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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7o71 | 12742 | 2022-12-19 | 2021-04-12 | 2.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 67428 | 8041 | 102 | 0 | 49 | 1616 | 0 | logfile |
✔ | 7LQi | 23487 | 2022-12-12 | 2021-02-13 | 3.5 | 3.92 | — | 3.9 | 0.016 | 1.40 | 0.0 | 0.03 | 20.42 | 0.00 | 2.242 | 22.86 | 5.00 | 0.0 | 100.0 | 0.0 | -3.42 | 0.62 | 0.78 | 4.80 | 3.9 | 0.051 | 2.84 | 5.0 | 0.14 | 22.95 | 0.01 | 1.918 | 120.83 | 3.83 | 46.2 | 53.8 | 0.0 | -7.03 | 1.54 | 0.65 | 0.83 | 2.47 | 8400 | 800 | 100 | 0 | 0 | 0 | 0 | logfile |
✘ | 3J06 | 5185 | 2022-12-19 | 2011-04-26 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64200 | 7750 | 100 | 150 | 0 | 0 | 0 | logfile |
✔ | 6TUP | 10593 | 2022-12-14 | 2020-01-08 | 3.2 | 3.52 | — | 3.3 | 0.011 | 1.02 | 0.0 | 0.05 | 21.23 | 0.00 | 0.032 | 54.60 | 0.00 | 0.0 | 100.0 | 0.0 | -7.04 | 0.49 | 0.47 | 1.19 | 3.4 | 0.039 | 2.56 | 0.0 | 0.24 | 27.07 | 0.01 | 1.098 | 116.88 | 1.25 | 3.2 | 96.8 | 0.0 | -2.76 | 8.49 | 0.54 | 0.59 | -0.09 | 22400 | 2300 | 100 | 300 | 0 | 0 | 0 | logfile |
✔ | 7VB9 | 31875 | 2022-12-19 | 2021-08-30 | 3.45 | 3.03 | — | 3.3 | 0.019 | 1.97 | 0.0 | 0.04 | 17.13 | 0.05 | 2.077 | 14.25 | 3.01 | 2.8 | 97.2 | 0.0 | 2.33 | 0.62 | 0.77 | 2.94 | 3.3 | 0.005 | 0.78 | 0.0 | 0.04 | 17.27 | 0.00 | 1.682 | 11.45 | 0.32 | 2.5 | 97.5 | 0.0 | 1.95 | 1.79 | 0.66 | 0.82 | 2.74 | 36474 | 3807 | 100 | 0 | 107 | 0 | 0 | logfile |
✘ | 2XEA | 1730 | 2022-12-19 | 2010-05-12 | 4.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63950 | 7700 | 100 | 150 | 0 | 0 | 0 | logfile |
✘ | 6TRC | 10558 | 2022-12-19 | 2019-12-18 | 2.98 | 3.06 | — | 3.1 | 0.010 | 1.16 | 0.0 | 0.07 | 19.32 | 0.02 | 1.220 | 9.53 | 1.42 | 7.9 | 92.1 | 0.0 | -3.92 | 0.71 | 0.79 | 3.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75591 | 6849 | 99 | 0 | 402 | 651 | 0 | logfile |
✔ | 7Q2Q | 13780 | 2022-12-12 | 2021-10-26 | 4.3 | 3.37 | — | 3.6 | 0.010 | 1.40 | 0.0 | 0.08 | 11.79 | 0.01 | 1.166 | 18.08 | 0.00 | 8.5 | 90.7 | 0.8 | -4.23 | 0.58 | 0.71 | — | 3.3 | 0.003 | 0.69 | 0.0 | 0.04 | 14.65 | 0.00 | 2.013 | 12.21 | 0.27 | 4.6 | 95.4 | 0.0 | -1.38 | 1.52 | 0.60 | 0.75 | — | 62377 | 7497 | 98 | 147 | 0 | 0 | 0 | logfile |
✔ | 7Q2S | 13782 | 2022-12-12 | 2021-10-26 | 3.7 | 3.23 | — | 3.3 | 0.010 | 1.40 | 0.0 | 0.08 | 11.79 | 0.01 | 1.217 | 18.46 | 0.00 | 8.6 | 90.7 | 0.7 | -4.24 | 0.45 | 0.63 | 1.80 | 3.2 | 0.004 | 0.81 | 0.0 | 0.04 | 17.78 | 0.00 | 2.075 | 17.99 | 0.73 | 5.7 | 94.3 | 0.0 | -2.26 | 1.12 | 0.52 | 0.68 | 1.93 | 62377 | 7497 | 98 | 147 | 0 | 0 | 0 | logfile |
✔ | 6J3Z | 9776 | 2022-12-15 | 2019-01-07 | 3.6 | 3.78 | — | 3.6 | 0.019 | 1.77 | 4.0 | 0.15 | 18.06 | 0.01 | 1.392 | 13.74 | 0.28 | 4.3 | 95.7 | 0.0 | -5.08 | 0.80 | 0.81 | 3.43 | 3.6 | 0.003 | 0.71 | 0.0 | 0.04 | 17.38 | 0.00 | 1.445 | 14.34 | 0.41 | 3.5 | 96.5 | 0.0 | -0.06 | 0.76 | 0.81 | 0.82 | 2.50 | 74619 | 6984 | 97 | 0 | 978 | 0 | 0 | logfile |
