Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6YKP	10829	2022-12-12	2020-04-06	2.98	3.28	3.05	3.3	0.014	1.23	0.0	0.07	10.75	0.01	2.350	2.77	0.09	3.0	97.0	0.1	-6.56	0.59	0.85	4.85	3.3	0.004	0.75	0.0	0.04	15.71	0.00	2.245	7.57	1.39	2.4	97.6	0.1	0.77	1.10	0.60	0.86	3.22	10190	1326	9	0	0	7	0	logfile
✔	7L1K	23110	2022-12-12	2020-12-14	3.16	3.38	3.16	3.4	0.011	1.29	5.0	0.27	14.84	0.01	2.317	5.62	0.75	9.8	89.9	0.3	-6.55	0.73	0.88	3.48	3.4	0.002	0.65	0.0	0.04	15.75	0.00	2.153	7.91	0.38	7.5	92.5	0.0	-1.67	0.95	0.76	0.89	2.50	7217	883	6	0	2	0	0	logfile
✔	6JCW	9799	2022-12-16	2019-01-30	3.04	3.78	—	3.4	0.007	0.88	0.0	0.05	15.38	0.01	2.168	1.88	0.35	6.1	93.9	0.0	-6.55	0.88	0.88	4.46	3.5	0.003	0.66	0.0	0.04	16.38	0.00	2.172	4.28	0.03	3.2	96.8	0.0	0.03	1.31	0.86	0.89	3.61	30888	3912	36	0	24	100	0	logfile
✔	6o6R	0636	2022-12-15	2019-03-07	3.2	3.33	—	3.3	0.010	1.01	0.0	0.06	15.85	0.01	2.114	7.37	0.00	7.6	92.4	0.0	-6.54	0.61	0.79	2.48	3.3	0.003	0.65	0.0	0.04	16.68	0.00	2.190	10.99	0.24	7.6	92.4	0.0	-1.23	0.56	0.61	0.81	2.55	27744	3332	8	0	28	0	0	logfile
✔	7V4C	31707	2022-12-11	2021-08-12	3.3	2.93	—	3.4	0.008	0.75	0.0	0.06	12.47	0.00	2.305	12.50	0.00	20.0	80.0	0.0	-6.54	0.40	0.83	2.37	3.4	0.003	0.61	0.0	0.05	17.76	0.00	2.159	3.79	0.76	7.8	92.2	0.0	-4.65	1.18	0.39	0.82	3.35	1287	186	3	0	0	0	0	logfile
✔	6GCT	4386	2022-12-12	2018-04-19	3.85	3.94	3.80	3.9	0.012	1.40	0.0	0.07	14.50	0.01	2.330	6.80	5.57	5.8	93.9	0.2	-6.53	0.67	0.83	1.60	3.9	0.006	1.07	0.0	0.05	15.06	0.00	2.171	16.07	0.88	5.3	94.7	0.0	-2.34	0.72	0.64	0.83	1.87	9672	1299	6	0	0	0	0	logfile
✔	6TQF	10550	2022-12-12	2019-12-16	3.5	3.81	—	3.7	0.009	0.96	0.0	0.06	15.62	0.01	2.092	3.00	0.09	5.2	94.8	0.0	-6.53	0.74	0.90	2.73	3.7	0.003	0.61	0.0	0.04	15.80	0.00	1.946	2.57	0.09	3.9	96.1	0.0	-3.90	0.35	0.74	0.90	2.92	10426	1268	4	0	14	0	0	logfile
✔	8GoF	34177	2022-12-11	2022-08-24	3.0	2.97	3.06	3.1	0.006	0.80	0.0	0.05	12.71	0.01	2.269	7.05	0.00	2.5	97.5	0.0	-6.52	0.44	0.81	3.59	3.1	0.003	0.56	0.0	0.04	14.48	0.00	2.245	8.70	0.57	2.0	98.0	0.0	1.14	1.49	0.44	0.82	2.90	3299	407	1	0	1	0	0	logfile
✔	7BSU	30167	2022-12-12	2020-03-31	3.2	3.35	—	3.3	0.006	0.60	0.0	0.04	18.02	0.01	1.626	31.07	7.59	7.6	92.4	0.0	-6.52	0.59	0.85	3.64	3.3	0.003	0.66	0.0	0.04	17.07	0.00	1.996	8.41	0.20	3.9	96.1	0.0	-1.66	0.96	0.64	0.88	3.26	9325	1138	4	0	7	0	0	logfile
✔	6TQH	10551	2022-12-20	2019-12-16	3.4	3.87	3.27	3.6	0.013	0.92	0.0	0.06	13.91	0.00	1.729	12.85	1.45	12.5	87.5	0.0	-6.51	0.82	0.80	2.62	3.6	0.002	0.62	0.0	0.05	14.52	0.00	1.940	8.65	0.14	4.8	95.2	0.0	-0.86	1.51	0.81	0.83	2.66	39677	2576	6	0	6	0	19793	logfile
