Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8B0J	15785	2022-12-16	2022-09-07	3.99	4.45	4.02	4.1	0.009	1.30	0.0	0.08	19.83	0.01	1.945	11.42	0.00	9.7	90.3	0.0	-2.43	0.73	0.68	1.71	4.1	0.003	0.63	0.0	0.04	19.88	0.00	1.954	15.72	0.48	6.0	94.0	0.0	-0.41	1.27	0.75	0.74	1.59	28636	1931	7	160	0	0	12434	logfile
✘	8AZT	15771	2022-12-18	2022-09-06	3.7	3.48	2.93	4.2	0.011	1.98	0.0	0.11	15.54	0.01	0.000	19.56	4.35	10.3	89.7	0.0	-6.12	0.40	0.59	5.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5424	744	24	0	0	0	0	logfile
✔	8AZS	15770	2022-12-12	2022-09-06	2.9	2.78	2.55	2.8	0.011	1.50	0.0	0.12	16.09	0.01	0.017	1346.55	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	3.3	0.027	3.71	25.0	0.19	25.02	0.02	1.804	345.70	17.56	51.6	42.5	5.9	-8.21	18.78	0.21	0.21	0.44	9036	1224	36	0	0	0	0	logfile
✔	8GS6	34221	2022-12-15	2022-09-05	2.86	3.44	2.87	3.3	0.004	0.59	0.0	0.05	14.61	0.00	2.140	6.33	0.00	4.4	95.6	0.0	-0.45	0.83	0.84	2.81	3.3	0.003	0.59	0.0	0.05	15.82	0.00	2.162	6.04	1.20	4.9	95.1	0.0	-0.26	0.32	0.83	0.85	2.68	24538	3058	11	0	41	0	0	logfile
✔	8AZA	15757	2022-12-11	2022-09-05	3.15	4.29	3.15	3.5	0.004	0.76	1.0	0.05	17.83	0.01	2.202	26.99	0.73	4.9	95.1	0.0	-0.75	0.83	0.67	0.65	3.5	0.003	0.79	0.0	0.05	17.85	0.01	2.223	21.45	0.55	4.8	95.2	0.0	-0.38	0.65	0.84	0.70	0.65	4970	606	4	0	1	0	0	logfile
✔	8GS2	34218	2022-12-13	2022-09-04	2.84	3.09	2.94	3.1	0.002	0.42	0.0	0.04	10.20	0.00	1.579	4.58	0.30	1.2	98.8	0.0	1.18	0.74	0.89	4.67	3.1	0.003	0.51	0.0	0.04	15.16	0.00	2.176	6.79	1.74	1.8	98.2	0.0	1.33	1.32	0.74	0.90	4.27	16935	1916	7	64	4	0	0	logfile
✘	8ED9	28033	2022-12-18	2022-09-03	3.4	3.68	3.47	3.6	0.015	0.99	0.0	0.08	12.33	0.00	1.182	5.36	2.91	5.9	94.1	0.0	0.04	0.74	0.80	2.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32229	3872	12	0	81	0	0	logfile
✘	8ED8	28032	2022-12-18	2022-09-03	3.2	3.50	3.31	3.5	0.015	0.97	0.0	0.08	12.14	0.00	1.181	4.65	2.56	4.4	95.6	0.0	0.34	0.73	0.80	2.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32229	3872	12	0	81	0	0	logfile
✔	8ED7	28031	2022-12-16	2022-09-03	3.7	3.72	3.77	3.6	0.004	0.54	0.0	0.04	12.05	0.00	2.230	4.42	2.92	4.4	95.6	0.0	0.57	0.87	0.82	1.43	3.6	0.003	0.65	0.0	0.04	14.44	0.00	2.123	7.66	0.35	3.8	96.2	0.0	1.50	0.47	0.87	0.83	0.95	31518	3826	11	0	72	0	0	logfile
✔	8ECY	28025	2022-12-21	2022-09-02	2.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	46485	5540	45	0	36	2024	0	logfile
