Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ZPi	11340	2021-12-01	2020-07-08	4.5	4.63	—	4.4	0.007	1.14	3.0	0.06	15.34	0.01	1.667	13.95	0.00	4.6	95.4	0.0	-0.24	0.77	0.52	—	4.4	0.003	0.71	0.0	0.04	14.45	0.01	1.945	16.05	0.00	5.1	94.9	0.1	0.13	1.11	0.84	0.79	—	9412	1184	6	1	5	0	0	logfile
✔	7KPW	22990	2021-12-01	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.8	0.005	0.86	0.0	0.04	6.91	0.00	2.059	5.41	0.00	14.6	84.8	0.6	-1.66	2.04	0.83	0.83	—	4313	865	1	0	0	0	0	logfile
✔	7CZ6	30507	2021-12-01	2020-09-07	4.1	4.07	—	4.1	0.009	1.62	0.0	0.05	8.57	0.01	1.047	53.34	0.00	8.1	91.9	0.0	-1.66	0.61	0.58	—	4.1	0.004	0.82	0.0	0.05	10.87	0.01	2.091	15.47	0.00	6.2	93.8	0.0	-1.99	0.85	0.61	0.72	—	5442	756	6	0	0	0	0	logfile
✔	7JVQ	22510	2021-12-01	2020-08-22	3.0	3.32	—	3.3	0.005	0.99	0.0	0.06	8.71	0.01	2.268	4.24	0.00	3.1	96.9	0.0	-2.33	0.61	0.76	2.77	3.3	0.003	0.61	0.0	0.04	14.64	0.00	2.110	7.06	2.44	1.8	98.2	0.0	0.54	1.25	0.60	0.77	2.36	8485	1047	6	0	9	0	0	logfile
✔	7JNA	22403	2021-12-01	2020-08-04	3.6	3.74	—	3.8	0.004	0.69	0.0	0.04	13.30	0.03	2.215	11.86	0.00	4.3	95.7	0.0	-3.83	0.63	0.71	1.86	3.8	0.017	1.55	0.0	0.05	16.19	0.01	2.014	15.10	0.18	4.0	95.9	0.1	-0.71	0.84	0.68	0.77	2.33	6432	834	9	0	15	0	0	logfile
✔	6YKR	10830	2021-12-02	2020-04-06	3.0	3.10	2.86	3.1	0.004	0.84	0.0	0.05	9.41	0.01	2.314	2.28	0.00	2.6	97.4	0.0	-6.35	0.66	0.84	5.11	3.1	0.003	0.67	0.0	0.04	16.26	0.00	2.265	7.76	0.93	2.4	97.6	0.0	1.12	0.80	0.69	0.88	3.46	10189	1326	9	0	0	6	0	logfile
✔	7C8K	30306	2021-12-01	2020-06-02	3.2	3.18	—	3.1	0.002	0.49	0.0	0.04	13.54	0.00	2.001	4.88	0.00	3.2	96.8	0.0	-1.52	0.82	0.78	2.09	3.1	0.003	0.53	0.0	0.04	15.51	0.00	2.220	7.11	0.20	3.9	96.1	0.0	1.51	0.53	0.84	0.81	3.09	4853	596	3	0	6	0	0	logfile
✔	6YKM	10828	2021-12-02	2020-04-06	3.1	3.19	2.97	3.2	0.009	1.07	0.0	0.06	11.10	0.01	2.256	4.12	0.00	3.0	97.0	0.0	-4.68	0.68	0.86	4.14	3.2	0.003	0.59	0.0	0.04	14.94	0.00	2.166	9.33	0.09	2.8	97.2	0.0	1.07	1.09	0.72	0.88	2.26	10434	1357	10	0	0	8	0	logfile
✘	7LJD	23391	2021-12-01	2021-01-28	3.2	3.31	—	3.3	0.004	0.90	0.0	0.06	8.40	0.01	2.294	3.63	0.00	2.2	97.8	0.0	-2.10	0.57	0.72	2.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8518	1046	6	0	11	0	0	logfile
✔	6XJB	22205	2021-12-01	2020-06-23	3.8	4.06	—	3.9	0.002	0.56	0.0	0.04	13.15	0.00	2.165	9.70	0.00	8.6	91.4	0.0	-3.06	0.88	0.82	1.76	3.9	0.005	0.69	0.0	0.04	15.37	0.00	2.075	14.23	0.46	8.2	91.8	0.0	-1.64	1.83	0.88	0.86	2.01	10070	1277	1	0	0	0	0	logfile