✘ | 7FiX | 31605 | 2022-12-19 | 2021-08-01 | 1.97 | 2.54 | 1.91 | 2.2 | 0.021 | 1.45 | 0.0 | 0.05 | 17.92 | 0.02 | 1.200 | 5.87 | 0.00 | 2.1 | 97.9 | 0.0 | 1.60 | 0.80 | 0.89 | 5.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 73929 | 7137 | 96 | 0 | 444 | 348 | 0 | logfile |
✔ | 6YJ4 | 10815 | 2022-12-13 | 2020-04-02 | 2.7 | 2.35 | 2.73 | 2.6 | 0.011 | 1.10 | 0.0 | 0.65 | 14.70 | 0.01 | 2.031 | 3.80 | 0.03 | 4.1 | 95.8 | 0.0 | -2.17 | 0.58 | 0.79 | 4.22 | 2.5 | 0.005 | 1.03 | 0.0 | 0.18 | 16.77 | 0.00 | 1.390 | 7.99 | 1.56 | 3.3 | 96.7 | 0.0 | 0.77 | 0.57 | 0.63 | 0.84 | 3.75 | 66311 | 8126 | 94 | 0 | 50 | 275 | 0 | logfile |
✘ | 6KAD | 9956 | 2022-12-19 | 2019-06-21 | 3.4 | 3.59 | — | 3.5 | 0.011 | 1.60 | 0.0 | 0.07 | 16.10 | 0.02 | 1.201 | 7.96 | 0.67 | 7.4 | 92.6 | 0.0 | -5.09 | 0.77 | 0.84 | 3.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105342 | 9734 | 94 | 0 | 560 | 0 | 0 | logfile |
✔ | 7JJJ | 22354 | 2022-12-11 | 2020-07-26 | 4.5 | 4.63 | 4.47 | 4.5 | 0.020 | 1.77 | 0.0 | 0.13 | 9.94 | 0.01 | 2.377 | 1.07 | 0.07 | 2.0 | 98.0 | 0.0 | 0.68 | 0.79 | 0.80 | — | 4.5 | 0.005 | 0.71 | 0.0 | 0.05 | 12.06 | 0.00 | 2.170 | 12.50 | 0.00 | 4.7 | 95.3 | 0.0 | -0.24 | 1.44 | 0.80 | 0.83 | — | 54614 | 6674 | 92 | 0 | 182 | 0 | 0 | logfile |
✔ | 6ET5 | 3951 | 2022-12-16 | 2017-10-25 | 2.87 | 4.09 | 3.11 | 3.5 | 0.025 | 2.86 | 202.0 | 0.21 | 21.56 | 0.03 | 1.592 | 33.57 | 8.13 | 12.2 | 83.7 | 4.1 | -5.05 | 0.80 | 0.85 | 3.34 | 3.5 | 0.004 | 1.01 | 0.0 | 0.05 | 18.78 | 0.00 | 2.041 | 14.82 | 1.67 | 9.2 | 90.5 | 0.3 | -0.25 | 1.31 | 0.79 | 0.85 | 3.02 | 31994 | 3492 | 92 | 0 | 75 | 0 | 0 | logfile |
✔ | 6J3Y | 9775 | 2022-12-14 | 2019-01-07 | 3.3 | 3.49 | — | 3.4 | 0.019 | 1.72 | 4.0 | 0.14 | 17.45 | 0.01 | 1.372 | 10.17 | 0.32 | 4.1 | 95.9 | 0.0 | -5.09 | 0.77 | 0.84 | 3.85 | 3.4 | 0.003 | 0.66 | 0.0 | 0.04 | 16.93 | 0.00 | 1.968 | 12.45 | 0.39 | 3.3 | 96.7 | 0.0 | 0.13 | 0.65 | 0.79 | 0.87 | 2.92 | 70136 | 6984 | 90 | 0 | 428 | 0 | 0 | logfile |
✘ | 7oFQ | 12875 | 2022-12-19 | 2021-05-05 | 3.08 | 2.88 | — | 3.0 | 0.010 | 1.80 | 204.0 | 0.13 | 13.81 | 0.01 | 1.189 | 3.49 | 1.96 | 5.0 | 95.0 | 0.0 | -1.69 | 0.71 | 0.88 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 80691 | 9493 | 90 | 0 | 849 | 0 | 0 | logfile |
✘ | 5XNM | 6742 | 2022-12-19 | 2017-05-23 | 3.2 | 3.28 | — | 3.3 | 0.011 | 1.67 | 0.0 | 0.08 | 16.06 | 0.02 | 1.205 | 9.94 | 0.03 | 2.3 | 97.7 | 0.0 | -2.60 | 0.71 | 0.82 | 3.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 92842 | 8712 | 90 | 0 | 486 | 0 | 0 | logfile |
✘ | 6JEo | 9807 | 2022-12-19 | 2019-02-06 | 3.3 | 3.44 | — | 3.4 | 0.009 | 1.14 | 0.0 | 0.06 | 18.11 | 0.02 | 1.212 | 7.53 | 0.24 | 4.8 | 95.2 | 0.0 | -5.26 | 0.73 | 0.81 | 4.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 94576 | 8774 | 88 | 0 | 504 | 0 | 0 | logfile |
✔ | 7V7i | 31772 | 2022-12-22 | 2021-08-21 | 3.3 | 4.09 | — | 3.8 | 0.005 | 0.59 | 0.0 | 0.05 | 13.45 | 0.00 | 2.128 | 8.36 | 0.00 | 5.4 | 94.5 | 0.2 | -0.23 | 0.86 | 0.85 | 2.37 | 3.8 | 0.004 | 0.57 | 0.0 | 0.04 | 14.85 | 0.00 | 1.991 | 7.32 | 0.18 | 5.6 | 94.3 | 0.1 | -0.25 | 0.31 | 0.87 | 0.87 | 1.93 | 51072 | 6228 | 84 | 0 | 174 | 0 | 0 | logfile |