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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6HYD | 0308 | 2023-04-22 | 2018-10-19 | 3.9 | 4.01 | — | 4.0 | 0.004 | 0.85 | 0.0 | 0.05 | 9.33 | 0.01 | 2.319 | 2.63 | 0.24 | 5.7 | 94.0 | 0.3 | -6.69 | 0.74 | 0.77 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12168 | 1543 | 1 | 0 | 31 | 0 | 0 | logfile |
✘ | 7WoC | 32648 | 2023-04-20 | 2022-01-21 | 3.35 | 3.49 | — | 3.4 | 0.002 | 0.48 | 0.0 | 0.04 | 9.56 | 0.00 | 2.288 | 6.75 | 4.60 | 6.3 | 93.7 | 0.0 | -4.80 | 0.72 | 0.76 | 2.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4746 | 610 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 7ZUB | 14971 | 2023-04-28 | 2022-05-12 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28082 | 1722 | 7 | 0 | 7 | 0 | 14035 | logfile |
✘ | 6TM2 | 10517 | 2023-04-20 | 2019-12-03 | 2.95 | 3.12 | — | 3.1 | 0.008 | 1.01 | 0.0 | 0.06 | 9.31 | 0.01 | 2.181 | 3.02 | 0.10 | 11.3 | 88.7 | 0.0 | -4.14 | 0.44 | 0.47 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 55254 | 7230 | 60 | 0 | 54 | 138 | 0 | logfile |
✘ | 7QiC | 13987 | 2023-04-20 | 2021-12-14 | 4.1 | 4.27 | 4.00 | 4.2 | 0.003 | 0.65 | 0.0 | 0.04 | 12.83 | 0.00 | 2.221 | 13.06 | 0.20 | 7.7 | 92.3 | 0.0 | -0.78 | 0.64 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4841 | 639 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 7BSP | 30163 | 2023-04-22 | 2020-03-31 | 4.0 | 4.12 | — | 4.0 | 0.005 | 0.66 | 0.0 | 0.04 | 13.90 | 0.01 | 1.928 | 53.93 | 0.00 | 14.6 | 85.4 | 0.0 | -7.27 | 0.68 | 0.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11010 | 1352 | 5 | 0 | 5 | 0 | 0 | logfile |
✘ | 7P13 | 13154 | 2023-04-22 | 2021-07-01 | 2.29 | 1.96 | 2.28 | 1.7 | 0.016 | 1.06 | 0.0 | 0.07 | 14.07 | 0.01 | 2.430 | 5.24 | 0.00 | 3.3 | 96.7 | 0.0 | 2.06 | 0.82 | 0.87 | 4.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13727 | 1743 | 7 | 0 | 0 | 0 | 154 | logfile |
✘ | 7YiM | 33861 | 2023-04-20 | 2022-07-17 | 2.6 | 2.93 | 2.77 | 2.9 | 0.013 | 1.14 | 0.0 | 0.07 | 15.89 | 0.01 | 2.272 | 6.72 | 0.78 | 4.9 | 95.1 | 0.0 | -4.17 | 0.67 | 0.68 | 1.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4657 | 592 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 5WEL | 8820 | 2023-04-28 | 2017-07-10 | 4.4 | 4.52 | — | 4.4 | 0.006 | 0.98 | 0.0 | 0.64 | 9.59 | 0.01 | 2.206 | 6.86 | 0.61 | 6.5 | 93.4 | 0.1 | -4.07 | 0.69 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27638 | 3484 | 8 | 0 | 6 | 0 | 0 | logfile |
✘ | 7ZL1 | 14774 | 2023-04-28 | 2022-04-13 | 2.5 | 2.06 | 2.45 | 2.4 | 0.007 | 0.88 | 0.0 | 0.06 | 14.64 | 0.01 | 2.033 | 2.59 | 0.65 | 5.7 | 93.3 | 1.0 | -0.02 | 0.73 | 0.86 | 6.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27257 | 1720 | 24 | 0 | 8 | 379 | 13574 | logfile |
✘ | 6RKV | 4912 | 2023-04-23 | 2019-04-30 | 4.6 | 4.86 | — | 4.5 | 0.002 | 0.53 | 0.0 | 0.04 | 12.80 | 0.00 | 2.207 | 7.23 | 0.00 | 5.3 | 94.7 | 0.0 | -1.73 | 0.87 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15460 | 1784 | 8 | 64 | 0 | 0 | 0 | logfile |
✘ | 6ZDG | 11173 | 2023-04-28 | 2020-06-14 | 4.7 | 4.97 | — | 4.8 | 0.004 | 0.50 | 0.0 | 0.04 | 8.99 | 0.00 | 1.891 | 7.24 | 2.41 | 3.9 | 96.1 | 0.0 | 0.05 | 0.71 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28548 | 1884 | 12 | 0 | 3 | 0 | 13995 | logfile |
✘ | 7RL5 | 24516 | 2023-04-27 | 2021-07-23 | 3.8 | 3.61 | — | 3.8 | 0.013 | 2.04 | 24.0 | 0.11 | 16.71 | 0.02 | 0.524 | 3.05 | 2.05 | 3.3 | 96.3 | 0.4 | -1.86 | 0.40 | 0.52 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 106032 | 6708 | 24 | 0 | 24 | 0 | 52716 | logfile |
✘ | 7CoY | 30420 | 2023-04-21 | 2020-08-05 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57966 | 6096 | 66 | 0 | 279 | 84 | 0 | logfile |
✘ | 6M32 | 30069 | 2023-04-26 | 2020-03-02 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23566 | 2523 | 13 | 0 | 67 | 0 | 0 | logfile |
✘ | 6VDK | 21151 | 2023-04-22 | 2019-12-27 | 4.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12309 | 1274 | 14 | 104 | 6 | 0 | 0 | logfile |
✘ | 6ND1 | 0440 | 2023-04-21 | 2018-12-13 | 4.1 | 4.15 | — | 4.1 | 0.009 | 1.23 | 14.0 | 0.08 | 16.24 | 0.01 | 2.249 | 7.63 | 0.10 | 3.7 | 96.2 | 0.2 | -3.89 | 0.60 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9186 | 1179 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ND4 | 12275 | 2023-04-29 | 2021-01-30 | 3.6 | 3.31 | — | 3.2 | 0.004 | 0.62 | 3.0 | 0.05 | 11.02 | 0.00 | 2.233 | 3.79 | 0.28 | 4.1 | 95.6 | 0.2 | -0.12 | 0.74 | 0.79 | 2.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29848 | 3729 | 30 | 0 | 71 | 0 | 0 | logfile |
✘ | 6UKN | 20807 | 2023-04-20 | 2019-10-05 | 3.65 | 3.85 | — | 3.8 | 0.005 | 0.83 | 0.0 | 0.05 | 13.77 | 0.01 | 2.280 | 4.10 | 0.47 | 7.7 | 92.3 | 0.0 | -2.59 | 0.70 | 0.82 | 2.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4109 | 536 | 4 | 0 | 8 | 0 | 0 | logfile |
✘ | 7MYo | 24082 | 2023-04-21 | 2021-05-21 | 2.92 | 3.27 | 2.93 | 3.3 | 0.005 | 0.89 | 0.0 | 0.05 | 15.08 | 0.01 | 2.225 | 9.92 | 0.59 | 5.9 | 94.1 | 0.0 | -1.97 | 0.57 | 0.66 | 0.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10634 | 1278 | 2 | 0 | 1 | 0 | 0 | logfile |