Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6TU3	10586	2022-12-22	2020-01-02	2.7	2.82	2.74	2.8	0.006	0.81	0.0	0.05	16.10	0.01	1.264	9.35	8.29	5.8	94.2	0.0	-2.57	0.76	0.83	2.83	2.8	0.004	0.68	0.0	0.05	17.63	0.01	2.042	6.62	5.83	4.4	95.6	0.0	-0.10	0.57	0.76	0.85	2.64	47002	6158	28	0	0	0	0	logfile
✔	7RFi	24443	2022-12-22	2021-07-14	2.6	2.65	—	2.6	0.014	1.87	8.0	0.11	19.44	0.01	2.335	3.63	1.61	4.0	95.6	0.4	-1.71	0.67	0.87	5.21	2.6	0.003	0.60	0.0	0.04	18.71	0.00	2.031	4.37	1.31	3.4	96.6	0.0	0.08	0.64	0.65	0.88	4.67	52194	3376	16	0	32	0	25698	logfile
✘	6YMX	10847	2022-12-22	2020-04-10	3.17	3.73	3.27	3.6	0.010	1.11	0.0	0.06	15.99	0.01	1.201	7.02	0.39	6.1	93.9	0.1	-5.84	0.76	0.85	2.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	47034	5759	47	0	38	0	0	logfile
✔	7BoU	30134	2022-12-22	2020-03-19	3.6	3.75	—	3.7	0.007	1.27	0.0	0.06	12.07	0.01	2.311	7.57	0.92	7.1	91.6	1.3	-5.82	0.79	0.82	2.04	3.7	0.003	0.87	0.0	0.04	16.25	0.00	2.114	15.66	0.33	9.0	90.8	0.2	-0.51	2.03	0.80	0.83	1.19	48708	6300	12	0	0	0	0	logfile
✔	7ADB	11722	2022-12-22	2020-09-14	4.4	7.85	—	4.4	0.003	0.65	0.0	0.04	15.59	0.00	2.026	14.98	4.90	5.3	94.7	0.0	-3.41	0.89	0.69	—	4.4	0.004	0.71	0.0	0.04	14.45	0.00	1.859	27.73	0.00	5.5	94.5	0.0	-0.95	2.54	0.96	0.87	—	51330	6331	26	75	18	15	0	logfile
✘	7M4P	23663	2022-12-22	2021-03-22	2.86	2.57	—	2.7	0.011	1.14	5.0	0.07	14.52	0.01	1.213	5.92	1.93	2.9	97.1	0.0	0.36	0.54	0.72	3.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	48616	3142	6	0	9	0	24343	logfile
✔	6W1Z	21519	2022-12-22	2020-03-04	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	48536	6156	27	0	36	0	0	logfile
✔	6PYT	20526	2022-12-22	2019-07-30	2.9	2.66	—	2.9	0.009	1.01	0.0	0.06	10.88	0.01	2.212	4.73	0.94	9.5	90.5	0.0	-4.57	0.47	0.79	3.58	2.9	0.005	0.72	0.0	0.05	17.45	0.00	2.049	8.68	5.37	9.3	90.7	0.0	-1.43	1.67	0.49	0.82	3.40	49920	6624	24	0	0	0	0	logfile
✔	7oi3	12918	2022-12-22	2021-05-11	4.0	3.35	4.05	3.9	0.009	0.71	0.0	0.04	12.95	0.00	1.666	17.98	0.30	5.9	94.1	0.0	-2.28	0.44	0.51	—	3.9	0.003	0.62	0.0	0.04	15.75	0.00	2.093	9.00	0.44	3.7	96.3	0.0	-0.15	0.97	0.54	0.72	—	47955	5910	30	90	0	0	0	logfile
✔	6UQo	20851	2022-12-22	2019-10-21	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	48522	6156	28	0	30	0	0	logfile
