Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Q16	20556	2023-04-23	2019-08-02	4.1	4.11	—	4.1	0.007	1.05	0.0	0.06	14.24	0.01	2.214	3.99	0.67	3.6	96.4	0.0	-5.13	0.85	0.83	—	4.1	0.003	0.69	0.0	0.04	13.91	0.00	2.101	9.20	0.01	3.7	96.3	0.0	-0.13	0.76	0.86	0.84	—	118198	14787	93	0	0	0	0	logfile
✔	7JJJ	22354	2023-04-20	2020-07-26	4.5	4.63	4.47	4.5	0.020	1.79	0.0	0.13	10.01	0.01	2.377	0.90	0.07	2.0	98.0	0.0	0.68	0.79	0.80	—	4.5	0.004	0.71	0.0	0.05	12.38	0.00	2.113	11.30	0.00	4.0	96.0	0.0	-0.22	1.44	0.80	0.83	—	54614	6674	92	0	182	0	0	logfile
✘	7WG5	32477	2023-04-21	2021-12-28	3.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	112687	11759	92	0	545	0	0	logfile
✔	6AZ3	7025	2023-04-26	2017-09-09	2.5	3.08	—	3.1	0.012	1.29	0.0	0.06	16.54	0.03	1.349	4.53	0.96	6.4	93.4	0.2	-4.53	0.54	0.78	5.15	3.1	0.006	0.88	0.0	0.04	17.29	0.01	1.945	8.72	3.08	6.3	93.6	0.1	-1.41	0.34	0.54	0.80	3.89	126561	6390	91	3507	44	1019	0	logfile
✘	7DCo	30637	2023-04-27	2020-10-26	2.5	2.59	—	2.6	0.010	1.11	8.0	0.08	13.06	0.01	2.079	5.90	1.87	4.4	95.1	0.5	-3.91	0.53	0.65	3.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	129875	15294	91	556	24	1714	0	logfile
✔	7JU4	22481	2023-04-28	2020-08-19	3.4	3.50	—	3.7	0.004	0.70	3.0	0.05	15.00	0.00	1.923	14.97	0.04	5.8	94.2	0.0	-0.77	0.58	0.71	1.64	3.7	0.003	0.65	0.0	0.04	16.56	0.00	1.890	12.89	0.33	4.4	95.6	0.0	0.07	0.41	0.60	0.78	1.22	133504	16960	90	14	101	0	0	logfile
✔	6J3Y	9775	2023-04-26	2019-01-07	3.3	3.49	—	3.4	0.019	1.77	4.0	0.14	17.37	0.01	1.372	10.02	0.32	4.1	95.9	0.0	-5.09	0.77	0.84	3.85	3.4	0.003	0.66	0.0	0.04	16.70	0.00	2.007	12.44	0.34	3.4	96.6	0.0	0.14	0.65	0.78	0.87	2.88	70136	6984	90	0	428	0	0	logfile
✘	6TRD	10559	2023-04-28	2019-12-18	3.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	74991	6849	84	0	402	51	0	logfile
✔	8DVD	27735	2023-04-25	2022-07-28	4.12	4.71	4.34	4.3	0.007	1.07	0.0	0.07	14.38	0.00	1.932	5.05	0.69	8.0	91.9	0.1	-0.76	0.79	0.74	—	4.3	0.003	0.79	0.0	0.04	13.99	0.00	2.186	11.53	0.00	8.2	91.7	0.1	-0.98	1.74	0.83	0.80	—	20804	2137	83	0	302	0	0	logfile
✘	7F9o	31498	2023-04-23	2021-07-04	4.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	106329	11553	82	0	461	0	0	logfile
✔	6RD4	4805	2023-04-19	2019-04-12	2.9	2.95	—	2.9	0.014	1.11	0.0	0.07	14.22	0.01	0.776	6.62	0.69	4.7	95.0	0.2	-5.13	0.74	0.83	3.17	3.0	0.003	0.67	0.0	0.04	16.39	0.00	1.899	10.11	1.76	3.6	96.3	0.1	0.72	0.63	0.77	0.87	2.78	107552	14206	82	0	22	56	0	logfile
✔	7NSH	12567	2023-04-22	2021-03-07	3.2	3.39	3.12	3.3	0.003	0.53	0.0	0.05	15.69	0.00	1.187	7.76	0.02	4.2	95.8	0.1	0.71	0.80	0.84	2.70	3.3	0.002	0.55	0.0	0.04	16.92	0.00	1.115	8.46	0.33	4.0	96.0	0.0	0.81	0.52	0.79	0.89	2.50	112448	9643	79	1611	229	2	0	logfile
✔	6GB2	4370	2023-04-21	2018-04-13	3.2	3.20	3.10	3.1	0.007	1.14	0.0	0.05	17.78	0.01	1.865	9.38	10.13	4.0	95.9	0.2	-2.82	0.85	0.89	2.34	3.1	0.004	0.68	0.0	0.04	17.92	0.01	1.852	11.22	0.38	3.7	96.2	0.1	0.45	0.76	0.84	0.89	2.23	111109	9312	78	1687	225	2	0	logfile
✔	4UFT	2867	2023-04-23	2015-03-19	4.3	4.24	—	4.2	0.005	0.96	0.0	0.05	11.26	0.00	1.169	8.53	0.31	13.2	83.9	3.0	-4.63	0.54	0.70	—	4.2	0.004	0.78	0.0	0.04	13.25	0.01	2.091	11.84	0.05	8.2	90.7	1.1	-2.58	1.93	0.59	0.79	—	119847	14703	78	234	0	0	0	logfile
✘	7F4V	31455	2023-04-24	2021-06-21	2.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67641	6336	78	0	453	402	0	logfile
✘	7S3D	24821	2023-04-28	2021-09-05	2.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75150	7074	78	0	417	333	0	logfile
✔	7VRJ	32100	2023-04-27	2021-10-23	2.81	2.48	—	2.7	0.019	1.88	0.0	0.06	18.01	0.02	2.064	9.41	1.43	2.9	97.1	0.0	1.42	0.68	0.84	3.65	2.7	0.004	0.81	0.0	0.04	18.62	0.00	1.904	7.35	2.81	2.7	97.3	0.0	1.18	0.35	0.69	0.87	3.08	26309	2604	77	0	114	48	0	logfile
✘	6YP7	10865	2023-04-26	2020-04-15	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	71784	7002	77	0	325	0	0	logfile
✔	7E80	31006	2023-04-22	2021-02-28	3.67	4.02	—	3.9	0.003	0.50	4.0	0.04	10.46	0.00	2.066	8.31	1.97	4.4	95.6	0.0	0.97	0.74	0.84	1.76	3.9	0.002	0.63	0.0	0.04	13.63	0.00	2.096	10.56	0.23	3.9	96.1	0.0	0.89	0.46	0.73	0.84	1.58	114468	15296	77	0	75	0	0	logfile
✔	7R4X	14317	2023-04-28	2022-02-09	2.15	1.94	—	2.1	0.012	1.13	0.0	0.06	16.98	0.04	1.443	4.90	4.12	3.8	96.2	0.1	-0.66	0.70	0.73	4.07	2.0	0.005	1.06	0.0	0.04	17.40	0.01	1.810	12.10	2.57	3.6	96.4	0.0	0.26	0.92	0.77	0.85	4.42	77937	4792	77	1646	174	4117	0	logfile

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