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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 3JCN | 3285 | 2022-05-20 | 2016-01-04 | 4.6 | 4.58 | — | 4.4 | 0.007 | 1.08 | 9.0 | 0.10 | 12.71 | 0.01 | 1.344 | 3.08 | 0.18 | 6.9 | 91.6 | 1.5 | -3.44 | 0.75 | 0.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 147292 | 6123 | 57 | 4638 | 1 | 0 | 0 | logfile |
✘ | 6CP7 | 7549 | 2022-05-13 | 2018-03-13 | 4.1 | 4.11 | — | 4.1 | 0.008 | 1.42 | 0.0 | 0.07 | 13.16 | 0.01 | 1.577 | 14.57 | 3.98 | 6.6 | 92.9 | 0.5 | -4.99 | 0.50 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9164 | 1234 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 5A7U | 3079 | 2022-05-12 | 2015-07-10 | 4.8 | 3.82 | — | 4.6 | 0.020 | 3.41 | 3.0 | 0.25 | 21.78 | 0.08 | 2.651 | 30.77 | 25.00 | 24.0 | 72.0 | 4.0 | -6.05 | -0.01 | 0.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 455 | 27 | 1 | 0 | 1 | 0 | 231 | logfile |
✘ | 6U9W | 20703 | 2022-05-15 | 2019-09-09 | 3.3 | 3.46 | — | 3.5 | 0.011 | 1.00 | 0.0 | 0.08 | 15.04 | 0.00 | 1.975 | 2.65 | 0.70 | 3.7 | 96.3 | 0.0 | -2.76 | 0.70 | 0.81 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26919 | 1686 | 6 | 3 | 42 | 0 | 12885 | logfile |
✘ | 6UiW | 20789 | 2022-05-15 | 2019-10-01 | 2.7 | 3.37 | — | 3.1 | 0.010 | 0.99 | 0.0 | 0.05 | 14.23 | 0.01 | 1.838 | 6.63 | 1.10 | 3.1 | 96.9 | 0.0 | -3.44 | 0.71 | 0.81 | 4.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23617 | 3234 | 22 | 0 | 11 | 0 | 0 | logfile |
✘ | 6JLU | 9839 | 2022-05-17 | 2019-03-06 | 3.02 | 3.12 | — | 3.2 | 0.014 | 1.72 | 11.0 | 0.08 | 15.86 | 0.01 | 1.177 | 12.95 | 0.10 | 8.6 | 90.9 | 0.5 | -4.89 | 0.64 | 0.73 | 2.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 102777 | 9704 | 128 | 0 | 820 | 1 | 0 | logfile |
✘ | 6J6N | 0691 | 2022-05-15 | 2019-01-15 | 3.86 | 3.99 | — | 3.8 | 0.008 | 1.02 | 1.0 | 0.06 | 14.52 | 0.01 | 1.463 | 15.68 | 2.51 | 5.1 | 94.2 | 0.8 | -3.41 | 0.60 | 0.63 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 78937 | 8982 | 47 | 544 | 14 | 0 | 0 | logfile |
✘ | 6NC3 | 0434 | 2022-05-17 | 2018-12-10 | 4.5 | 5.02 | 4.53 | 4.5 | 0.019 | 1.79 | 0.0 | 0.11 | 10.64 | 0.01 | 2.381 | 1.18 | 0.15 | 3.1 | 96.5 | 0.4 | 0.08 | 0.77 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38904 | 4686 | 30 | 0 | 162 | 0 | 0 | logfile |
✘ | 6N4R | 0342 | 2022-05-13 | 2018-11-20 | 4.2 | 4.09 | 4.16 | 4.1 | 0.008 | 1.07 | 0.0 | 0.06 | 10.26 | 0.01 | 2.222 | 4.83 | 0.23 | 6.8 | 93.2 | 0.0 | -3.27 | 0.66 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15444 | 1942 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 6HLR | 0240 | 2022-05-16 | 2018-09-11 | 3.18 | 3.30 | — | 3.3 | 0.007 | 0.95 | 0.0 | 0.06 | 12.28 | 0.01 | 1.734 | 4.76 | 0.15 | 4.9 | 95.1 | 0.0 | -4.37 | 0.70 | 0.84 | 4.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32370 | 3881 | 21 | 73 | 8 | 0 | 0 | logfile |
✘ | 6DR2 | 7988 | 2022-05-17 | 2018-06-11 | 4.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 139084 | 8764 | 8 | 0 | 12 | 0 | 69544 | logfile |
✘ | 6GiQ | 0004 | 2022-05-17 | 2018-05-15 | 3.23 | 3.67 | 3.34 | 3.6 | 0.010 | 1.26 | 2.0 | 0.07 | 12.12 | 0.01 | 1.203 | 5.99 | 0.45 | 5.9 | 93.9 | 0.2 | -3.41 | 0.74 | 0.82 | 2.93 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44120 | 5439 | 42 | 0 | 57 | 0 | 0 | logfile |
✘ | 6J6G | 0686 | 2022-05-15 | 2019-01-15 | 3.2 | 3.37 | — | 3.2 | 0.007 | 0.94 | 0.0 | 0.06 | 14.13 | 0.01 | 1.463 | 15.59 | 3.03 | 4.6 | 94.9 | 0.5 | -3.38 | 0.67 | 0.71 | 2.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 79042 | 8981 | 47 | 550 | 14 | 0 | 0 | logfile |
✘ | 6UE7 | 20749 | 2022-05-13 | 2019-09-20 | 2.9 | 3.95 | — | 3.8 | 0.007 | 1.03 | 0.0 | 0.06 | 12.81 | 0.01 | 2.051 | 2.95 | 0.50 | 10.2 | 89.8 | 0.0 | -3.16 | 0.81 | 0.81 | 3.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11701 | 1571 | 11 | 0 | 16 | 0 | 0 | logfile |
✘ | 6DRA | 7991 | 2022-05-17 | 2018-06-11 | 3.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 139084 | 8764 | 8 | 0 | 12 | 0 | 69544 | logfile |
✘ | 6o2P | 0611 | 2022-05-13 | 2019-02-24 | 3.3 | 3.80 | — | 3.8 | 0.014 | 1.82 | 0.0 | 0.09 | 14.02 | 0.00 | 1.403 | 1.52 | 1.16 | 4.5 | 95.5 | 0.0 | -3.17 | 0.51 | 0.72 | 2.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9767 | 1179 | 3 | 0 | 29 | 0 | 0 | logfile |
✘ | 6DR0 | 7987 | 2022-05-17 | 2018-06-11 | 4.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 139988 | 8750 | 8 | 0 | 8 | 0 | 70013 | logfile |
✘ | 6DRC | 7994 | 2022-05-17 | 2018-06-11 | 3.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138860 | 8744 | 8 | 0 | 16 | 0 | 69384 | logfile |
✘ | 6JHN | 9826 | 2022-05-13 | 2019-02-18 | 4.5 | 7.49 | — | 4.4 | 0.010 | 1.23 | 0.0 | 0.06 | 16.52 | 0.01 | 2.114 | 19.30 | 1.44 | 13.9 | 85.8 | 0.3 | -4.27 | 0.85 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109488 | 14332 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 6J6H | 0687 | 2022-05-15 | 2019-01-15 | 3.6 | 3.74 | — | 3.6 | 0.008 | 0.97 | 2.0 | 0.06 | 14.36 | 0.01 | 1.463 | 16.43 | 2.68 | 4.4 | 95.1 | 0.5 | -3.20 | 0.62 | 0.67 | 1.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 76847 | 8644 | 47 | 551 | 14 | 0 | 0 | logfile |