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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6YKP | 10829 | 2022-12-12 | 2020-04-06 | 2.98 | 3.28 | 3.05 | 3.3 | 0.014 | 1.23 | 0.0 | 0.07 | 10.75 | 0.01 | 2.350 | 2.77 | 0.09 | 3.0 | 97.0 | 0.1 | -6.56 | 0.59 | 0.85 | 4.85 | 3.3 | 0.004 | 0.75 | 0.0 | 0.04 | 15.71 | 0.00 | 2.245 | 7.57 | 1.39 | 2.4 | 97.6 | 0.1 | 0.77 | 1.10 | 0.60 | 0.86 | 3.22 | 10190 | 1326 | 9 | 0 | 0 | 7 | 0 | logfile |
✔ | 7L1K | 23110 | 2022-12-12 | 2020-12-14 | 3.16 | 3.38 | 3.16 | 3.4 | 0.011 | 1.29 | 5.0 | 0.27 | 14.84 | 0.01 | 2.317 | 5.62 | 0.75 | 9.8 | 89.9 | 0.3 | -6.55 | 0.73 | 0.88 | 3.48 | 3.4 | 0.002 | 0.65 | 0.0 | 0.04 | 15.75 | 0.00 | 2.153 | 7.91 | 0.38 | 7.5 | 92.5 | 0.0 | -1.67 | 0.95 | 0.76 | 0.89 | 2.50 | 7217 | 883 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6JCW | 9799 | 2022-12-16 | 2019-01-30 | 3.04 | 3.78 | — | 3.4 | 0.007 | 0.88 | 0.0 | 0.05 | 15.38 | 0.01 | 2.168 | 1.88 | 0.35 | 6.1 | 93.9 | 0.0 | -6.55 | 0.88 | 0.88 | 4.46 | 3.5 | 0.003 | 0.66 | 0.0 | 0.04 | 16.38 | 0.00 | 2.172 | 4.28 | 0.03 | 3.2 | 96.8 | 0.0 | 0.03 | 1.31 | 0.86 | 0.89 | 3.61 | 30888 | 3912 | 36 | 0 | 24 | 100 | 0 | logfile |
✔ | 6o6R | 0636 | 2022-12-15 | 2019-03-07 | 3.2 | 3.33 | — | 3.3 | 0.010 | 1.01 | 0.0 | 0.06 | 15.85 | 0.01 | 2.114 | 7.37 | 0.00 | 7.6 | 92.4 | 0.0 | -6.54 | 0.61 | 0.79 | 2.48 | 3.3 | 0.003 | 0.65 | 0.0 | 0.04 | 16.68 | 0.00 | 2.190 | 10.99 | 0.24 | 7.6 | 92.4 | 0.0 | -1.23 | 0.56 | 0.61 | 0.81 | 2.55 | 27744 | 3332 | 8 | 0 | 28 | 0 | 0 | logfile |
✔ | 7V4C | 31707 | 2022-12-11 | 2021-08-12 | 3.3 | 2.93 | — | 3.4 | 0.008 | 0.75 | 0.0 | 0.06 | 12.47 | 0.00 | 2.305 | 12.50 | 0.00 | 20.0 | 80.0 | 0.0 | -6.54 | 0.40 | 0.83 | 2.37 | 3.4 | 0.003 | 0.61 | 0.0 | 0.05 | 17.76 | 0.00 | 2.159 | 3.79 | 0.76 | 7.8 | 92.2 | 0.0 | -4.65 | 1.18 | 0.39 | 0.82 | 3.35 | 1287 | 186 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GCT | 4386 | 2022-12-12 | 2018-04-19 | 3.85 | 3.94 | 3.80 | 3.9 | 0.012 | 1.40 | 0.0 | 0.07 | 14.50 | 0.01 | 2.330 | 6.80 | 5.57 | 5.8 | 93.9 | 0.2 | -6.53 | 0.67 | 0.83 | 1.60 | 3.9 | 0.006 | 1.07 | 0.0 | 0.05 | 15.06 | 0.00 | 2.171 | 16.07 | 0.88 | 5.3 | 94.7 | 0.0 | -2.34 | 0.72 | 0.64 | 0.83 | 1.87 | 9672 | 1299 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TQF | 10550 | 2022-12-12 | 2019-12-16 | 3.5 | 3.81 | — | 3.7 | 0.009 | 0.96 | 0.0 | 0.06 | 15.62 | 0.01 | 2.092 | 3.00 | 0.09 | 5.2 | 94.8 | 0.0 | -6.53 | 0.74 | 0.90 | 2.73 | 3.7 | 0.003 | 0.61 | 0.0 | 0.04 | 15.80 | 0.00 | 1.946 | 2.57 | 0.09 | 3.9 | 96.1 | 0.0 | -3.90 | 0.35 | 0.74 | 0.90 | 2.92 | 10426 | 1268 | 4 | 0 | 14 | 0 | 0 | logfile |
