Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6PCH	20300	2021-08-10	2019-06-17	2.9	3.23	—	3.1	0.003	0.33	0.0	0.02	12.54	0.00	1.216	3.89	2.23	7.9	92.0	0.1	-4.23	0.61	0.79	3.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72134	964	8	3015	1	0	0	logfile
✘	6PC7	20298	2021-08-10	2019-06-16	2.5	3.01	—	2.9	0.006	0.50	0.0	0.03	12.79	0.02	1.954	2.83	2.23	6.2	93.7	0.1	-3.93	0.66	0.85	3.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72146	964	8	3015	1	0	0	logfile
✘	7D20	30552	2021-08-08	2020-09-15	3.0	3.72	—	3.6	0.009	0.81	0.0	0.06	28.76	0.00	1.752	12.62	0.00	5.2	94.8	0.0	-3.29	0.78	0.78	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12836	914	11	272	0	0	0	logfile
✘	7D3S	30566	2021-08-07	2020-09-20	2.9	2.73	2.75	2.8	0.004	0.64	0.0	0.04	13.88	0.00	2.237	9.76	0.00	4.0	96.0	0.0	-2.28	0.56	0.75	3.07	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8338	1048	6	0	0	0	0	logfile
✘	7D46	30571	2021-08-09	2020-09-22	4.0	4.10	—	4.1	0.008	0.94	0.0	0.05	15.19	0.00	2.116	18.45	0.42	17.5	82.4	0.1	-5.10	0.77	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26636	3481	10	0	0	0	0	logfile
✘	6LT4	0967	2021-08-10	2020-01-21	4.5	4.86	—	4.8	0.006	0.93	0.0	0.05	15.21	0.00	1.863	24.98	1.54	7.7	92.3	0.0	-0.98	0.75	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	68432	8722	28	0	56	0	0	logfile
✘	7JT1	22466	2021-08-14	2020-08-16	3.3	3.84	3.70	3.5	0.007	0.99	0.0	0.08	13.88	0.01	2.234	12.94	1.20	10.8	87.1	2.0	-5.23	0.88	0.83	1.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	145600	5828	55	4659	0	0	0	logfile
✘	6LQV	0955	2021-08-11	2020-01-14	4.8	5.01	—	4.8	0.009	1.08	1.0	0.06	16.24	0.01	2.114	8.10	0.97	9.8	90.0	0.2	-4.30	0.71	0.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	181752	21006	60	1296	11	0	0	logfile
✘	7CRR	30457	2021-08-09	2020-08-14	3.48	3.61	—	3.5	0.007	0.74	0.0	0.04	27.70	0.00	2.037	12.45	1.56	10.2	89.8	0.0	-5.14	0.74	0.82	2.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14839	1002	11	336	4	0	0	logfile
✘	7CKX	30393	2021-08-08	2020-07-20	3.54	3.65	—	3.6	0.002	0.47	0.0	0.04	13.47	0.00	1.294	12.70	2.09	3.2	96.8	0.0	-3.07	0.59	0.71	1.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8112	1035	5	0	2	0	0	logfile
✘	6XZD	10659	2021-08-09	2020-02-04	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile
✘	7CUM	30472	2021-08-09	2020-08-23	3.52	3.83	—	3.8	0.006	1.04	3.0	0.07	14.65	0.01	1.183	10.83	0.34	7.1	92.9	0.0	-4.26	0.69	0.76	2.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22214	1358	4	0	19	0	10852	logfile
✘	7KZP	23085	2021-08-22	2020-12-10	3.1	3.43	—	3.4	0.013	1.47	2.0	0.07	15.82	0.01	1.936	3.39	0.59	8.6	90.8	0.6	-3.29	0.73	0.72	2.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	129805	8202	16	0	19	0	65343	logfile
✘	7JK9	22364	2021-08-12	2020-07-28	3.1	2.92	3.11	3.2	0.010	1.23	0.0	0.06	11.40	0.01	1.206	4.99	0.39	1.9	98.1	0.0	-0.20	0.44	0.80	3.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	197360	12640	80	0	120	0	95880	logfile
✘	6S3L	10093	2021-08-08	2019-06-25	3.2	3.35	3.21	3.3	0.010	0.93	0.0	0.05	15.45	0.01	2.050	15.45	2.72	5.8	93.6	0.5	-3.51	0.68	0.84	1.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13849	1768	11	0	0	0	0	logfile
✘	6M5U	30093	2021-08-08	2020-03-11	3.8	3.78	—	3.8	0.007	0.87	1.0	0.05	16.07	0.00	2.210	18.37	5.59	9.0	90.8	0.2	-3.03	0.62	0.81	1.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10549	1359	5	0	5	0	0	logfile
✘	6WDi	21637	2021-08-16	2020-03-31	4.0	4.30	4.78	4.1	0.006	0.98	0.0	0.08	13.16	0.01	2.280	9.82	0.49	12.5	85.9	1.6	-4.84	0.77	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	149628	5954	59	4807	0	0	0	logfile
✘	7B5D	12026	2021-08-08	2020-12-03	3.3	3.47	3.28	3.5	0.005	0.84	0.0	0.05	15.10	0.01	2.225	4.67	0.96	7.2	92.8	0.0	-3.54	0.68	0.80	2.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11462	1402	2	0	0	0	0	logfile
✘	6XBK	22118	2021-08-08	2020-06-06	3.24	3.69	3.22	3.7	0.016	1.71	1.0	0.20	13.50	0.01	2.219	5.59	0.09	5.5	94.5	0.0	-3.09	0.62	0.79	2.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10214	1304	6	0	1	0	0	logfile
✘	7JSX	22462	2021-08-11	2020-08-16	2.06	2.05	—	2.1	0.022	1.67	2.0	0.11	11.97	0.01	2.201	6.73	1.26	3.9	96.1	0.0	-1.03	0.74	0.76	5.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38813	4832	40	0	0	1141	0	logfile

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