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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6YKP | 10829 | 2023-08-11 | 2020-04-06 | 2.98 | 3.28 | 3.05 | 3.3 | 0.014 | 1.23 | 0.0 | 0.07 | 10.75 | 0.01 | 2.350 | 2.77 | 0.09 | 3.0 | 97.0 | 0.1 | -6.56 | 0.59 | 0.85 | 4.85 | 3.3 | 0.003 | 0.72 | 0.0 | 0.04 | 15.78 | 0.00 | 2.237 | 7.57 | 1.67 | 2.1 | 97.8 | 0.1 | 0.88 | 1.11 | 0.60 | 0.86 | 2.92 | 10190 | 1326 | 9 | 0 | 0 | 7 | 0 | logfile |
✔ | 7L1K | 23110 | 2023-08-10 | 2020-12-14 | 3.16 | 3.38 | 3.16 | 3.4 | 0.011 | 1.35 | 5.0 | 0.27 | 15.11 | 0.01 | 2.317 | 5.62 | 0.75 | 9.8 | 89.9 | 0.3 | -6.55 | 0.73 | 0.88 | 3.48 | 3.4 | 0.003 | 0.67 | 0.0 | 0.04 | 16.17 | 0.00 | 2.218 | 7.64 | 0.38 | 7.8 | 92.2 | 0.0 | -1.95 | 0.95 | 0.75 | 0.89 | 2.69 | 7217 | 883 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6JCW | 9799 | 2023-08-21 | 2019-01-30 | 3.04 | 3.78 | — | 3.4 | 0.007 | 0.88 | 0.0 | 0.05 | 15.38 | 0.01 | 2.168 | 1.88 | 0.35 | 6.1 | 93.9 | 0.0 | -6.55 | 0.88 | 0.88 | 4.46 | 3.5 | 0.004 | 0.68 | 0.0 | 0.04 | 16.33 | 0.00 | 2.162 | 4.95 | 0.03 | 3.5 | 96.5 | 0.0 | -0.07 | 1.31 | 0.86 | 0.89 | 3.75 | 30888 | 3912 | 36 | 0 | 24 | 100 | 0 | logfile |
✔ | 6o6R | 0636 | 2023-08-19 | 2019-03-07 | 3.2 | 3.33 | — | 3.3 | 0.010 | 1.01 | 0.0 | 0.06 | 15.85 | 0.01 | 2.114 | 7.37 | 0.00 | 7.6 | 92.4 | 0.0 | -6.54 | 0.61 | 0.79 | 2.48 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 16.63 | 0.00 | 2.224 | 11.11 | 0.13 | 8.0 | 92.0 | 0.0 | -0.90 | 0.55 | 0.61 | 0.81 | 2.15 | 27744 | 3332 | 8 | 0 | 28 | 0 | 0 | logfile |
✔ | 7V4C | 31707 | 2023-08-09 | 2021-08-12 | 3.3 | 2.93 | — | 3.4 | 0.008 | 0.75 | 0.0 | 0.06 | 12.47 | 0.00 | 2.305 | 12.50 | 0.00 | 20.0 | 80.0 | 0.0 | -6.54 | 0.40 | 0.83 | 2.37 | 3.4 | 0.002 | 0.61 | 0.0 | 0.05 | 17.20 | 0.00 | 2.152 | 4.55 | 1.52 | 6.1 | 93.9 | 0.0 | -4.30 | 2.19 | 0.40 | 0.82 | 3.23 | 1287 | 186 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GCT | 4386 | 2023-08-11 | 2018-04-19 | 3.85 | 3.94 | 3.80 | 3.9 | 0.012 | 1.40 | 0.0 | 0.07 | 14.50 | 0.01 | 2.330 | 6.80 | 5.57 | 5.8 | 93.9 | 0.2 | -6.53 | 0.67 | 0.83 | 1.60 | 3.9 | 0.006 | 1.07 | 0.0 | 0.05 | 15.31 | 0.00 | 2.130 | 16.47 | 0.98 | 5.8 | 94.2 | 0.0 | -2.26 | 0.72 | 0.65 | 0.84 | 1.77 | 9672 | 1299 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TQF | 10550 | 2023-08-11 | 2019-12-16 | 3.5 | 3.81 | — | 3.7 | 0.007 | 0.99 | 0.0 | 0.05 | 15.75 | 0.01 | 2.092 | 3.00 | 0.09 | 5.2 | 94.8 | 0.0 | -6.53 | 0.74 | 0.90 | 2.73 | 3.7 | 0.003 | 0.59 | 0.0 | 0.04 | 15.83 | 0.00 | 1.970 | 2.62 | 0.00 | 3.6 | 96.4 | 0.0 | -3.38 | 0.38 | 0.74 | 0.90 | 2.77 | 10426 | 1268 | 4 | 0 | 14 | 0 | 0 | logfile |
