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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7TSZ | 26105 | 2023-04-25 | 2022-01-31 | 4.5 | 4.77 | — | 4.6 | 0.005 | 0.89 | 0.0 | 0.05 | 11.13 | 0.01 | 2.032 | 6.90 | 0.00 | 1.2 | 98.8 | 0.0 | 0.72 | 0.73 | 0.70 | — | 4.6 | 0.003 | 0.62 | 0.0 | 0.04 | 12.84 | 0.00 | 1.933 | 11.88 | 0.00 | 6.2 | 93.8 | 0.0 | -1.01 | 1.09 | 0.74 | 0.74 | — | 19722 | 1286 | 6 | 0 | 0 | 0 | 9670 | logfile |
✔ | 5V4S | 8632 | 2023-04-21 | 2017-03-10 | 4.2 | 4.02 | — | 4.2 | 0.012 | 1.56 | 20.0 | 0.14 | 8.80 | 0.01 | 2.352 | 3.29 | 0.00 | 6.6 | 93.1 | 0.3 | -1.95 | 0.58 | 0.73 | — | 4.1 | 0.003 | 0.56 | 0.0 | 0.04 | 12.67 | 0.00 | 2.165 | 4.59 | 0.00 | 2.4 | 97.6 | 0.0 | 3.09 | 1.04 | 0.57 | 0.72 | — | 10756 | 1548 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M3F | 23653 | 2023-04-22 | 2021-03-18 | 2.8 | 2.45 | — | 2.7 | 0.008 | 1.01 | 0.0 | 0.06 | 12.33 | 0.01 | 2.245 | 2.64 | 0.00 | 5.0 | 95.0 | 0.0 | -2.56 | 0.84 | 0.86 | 4.26 | 2.7 | 0.003 | 0.57 | 0.0 | 0.04 | 14.96 | 0.00 | 2.124 | 4.04 | 1.24 | 3.7 | 96.2 | 0.1 | -0.33 | 0.40 | 0.84 | 0.87 | 3.36 | 13084 | 1631 | 7 | 0 | 23 | 0 | 0 | logfile |
✔ | 6UWL | 20923 | 2023-04-20 | 2019-11-05 | 3.62 | 3.73 | — | 3.7 | 0.008 | 1.16 | 0.0 | 0.06 | 16.05 | 0.01 | 2.303 | 6.24 | 0.00 | 7.6 | 92.2 | 0.3 | -4.71 | 0.67 | 0.82 | 1.71 | 3.7 | 0.004 | 0.79 | 0.0 | 0.05 | 15.90 | 0.00 | 2.216 | 15.05 | 0.64 | 6.6 | 93.4 | 0.0 | -0.23 | 0.56 | 0.66 | 0.81 | 1.61 | 3029 | 402 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6UWF | 20922 | 2023-04-19 | 2019-11-05 | 3.08 | 3.26 | — | 3.3 | 0.008 | 1.08 | 0.0 | 0.05 | 16.40 | 0.01 | 2.294 | 2.14 | 0.00 | 3.1 | 96.9 | 0.0 | -3.86 | 0.70 | 0.85 | 2.48 | 3.3 | 0.003 | 0.57 | 0.0 | 0.04 | 15.31 | 0.00 | 2.245 | 6.57 | 0.62 | 3.1 | 96.9 | 0.0 | 1.17 | 1.10 | 0.67 | 0.85 | 2.62 | 3178 | 417 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6U5o | 20651 | 2023-04-27 | 2019-08-28 | 3.7 | 3.81 | — | 3.8 | 0.005 | 0.78 | 0.0 | 0.04 | 14.70 | 0.01 | 2.093 | 5.81 | 0.00 | 0.0 | 100.0 | 0.0 | -4.22 | 0.65 | 0.75 | 1.93 | 3.8 | 0.004 | 0.65 | 0.0 | 0.04 | 16.90 | 0.00 | 1.877 | 10.11 | 0.21 | 8.1 | 91.9 | 0.0 | -1.12 | 1.52 | 0.66 | 0.79 | 2.07 | 26316 | 1623 | 5 | 0 | 0 | 0 | 13339 | logfile |