✔	7U15	26278	2022-12-11	2022-02-19	3.0	3.14	—	3.3	0.006	1.18	0.0	0.12	17.37	0.01	1.886	12.16	3.44	3.8	96.2	0.0	-6.51	0.26	0.64	1.55	3.2	0.003	0.74	0.0	0.11	17.44	0.00	1.928	11.58	3.17	16.8	83.2	0.0	-5.23	1.48	0.27	0.70	2.64	6684	405	6	0	12	0	3255	logfile
✔	6Z7Q	11112	2022-12-13	2020-06-01	3.8	4.10	3.58	4.0	0.006	0.77	0.0	0.05	14.47	0.00	2.176	21.13	0.00	28.6	70.7	0.7	-6.49	0.73	0.82	1.75	4.0	0.005	0.90	0.0	0.05	16.79	0.00	2.164	20.65	0.80	17.3	82.7	0.0	-4.36	1.19	0.75	0.83	1.11	16665	2080	5	0	0	0	0	logfile
✔	6S8H	10122	2022-12-11	2019-07-10	3.7	3.89	—	3.8	0.011	1.64	0.0	0.26	17.14	0.01	2.300	5.75	0.12	9.9	89.8	0.2	-6.48	0.67	0.83	0.98	3.8	0.004	0.98	0.0	0.09	18.00	0.00	2.087	11.06	0.62	8.4	91.5	0.1	-2.12	0.65	0.67	0.84	0.83	7818	959	6	0	7	0	0	logfile
✔	5o3T	3743	2022-12-12	2017-05-24	3.4	3.55	3.25	4.0	0.007	0.92	0.0	0.06	10.15	0.01	2.301	15.23	1.56	14.1	85.9	0.0	-6.47	0.53	0.63	2.13	3.5	0.003	0.64	0.0	0.05	12.81	0.00	2.146	10.56	0.16	10.4	89.6	0.0	-4.94	1.53	0.50	0.71	3.01	11360	730	10	0	0	0	5790	logfile
✔	6ZH3	11212	2022-12-22	2020-06-20	3.2	3.36	3.25	3.3	0.008	0.98	0.0	0.05	14.14	0.00	2.307	3.61	0.64	2.4	96.4	1.2	-6.47	0.73	0.80	1.70	3.3	0.004	0.70	0.0	0.04	17.77	0.00	2.144	11.18	0.53	3.1	96.3	0.6	1.26	1.28	0.77	0.85	0.92	49716	6120	36	0	0	0	0	logfile
✔	6NCV	0438	2022-12-13	2018-12-12	3.7	3.98	—	3.9	0.008	0.94	0.0	0.05	17.27	0.01	2.398	4.87	2.74	9.1	90.9	0.0	-6.46	0.73	0.84	0.57	3.9	0.004	0.73	0.0	0.04	18.50	0.00	2.089	7.10	0.98	6.2	93.8	0.0	-0.22	1.69	0.74	0.85	1.18	15456	1911	21	0	0	0	0	logfile
✔	6X2L	22011	2022-12-12	2020-05-20	2.85	2.95	—	2.9	0.009	0.96	0.0	0.06	13.68	0.01	2.078	2.99	0.00	2.5	97.5	0.0	-6.46	0.64	0.88	2.92	2.9	0.003	0.64	0.0	0.04	15.84	0.00	2.284	5.83	1.74	2.3	97.7	0.0	1.92	1.01	0.61	0.89	2.26	9396	1233	3	0	0	0	0	logfile
✔	7C1D	30269	2022-12-11	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	18.87	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.004	0.69	0.0	0.05	14.90	0.00	2.239	18.63	0.52	24.5	75.5	0.0	-4.57	2.82	0.39	0.75	2.42	2034	306	6	0	0	0	0	logfile
✔	5iRX	8117	2022-12-13	2016-03-14	2.95	3.39	2.91	3.3	0.014	1.44	0.0	0.07	15.36	0.01	1.744	9.65	0.00	10.7	89.2	0.1	-6.45	0.67	0.77	3.80	3.4	0.004	0.69	0.0	0.04	16.93	0.00	2.250	7.69	1.54	8.5	91.5	0.0	-1.10	0.67	0.62	0.82	2.03	13162	1726	12	0	20	0	0	logfile
✔	7ALW	11820	2022-12-22	2020-10-07	3.7	3.77	3.62	3.7	0.010	0.96	0.0	0.05	15.64	0.00	2.150	15.88	0.98	17.3	82.4	0.3	-6.45	0.81	0.86	2.68	3.7	0.003	0.78	0.0	0.04	17.72	0.00	2.181	11.44	0.49	10.1	89.8	0.2	-2.13	1.03	0.79	0.84	1.26	50148	6192	18	0	0	0	0	logfile

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