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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6WDB | 21630 | 2024-03-26 | 2020-03-31 | 4.0 | 4.30 | 5.11 | 4.1 | 0.006 | 0.99 | 0.0 | 0.08 | 21.96 | 0.01 | 2.211 | 11.44 | 0.77 | 11.9 | 86.2 | 1.9 | -4.97 | 0.78 | 0.72 | — | 4.1 | 0.004 | 0.81 | 0.0 | 0.04 | 24.35 | 0.01 | 2.000 | 33.03 | 5.89 | 12.2 | 87.7 | 0.2 | -3.28 | 0.91 | 0.81 | 0.77 | — | 150149 | 6024 | 59 | 4807 | 0 | 0 | 0 | logfile |
✔ | 7XU6 | 33460 | 2024-03-26 | 2022-05-18 | 2.9 | 3.40 | 2.92 | 3.2 | 0.012 | 0.96 | 0.0 | 0.05 | 14.18 | 0.01 | 2.069 | 3.27 | 0.74 | 6.7 | 93.3 | 0.0 | -1.74 | 0.80 | 0.78 | 2.99 | 3.2 | 0.003 | 0.55 | 0.0 | 0.04 | 13.85 | 0.00 | 1.936 | 8.27 | 0.67 | 5.1 | 94.9 | 0.0 | -0.79 | 0.45 | 0.82 | 0.81 | 3.06 | 51464 | 3267 | 18 | 0 | 66 | 0 | 24902 | logfile |
✔ | 6WDJ | 21638 | 2024-03-26 | 2020-03-31 | 3.7 | 4.11 | 4.20 | 4.0 | 0.006 | 0.96 | 0.0 | 0.08 | 21.93 | 0.01 | 2.162 | 8.59 | 0.41 | 11.0 | 87.3 | 1.7 | -4.77 | 0.81 | 0.81 | 1.03 | 4.0 | 0.004 | 0.69 | 0.0 | 0.04 | 23.43 | 0.01 | 2.045 | 22.79 | 6.81 | 10.1 | 89.8 | 0.1 | -2.48 | 1.51 | 0.83 | 0.83 | 0.62 | 150211 | 6024 | 59 | 4810 | 0 | 0 | 0 | logfile |
✔ | 6WDM | 21641 | 2024-03-26 | 2020-03-31 | 3.6 | 3.93 | 3.85 | 3.8 | 0.006 | 0.96 | 0.0 | 0.08 | 21.96 | 0.01 | 1.315 | 8.41 | 0.61 | 10.3 | 88.0 | 1.7 | -4.77 | 0.82 | 0.83 | 1.11 | 3.8 | 0.007 | 0.88 | 4.0 | 0.04 | 23.52 | 0.01 | 1.820 | 27.88 | 7.82 | 11.8 | 88.0 | 0.2 | -2.57 | 0.68 | 0.84 | 0.85 | 1.08 | 150220 | 6025 | 58 | 4810 | 0 | 0 | 0 | logfile |
✔ | 7o5B | 12734 | 2024-03-26 | 2021-04-08 | 3.33 | 4.51 | — | 3.5 | 0.006 | 0.98 | 3.0 | 0.05 | 23.96 | 0.01 | 2.186 | 5.13 | 0.15 | 2.1 | 97.7 | 0.2 | -2.61 | 0.87 | 0.80 | 1.19 | 3.5 | 0.008 | 0.83 | 0.0 | 0.04 | 24.32 | 0.01 | 1.951 | 26.59 | 3.97 | 9.2 | 90.7 | 0.1 | -1.44 | 1.22 | 0.91 | 0.89 | 0.83 | 150422 | 6001 | 57 | 4884 | 0 | 0 | 0 | logfile |
✔ | 6WDE | 21633 | 2024-03-26 | 2020-03-31 | 3.0 | 3.35 | 3.25 | 3.2 | 0.006 | 0.94 | 0.0 | 0.08 | 22.16 | 0.01 | 1.309 | 10.30 | 0.96 | 10.3 | 87.8 | 1.9 | -4.88 | 0.80 | 0.84 | 1.82 | 3.2 | 0.005 | 0.70 | 0.0 | 0.04 | 23.13 | 0.01 | 1.948 | 15.83 | 5.27 | 9.2 | 90.6 | 0.2 | -2.31 | 1.46 | 0.81 | 0.86 | 1.51 | 150220 | 6025 | 58 | 4810 | 0 | 0 | 0 | logfile |
