✔	6ZS5	11388	2021-08-07	2020-07-15	3.5	4.02	3.66	3.8	0.008	1.01	1.0	0.06	15.42	0.01	2.202	4.52	0.00	4.7	95.3	0.0	-2.98	0.67	0.80	2.81	3.9	0.004	0.71	0.0	0.04	17.56	0.01	2.227	8.30	0.47	2.8	97.2	0.0	-1.73	2.37	0.67	0.79	2.36	2036	257	4	0	7	0	0	logfile
✔	6Vo0	21256	2021-08-09	2020-01-29	3.52	3.99	—	3.9	0.021	1.78	0.0	0.10	10.05	0.01	2.380	1.59	0.00	3.6	95.6	0.8	0.22	0.77	0.83	2.86	3.9	0.010	1.06	1.0	0.05	14.72	0.00	2.152	11.57	0.24	6.6	92.7	0.7	-0.66	1.98	0.77	0.83	2.04	19494	2364	36	0	72	0	0	logfile
✔	6VFi	21173	2021-08-09	2020-01-05	4.54	4.63	4.96	4.5	0.018	1.47	0.0	0.09	10.93	0.01	2.449	0.41	0.00	1.3	98.7	0.0	1.21	0.80	0.78	—	4.5	0.003	0.73	0.0	0.04	13.25	0.00	2.139	16.30	0.00	4.2	95.8	0.0	1.74	2.18	0.77	0.74	—	58488	7560	48	0	0	0	0	logfile
✔	6Y50	10688	2021-08-08	2020-02-24	4.1	4.22	—	4.0	0.003	0.52	0.0	0.04	6.93	0.00	0.761	13.78	0.00	5.9	93.9	0.2	-3.48	0.68	0.68	—	4.0	0.011	0.88	0.0	0.05	10.10	0.01	1.980	11.79	0.00	15.0	84.9	0.1	-2.34	0.71	0.72	0.74	—	14916	2537	10	50	3	0	0	logfile
✔	6WW2	21927	2021-08-07	2020-05-07	3.7	4.24	—	4.0	0.010	1.09	0.0	0.06	14.27	0.01	2.240	5.73	0.00	10.3	89.6	0.1	-2.34	0.68	0.81	1.89	4.0	0.013	1.36	1.0	0.04	15.29	0.00	2.124	12.72	0.12	6.8	93.1	0.1	-0.73	0.47	0.68	0.80	1.28	7594	982	4	0	0	0	0	logfile
✔	6XJB	22205	2021-08-07	2020-06-23	3.8	4.06	—	3.9	0.002	0.56	0.0	0.04	13.15	0.00	2.165	9.65	0.00	8.6	91.4	0.0	-3.06	0.88	0.82	1.76	3.9	0.004	0.66	0.0	0.04	15.50	0.00	2.063	12.62	0.46	7.9	92.1	0.0	-1.38	1.84	0.88	0.86	2.30	10070	1277	1	0	0	0	0	logfile
✔	6ZVH	11456	2021-08-11	2020-07-24	2.9	3.10	2.84	2.8	0.008	0.95	1.0	0.05	15.50	0.01	1.992	4.93	0.00	4.9	94.9	0.2	-2.07	0.54	0.88	3.23	2.8	0.006	0.73	0.0	0.04	16.26	0.01	1.921	8.99	1.99	8.4	91.4	0.2	-0.89	1.11	0.54	0.89	2.89	79014	5074	43	1815	33	0	0	logfile
✘	7JPR	22420	2021-08-08	2020-08-09	4.0	4.90	—	3.3	0.006	1.20	0.0	0.06	15.00	0.01	2.048	5.46	0.00	3.6	96.4	0.0	-2.74	0.82	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16737	2045	8	0	6	0	0	logfile
✔	7JPo	22417	2021-08-08	2020-08-09	3.2	2.55	—	3.2	0.007	1.09	0.0	0.06	15.53	0.01	2.073	2.36	0.00	3.0	97.0	0.0	-1.99	0.79	0.81	2.74	3.2	0.002	0.54	0.0	0.04	17.03	0.00	2.021	5.56	0.00	2.1	97.9	0.0	0.72	0.47	0.80	0.82	1.69	16087	1966	9	0	7	0	0	logfile
✔	7JPQ	22419	2021-08-08	2020-08-09	3.5	3.56	—	3.5	0.008	1.14	0.0	0.06	14.27	0.01	2.088	2.16	0.00	3.0	97.0	0.0	-2.05	0.71	0.81	2.78	3.5	0.007	0.85	0.0	0.04	16.09	0.00	1.991	5.33	0.19	3.2	96.8	0.0	0.50	0.56	0.74	0.83	1.86	13863	1691	6	0	4	0	0	logfile
✔	6VKT	21229	2021-08-09	2020-01-22	2.72	3.21	—	3.1	0.006	0.65	0.0	0.17	14.68	0.01	1.442	19.74	0.00	2.6	97.4	0.0	-1.19	0.73	0.83	2.87	3.1	0.003	0.70	0.0	0.07	15.15	0.00	2.096	5.97	1.48	3.0	97.0	0.0	1.52	0.58	0.76	0.87	2.55	24331	3122	6	0	24	0	0	logfile
✔	7C2K	30275	2021-08-08	2020-05-07	2.93	3.24	3.00	3.1	0.007	0.68	0.0	0.04	13.79	0.00	2.256	7.20	0.00	4.5	95.5	0.0	-2.91	0.78	0.89	4.22	3.1	0.002	0.54	0.0	0.04	15.36	0.00	2.219	6.43	1.54	4.2	95.8	0.0	-0.49	0.93	0.76	0.89	3.72	10692	1256	7	31	3	0	0	logfile
✔	6VFH	21172	2021-08-10	2020-01-05	3.86	3.96	3.81	3.9	0.019	1.39	0.0	0.08	9.31	0.01	2.497	0.33	0.00	0.8	99.2	0.0	2.06	0.75	0.80	1.89	3.9	0.003	0.65	0.0	0.04	17.13	0.00	2.081	9.42	0.55	1.7	98.3	0.0	3.54	2.51	0.76	0.80	1.08	36984	4752	24	0	0	0	0	logfile
✔	6ZiQ	11228	2021-08-09	2020-06-26	4.33	3.58	4.02	3.4	0.005	0.74	0.0	0.08	14.67	0.00	1.911	18.83	0.00	8.6	91.4	0.0	-1.50	0.48	0.72	—	3.4	0.003	0.61	0.0	0.08	14.66	0.00	1.965	11.97	0.08	4.6	95.4	0.0	1.04	0.63	0.47	0.71	—	22255	1385	15	0	0	0	11316	logfile
✔	6ZG8	11196	2021-08-08	2020-06-18	3.49	2.83	3.28	3.2	0.006	0.67	0.0	0.04	15.06	0.00	2.041	11.93	0.00	3.9	96.1	0.0	0.37	0.52	0.76	2.19	3.2	0.003	0.53	0.0	0.04	16.32	0.00	2.050	8.42	0.13	2.3	97.2	0.5	2.13	0.42	0.53	0.77	1.93	15522	1045	11	0	0	0	7815	logfile

• ← previous
• Page 3 of 276
• next →