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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6EF1 | 9043 | 2022-12-15 | 2018-08-15 | 4.73 | 3.61 | — | 4.2 | 0.009 | 0.99 | 0.0 | 0.05 | 11.78 | 0.01 | 2.040 | 7.30 | 0.00 | 14.5 | 85.5 | 0.0 | -5.20 | 0.59 | 0.78 | — | 4.2 | 0.005 | 0.81 | 0.0 | 0.05 | 12.77 | 0.00 | 2.102 | 13.62 | 0.00 | 9.4 | 90.6 | 0.0 | -2.26 | 1.34 | 0.60 | 0.80 | — | 23658 | 3294 | 20 | 0 | 6 | 0 | 0 | logfile |
✔ | 6Bo4 | 7118 | 2022-12-14 | 2017-11-18 | 4.0 | 4.00 | — | 3.8 | 0.008 | 1.32 | 0.0 | 0.06 | 11.91 | 0.01 | 2.208 | 16.64 | 0.75 | 9.5 | 90.3 | 0.2 | -4.58 | 0.78 | 0.76 | — | 3.8 | 0.003 | 0.86 | 0.0 | 0.04 | 14.06 | 0.00 | 2.141 | 15.99 | 0.06 | 8.4 | 91.6 | 0.0 | -1.14 | 0.72 | 0.78 | 0.76 | — | 18432 | 2500 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5W1R | 8751 | 2022-12-15 | 2017-06-04 | 4.4 | 4.48 | — | 4.4 | 0.006 | 1.21 | 2.0 | 0.06 | 14.97 | 0.01 | 1.238 | 42.76 | 1.30 | 15.6 | 79.1 | 5.4 | -5.31 | 0.66 | 0.69 | — | 4.4 | 0.003 | 0.89 | 0.0 | 0.04 | 13.29 | 0.01 | 2.079 | 14.33 | 0.00 | 10.0 | 89.2 | 0.7 | -1.81 | 1.16 | 0.66 | 0.69 | — | 25559 | 3563 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N1W | 9320 | 2022-12-16 | 2018-11-12 | 4.2 | 4.55 | — | 4.3 | 0.005 | 0.82 | 0.0 | 0.05 | 12.95 | 0.01 | 2.314 | 5.82 | 7.06 | 5.3 | 94.7 | 0.0 | -3.05 | 0.81 | 0.80 | — | 4.3 | 0.004 | 0.74 | 0.0 | 0.04 | 12.61 | 0.01 | 2.091 | 18.01 | 0.00 | 7.3 | 92.7 | 0.0 | -1.22 | 1.40 | 0.82 | 0.82 | — | 31905 | 3852 | 66 | 0 | 138 | 0 | 0 | logfile |
✔ | 6G4W | 4349 | 2022-12-21 | 2018-03-28 | 4.5 | 5.22 | — | 4.4 | 0.006 | 1.11 | 2.0 | 0.07 | 21.52 | 0.01 | 0.760 | 5.05 | 0.00 | 8.2 | 91.5 | 0.3 | -3.51 | 0.65 | 0.51 | — | 4.3 | 0.004 | 0.70 | 0.0 | 0.03 | 23.60 | 0.00 | 2.004 | 11.37 | 0.00 | 9.6 | 90.3 | 0.1 | -1.00 | 2.53 | 0.87 | 0.62 | — | 45223 | 4589 | 31 | 1563 | 768 | 0 | 0 | logfile |
✔ | 6HV8 | 0287 | 2022-12-12 | 2018-10-10 | 4.4 | 4.51 | — | 4.4 | 0.009 | 1.62 | 2.0 | 0.08 | 10.20 | 0.01 | 1.472 | 9.02 | 1.31 | 22.1 | 77.3 | 0.6 | -4.84 | 0.74 | 0.72 | — | 4.4 | 0.003 | 0.86 | 0.0 | 0.05 | 12.68 | 0.00 | 2.153 | 15.07 | 0.00 | 13.6 | 86.4 | 0.0 | -2.57 | 1.05 | 0.74 | 0.71 | — | 9206 | 1184 | 2 | 0 | 2 | 0 | 0 | logfile |