✔ | 7BSU | 30167 | 2023-08-11 | 2020-03-31 | 3.2 | 3.35 | — | 3.3 | 0.006 | 0.60 | 0.0 | 0.04 | 17.87 | 0.01 | 1.626 | 31.07 | 7.59 | 7.6 | 92.4 | 0.0 | -6.52 | 0.59 | 0.85 | 3.64 | 3.3 | 0.003 | 0.68 | 0.0 | 0.04 | 16.94 | 0.00 | 2.009 | 8.46 | 0.39 | 4.4 | 95.6 | 0.0 | -1.79 | 0.95 | 0.64 | 0.89 | 3.52 | 9325 | 1138 | 4 | 0 | 7 | 0 | 0 | logfile |
✔ | 8GoF | 34177 | 2023-08-09 | 2022-08-24 | 3.0 | 2.97 | 3.06 | 3.1 | 0.006 | 0.80 | 0.0 | 0.05 | 12.71 | 0.01 | 2.269 | 7.05 | 0.00 | 2.5 | 97.5 | 0.0 | -6.52 | 0.44 | 0.81 | 3.59 | 3.1 | 0.004 | 0.58 | 0.0 | 0.04 | 14.49 | 0.00 | 2.219 | 8.85 | 1.14 | 2.5 | 97.5 | 0.0 | 1.11 | 1.48 | 0.44 | 0.82 | 2.90 | 3299 | 407 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6TQH | 10551 | 2023-08-24 | 2019-12-16 | 3.4 | 3.87 | 3.27 | 3.6 | 0.013 | 0.92 | 0.0 | 0.06 | 13.91 | 0.00 | 1.729 | 12.64 | 1.45 | 12.5 | 87.5 | 0.0 | -6.51 | 0.82 | 0.80 | 2.62 | 3.6 | 0.002 | 0.62 | 0.0 | 0.05 | 14.47 | 0.00 | 1.950 | 8.35 | 0.00 | 4.4 | 95.6 | 0.0 | -0.74 | 1.51 | 0.81 | 0.82 | 2.52 | 39677 | 2576 | 6 | 0 | 6 | 0 | 19793 | logfile |
✔ | 7U15 | 26278 | 2023-08-10 | 2022-02-19 | 3.0 | 3.14 | — | 3.3 | 0.006 | 1.22 | 0.0 | 0.12 | 17.79 | 0.01 | 1.886 | 12.16 | 3.44 | 3.8 | 96.2 | 0.0 | -6.51 | 0.26 | 0.64 | 1.55 | 3.2 | 0.003 | 0.74 | 0.0 | 0.11 | 17.88 | 0.00 | 1.951 | 10.55 | 3.97 | 17.8 | 82.2 | 0.0 | -5.33 | 1.84 | 0.27 | 0.71 | 2.91 | 6684 | 405 | 6 | 0 | 12 | 0 | 3255 | logfile |
✔ | 6Z7Q | 11112 | 2023-08-14 | 2020-06-01 | 3.8 | 4.10 | 3.58 | 4.0 | 0.006 | 0.77 | 0.0 | 0.05 | 14.47 | 0.00 | 2.176 | 21.13 | 0.00 | 28.6 | 70.7 | 0.7 | -6.49 | 0.73 | 0.82 | 1.75 | 4.0 | 0.005 | 0.92 | 0.0 | 0.05 | 16.92 | 0.00 | 2.170 | 21.04 | 0.91 | 17.3 | 82.6 | 0.0 | -4.35 | 1.20 | 0.75 | 0.83 | 1.27 | 16665 | 2080 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6S8H | 10122 | 2023-08-10 | 2019-07-10 | 3.7 | 3.89 | — | 3.8 | 0.011 | 1.65 | 0.0 | 0.16 | 16.87 | 0.01 | 2.300 | 5.75 | 0.12 | 9.9 | 89.8 | 0.2 | -6.48 | 0.67 | 0.83 | 0.98 | 3.8 | 0.003 | 0.77 | 0.0 | 0.04 | 18.05 | 0.00 | 2.095 | 10.37 | 0.62 | 7.4 | 92.5 | 0.1 | -2.00 | 0.64 | 0.67 | 0.83 | 1.25 | 7818 | 959 | 6 | 0 | 7 | 0 | 0 | logfile |
