Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7DTW	30856	2022-07-03	2021-01-06	4.5	4.74	—	3.6	0.007	0.99	0.0	0.06	13.61	0.01	2.267	9.20	0.00	10.3	89.7	0.0	-4.26	0.71	0.78	—	3.7	0.002	0.59	0.0	0.05	12.54	0.00	2.212	7.71	0.00	8.4	91.6	0.0	-1.22	0.53	0.71	0.79	—	10250	1556	8	0	14	0	0	logfile
✔	7JL3	22371	2022-07-06	2020-07-29	4.2	5.32	—	5.0	0.004	1.32	2.0	0.05	15.45	0.00	1.999	11.90	1.45	2.9	97.1	0.0	0.40	0.87	0.78	—	5.0	0.003	0.93	0.0	0.04	14.52	0.00	1.875	13.08	0.00	3.6	96.4	0.0	1.19	0.75	0.88	0.82	—	21219	2457	11	84	12	0	0	logfile
✔	7BQT	30155	2022-07-07	2020-03-25	4.8	4.89	—	4.8	0.006	1.07	0.0	0.06	15.96	0.01	2.230	11.08	0.66	6.3	93.7	0.0	-4.15	0.57	0.79	—	4.8	0.005	0.99	0.0	0.05	13.63	0.01	2.074	20.61	0.00	6.7	93.3	0.0	-3.24	2.35	0.54	0.76	—	39180	4860	12	0	0	0	0	logfile
✔	7ABH	11696	2022-07-04	2020-09-07	4.5	4.60	—	4.4	0.003	0.63	0.0	0.05	9.27	0.00	1.529	2.09	0.00	6.0	93.7	0.2	-2.78	0.75	0.77	—	4.4	0.002	0.63	0.0	0.04	9.50	0.00	2.174	3.05	0.00	6.2	93.8	0.0	-0.31	1.29	0.77	0.80	—	17922	3288	16	65	0	0	0	logfile
✔	7KPW	22990	2022-07-03	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.8	0.005	0.86	0.0	0.04	6.91	0.00	2.059	5.41	0.00	14.6	84.8	0.6	-1.66	2.04	0.83	0.83	—	4313	865	1	0	0	0	0	logfile
✔	7AAV	11693	2022-07-05	2020-09-04	4.2	4.27	—	4.1	0.003	0.78	0.0	0.15	12.59	0.01	2.116	1.55	0.18	8.9	91.1	0.1	-6.29	0.76	0.77	—	4.1	0.003	0.67	0.0	0.04	13.49	0.00	1.702	5.58	0.00	11.8	88.2	0.0	-1.20	0.52	0.78	0.80	—	25867	3970	19	181	3	0	0	logfile
✔	7K1V	22630	2022-07-03	2020-09-08	4.6	4.95	—	4.8	0.008	1.12	0.0	0.06	15.77	0.01	2.159	13.77	0.40	11.0	89.0	0.0	-4.04	0.71	0.71	—	4.8	0.003	0.71	0.0	0.04	14.11	0.01	2.178	18.81	0.00	5.2	94.8	0.0	-1.01	1.44	0.70	0.75	—	4971	626	1	0	0	0	0	logfile
✔	7DRW	30828	2022-07-04	2020-12-29	4.2	4.34	—	4.3	0.002	0.53	0.0	0.04	7.88	0.00	2.196	8.24	0.00	3.0	96.9	0.1	-2.45	0.62	0.49	—	4.3	0.004	0.76	0.0	0.04	13.14	0.01	2.032	17.21	0.03	2.7	97.2	0.1	0.39	1.84	0.73	0.68	—	71650	9108	42	0	0	0	0	logfile
✔	7CYN	30501	2022-07-04	2020-09-03	4.2	5.28	—	4.4	0.002	0.51	0.0	0.04	12.54	0.00	2.204	9.30	0.09	5.6	94.4	0.1	-2.47	0.67	0.65	—	4.4	0.003	0.74	0.0	0.04	12.80	0.00	2.099	18.87	0.00	5.6	94.4	0.0	-0.60	1.48	0.72	0.80	—	20432	2538	8	0	6	0	0	logfile
✔	7ADB	11722	2022-07-08	2020-09-14	4.4	7.85	—	4.4	0.003	0.65	0.0	0.04	15.59	0.00	2.026	14.98	4.90	5.3	94.7	0.0	-3.41	0.89	0.69	—	4.4	0.003	0.67	0.0	0.04	14.44	0.00	1.889	22.13	0.02	4.7	95.3	0.0	-0.73	1.41	0.95	0.87	—	51330	6331	26	75	18	15	0	logfile
