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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6Q16 | 20556 | 2023-04-23 | 2019-08-02 | 4.1 | 4.11 | — | 4.1 | 0.007 | 1.05 | 0.0 | 0.06 | 14.24 | 0.01 | 2.214 | 3.99 | 0.67 | 3.6 | 96.4 | 0.0 | -5.13 | 0.85 | 0.83 | — | 4.1 | 0.003 | 0.69 | 0.0 | 0.04 | 13.91 | 0.00 | 2.101 | 9.20 | 0.01 | 3.7 | 96.3 | 0.0 | -0.13 | 0.76 | 0.86 | 0.84 | — | 118198 | 14787 | 93 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JJJ | 22354 | 2023-04-20 | 2020-07-26 | 4.5 | 4.63 | 4.47 | 4.5 | 0.020 | 1.79 | 0.0 | 0.13 | 10.01 | 0.01 | 2.377 | 0.90 | 0.07 | 2.0 | 98.0 | 0.0 | 0.68 | 0.79 | 0.80 | — | 4.5 | 0.004 | 0.71 | 0.0 | 0.05 | 12.38 | 0.00 | 2.113 | 11.30 | 0.00 | 4.0 | 96.0 | 0.0 | -0.22 | 1.44 | 0.80 | 0.83 | — | 54614 | 6674 | 92 | 0 | 182 | 0 | 0 | logfile |
✘ | 7WG5 | 32477 | 2023-04-21 | 2021-12-28 | 3.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112687 | 11759 | 92 | 0 | 545 | 0 | 0 | logfile |
✔ | 6AZ3 | 7025 | 2023-04-26 | 2017-09-09 | 2.5 | 3.08 | — | 3.1 | 0.012 | 1.29 | 0.0 | 0.06 | 16.54 | 0.03 | 1.349 | 4.53 | 0.96 | 6.4 | 93.4 | 0.2 | -4.53 | 0.54 | 0.78 | 5.15 | 3.1 | 0.006 | 0.88 | 0.0 | 0.04 | 17.29 | 0.01 | 1.945 | 8.72 | 3.08 | 6.3 | 93.6 | 0.1 | -1.41 | 0.34 | 0.54 | 0.80 | 3.89 | 126561 | 6390 | 91 | 3507 | 44 | 1019 | 0 | logfile |
✘ | 7DCo | 30637 | 2023-04-27 | 2020-10-26 | 2.5 | 2.59 | — | 2.6 | 0.010 | 1.11 | 8.0 | 0.08 | 13.06 | 0.01 | 2.079 | 5.90 | 1.87 | 4.4 | 95.1 | 0.5 | -3.91 | 0.53 | 0.65 | 3.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 129875 | 15294 | 91 | 556 | 24 | 1714 | 0 | logfile |
✔ | 7JU4 | 22481 | 2023-04-28 | 2020-08-19 | 3.4 | 3.50 | — | 3.7 | 0.004 | 0.70 | 3.0 | 0.05 | 15.00 | 0.00 | 1.923 | 14.97 | 0.04 | 5.8 | 94.2 | 0.0 | -0.77 | 0.58 | 0.71 | 1.64 | 3.7 | 0.003 | 0.65 | 0.0 | 0.04 | 16.56 | 0.00 | 1.890 | 12.89 | 0.33 | 4.4 | 95.6 | 0.0 | 0.07 | 0.41 | 0.60 | 0.78 | 1.22 | 133504 | 16960 | 90 | 14 | 101 | 0 | 0 | logfile |
✔ | 6J3Y | 9775 | 2023-04-26 | 2019-01-07 | 3.3 | 3.49 | — | 3.4 | 0.019 | 1.77 | 4.0 | 0.14 | 17.37 | 0.01 | 1.372 | 10.02 | 0.32 | 4.1 | 95.9 | 0.0 | -5.09 | 0.77 | 0.84 | 3.85 | 3.4 | 0.003 | 0.66 | 0.0 | 0.04 | 16.70 | 0.00 | 2.007 | 12.44 | 0.34 | 3.4 | 96.6 | 0.0 | 0.14 | 0.65 | 0.78 | 0.87 | 2.88 | 70136 | 6984 | 90 | 0 | 428 | 0 | 0 | logfile |
✘ | 6TRD | 10559 | 2023-04-28 | 2019-12-18 | 3.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 74991 | 6849 | 84 | 0 | 402 | 51 | 0 | logfile |
✔ | 8DVD | 27735 | 2023-04-25 | 2022-07-28 | 4.12 | 4.71 | 4.34 | 4.3 | 0.007 | 1.07 | 0.0 | 0.07 | 14.38 | 0.00 | 1.932 | 5.05 | 0.69 | 8.0 | 91.9 | 0.1 | -0.76 | 0.79 | 0.74 | — | 4.3 | 0.003 | 0.79 | 0.0 | 0.04 | 13.99 | 0.00 | 2.186 | 11.53 | 0.00 | 8.2 | 91.7 | 0.1 | -0.98 | 1.74 | 0.83 | 0.80 | — | 20804 | 2137 | 83 | 0 | 302 | 0 | 0 | logfile |
✘ | 7F9o | 31498 | 2023-04-23 | 2021-07-04 | 4.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 106329 | 11553 | 82 | 0 | 461 | 0 | 0 | logfile |
