Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6TQF	10550	2021-08-08	2019-12-16	3.5	3.81	—	3.7	0.009	0.98	0.0	0.06	15.82	0.01	2.092	2.95	0.09	5.2	94.8	0.0	-6.53	0.74	0.90	2.73	3.7	0.003	0.63	0.0	0.04	15.94	0.00	1.991	2.57	0.09	3.8	96.2	0.0	-3.49	0.37	0.74	0.90	2.74	10426	1268	4	0	14	0	0	logfile
✔	7BSU	30167	2021-08-07	2020-03-31	3.2	3.35	—	3.3	0.014	0.76	0.0	0.04	17.99	0.01	1.626	30.96	7.59	7.6	92.4	0.0	-6.52	0.59	0.85	3.64	3.3	0.004	0.74	0.0	0.04	17.08	0.00	1.960	8.46	0.20	5.0	95.0	0.0	-1.60	0.96	0.67	0.89	3.61	9326	1138	4	0	7	0	0	logfile
✔	6TQH	10551	2021-08-11	2019-12-16	3.4	3.87	3.27	3.6	0.081	1.81	0.0	0.06	15.43	0.00	1.341	12.32	1.45	12.5	87.5	0.0	-6.51	0.82	0.80	2.62	3.6	0.003	0.65	0.0	0.05	14.70	0.00	1.983	7.79	0.10	4.7	95.3	0.0	-0.62	1.54	0.82	0.83	2.51	39677	2576	6	0	6	0	19793	logfile
✔	6Z7Q	11112	2021-08-08	2020-06-01	3.8	4.10	3.58	4.0	0.006	0.77	0.0	0.05	14.47	0.00	2.176	20.74	0.00	28.6	70.7	0.7	-6.49	0.73	0.82	1.75	4.0	0.010	1.21	1.0	0.05	17.12	0.01	2.021	21.89	0.64	16.8	83.1	0.0	-4.47	1.21	0.76	0.83	1.14	16665	2080	5	0	0	0	0	logfile
✔	6S8H	10122	2021-08-07	2019-07-10	3.7	3.89	—	3.8	0.012	1.65	0.0	0.26	17.59	0.01	2.300	5.75	0.12	9.9	89.8	0.2	-6.48	0.67	0.83	0.98	3.8	0.003	0.97	0.0	0.09	18.34	0.00	2.165	9.37	0.62	7.3	92.6	0.1	-1.73	0.69	0.68	0.83	1.14	7818	959	6	0	7	0	0	logfile
✔	7JM3	22384	2021-08-22	2020-07-30	3.4	3.43	—	3.4	0.013	0.96	0.0	0.06	15.30	0.01	0.521	21.42	0.00	10.1	89.5	0.4	-6.47	0.55	0.72	1.95	3.4	0.006	0.76	0.0	0.04	17.55	0.00	1.657	12.63	0.44	7.9	91.9	0.3	-1.38	1.26	0.59	0.81	2.59	235260	15060	60	0	0	0	118860	logfile
✔	6ZH3	11212	2021-08-11	2020-06-20	3.2	3.36	3.25	3.3	0.008	0.98	0.0	0.05	14.14	0.00	2.307	3.61	0.64	2.4	96.4	1.2	-6.47	0.73	0.80	1.70	3.3	0.003	0.70	0.0	0.04	17.76	0.00	2.114	10.53	0.28	3.0	96.3	0.6	1.66	1.31	0.78	0.85	0.99	49716	6120	36	0	0	0	0	logfile
✔	5o3T	3743	2021-08-08	2017-05-24	3.4	3.55	3.25	4.0	0.007	0.92	0.0	0.06	10.15	0.01	2.301	14.44	1.56	14.1	85.9	0.0	-6.47	0.53	0.63	2.13	3.5	0.003	0.64	0.0	0.05	13.10	0.00	1.936	10.30	0.16	11.3	88.7	0.0	-4.89	1.88	0.51	0.71	3.12	11360	730	10	0	0	0	5790	logfile
✔	6X2L	22011	2021-08-07	2020-05-20	2.85	2.95	—	2.9	0.009	0.96	0.0	0.06	13.68	0.01	2.078	2.94	0.00	2.5	97.5	0.0	-6.46	0.64	0.88	2.92	2.9	0.003	0.66	0.0	0.04	15.73	0.00	2.265	5.27	1.16	2.0	98.0	0.0	2.05	1.77	0.62	0.88	2.09	9396	1233	3	0	0	0	0	logfile
✔	6NCV	0438	2021-08-08	2018-12-12	3.7	3.98	—	3.9	0.008	0.94	0.0	0.05	17.27	0.01	2.398	4.87	2.74	9.1	90.9	0.0	-6.46	0.73	0.84	0.57	3.9	0.005	0.75	0.0	0.04	18.41	0.00	2.057	7.71	0.72	6.6	93.4	0.0	-0.54	1.68	0.75	0.85	1.23	15456	1911	21	0	0	0	0	logfile