✔ | 6oLK | 20115 | 2023-04-25 | 2019-04-16 | 4.0 | 4.14 | — | 4.1 | 0.005 | 1.04 | 0.0 | 0.06 | 5.09 | 0.01 | 2.445 | 0.20 | 0.00 | 2.3 | 97.7 | 0.0 | -0.75 | 0.56 | 0.49 | — | 4.1 | 0.005 | 0.93 | 0.0 | 0.05 | 7.00 | 0.00 | 2.045 | 9.16 | 0.00 | 14.0 | 86.0 | 0.0 | -2.47 | 1.44 | 0.64 | 0.61 | — | 10323 | 2094 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D64 | 27216 | 2023-04-22 | 2022-06-06 | 3.14 | 3.25 | 3.11 | 3.2 | 0.007 | 0.81 | 0.0 | 0.06 | 13.69 | 0.01 | 2.275 | 7.13 | 0.00 | 6.6 | 93.4 | 0.0 | -3.61 | 0.72 | 0.84 | 3.27 | 3.2 | 0.005 | 0.65 | 0.0 | 0.05 | 15.07 | 0.00 | 2.198 | 6.33 | 0.58 | 6.2 | 93.8 | 0.0 | -0.53 | 0.37 | 0.73 | 0.87 | 3.23 | 12545 | 1540 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6W17 | 21502 | 2023-04-28 | 2020-03-03 | 3.9 | 3.99 | 3.93 | 3.9 | 0.003 | 0.59 | 0.0 | 0.04 | 12.66 | 0.00 | 1.894 | 5.87 | 0.00 | 4.9 | 95.1 | 0.0 | -3.15 | 0.87 | 0.82 | 1.39 | 3.9 | 0.003 | 0.73 | 0.0 | 0.04 | 15.33 | 0.00 | 1.949 | 11.65 | 0.28 | 5.8 | 94.2 | 0.0 | -0.82 | 0.67 | 0.89 | 0.85 | 1.85 | 27396 | 3518 | 23 | 0 | 12 | 0 | 0 | logfile |
✔ | 6MPB | 9188 | 2023-04-21 | 2018-10-05 | 3.84 | 4.03 | 4.02 | 4.0 | 0.005 | 1.09 | 0.0 | 0.06 | 10.52 | 0.01 | 2.338 | 3.82 | 0.00 | 8.9 | 91.1 | 0.0 | -5.90 | 0.71 | 0.78 | 2.00 | 4.0 | 0.003 | 0.87 | 0.0 | 0.04 | 15.43 | 0.00 | 2.137 | 12.04 | 0.77 | 6.9 | 93.1 | 0.0 | -0.16 | 1.51 | 0.72 | 0.82 | 2.03 | 9969 | 1341 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 6T23 | 10365 | 2023-04-23 | 2019-10-07 | 3.1 | 3.12 | 3.08 | 3.1 | 0.050 | 3.17 | 0.0 | 0.23 | 14.19 | 0.01 | 2.141 | 2.13 | 0.00 | 0.8 | 99.2 | 0.0 | 0.95 | 0.75 | 0.84 | 3.46 | 3.1 | 0.003 | 1.52 | 0.0 | 0.04 | 16.72 | 0.00 | 1.969 | 12.50 | 0.26 | 1.5 | 98.5 | 0.0 | 1.31 | 0.73 | 0.74 | 0.87 | 3.00 | 14910 | 1855 | 10 | 0 | 20 | 0 | 0 | logfile |
✔ | 6X12 | 21986 | 2023-04-19 | 2020-05-18 | 3.52 | 3.69 | — | 3.7 | 0.008 | 1.08 | 0.0 | 0.06 | 15.87 | 0.01 | 2.322 | 3.01 | 0.00 | 2.7 | 97.3 | 0.0 | -5.29 | 0.65 | 0.84 | 1.43 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 15.88 | 0.00 | 2.262 | 7.77 | 0.63 | 2.7 | 97.3 | 0.0 | 0.14 | 1.20 | 0.66 | 0.84 | 1.26 | 3059 | 407 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7FHL | 31586 | 2023-04-23 | 2021-07-29 | 3.1 | 3.71 | — | 3.6 | 0.002 | 0.55 | 0.0 | 0.03 | 12.50 | 0.00 | 2.150 | 6.83 | 0.00 | 1.2 | 98.8 | 0.0 | 1.13 | 0.70 | 0.81 | 1.99 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 14.76 | 0.00 | 2.137 | 8.87 | 0.08 | 2.0 | 98.0 | 0.0 | 2.22 | 0.46 | 0.69 | 0.82 | 1.68 | 11058 | 1326 | 6 | 0 | 28 | 0 | 0 | logfile |