✔	8GQY	34203	2022-12-12	2022-08-31	3.4	2.82	3.40	3.6	0.005	0.66	0.0	0.04	12.58	0.00	2.117	7.22	5.67	3.6	96.4	0.0	-7.14	0.69	0.86	3.37	3.6	0.003	0.66	0.0	0.04	15.13	0.00	2.173	7.42	0.60	1.6	98.4	0.0	-0.24	1.07	0.66	0.86	2.16	9515	1265	5	0	0	0	0	logfile
✔	8EAQ	27982	2022-12-15	2022-08-29	3.26	3.39	3.29	3.3	0.004	0.64	0.0	0.04	14.30	0.01	2.177	10.57	0.42	4.1	95.5	0.4	1.05	0.72	0.77	1.71	3.3	0.003	0.63	0.0	0.04	15.80	0.00	2.137	10.28	0.13	4.4	95.4	0.2	0.70	0.48	0.75	0.79	1.76	77928	9496	8	0	52	0	0	logfile
✔	8EAT	27985	2022-12-19	2022-08-29	3.1	3.35	3.09	3.3	0.004	0.54	0.0	0.04	12.78	0.00	2.047	6.00	0.00	2.7	97.3	0.0	0.06	0.66	0.80	3.27	3.3	0.005	0.54	0.0	0.04	14.19	0.00	2.160	7.56	0.17	2.2	97.8	0.0	2.03	0.38	0.66	0.82	3.05	34663	2349	15	0	0	0	17463	logfile
✔	8EAU	27986	2022-12-14	2022-08-29	3.1	3.32	3.11	3.3	0.004	0.64	0.0	0.04	12.72	0.00	2.097	9.21	0.00	1.7	98.3	0.0	1.07	0.67	0.82	3.62	3.3	0.003	0.58	0.0	0.04	14.75	0.00	2.131	10.09	0.27	1.7	98.3	0.0	1.70	1.52	0.70	0.85	2.72	21909	2946	16	0	0	0	0	logfile
✘	8EAR	27983	2022-12-19	2022-08-29	3.5	3.77	3.66	3.7	0.003	0.64	0.0	0.04	13.92	0.00	1.382	11.75	0.18	4.1	95.6	0.3	0.42	0.68	0.69	1.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	78512	9556	8	0	56	0	0	logfile
✔	8EAS	27984	2022-12-15	2022-08-29	2.6	2.77	2.60	2.8	0.006	0.64	0.0	0.04	12.91	0.00	2.044	9.09	0.00	1.4	98.6	0.0	1.65	0.67	0.83	4.09	2.8	0.003	0.52	0.0	0.04	15.45	0.00	2.189	9.04	1.20	1.2	98.8	0.0	2.29	0.29	0.66	0.84	3.41	24802	3241	18	0	39	0	0	logfile
✔	8AW3	15690	2022-12-11	2022-08-29	3.6	4.37	3.68	3.7	0.008	1.10	3.0	0.08	15.19	0.01	1.874	12.09	2.12	5.9	94.1	0.0	-1.95	0.79	0.65	2.69	3.7	0.004	0.63	0.0	0.04	15.95	0.00	1.775	17.01	0.00	4.5	95.5	0.0	-0.98	0.79	0.86	0.81	1.84	5059	456	5	73	2	0	0	logfile
✔	8EAX	27989	2022-12-14	2022-08-29	3.73	2.60	3.72	2.0	0.004	0.83	0.0	0.05	14.96	0.00	2.213	11.91	0.30	9.8	89.8	0.4	-3.99	0.73	0.74	1.75	2.0	0.003	0.87	0.0	0.04	17.71	0.00	1.956	11.48	0.35	5.8	94.2	0.0	-0.35	1.34	0.73	0.72	1.16	18458	2332	8	0	0	0	0	logfile
✔	8E9W	27966	2022-12-12	2022-08-27	2.69	2.11	2.70	1.9	0.004	0.68	0.0	0.04	12.70	0.00	2.210	7.67	0.11	2.9	97.1	0.0	0.23	0.78	0.78	3.54	1.9	0.003	0.57	0.0	0.04	15.46	0.00	2.152	8.09	1.37	3.2	96.8	0.0	0.59	0.35	0.80	0.82	3.00	8529	1123	6	0	1	0	0	logfile
✔	8E9Y	27968	2022-12-12	2022-08-27	2.79	2.12	2.79	1.9	0.005	0.83	0.0	0.05	13.56	0.00	2.217	12.98	0.12	5.2	94.8	0.0	-1.06	0.76	0.75	3.19	1.9	0.003	0.61	0.0	0.04	15.88	0.00	2.206	10.75	2.20	4.4	95.5	0.1	-0.36	0.37	0.76	0.76	2.76	8479	1123	6	0	1	0	0	logfile

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