Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6BoA	7122	2023-04-25	2017-11-18	4.2	4.31	—	4.3	0.007	1.29	0.0	0.06	11.91	0.01	2.296	4.73	1.74	10.5	89.5	0.0	-5.87	0.73	0.81	—	4.2	0.004	0.85	0.0	0.05	13.51	0.00	2.139	12.64	0.19	10.2	89.8	0.0	-0.72	1.90	0.74	0.82	—	19040	2372	4	0	0	0	0	logfile
✘	7E0H	30932	2023-04-20	2021-01-28	3.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8017	661	6	0	57	0	0	logfile
✔	6N7N	0359	2023-04-22	2018-11-27	3.5	3.55	—	3.5	0.006	0.99	0.0	0.06	14.77	0.00	1.975	4.24	0.74	5.5	94.5	0.0	-3.49	0.67	0.66	1.98	3.5	0.002	0.60	0.0	0.04	16.36	0.00	1.919	10.78	0.22	4.0	96.0	0.0	-0.96	1.69	0.69	0.69	1.43	12854	1608	12	15	10	0	0	logfile
✔	6oEQ	20034	2023-04-25	2019-03-27	4.3	4.55	—	4.3	0.009	1.05	0.0	0.06	22.94	0.01	1.742	8.94	0.62	8.7	91.2	0.1	-4.02	0.88	0.82	—	4.3	0.003	0.65	0.0	0.04	21.80	0.00	1.986	13.74	0.00	5.9	94.1	0.1	-1.25	1.23	0.88	0.81	—	19134	1910	10	206	4	0	0	logfile
✔	6L7C	0842	2023-04-25	2019-11-01	3.34	3.45	—	3.4	0.006	0.86	0.0	0.05	14.85	0.01	2.347	3.80	1.20	4.3	95.7	0.0	-3.41	0.73	0.84	2.34	3.4	0.003	0.64	0.0	0.04	16.78	0.00	2.208	8.94	0.22	3.4	96.6	0.0	1.03	0.57	0.76	0.86	1.84	20601	2655	27	0	0	0	0	logfile
✔	6VX5	21430	2023-04-22	2020-02-21	3.03	3.58	—	3.5	0.006	0.80	0.0	0.05	14.27	0.00	2.348	4.97	0.00	3.3	96.7	0.0	-6.15	0.72	0.84	2.92	3.5	0.003	0.65	0.0	0.04	16.41	0.00	2.259	9.26	0.50	1.6	98.4	0.0	-0.38	1.27	0.67	0.80	2.34	13056	1575	6	0	1	0	0	logfile
✔	7W9V	32373	2023-04-24	2021-12-10	3.95	4.17	—	4.0	0.006	0.86	0.0	0.05	25.08	0.01	2.021	8.63	0.44	2.0	98.0	0.0	-0.79	0.79	0.65	0.99	4.0	0.003	0.52	0.0	0.03	25.97	0.00	1.961	39.59	0.09	3.1	96.9	0.0	2.06	1.37	0.88	0.84	1.07	18546	1302	11	290	0	0	2136	logfile
✔	6YW6	10959	2023-04-23	2020-04-29	4.2	4.50	—	4.3	0.007	1.15	2.0	0.07	10.85	0.01	2.164	11.25	0.73	6.2	93.5	0.3	-4.53	0.85	0.78	—	4.3	0.003	0.71	0.0	0.05	12.15	0.00	2.151	16.36	0.07	5.6	94.4	0.0	-1.53	2.52	0.86	0.78	—	13823	1722	9	0	2	0	0	logfile
✔	7BW4	30226	2023-04-20	2020-04-13	3.7	3.92	—	3.8	0.004	0.66	1.0	0.05	15.16	0.00	2.078	16.25	1.68	4.3	95.5	0.2	-2.50	0.77	0.77	1.82	3.8	0.003	0.74	0.0	0.05	16.62	0.00	2.197	15.13	0.53	4.8	95.1	0.1	-1.02	1.36	0.77	0.77	1.41	8605	1078	5	0	2	0	0	logfile
✔	6N7i	0357	2023-04-21	2018-11-27	3.2	3.34	—	3.3	0.005	0.91	0.0	0.06	14.82	0.02	2.157	2.64	0.53	3.9	96.1	0.0	-3.45	0.69	0.75	2.35	3.3	0.003	0.66	0.0	0.04	17.64	0.00	1.961	8.93	0.62	4.1	95.9	0.0	-0.76	1.31	0.73	0.81	2.15	10833	1350	12	15	8	1	0	logfile