✔ | 6RD4 | 4805 | 2023-04-19 | 2019-04-12 | 2.9 | 2.95 | — | 2.9 | 0.014 | 1.11 | 0.0 | 0.07 | 14.22 | 0.01 | 0.776 | 6.62 | 0.69 | 4.7 | 95.0 | 0.2 | -5.13 | 0.74 | 0.83 | 3.17 | 3.0 | 0.003 | 0.67 | 0.0 | 0.04 | 16.39 | 0.00 | 1.899 | 10.11 | 1.76 | 3.6 | 96.3 | 0.1 | 0.72 | 0.63 | 0.77 | 0.87 | 2.78 | 107552 | 14206 | 82 | 0 | 22 | 56 | 0 | logfile |
✔ | 7NSH | 12567 | 2023-04-22 | 2021-03-07 | 3.2 | 3.39 | 3.12 | 3.3 | 0.003 | 0.53 | 0.0 | 0.05 | 15.69 | 0.00 | 1.187 | 7.76 | 0.02 | 4.2 | 95.8 | 0.1 | 0.71 | 0.80 | 0.84 | 2.70 | 3.3 | 0.002 | 0.55 | 0.0 | 0.04 | 16.92 | 0.00 | 1.115 | 8.46 | 0.33 | 4.0 | 96.0 | 0.0 | 0.81 | 0.52 | 0.79 | 0.89 | 2.50 | 112448 | 9643 | 79 | 1611 | 229 | 2 | 0 | logfile |
✔ | 6GB2 | 4370 | 2023-04-21 | 2018-04-13 | 3.2 | 3.20 | 3.10 | 3.1 | 0.007 | 1.14 | 0.0 | 0.05 | 17.78 | 0.01 | 1.865 | 9.38 | 10.13 | 4.0 | 95.9 | 0.2 | -2.82 | 0.85 | 0.89 | 2.34 | 3.1 | 0.004 | 0.68 | 0.0 | 0.04 | 17.92 | 0.01 | 1.852 | 11.22 | 0.38 | 3.7 | 96.2 | 0.1 | 0.45 | 0.76 | 0.84 | 0.89 | 2.23 | 111109 | 9312 | 78 | 1687 | 225 | 2 | 0 | logfile |
✔ | 4UFT | 2867 | 2023-04-23 | 2015-03-19 | 4.3 | 4.24 | — | 4.2 | 0.005 | 0.96 | 0.0 | 0.05 | 11.26 | 0.00 | 1.169 | 8.53 | 0.31 | 13.2 | 83.9 | 3.0 | -4.63 | 0.54 | 0.70 | — | 4.2 | 0.004 | 0.78 | 0.0 | 0.04 | 13.25 | 0.01 | 2.091 | 11.84 | 0.05 | 8.2 | 90.7 | 1.1 | -2.58 | 1.93 | 0.59 | 0.79 | — | 119847 | 14703 | 78 | 234 | 0 | 0 | 0 | logfile |
✘ | 7F4V | 31455 | 2023-04-24 | 2021-06-21 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 67641 | 6336 | 78 | 0 | 453 | 402 | 0 | logfile |
✘ | 7S3D | 24821 | 2023-04-28 | 2021-09-05 | 2.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75150 | 7074 | 78 | 0 | 417 | 333 | 0 | logfile |
✔ | 7VRJ | 32100 | 2023-04-27 | 2021-10-23 | 2.81 | 2.48 | — | 2.7 | 0.019 | 1.88 | 0.0 | 0.06 | 18.01 | 0.02 | 2.064 | 9.41 | 1.43 | 2.9 | 97.1 | 0.0 | 1.42 | 0.68 | 0.84 | 3.65 | 2.7 | 0.004 | 0.81 | 0.0 | 0.04 | 18.62 | 0.00 | 1.904 | 7.35 | 2.81 | 2.7 | 97.3 | 0.0 | 1.18 | 0.35 | 0.69 | 0.87 | 3.08 | 26309 | 2604 | 77 | 0 | 114 | 48 | 0 | logfile |
✘ | 6YP7 | 10865 | 2023-04-26 | 2020-04-15 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71784 | 7002 | 77 | 0 | 325 | 0 | 0 | logfile |
✔ | 7E80 | 31006 | 2023-04-22 | 2021-02-28 | 3.67 | 4.02 | — | 3.9 | 0.003 | 0.50 | 4.0 | 0.04 | 10.46 | 0.00 | 2.066 | 8.31 | 1.97 | 4.4 | 95.6 | 0.0 | 0.97 | 0.74 | 0.84 | 1.76 | 3.9 | 0.002 | 0.63 | 0.0 | 0.04 | 13.63 | 0.00 | 2.096 | 10.56 | 0.23 | 3.9 | 96.1 | 0.0 | 0.89 | 0.46 | 0.73 | 0.84 | 1.58 | 114468 | 15296 | 77 | 0 | 75 | 0 | 0 | logfile |
✔ | 7R4X | 14317 | 2023-04-28 | 2022-02-09 | 2.15 | 1.94 | — | 2.1 | 0.012 | 1.13 | 0.0 | 0.06 | 16.98 | 0.04 | 1.443 | 4.90 | 4.12 | 3.8 | 96.2 | 0.1 | -0.66 | 0.70 | 0.73 | 4.07 | 2.0 | 0.005 | 1.06 | 0.0 | 0.04 | 17.40 | 0.01 | 1.810 | 12.10 | 2.57 | 3.6 | 96.4 | 0.0 | 0.26 | 0.92 | 0.77 | 0.85 | 4.42 | 77937 | 4792 | 77 | 1646 | 174 | 4117 | 0 | logfile |