✔ | 8DG4 | 27407 | 2024-03-26 | 2022-06-23 | 3.12 | 3.38 | 3.17 | 3.4 | 0.013 | 1.93 | 24.0 | 0.10 | 13.65 | 0.01 | 2.537 | 0.00 | 0.15 | 3.9 | 96.0 | 0.1 | -2.10 | 0.68 | 0.80 | 3.99 | 3.4 | 0.003 | 0.55 | 0.0 | 0.04 | 15.23 | 0.00 | 1.888 | 2.37 | 1.30 | 4.3 | 95.7 | 0.0 | -0.93 | 0.44 | 0.64 | 0.79 | 2.72 | 52368 | 3488 | 8 | 0 | 0 | 0 | 25920 | logfile |
✔ | 6WDH | 21636 | 2024-03-26 | 2020-03-31 | 4.3 | 3.96 | 5.24 | 3.9 | 0.006 | 1.00 | 0.0 | 0.08 | 21.93 | 0.01 | 2.227 | 11.41 | 1.02 | 12.5 | 85.3 | 2.1 | -4.94 | 0.74 | 0.68 | — | 3.8 | 0.005 | 0.74 | 0.0 | 0.04 | 23.08 | 0.01 | 2.024 | 22.62 | 0.04 | 10.8 | 89.1 | 0.1 | -2.55 | 1.38 | 0.82 | 0.82 | — | 150149 | 6024 | 59 | 4807 | 0 | 0 | 0 | logfile |
✔ | 7AEF | 11745 | 2024-03-26 | 2020-09-17 | 2.8 | 2.86 | — | 2.8 | 0.015 | 1.59 | 7.0 | 0.09 | 11.19 | 0.01 | 1.331 | 4.67 | 0.02 | 2.5 | 97.4 | 0.1 | -0.11 | 0.67 | 0.78 | 3.00 | 2.8 | 0.006 | 0.77 | 0.0 | 0.05 | 16.71 | 0.01 | 1.922 | 4.34 | 2.63 | 4.6 | 95.3 | 0.0 | -0.47 | 0.74 | 0.73 | 0.86 | 3.15 | 149535 | 19014 | 48 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YBW | 10775 | 2024-03-26 | 2020-03-18 | 3.1 | 3.30 | 2.98 | 3.2 | 0.008 | 1.06 | 0.0 | 0.05 | 22.64 | 0.02 | 2.097 | 4.22 | 3.04 | 3.7 | 96.3 | 0.0 | -2.06 | 0.74 | 0.87 | 3.02 | 3.2 | 0.003 | 0.67 | 0.0 | 0.04 | 22.48 | 0.01 | 1.929 | 8.34 | 3.92 | 2.7 | 97.3 | 0.0 | -0.16 | 1.12 | 0.74 | 0.88 | 2.97 | 52840 | 3374 | 30 | 1248 | 61 | 0 | 0 | logfile |
✔ | 5ZEB | 6920 | 2024-03-26 | 2018-02-27 | 3.4 | 3.46 | — | 3.4 | 0.010 | 1.18 | 2.0 | 0.06 | 24.03 | 0.01 | 1.088 | 18.34 | 3.23 | 8.4 | 90.3 | 1.4 | -3.95 | 0.79 | 0.77 | 1.84 | 3.4 | 0.007 | 0.80 | 0.0 | 0.04 | 23.71 | 0.01 | 1.956 | 14.34 | 3.86 | 9.4 | 90.3 | 0.3 | -1.56 | 4.01 | 0.82 | 0.84 | 1.63 | 150328 | 6095 | 56 | 4802 | 0 | 0 | 0 | logfile |
✘ | 7D1U | 30548 | 2024-03-26 | 2020-09-15 | 2.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 52655 | 5312 | 106 | 0 | 196 | 2121 | 0 | logfile |
✔ | 8AGX | 15427 | 2024-03-26 | 2022-07-20 | 2.4 | 3.19 | 2.52 | 2.5 | 0.006 | 0.93 | 5.0 | 0.05 | 21.77 | 0.01 | 1.296 | 4.14 | 2.04 | 3.7 | 96.2 | 0.1 | -0.44 | 0.92 | 0.89 | 3.34 | 2.6 | 0.004 | 0.63 | 1.0 | 0.04 | 21.68 | 0.00 | 1.910 | 8.64 | 2.02 | 4.4 | 95.6 | 0.0 | 0.51 | 0.46 | 0.94 | 0.93 | 3.42 | 149706 | 9204 | 68 | 3640 | 41 | 0 | 0 | logfile |