✔	7C1D	30269	2021-08-07	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	17.40	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.004	0.69	0.0	0.05	14.89	0.00	2.232	21.81	0.52	20.1	79.9	0.0	-4.46	2.84	0.42	0.76	2.27	2034	306	6	0	0	0	0	logfile
✔	6Kio	9996	2021-08-08	2019-07-19	3.94	4.22	—	3.9	0.035	3.43	48.0	0.22	17.77	0.04	2.231	10.54	8.39	18.6	74.1	7.3	-6.45	0.56	0.66	1.26	3.8	0.004	0.73	0.0	0.04	17.35	0.00	2.004	11.47	0.36	7.6	92.0	0.4	-1.28	2.14	0.65	0.78	1.31	15091	968	3	0	0	0	7442	logfile
✔	7ALW	11820	2021-08-11	2020-10-07	3.7	3.77	3.62	3.7	0.010	0.96	0.0	0.05	15.64	0.00	2.150	15.11	0.98	17.3	82.4	0.3	-6.45	0.81	0.86	2.68	3.7	0.003	0.82	0.0	0.04	17.68	0.00	2.156	10.05	0.60	10.0	90.0	0.0	-2.18	2.14	0.78	0.83	1.25	50148	6192	18	0	0	0	0	logfile
✔	5iRX	8117	2021-08-08	2016-03-14	2.95	3.39	2.91	3.3	0.043	1.55	0.0	0.26	14.01	0.01	1.744	9.65	0.00	10.7	89.2	0.1	-6.45	0.67	0.77	3.80	3.4	0.005	1.27	0.0	0.15	17.12	0.00	1.884	16.12	1.06	9.5	90.5	0.0	-2.57	0.52	0.65	0.83	3.10	13162	1726	12	0	20	0	0	logfile
✔	6LZ3	30022	2021-08-08	2020-02-18	3.2	3.37	3.26	3.3	0.007	1.18	0.0	0.06	16.49	0.01	2.201	4.65	3.86	8.7	90.9	0.4	-6.45	0.80	0.81	2.16	3.3	0.008	0.92	1.0	0.04	16.47	0.01	2.079	11.66	0.18	9.3	90.7	0.0	-2.36	0.70	0.81	0.84	2.73	15968	1944	8	0	4	0	0	logfile
✔	5JUo	6648	2021-08-16	2016-05-10	4.0	4.65	—	3.6	0.021	1.30	0.0	0.15	17.54	0.01	1.298	41.10	10.58	20.9	71.5	7.6	-6.44	0.72	0.53	—	3.6	0.007	1.01	3.0	0.05	18.94	0.01	1.839	40.67	0.54	15.8	83.3	0.9	-4.14	0.93	0.81	0.70	—	215363	12391	84	5568	2	0	0	logfile
✔	5JUo	6643	2021-08-16	2016-05-10	4.0	4.68	—	3.8	0.021	1.30	0.0	0.15	17.54	0.01	1.298	41.10	10.58	20.9	71.5	7.6	-6.44	0.74	0.52	—	3.6	0.007	0.89	4.0	0.04	17.70	0.01	1.751	26.86	0.71	14.3	84.6	1.0	-4.31	0.60	0.82	0.69	—	215363	12391	84	5568	2	0	0	logfile
✔	5JUT	6646	2021-08-16	2016-05-10	4.0	4.62	—	3.9	0.019	1.26	2.0	0.14	17.34	0.01	2.191	39.49	10.31	20.7	71.5	7.8	-6.42	0.78	0.60	—	3.7	0.005	0.85	2.0	0.04	17.89	0.01	1.582	30.38	0.28	12.7	86.1	1.1	-3.83	1.05	0.85	0.76	—	215222	12374	84	5568	2	0	0	logfile
✔	6VXH	21437	2021-08-07	2020-02-21	4.0	4.27	—	4.2	0.013	1.08	0.0	0.28	15.64	0.01	2.245	5.74	0.31	9.9	89.9	0.2	-6.42	0.65	0.82	—	4.2	0.005	0.96	0.0	0.10	17.05	0.00	2.162	14.32	1.14	10.7	89.3	0.0	-2.77	1.30	0.66	0.83	—	8879	1130	4	0	3	0	0	logfile
✔	6A70	6991	2021-08-08	2018-06-29	3.6	4.21	—	3.7	0.009	1.20	0.0	0.06	12.37	0.01	2.200	4.77	1.28	9.2	90.7	0.1	-6.41	0.52	0.57	0.70	3.8	0.003	0.83	0.0	0.04	14.87	0.00	2.140	9.92	0.23	5.7	94.3	0.0	-1.02	1.71	0.58	0.72	0.77	15142	2086	4	0	0	0	0	logfile

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