✔	6U8Y	20692	2022-12-22	2019-09-06	4.0	4.11	—	4.0	0.008	1.21	1.0	0.06	15.79	0.01	2.209	9.26	2.01	12.1	87.5	0.3	-5.88	0.74	0.78	—	4.0	0.004	0.86	0.0	0.05	16.69	0.00	2.028	20.35	0.62	11.2	88.7	0.1	-2.39	0.69	0.74	0.78	—	48364	6140	30	0	6	0	0	logfile
✔	7DR7	30825	2022-12-22	2020-12-26	3.3	3.47	—	3.4	0.004	0.61	0.0	0.04	8.33	0.00	2.151	10.02	0.29	3.8	96.0	0.1	-3.04	0.73	0.78	2.92	3.4	0.003	0.67	0.0	0.04	15.88	0.00	2.084	11.81	0.47	3.3	96.7	0.1	0.06	2.12	0.74	0.82	2.42	48304	6220	28	0	0	0	0	logfile
✔	7ADC	11723	2022-12-22	2020-09-14	4.0	5.22	—	3.9	0.003	0.60	0.0	0.04	15.52	0.00	1.950	13.17	3.78	4.6	95.4	0.0	-2.77	0.90	0.75	—	3.9	0.004	0.75	0.0	0.04	16.05	0.00	1.848	23.70	0.26	5.5	94.5	0.0	-0.39	1.50	0.95	0.87	—	51565	6330	26	87	18	15	0	logfile
✔	7oE0	12856	2022-12-22	2021-04-30	2.69	2.88	2.81	2.8	0.014	1.07	0.0	0.06	16.90	0.01	1.980	24.31	0.00	10.1	89.9	0.0	-2.59	0.77	0.72	2.51	2.8	0.005	0.69	0.0	0.04	16.73	0.00	2.014	16.95	2.20	8.8	91.2	0.0	-1.28	0.38	0.77	0.71	1.97	50296	2208	29	1510	0	530	0	logfile
✔	6M0R	30034	2022-12-22	2020-02-22	2.7	2.84	—	2.9	0.011	0.95	0.0	0.05	14.85	0.01	2.036	1.35	0.00	1.4	98.6	0.0	-4.42	0.68	0.72	1.37	2.8	0.005	0.62	0.0	0.04	16.00	0.00	1.318	4.64	1.49	2.0	98.0	0.0	-0.66	2.04	0.74	0.84	2.97	46354	2915	43	0	37	184	22687	logfile
✔	7ADE	11725	2022-12-22	2020-09-14	4.2	6.36	—	4.1	0.003	0.59	0.0	0.04	15.20	0.00	1.954	13.61	3.12	4.6	95.3	0.0	-3.15	0.91	0.76	—	4.1	0.004	0.68	0.0	0.04	14.31	0.00	1.842	23.02	0.02	5.2	94.8	0.0	-0.74	1.46	0.95	0.87	—	51553	6315	26	92	18	15	0	logfile
✔	7KDV	22830	2022-12-22	2020-10-09	4.59	8.08	5.28	6.0	0.004	0.82	0.0	0.05	12.35	0.01	2.109	13.08	0.98	5.4	94.2	0.4	-1.39	0.88	0.72	—	6.0	0.003	0.72	0.0	0.04	12.46	0.01	1.782	21.76	0.00	4.3	95.7	0.0	-0.40	1.66	0.94	0.86	—	51696	6312	42	0	72	0	0	logfile
✔	7EEB	31076	2022-12-22	2021-03-18	2.9	3.13	—	3.1	0.008	1.12	34.0	0.08	14.16	0.01	1.419	23.48	2.98	6.1	93.2	0.7	-0.99	0.65	0.73	2.59	3.1	0.005	0.79	0.0	0.05	16.37	0.00	2.108	9.42	2.86	6.2	93.6	0.2	-0.22	0.76	0.70	0.83	2.90	47874	5975	36	0	95	0	0	logfile
✔	7EA3	31038	2022-12-22	2021-03-06	4.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49714	6974	24	0	0	0	0	logfile
✔	7E8S	31021	2022-12-22	2021-03-02	4.36	4.87	—	4.2	0.007	1.44	6.0	0.08	14.38	0.01	1.149	8.17	0.55	9.7	89.4	0.8	-4.63	0.75	0.47	—	3.9	0.009	1.22	0.0	0.06	13.84	0.01	1.861	42.86	0.02	15.5	84.3	0.3	-3.40	1.27	0.87	0.73	—	46554	6572	22	0	0	0	0	logfile

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