✔ | 6EF3 | 9045 | 2022-12-21 | 2018-08-15 | 4.17 | 3.04 | — | 3.8 | 0.016 | 1.11 | 0.0 | 0.07 | 11.79 | 0.01 | 1.340 | 5.82 | 0.07 | 14.7 | 85.2 | 0.0 | -5.91 | 0.65 | 0.81 | — | 3.8 | 0.008 | 0.91 | 0.0 | 0.05 | 13.29 | 0.01 | 2.059 | 11.41 | 0.07 | 9.6 | 90.4 | 0.0 | -2.73 | 0.74 | 0.67 | 0.84 | — | 44271 | 5824 | 30 | 0 | 6 | 0 | 0 | logfile |
✘ | 6JSi | 9882 | 2022-12-19 | 2019-04-08 | 4.7 | 4.70 | — | 4.6 | 0.007 | 1.48 | 0.0 | 0.06 | 15.33 | 0.01 | 2.231 | 10.68 | 2.42 | 23.2 | 72.3 | 4.5 | -6.05 | 0.64 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62820 | 5844 | 9 | 0 | 4044 | 0 | 0 | logfile |
✔ | 6i26 | 0328 | 2022-12-14 | 2018-10-31 | 4.3 | 4.37 | — | 4.2 | 0.005 | 0.89 | 0.0 | 0.05 | 8.22 | 0.01 | 0.411 | 6.12 | 0.50 | 6.4 | 93.3 | 0.3 | -6.25 | 0.75 | 0.60 | — | 4.2 | 0.002 | 0.67 | 0.0 | 0.04 | 10.66 | 0.00 | 2.210 | 5.49 | 0.07 | 5.9 | 94.1 | 0.0 | 0.04 | 0.98 | 0.84 | 0.77 | — | 22765 | 3366 | 1 | 0 | 221 | 0 | 0 | logfile |
✔ | 6RWA | 10036 | 2022-12-17 | 2019-06-04 | 4.0 | 4.09 | — | 3.9 | 0.008 | 1.06 | 0.0 | 0.06 | 10.14 | 0.01 | 2.231 | 6.05 | 0.00 | 5.8 | 94.1 | 0.1 | -2.91 | 0.85 | 0.80 | — | 3.9 | 0.003 | 0.73 | 0.0 | 0.04 | 15.29 | 0.00 | 2.078 | 14.27 | 0.27 | 5.6 | 94.4 | 0.0 | 0.13 | 1.54 | 0.86 | 0.83 | — | 94565 | 11805 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 5Z3U | 6882 | 2022-12-13 | 2018-01-08 | 4.31 | 4.01 | — | 3.9 | 0.011 | 0.98 | 0.0 | 0.05 | 24.03 | 0.01 | 2.030 | 19.01 | 0.09 | 9.0 | 91.0 | 0.0 | -5.01 | 0.77 | 0.81 | — | 3.9 | 0.004 | 0.64 | 0.0 | 0.04 | 24.58 | 0.00 | 2.070 | 11.85 | 0.00 | 5.0 | 95.0 | 0.0 | 0.27 | 0.79 | 0.75 | 0.76 | — | 16766 | 1341 | 12 | 292 | 3 | 0 | 0 | logfile |
✔ | 5Z3V | 6883 | 2022-12-13 | 2018-01-08 | 4.22 | 3.73 | — | 3.7 | 0.004 | 0.63 | 0.0 | 0.04 | 23.01 | 0.00 | 2.160 | 13.07 | 0.00 | 7.8 | 92.2 | 0.0 | -2.72 | 0.69 | 0.74 | — | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 24.49 | 0.00 | 2.166 | 11.34 | 0.09 | 4.7 | 95.2 | 0.1 | 0.59 | 0.85 | 0.70 | 0.73 | — | 16758 | 1339 | 12 | 292 | 3 | 0 | 0 | logfile |
✔ | 6CUE | 7621 | 2022-12-16 | 2018-03-26 | 4.0 | 4.33 | — | 4.1 | 0.007 | 0.95 | 0.0 | 0.07 | 9.98 | 0.01 | 2.121 | 6.24 | 0.21 | 7.4 | 92.6 | 0.0 | -3.55 | 0.82 | 0.83 | — | 4.0 | 0.004 | 0.74 | 0.0 | 0.04 | 13.40 | 0.00 | 2.111 | 13.44 | 0.39 | 7.5 | 92.5 | 0.0 | -1.40 | 1.42 | 0.82 | 0.83 | — | 31692 | 3849 | 66 | 0 | 114 | 0 | 0 | logfile |