✔	6ZD0	11172	2022-07-03	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	4.3	0.003	0.74	0.0	0.04	5.33	0.00	2.199	10.22	0.00	19.5	80.1	0.4	-4.32	2.53	0.59	0.57	—	7962	1611	6	0	0	0	0	logfile
✔	7KZN	23083	2022-07-06	2020-12-10	4.0	2.94	—	2.2	0.010	1.36	7.0	0.07	14.78	0.01	2.202	10.93	0.48	10.0	89.8	0.2	-3.22	0.70	0.67	—	2.2	0.008	0.97	0.0	0.05	16.52	0.01	1.712	18.30	0.26	8.6	91.3	0.1	-1.60	1.45	0.68	0.64	—	31205	4099	19	0	289	0	0	logfile
✔	7KAo	22778	2022-07-03	2020-10-01	4.0	4.59	4.08	4.2	0.003	0.53	0.0	0.04	11.87	0.00	2.202	7.75	0.00	2.3	97.7	0.0	-1.25	0.65	0.84	—	4.2	0.007	0.80	0.0	0.04	14.15	0.00	2.105	14.70	0.45	3.8	96.2	0.0	1.16	1.25	0.66	0.85	—	10502	1349	6	0	0	0	0	logfile
✔	7ADC	11723	2022-07-08	2020-09-14	4.0	5.22	—	3.9	0.003	0.60	0.0	0.04	15.52	0.00	1.950	13.17	3.78	4.6	95.4	0.0	-2.77	0.90	0.75	—	3.9	0.005	0.79	0.0	0.04	16.08	0.00	1.836	25.77	0.20	5.8	94.2	0.0	-0.59	1.96	0.95	0.88	—	51565	6330	26	87	18	15	0	logfile
✔	7DTU	30854	2022-07-03	2021-01-06	4.4	4.54	—	3.7	0.006	0.89	0.0	0.06	14.43	0.01	2.277	6.95	0.00	9.4	90.6	0.0	-3.95	0.68	0.79	—	3.7	0.004	0.63	0.0	0.04	13.10	0.00	2.155	14.77	0.00	7.7	92.3	0.0	-0.78	1.49	0.68	0.80	—	10846	1558	8	0	14	0	0	logfile
✔	6ZPG	11338	2022-07-03	2020-07-08	4.6	4.29	—	7.0	0.004	0.99	0.0	0.05	15.64	0.01	2.313	5.51	0.25	5.6	94.4	0.0	-3.85	0.60	0.55	—	6.9	0.003	0.85	0.0	0.05	15.43	0.00	2.151	21.12	0.00	7.4	92.6	0.0	-0.02	2.62	0.63	0.61	—	3808	463	1	0	0	0	0	logfile
✔	6WL1	21815	2022-07-04	2020-04-17	4.0	4.02	—	4.0	0.007	0.81	0.0	0.05	7.85	0.00	2.413	3.17	0.00	0.0	100.0	0.0	-1.08	0.71	0.85	—	4.0	0.004	0.51	0.0	0.04	16.18	0.00	2.242	6.18	1.33	0.0	100.0	0.0	6.14	0.73	0.72	0.86	—	14612	1872	52	0	0	0	0	logfile
✔	7D08	30526	2022-07-04	2020-09-09	4.0	4.11	—	4.0	0.008	1.25	2.0	0.06	17.83	0.01	1.987	24.08	9.39	11.1	87.3	1.6	-5.80	0.77	0.80	—	4.0	0.005	0.83	0.0	0.04	16.75	0.00	2.108	13.79	0.59	9.4	90.6	0.0	-2.19	0.82	0.77	0.80	—	17802	2374	14	0	2	0	0	logfile
✔	7DAG	30625	2022-07-07	2020-10-16	4.37	7.60	—	4.4	0.007	1.47	7.0	0.07	17.81	0.01	1.992	40.19	15.66	10.3	89.6	0.1	-2.99	0.80	0.69	—	4.4	0.003	0.78	0.0	0.04	12.87	0.00	2.056	23.06	0.00	6.8	93.2	0.0	-1.11	1.27	0.82	0.77	—	45976	6069	8	0	0	0	0	logfile
✘	7KDV	22830	2022-07-08	2020-10-09	4.59	8.08	5.28	6.0	0.004	0.82	0.0	0.05	12.35	0.01	2.109	13.08	0.98	5.4	94.2	0.4	-1.39	0.88	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	51696	6312	42	0	72	0	0	logfile

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