✔ | 5MDV | 3489 | 2024-03-26 | 2016-11-13 | 2.97 | 3.05 | 2.97 | 3.0 | 0.008 | 1.26 | 22.0 | 0.10 | 23.70 | 0.02 | 1.257 | 3.21 | 7.74 | 4.9 | 94.7 | 0.4 | -1.77 | 0.79 | 0.88 | 3.19 | 3.0 | 0.004 | 0.65 | 1.0 | 0.04 | 23.11 | 0.01 | 1.752 | 9.09 | 4.16 | 3.1 | 96.9 | 0.0 | 0.38 | 0.44 | 0.82 | 0.89 | 2.95 | 149892 | 6382 | 67 | 4638 | 442 | 2 | 0 | logfile |
✔ | 5MDW | 3490 | 2024-03-26 | 2016-11-13 | 3.06 | 3.16 | 3.07 | 3.1 | 0.009 | 1.33 | 26.0 | 0.11 | 23.73 | 0.02 | 1.464 | 3.52 | 7.69 | 5.6 | 93.9 | 0.5 | -1.97 | 0.81 | 0.89 | 2.64 | 3.1 | 0.008 | 0.75 | 0.0 | 0.04 | 23.01 | 0.01 | 1.786 | 7.83 | 5.78 | 4.1 | 95.9 | 0.0 | -0.19 | 1.15 | 0.83 | 0.89 | 2.54 | 149607 | 6346 | 67 | 4638 | 440 | 2 | 0 | logfile |
✔ | 7T3L | 25662 | 2024-03-26 | 2021-12-08 | 3.6 | 8.29 | — | 3.5 | 0.004 | 0.74 | 0.0 | 0.05 | 18.09 | 0.01 | 2.223 | 7.57 | 0.52 | 5.0 | 95.0 | 0.0 | -1.92 | 0.73 | 0.45 | -0.03 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 18.37 | 0.00 | 2.091 | 21.81 | 1.24 | 5.6 | 94.4 | 0.0 | 0.29 | 1.18 | 0.95 | 0.84 | -0.02 | 52219 | 6242 | 28 | 200 | 0 | 0 | 0 | logfile |
✔ | 6WDC | 21631 | 2024-03-26 | 2020-03-31 | 4.2 | 4.07 | 4.55 | 3.9 | 0.006 | 1.01 | 0.0 | 0.08 | 22.00 | 0.01 | 2.262 | 11.85 | 1.14 | 13.3 | 84.6 | 2.1 | -5.10 | 0.77 | 0.73 | — | 3.9 | 0.005 | 0.83 | 0.0 | 0.04 | 23.70 | 0.01 | 1.973 | 31.36 | 0.08 | 13.4 | 86.5 | 0.1 | -3.35 | 1.58 | 0.80 | 0.77 | — | 150149 | 6024 | 59 | 4807 | 0 | 0 | 0 | logfile |
✔ | 6WDK | 21639 | 2024-03-26 | 2020-03-31 | 3.6 | 3.94 | 3.93 | 3.8 | 0.006 | 0.95 | 0.0 | 0.08 | 21.91 | 0.01 | 1.311 | 8.08 | 0.51 | 11.0 | 87.2 | 1.8 | -4.81 | 0.82 | 0.82 | 1.17 | 3.8 | 0.004 | 0.70 | 0.0 | 0.04 | 23.36 | 0.01 | 2.024 | 20.66 | 6.19 | 10.1 | 89.7 | 0.2 | -2.42 | 1.52 | 0.83 | 0.83 | 1.02 | 150222 | 6025 | 60 | 4810 | 0 | 0 | 0 | logfile |
✔ | 8AGU | 15424 | 2024-03-26 | 2022-07-20 | 2.7 | 3.26 | 2.76 | 2.7 | 0.006 | 0.90 | 6.0 | 0.05 | 21.59 | 0.01 | 1.041 | 6.23 | 1.81 | 3.6 | 96.3 | 0.1 | 0.14 | 0.92 | 0.88 | 3.27 | 2.7 | 0.005 | 0.69 | 5.0 | 0.04 | 21.61 | 0.01 | 1.922 | 10.25 | 2.38 | 4.3 | 95.7 | 0.0 | 0.57 | 0.48 | 0.93 | 0.91 | 3.23 | 149748 | 9427 | 68 | 3568 | 38 | 0 | 0 | logfile |
✔ | 8FL7 | 29269 | 2024-03-26 | 2022-12-21 | 2.55 | 2.80 | 2.68 | 2.9 | 0.007 | 0.74 | 0.0 | 0.04 | 21.70 | 0.03 | 1.958 | 2.09 | 0.01 | 1.3 | 98.7 | 0.0 | 0.88 | 0.86 | 0.86 | 4.06 | 2.9 | 0.003 | 0.71 | 1.0 | 0.04 | 22.17 | 0.01 | 1.837 | 5.88 | 1.94 | 1.9 | 98.1 | 0.0 | 1.13 | 0.43 | 0.85 | 0.87 | 3.66 | 149506 | 8711 | 69 | 3684 | 95 | 0 | 0 | logfile |