✔ | 8GoF | 34177 | 2022-12-11 | 2022-08-24 | 3.0 | 2.97 | 3.06 | 3.1 | 0.006 | 0.80 | 0.0 | 0.05 | 12.71 | 0.01 | 2.269 | 7.05 | 0.00 | 2.5 | 97.5 | 0.0 | -6.52 | 0.44 | 0.81 | 3.59 | 3.1 | 0.003 | 0.56 | 0.0 | 0.04 | 14.48 | 0.00 | 2.245 | 8.70 | 0.57 | 2.0 | 98.0 | 0.0 | 1.14 | 1.49 | 0.44 | 0.82 | 2.90 | 3299 | 407 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7BSU | 30167 | 2022-12-12 | 2020-03-31 | 3.2 | 3.35 | — | 3.3 | 0.006 | 0.60 | 0.0 | 0.04 | 18.02 | 0.01 | 1.626 | 31.07 | 7.59 | 7.6 | 92.4 | 0.0 | -6.52 | 0.59 | 0.85 | 3.64 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 17.07 | 0.00 | 1.996 | 8.41 | 0.20 | 3.9 | 96.1 | 0.0 | -1.66 | 0.96 | 0.64 | 0.88 | 3.26 | 9325 | 1138 | 4 | 0 | 7 | 0 | 0 | logfile |
✔ | 6TQH | 10551 | 2022-12-20 | 2019-12-16 | 3.4 | 3.87 | 3.27 | 3.6 | 0.013 | 0.92 | 0.0 | 0.06 | 13.91 | 0.00 | 1.729 | 12.85 | 1.45 | 12.5 | 87.5 | 0.0 | -6.51 | 0.82 | 0.80 | 2.62 | 3.6 | 0.002 | 0.62 | 0.0 | 0.05 | 14.52 | 0.00 | 1.940 | 8.65 | 0.14 | 4.8 | 95.2 | 0.0 | -0.86 | 1.51 | 0.81 | 0.83 | 2.66 | 39677 | 2576 | 6 | 0 | 6 | 0 | 19793 | logfile |
✔ | 7U15 | 26278 | 2022-12-11 | 2022-02-19 | 3.0 | 3.14 | — | 3.3 | 0.006 | 1.18 | 0.0 | 0.12 | 17.37 | 0.01 | 1.886 | 12.16 | 3.44 | 3.8 | 96.2 | 0.0 | -6.51 | 0.26 | 0.64 | 1.55 | 3.2 | 0.003 | 0.74 | 0.0 | 0.11 | 17.44 | 0.00 | 1.928 | 11.58 | 3.17 | 16.8 | 83.2 | 0.0 | -5.23 | 1.48 | 0.27 | 0.70 | 2.64 | 6684 | 405 | 6 | 0 | 12 | 0 | 3255 | logfile |
✔ | 6Z7Q | 11112 | 2022-12-13 | 2020-06-01 | 3.8 | 4.10 | 3.58 | 4.0 | 0.006 | 0.77 | 0.0 | 0.05 | 14.47 | 0.00 | 2.176 | 21.13 | 0.00 | 28.6 | 70.7 | 0.7 | -6.49 | 0.73 | 0.82 | 1.75 | 4.0 | 0.005 | 0.90 | 0.0 | 0.05 | 16.79 | 0.00 | 2.164 | 20.65 | 0.80 | 17.3 | 82.7 | 0.0 | -4.36 | 1.19 | 0.75 | 0.83 | 1.11 | 16665 | 2080 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6S8H | 10122 | 2022-12-11 | 2019-07-10 | 3.7 | 3.89 | — | 3.8 | 0.011 | 1.64 | 0.0 | 0.26 | 17.14 | 0.01 | 2.300 | 5.75 | 0.12 | 9.9 | 89.8 | 0.2 | -6.48 | 0.67 | 0.83 | 0.98 | 3.8 | 0.004 | 0.98 | 0.0 | 0.09 | 18.00 | 0.00 | 2.087 | 11.06 | 0.62 | 8.4 | 91.5 | 0.1 | -2.12 | 0.65 | 0.67 | 0.84 | 0.83 | 7818 | 959 | 6 | 0 | 7 | 0 | 0 | logfile |