✔ | 6EF2 | 9044 | 2022-12-15 | 2018-08-15 | 4.27 | 3.17 | — | 4.0 | 0.011 | 1.02 | 0.0 | 0.06 | 11.43 | 0.01 | 2.139 | 6.21 | 0.00 | 13.4 | 86.5 | 0.0 | -5.32 | 0.62 | 0.80 | — | 4.0 | 0.003 | 0.75 | 0.0 | 0.05 | 12.65 | 0.00 | 2.123 | 9.84 | 0.08 | 6.1 | 93.9 | 0.0 | -1.83 | 1.63 | 0.63 | 0.82 | — | 24659 | 3290 | 20 | 0 | 6 | 0 | 0 | logfile |
✔ | 5YKF | 6832 | 2022-12-22 | 2017-10-14 | 4.33 | 4.45 | 4.32 | 4.3 | 0.006 | 0.81 | 4.0 | 0.05 | 13.65 | 0.01 | 2.030 | 15.44 | 8.16 | 4.4 | 95.1 | 0.4 | -2.48 | 0.78 | 0.77 | — | 4.3 | 0.003 | 0.69 | 0.0 | 0.04 | 12.72 | 0.00 | 2.183 | 12.44 | 0.00 | 4.5 | 95.5 | 0.1 | 0.66 | 4.57 | 0.79 | 0.79 | — | 50988 | 6536 | 15 | 0 | 12 | 0 | 0 | logfile |
✔ | 6RAZ | 4788 | 2022-12-20 | 2019-04-08 | 4.46 | 4.58 | 4.41 | 4.5 | 0.011 | 1.60 | 29.0 | 0.14 | 18.54 | 0.01 | 1.308 | 23.43 | 6.20 | 17.7 | 81.4 | 1.0 | -5.70 | 0.65 | 0.65 | — | 4.5 | 0.003 | 0.86 | 0.0 | 0.05 | 15.49 | 0.00 | 2.122 | 17.42 | 0.17 | 12.6 | 87.4 | 0.0 | -3.30 | 3.62 | 0.66 | 0.64 | — | 38294 | 4764 | 18 | 23 | 6 | 0 | 0 | logfile |
✔ | 6EZ8 | 3984 | 2022-12-14 | 2017-11-14 | 4.0 | 4.07 | — | 4.1 | 0.007 | 1.29 | 0.0 | 0.06 | 11.10 | 0.01 | 2.277 | 4.92 | 0.83 | 6.1 | 93.6 | 0.3 | -5.17 | 0.61 | 0.77 | — | 4.0 | 0.003 | 0.76 | 0.0 | 0.04 | 15.84 | 0.00 | 2.092 | 8.08 | 0.79 | 4.8 | 95.2 | 0.0 | -1.78 | 1.61 | 0.62 | 0.80 | — | 20491 | 2621 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UES | 20755 | 2022-12-11 | 2019-09-23 | 3.7 | 3.94 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 17.15 | 0.00 | 2.100 | 7.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.76 | — | 3.3 | 0.007 | 0.87 | 0.0 | 0.04 | 21.10 | 0.01 | 1.792 | 36.17 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.34 | 0.88 | 0.83 | — | 3842 | 0 | 1 | 119 | 0 | 0 | 1291 | logfile |
✔ | 6DBV | 7851 | 2022-12-14 | 2018-05-03 | 4.29 | 4.43 | — | 4.3 | 0.006 | 0.85 | 0.0 | 0.05 | 22.47 | 0.01 | 1.293 | 23.30 | 0.06 | 10.8 | 89.1 | 0.2 | -4.29 | 0.81 | 0.78 | — | 4.3 | 0.004 | 0.75 | 0.0 | 0.04 | 21.40 | 0.00 | 1.780 | 18.67 | 0.00 | 6.3 | 93.6 | 0.1 | -1.06 | 0.93 | 0.83 | 0.82 | — | 19958 | 1939 | 10 | 222 | 6 | 0 | 0 | logfile |
✔ | 6TH3 | 10502 | 2022-12-12 | 2019-11-18 | 4.0 | 4.17 | 4.09 | 4.0 | 0.007 | 1.10 | 0.0 | 0.05 | 10.47 | 0.01 | 2.268 | 4.52 | 0.00 | 16.5 | 83.5 | 0.0 | -5.42 | 0.64 | 0.56 | — | 4.0 | 0.003 | 0.83 | 0.0 | 0.05 | 15.42 | 0.01 | 2.188 | 10.64 | 0.66 | 12.7 | 87.3 | 0.0 | -1.66 | 1.68 | 0.74 | 0.76 | — | 60600 | 7800 | 75 | 0 | 0 | 0 | 0 | logfile |