Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6EF1	9043	2022-12-15	2018-08-15	4.73	3.61	—	4.2	0.009	0.99	0.0	0.05	11.78	0.01	2.040	7.30	0.00	14.5	85.5	0.0	-5.20	0.59	0.78	—	4.2	0.005	0.81	0.0	0.05	12.77	0.00	2.102	13.62	0.00	9.4	90.6	0.0	-2.26	1.34	0.60	0.80	—	23658	3294	20	0	6	0	0	logfile
✔	6Bo4	7118	2022-12-14	2017-11-18	4.0	4.00	—	3.8	0.008	1.32	0.0	0.06	11.91	0.01	2.208	16.64	0.75	9.5	90.3	0.2	-4.58	0.78	0.76	—	3.8	0.003	0.86	0.0	0.04	14.06	0.00	2.141	15.99	0.06	8.4	91.6	0.0	-1.14	0.72	0.78	0.76	—	18432	2500	4	0	0	0	0	logfile
✔	5W1R	8751	2022-12-15	2017-06-04	4.4	4.48	—	4.4	0.006	1.21	2.0	0.06	14.97	0.01	1.238	42.76	1.30	15.6	79.1	5.4	-5.31	0.66	0.69	—	4.4	0.003	0.89	0.0	0.04	13.29	0.01	2.079	14.33	0.00	10.0	89.2	0.7	-1.81	1.16	0.66	0.69	—	25559	3563	1	0	0	0	0	logfile
✔	6N1W	9320	2022-12-16	2018-11-12	4.2	4.55	—	4.3	0.005	0.82	0.0	0.05	12.95	0.01	2.314	5.82	7.06	5.3	94.7	0.0	-3.05	0.81	0.80	—	4.3	0.004	0.74	0.0	0.04	12.61	0.01	2.091	18.01	0.00	7.3	92.7	0.0	-1.22	1.40	0.82	0.82	—	31905	3852	66	0	138	0	0	logfile
✔	6G4W	4349	2022-12-21	2018-03-28	4.5	5.22	—	4.4	0.006	1.11	2.0	0.07	21.52	0.01	0.760	5.05	0.00	8.2	91.5	0.3	-3.51	0.65	0.51	—	4.3	0.004	0.70	0.0	0.03	23.60	0.00	2.004	11.37	0.00	9.6	90.3	0.1	-1.00	2.53	0.87	0.62	—	45223	4589	31	1563	768	0	0	logfile
✔	6HV8	0287	2022-12-12	2018-10-10	4.4	4.51	—	4.4	0.009	1.62	2.0	0.08	10.20	0.01	1.472	9.02	1.31	22.1	77.3	0.6	-4.84	0.74	0.72	—	4.4	0.003	0.86	0.0	0.05	12.68	0.00	2.153	15.07	0.00	13.6	86.4	0.0	-2.57	1.05	0.74	0.71	—	9206	1184	2	0	2	0	0	logfile
✔	6EF3	9045	2022-12-21	2018-08-15	4.17	3.04	—	3.8	0.016	1.11	0.0	0.07	11.79	0.01	1.340	5.82	0.07	14.7	85.2	0.0	-5.91	0.65	0.81	—	3.8	0.008	0.91	0.0	0.05	13.29	0.01	2.059	11.41	0.07	9.6	90.4	0.0	-2.73	0.74	0.67	0.84	—	44271	5824	30	0	6	0	0	logfile
✘	6JSi	9882	2022-12-19	2019-04-08	4.7	4.70	—	4.6	0.007	1.48	0.0	0.06	15.33	0.01	2.231	10.68	2.42	23.2	72.3	4.5	-6.05	0.64	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62820	5844	9	0	4044	0	0	logfile
✔	6i26	0328	2022-12-14	2018-10-31	4.3	4.37	—	4.2	0.005	0.89	0.0	0.05	8.22	0.01	0.411	6.12	0.50	6.4	93.3	0.3	-6.25	0.75	0.60	—	4.2	0.002	0.67	0.0	0.04	10.66	0.00	2.210	5.49	0.07	5.9	94.1	0.0	0.04	0.98	0.84	0.77	—	22765	3366	1	0	221	0	0	logfile
✔	6RWA	10036	2022-12-17	2019-06-04	4.0	4.09	—	3.9	0.008	1.06	0.0	0.06	10.14	0.01	2.231	6.05	0.00	5.8	94.1	0.1	-2.91	0.85	0.80	—	3.9	0.003	0.73	0.0	0.04	15.29	0.00	2.078	14.27	0.27	5.6	94.4	0.0	0.13	1.54	0.86	0.83	—	94565	11805	5	0	0	0	0	logfile