✔ | 5o3T | 3743 | 2022-12-12 | 2017-05-24 | 3.4 | 3.55 | 3.25 | 4.0 | 0.007 | 0.92 | 0.0 | 0.06 | 10.15 | 0.01 | 2.301 | 15.23 | 1.56 | 14.1 | 85.9 | 0.0 | -6.47 | 0.53 | 0.63 | 2.13 | 3.5 | 0.003 | 0.64 | 0.0 | 0.05 | 12.81 | 0.00 | 2.146 | 10.56 | 0.16 | 10.4 | 89.6 | 0.0 | -4.94 | 1.53 | 0.50 | 0.71 | 3.01 | 11360 | 730 | 10 | 0 | 0 | 0 | 5790 | logfile |
✔ | 6ZH3 | 11212 | 2022-12-22 | 2020-06-20 | 3.2 | 3.36 | 3.25 | 3.3 | 0.008 | 0.98 | 0.0 | 0.05 | 14.14 | 0.00 | 2.307 | 3.61 | 0.64 | 2.4 | 96.4 | 1.2 | -6.47 | 0.73 | 0.80 | 1.70 | 3.3 | 0.004 | 0.70 | 0.0 | 0.04 | 17.77 | 0.00 | 2.144 | 11.18 | 0.53 | 3.1 | 96.3 | 0.6 | 1.26 | 1.28 | 0.77 | 0.85 | 0.92 | 49716 | 6120 | 36 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NCV | 0438 | 2022-12-13 | 2018-12-12 | 3.7 | 3.98 | — | 3.9 | 0.008 | 0.94 | 0.0 | 0.05 | 17.27 | 0.01 | 2.398 | 4.87 | 2.74 | 9.1 | 90.9 | 0.0 | -6.46 | 0.73 | 0.84 | 0.57 | 3.9 | 0.004 | 0.73 | 0.0 | 0.04 | 18.50 | 0.00 | 2.089 | 7.10 | 0.98 | 6.2 | 93.8 | 0.0 | -0.22 | 1.69 | 0.74 | 0.85 | 1.18 | 15456 | 1911 | 21 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X2L | 22011 | 2022-12-12 | 2020-05-20 | 2.85 | 2.95 | — | 2.9 | 0.009 | 0.96 | 0.0 | 0.06 | 13.68 | 0.01 | 2.078 | 2.99 | 0.00 | 2.5 | 97.5 | 0.0 | -6.46 | 0.64 | 0.88 | 2.92 | 2.9 | 0.003 | 0.64 | 0.0 | 0.04 | 15.84 | 0.00 | 2.284 | 5.83 | 1.74 | 2.3 | 97.7 | 0.0 | 1.92 | 1.01 | 0.61 | 0.89 | 2.26 | 9396 | 1233 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7C1D | 30269 | 2022-12-11 | 2020-05-03 | 3.8 | 4.18 | — | 4.3 | 0.004 | 0.71 | 0.0 | 0.05 | 13.99 | 0.00 | 2.367 | 18.87 | 0.00 | 20.4 | 79.6 | 0.0 | -6.46 | 0.34 | 0.74 | 3.47 | 6.5 | 0.004 | 0.69 | 0.0 | 0.05 | 14.90 | 0.00 | 2.239 | 18.63 | 0.52 | 24.5 | 75.5 | 0.0 | -4.57 | 2.82 | 0.39 | 0.75 | 2.42 | 2034 | 306 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 5iRX | 8117 | 2022-12-13 | 2016-03-14 | 2.95 | 3.39 | 2.91 | 3.3 | 0.014 | 1.44 | 0.0 | 0.07 | 15.36 | 0.01 | 1.744 | 9.65 | 0.00 | 10.7 | 89.2 | 0.1 | -6.45 | 0.67 | 0.77 | 3.80 | 3.4 | 0.004 | 0.69 | 0.0 | 0.04 | 16.93 | 0.00 | 2.250 | 7.69 | 1.54 | 8.5 | 91.5 | 0.0 | -1.10 | 0.67 | 0.62 | 0.82 | 2.03 | 13162 | 1726 | 12 | 0 | 20 | 0 | 0 | logfile |
✔ | 7ALW | 11820 | 2022-12-22 | 2020-10-07 | 3.7 | 3.77 | 3.62 | 3.7 | 0.010 | 0.96 | 0.0 | 0.05 | 15.64 | 0.00 | 2.150 | 15.88 | 0.98 | 17.3 | 82.4 | 0.3 | -6.45 | 0.81 | 0.86 | 2.68 | 3.7 | 0.003 | 0.78 | 0.0 | 0.04 | 17.72 | 0.00 | 2.181 | 11.44 | 0.49 | 10.1 | 89.8 | 0.2 | -2.13 | 1.03 | 0.79 | 0.84 | 1.26 | 50148 | 6192 | 18 | 0 | 0 | 0 | 0 | logfile |