✔ | 6ZH3 | 11212 | 2023-08-27 | 2020-06-20 | 3.2 | 3.36 | 3.25 | 3.3 | 0.008 | 0.98 | 0.0 | 0.05 | 14.14 | 0.00 | 2.307 | 3.61 | 0.64 | 2.4 | 96.4 | 1.2 | -6.47 | 0.73 | 0.80 | 1.66 | 3.3 | 0.003 | 0.67 | 0.0 | 0.04 | 17.75 | 0.00 | 2.154 | 10.85 | 0.41 | 3.1 | 96.3 | 0.6 | 1.31 | 1.29 | 0.77 | 0.85 | 0.80 | 49716 | 6120 | 36 | 0 | 0 | 0 | 0 | logfile |
✔ | 5o3T | 3743 | 2023-08-12 | 2017-05-24 | 3.4 | 3.55 | 3.25 | 4.0 | 0.007 | 0.92 | 0.0 | 0.06 | 10.15 | 0.01 | 2.301 | 14.44 | 1.56 | 14.1 | 85.9 | 0.0 | -6.47 | 0.53 | 0.63 | 2.13 | 3.5 | 0.003 | 0.66 | 0.0 | 0.05 | 13.08 | 0.00 | 2.112 | 11.27 | 0.00 | 12.0 | 88.0 | 0.0 | -4.99 | 1.54 | 0.52 | 0.73 | 3.04 | 11360 | 730 | 10 | 0 | 0 | 0 | 5790 | logfile |
✔ | 6NCV | 0438 | 2023-08-14 | 2018-12-12 | 3.7 | 3.98 | — | 3.9 | 0.008 | 0.94 | 0.0 | 0.05 | 17.27 | 0.01 | 2.398 | 4.87 | 2.74 | 9.1 | 90.9 | 0.0 | -6.46 | 0.73 | 0.84 | 0.57 | 3.9 | 0.004 | 0.72 | 0.0 | 0.04 | 18.64 | 0.00 | 2.088 | 7.36 | 0.85 | 7.7 | 92.3 | 0.0 | -0.38 | 1.32 | 0.75 | 0.86 | 1.18 | 15456 | 1911 | 21 | 0 | 0 | 0 | 0 | logfile |
✘ | 6X2L | 22011 | 2023-08-11 | 2020-05-20 | 2.85 | 2.95 | — | 2.9 | 0.009 | 0.96 | 0.0 | 0.06 | 13.68 | 0.01 | 2.078 | 2.99 | 0.00 | 2.5 | 97.5 | 0.0 | -6.46 | 0.64 | 0.88 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9396 | 1233 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7C1D | 30269 | 2023-08-09 | 2020-05-03 | 3.8 | 4.18 | — | 4.3 | 0.004 | 0.71 | 0.0 | 0.05 | 13.99 | 0.00 | 2.367 | 18.87 | 0.00 | 20.4 | 79.6 | 0.0 | -6.46 | 0.34 | 0.74 | 3.47 | 6.5 | 0.003 | 0.63 | 0.0 | 0.05 | 14.86 | 0.00 | 2.265 | 16.18 | 2.08 | 14.6 | 85.4 | 0.0 | -4.73 | 2.82 | 0.39 | 0.75 | 3.16 | 2034 | 306 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 5iRX | 8117 | 2023-08-13 | 2016-03-14 | 2.95 | 3.39 | 2.91 | 3.3 | 0.014 | 1.44 | 0.0 | 0.07 | 15.36 | 0.01 | 1.744 | 9.65 | 0.00 | 10.7 | 89.2 | 0.1 | -6.45 | 0.67 | 0.77 | 3.80 | 3.4 | 0.004 | 0.73 | 0.0 | 0.04 | 16.65 | 0.00 | 2.241 | 8.73 | 1.73 | 8.2 | 91.8 | 0.0 | -0.58 | 0.68 | 0.62 | 0.82 | 1.93 | 13162 | 1726 | 12 | 0 | 20 | 0 | 0 | logfile |
✔ | 7ALW | 11820 | 2023-08-27 | 2020-10-07 | 3.7 | 3.77 | 3.62 | 3.7 | 0.010 | 0.96 | 0.0 | 0.05 | 15.64 | 0.00 | 2.150 | 15.88 | 0.98 | 17.3 | 82.4 | 0.3 | -6.45 | 0.81 | 0.86 | 2.68 | 3.7 | 0.003 | 0.77 | 0.0 | 0.05 | 17.83 | 0.00 | 2.195 | 13.13 | 0.27 | 10.5 | 89.2 | 0.3 | -2.80 | 1.01 | 0.79 | 0.84 | 1.53 | 50148 | 6192 | 18 | 0 | 0 | 0 | 0 | logfile |