✔	7AXZ	11933	2021-12-01	2020-11-10	3.2	3.26	—	3.5	0.009	0.87	0.0	0.05	14.88	0.01	1.911	11.53	0.00	10.2	89.8	0.0	-2.73	0.75	0.78	2.55	3.5	0.003	0.63	0.0	0.04	16.74	0.00	2.229	9.24	0.11	2.9	97.1	0.0	-0.45	1.20	0.75	0.79	1.97	8225	1023	2	0	0	0	0	logfile
✔	7CMU	30410	2021-12-01	2020-07-29	3.0	3.27	—	3.3	0.005	0.49	0.0	0.04	12.33	0.00	1.996	4.07	0.00	1.7	98.3	0.0	2.96	0.61	0.74	2.42	3.3	0.005	0.70	0.0	0.04	16.18	0.01	2.046	8.88	2.81	3.1	96.9	0.0	1.55	1.18	0.66	0.81	2.42	8771	1123	5	0	1	0	0	logfile
✔	6XMF	22257	2021-12-01	2020-06-30	3.1	3.28	—	3.3	0.002	0.56	0.0	0.03	16.46	0.00	2.246	8.52	0.00	6.8	93.2	0.0	-1.78	0.68	0.71	2.25	3.2	0.003	0.61	0.0	0.03	17.72	0.00	2.149	15.63	0.20	9.8	90.2	0.0	-0.48	0.47	0.72	0.76	2.71	7382	627	3	109	1	0	0	logfile
✔	7KY8	23071	2021-12-02	2020-12-07	3.85	3.91	—	3.9	0.004	0.70	0.0	0.05	14.37	0.00	2.208	13.00	0.00	8.4	91.6	0.0	-1.28	0.70	0.84	2.33	3.9	0.003	0.59	0.0	0.04	16.01	0.00	2.193	10.72	0.45	7.5	92.5	0.0	-1.10	0.33	0.70	0.84	2.14	10520	1274	8	0	19	0	0	logfile
✘	6ZRF	11380	2021-12-01	2020-07-13	3.6	3.66	1.96	3.6	0.014	1.03	0.0	0.05	13.43	0.00	1.993	42.14	0.00	4.9	95.1	0.0	-6.22	0.67	0.79	1.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2220	300	12	0	0	0	0	logfile
✔	7KAN	22776	2021-12-02	2020-10-01	3.7	4.55	3.92	4.2	0.004	0.72	0.0	0.04	12.73	0.00	2.197	6.18	0.00	3.3	96.7	0.0	-1.67	0.62	0.76	1.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10526	1371	7	0	2	0	0	logfile
✔	6ZD0	11172	2021-12-01	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	3.7	0.003	0.74	0.0	0.04	5.33	0.00	2.199	10.22	0.00	19.5	80.1	0.4	-4.32	2.53	0.59	0.58	—	7962	1611	6	0	0	0	0	logfile
✘	7oP8	13014	2021-12-01	2021-05-31	3.5	3.85	—	3.8	0.004	0.86	0.0	0.05	14.44	0.01	1.950	6.24	0.00	5.6	94.4	0.0	-1.73	0.66	0.77	1.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8872	1118	1	0	2	0	0	logfile
✘	6X17	21991	2021-12-01	2020-05-18	3.66	3.75	—	3.7	0.007	1.05	0.0	0.05	15.45	0.01	2.284	4.19	0.00	3.4	96.6	0.0	-3.74	0.64	0.85	2.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9390	1245	9	0	3	3	0	logfile
✔	6X14	21988	2021-12-01	2020-05-18	3.71	3.82	—	3.8	0.008	1.10	0.0	0.05	16.45	0.01	2.282	6.68	0.00	3.2	96.8	0.0	-4.81	0.62	0.83	1.45	3.9	0.007	0.86	0.0	0.04	16.77	0.00	2.188	7.97	0.00	3.0	97.0	0.0	0.10	1.15	0.61	0.83	1.32	9486	1239	6	0	9	0	0	logfile

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