✔	6DRD	7997	2023-04-27	2018-06-11	3.9	3.90	—	3.8	0.010	1.13	0.0	0.06	10.41	0.01	2.169	7.47	0.68	11.1	88.7	0.1	-5.06	0.75	0.76	2.60	3.8	0.003	0.70	0.0	0.05	14.89	0.00	2.152	12.58	0.34	7.8	92.2	0.0	-2.20	0.81	0.77	0.80	1.90	26708	3304	17	0	50	0	0	logfile
✔	6BoB	7123	2023-04-25	2017-11-18	3.9	3.98	—	3.9	0.007	1.20	0.0	0.06	11.84	0.01	2.259	7.24	0.76	11.1	88.5	0.3	-4.96	0.58	0.65	1.68	3.9	0.004	0.89	0.0	0.05	16.41	0.00	2.099	13.75	0.76	8.4	91.6	0.0	-1.37	0.99	0.73	0.80	1.63	19340	2412	4	0	0	0	0	logfile
✔	6K9L	9950	2023-04-29	2019-06-16	4.27	4.50	—	4.2	0.001	0.49	0.0	0.04	9.31	0.00	2.240	4.79	4.95	4.6	95.4	0.0	-3.11	0.84	0.71	—	4.2	0.002	0.68	0.0	0.04	9.69	0.00	2.113	12.22	0.00	7.1	92.9	0.0	0.72	1.80	0.85	0.75	—	30601	5103	2	0	0	0	0	logfile
✔	7D5K	30583	2023-04-24	2020-09-26	3.5	3.34	—	3.4	0.003	0.69	0.0	0.04	13.77	0.00	2.124	6.92	0.79	7.8	92.2	0.0	-0.11	0.58	0.76	2.00	3.4	0.003	0.62	0.0	0.04	15.46	0.00	2.124	6.52	0.16	4.0	96.0	0.0	1.08	1.15	0.59	0.77	1.69	17667	2181	9	0	12	0	0	logfile
✔	5VZL	8749	2023-04-23	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.72	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	17.0	0.002	0.64	0.0	0.04	15.49	0.00	1.241	12.10	0.08	5.0	95.0	0.0	-1.15	1.21	0.38	0.18	0.61	13915	1451	3	115	1	0	0	logfile
✔	6iV6	9742	2023-04-21	2018-12-02	3.6	3.59	—	3.6	0.005	1.04	0.0	0.05	16.90	0.01	2.261	4.91	0.61	6.7	93.3	0.1	-5.17	0.64	0.75	2.10	3.6	0.003	0.68	0.0	0.04	18.21	0.00	2.167	8.46	0.40	7.8	92.2	0.0	-2.33	0.91	0.68	0.75	2.14	10158	1209	2	26	0	0	0	logfile
✔	7SMS	25207	2023-04-24	2021-10-26	3.18	3.33	—	3.3	0.006	0.78	0.0	0.05	15.18	0.00	2.187	5.21	0.00	2.8	97.2	0.0	1.21	0.78	0.85	3.74	3.3	0.003	0.49	0.0	0.04	15.26	0.00	2.216	6.79	0.27	2.0	98.0	0.0	1.82	1.14	0.79	0.87	3.39	17051	2015	15	0	32	0	0	logfile
✔	7C0M	30267	2023-04-29	2020-05-01	3.9	4.76	—	3.8	0.011	0.83	0.0	0.05	27.43	0.00	2.189	13.32	0.73	5.5	94.5	0.0	-1.85	0.76	0.57	1.06	3.8	0.005	0.64	0.0	0.04	27.55	0.00	1.976	14.68	0.10	3.7	96.3	0.0	1.75	1.25	0.86	0.76	0.89	29816	2234	24	580	2	0	0	logfile
✔	5TJi	8414	2023-04-28	2016-10-04	3.8	8.35	—	3.4	0.007	0.98	0.0	0.06	11.75	0.00	2.483	1.87	0.41	6.0	93.8	0.2	-3.10	0.73	0.80	0.32	3.7	0.003	0.64	0.0	0.04	12.64	0.00	2.134	10.94	0.14	2.6	97.4	0.0	0.71	0.70	0.73	0.84	0.89	27720	3528	4	0	4	0	0	logfile
✔	7E3C	30979	2023-04-19	2021-02-08	4.2	3.87	—	3.7	0.026	1.55	0.0	0.05	13.84	0.01	2.151	21.49	0.00	17.2	82.3	0.5	-3.63	0.79	0.79	—	3.7	0.004	0.75	0.0	0.05	13.96	0.00	2.140	14.75	0.00	12.6	87.4	0.0	-3.24	1.57	0.79	0.79	—	2937	405	4	0	1	0	0	logfile

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