✔ | 8D68 | 27220 | 2023-04-22 | 2022-06-06 | 3.36 | 3.13 | 3.28 | 3.2 | 0.008 | 1.06 | 0.0 | 0.06 | 15.51 | 0.01 | 2.212 | 3.37 | 0.00 | 7.0 | 93.0 | 0.0 | -1.43 | 0.70 | 0.84 | 3.63 | 3.2 | 0.005 | 0.68 | 0.0 | 0.05 | 15.03 | 0.00 | 2.171 | 3.22 | 0.14 | 7.1 | 92.9 | 0.0 | -0.63 | 0.30 | 0.70 | 0.83 | 2.87 | 13055 | 1560 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 6D9H | 7835 | 2023-04-20 | 2018-04-29 | 3.6 | 3.82 | — | 3.8 | 0.006 | 0.93 | 0.0 | 0.06 | 9.32 | 0.01 | 2.219 | 4.18 | 0.00 | 3.4 | 96.6 | 0.0 | -1.52 | 0.65 | 0.78 | 2.88 | 3.9 | 0.003 | 0.55 | 0.0 | 0.04 | 13.79 | 0.00 | 2.089 | 9.43 | 0.53 | 4.3 | 95.7 | 0.0 | 0.88 | 1.23 | 0.67 | 0.79 | 2.35 | 7023 | 892 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 6WYK | 21967 | 2023-04-19 | 2020-05-13 | 4.0 | 4.14 | — | 4.2 | 0.007 | 0.77 | 0.0 | 0.05 | 11.98 | 0.00 | 2.223 | 5.97 | 0.00 | 3.4 | 96.6 | 0.0 | -2.28 | 0.62 | 0.77 | — | 4.2 | 0.004 | 0.86 | 0.0 | 0.05 | 16.17 | 0.00 | 2.173 | 13.51 | 0.31 | 2.9 | 97.1 | 0.0 | 1.58 | 0.85 | 0.62 | 0.78 | — | 3083 | 415 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XUi | 33470 | 2023-04-29 | 2022-05-18 | 3.61 | 3.69 | — | 3.7 | 0.009 | 0.88 | 0.0 | 0.05 | 15.48 | 0.01 | 1.885 | 9.08 | 0.00 | 11.7 | 88.3 | 0.0 | -2.66 | 0.82 | 0.83 | 2.37 | 3.7 | 0.004 | 0.76 | 0.0 | 0.04 | 16.47 | 0.00 | 1.977 | 12.87 | 0.27 | 6.9 | 93.1 | 0.0 | -0.99 | 0.51 | 0.80 | 0.80 | 1.54 | 29610 | 3473 | 9 | 111 | 3 | 0 | 0 | logfile |
✔ | 6VK3 | 21224 | 2023-04-20 | 2020-01-18 | 3.7 | 3.81 | — | 3.8 | 0.006 | 0.93 | 0.0 | 0.06 | 14.84 | 0.01 | 2.013 | 12.45 | 0.00 | 5.1 | 94.8 | 0.1 | -2.61 | 0.68 | 0.80 | 1.94 | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 16.78 | 0.00 | 2.205 | 7.76 | 0.24 | 4.6 | 95.4 | 0.0 | 0.36 | 1.63 | 0.67 | 0.79 | 1.57 | 7784 | 954 | 2 | 0 | 7 | 0 | 0 | logfile |
✔ | 6LHV | 0900 | 2023-04-23 | 2019-12-10 | 4.59 | 4.86 | — | 4.4 | 0.010 | 1.38 | 0.0 | 0.05 | 5.37 | 0.00 | 1.654 | 9.63 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.70 | 0.59 | — | 4.4 | 0.010 | 1.38 | 0.0 | 0.05 | 6.64 | 0.00 | 2.051 | 53.25 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.58 | 0.84 | 0.81 | — | 8456 | 0 | 3 | 0 | 1707 | 0 | 0 | logfile |
✔ | 6D7L | 7823 | 2023-04-21 | 2018-04-25 | 4.0 | 4.10 | 3.93 | 3.9 | 0.004 | 0.86 | 0.0 | 0.05 | 7.65 | 0.01 | 2.273 | 4.18 | 0.00 | 8.5 | 91.5 | 0.0 | -3.90 | 0.73 | 0.72 | — | 3.9 | 0.004 | 0.88 | 0.0 | 0.04 | 15.24 | 0.00 | 2.179 | 17.08 | 0.98 | 11.4 | 88.6 | 0.0 | -0.47 | 3.01 | 0.76 | 0.75 | — | 9172 | 1152 | 4 | 0 | 0 | 0 | 0 | logfile |