✔	5Z3U	6882	2022-12-13	2018-01-08	4.31	4.01	—	3.9	0.011	0.98	0.0	0.05	24.03	0.01	2.030	19.01	0.09	9.0	91.0	0.0	-5.01	0.77	0.81	—	3.9	0.004	0.64	0.0	0.04	24.58	0.00	2.070	11.85	0.00	5.0	95.0	0.0	0.27	0.79	0.75	0.76	—	16766	1341	12	292	3	0	0	logfile
✔	5Z3V	6883	2022-12-13	2018-01-08	4.22	3.73	—	3.7	0.004	0.63	0.0	0.04	23.01	0.00	2.160	13.07	0.00	7.8	92.2	0.0	-2.72	0.69	0.74	—	3.7	0.003	0.63	0.0	0.04	24.49	0.00	2.166	11.34	0.09	4.7	95.2	0.1	0.59	0.85	0.70	0.73	—	16758	1339	12	292	3	0	0	logfile
✔	6CUE	7621	2022-12-16	2018-03-26	4.0	4.33	—	4.1	0.007	0.95	0.0	0.07	9.98	0.01	2.121	6.24	0.21	7.4	92.6	0.0	-3.55	0.82	0.83	—	4.0	0.004	0.74	0.0	0.04	13.40	0.00	2.111	13.44	0.39	7.5	92.5	0.0	-1.40	1.42	0.82	0.83	—	31692	3849	66	0	114	0	0	logfile
✔	6EF2	9044	2022-12-15	2018-08-15	4.27	3.17	—	4.0	0.011	1.02	0.0	0.06	11.43	0.01	2.139	6.21	0.00	13.4	86.5	0.0	-5.32	0.62	0.80	—	4.0	0.003	0.75	0.0	0.05	12.65	0.00	2.123	9.84	0.08	6.1	93.9	0.0	-1.83	1.63	0.63	0.82	—	24659	3290	20	0	6	0	0	logfile
✔	5YKF	6832	2022-12-22	2017-10-14	4.33	4.45	4.32	4.3	0.006	0.81	4.0	0.05	13.65	0.01	2.030	15.44	8.16	4.4	95.1	0.4	-2.48	0.78	0.77	—	4.3	0.003	0.69	0.0	0.04	12.72	0.00	2.183	12.44	0.00	4.5	95.5	0.1	0.66	4.57	0.79	0.79	—	50988	6536	15	0	12	0	0	logfile
✔	6RAZ	4788	2022-12-20	2019-04-08	4.46	4.58	4.41	4.5	0.011	1.60	29.0	0.14	18.54	0.01	1.308	23.43	6.20	17.7	81.4	1.0	-5.70	0.65	0.65	—	4.5	0.003	0.86	0.0	0.05	15.49	0.00	2.122	17.42	0.17	12.6	87.4	0.0	-3.30	3.62	0.66	0.64	—	38294	4764	18	23	6	0	0	logfile
✔	6EZ8	3984	2022-12-14	2017-11-14	4.0	4.07	—	4.1	0.007	1.29	0.0	0.06	11.10	0.01	2.277	4.92	0.83	6.1	93.6	0.3	-5.17	0.61	0.77	—	4.0	0.003	0.76	0.0	0.04	15.84	0.00	2.092	8.08	0.79	4.8	95.2	0.0	-1.78	1.61	0.62	0.80	—	20491	2621	2	0	0	0	0	logfile
✔	6UES	20755	2022-12-11	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	6DBV	7851	2022-12-14	2018-05-03	4.29	4.43	—	4.3	0.006	0.85	0.0	0.05	22.47	0.01	1.293	23.30	0.06	10.8	89.1	0.2	-4.29	0.81	0.78	—	4.3	0.004	0.75	0.0	0.04	21.40	0.00	1.780	18.67	0.00	6.3	93.6	0.1	-1.06	0.93	0.83	0.82	—	19958	1939	10	222	6	0	0	logfile
✔	6TH3	10502	2022-12-12	2019-11-18	4.0	4.17	4.09	4.0	0.007	1.10	0.0	0.05	10.47	0.01	2.268	4.52	0.00	16.5	83.5	0.0	-5.42	0.64	0.56	—	4.0	0.003	0.83	0.0	0.05	15.42	0.01	2.188	10.64	0.66	12.7	87.3	0.0	-1.66	1.68	0.74	0.76	—	60600	7800	75	0	0	0	0	logfile

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