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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8BD3 | 15973 | 2024-03-13 | 2022-10-18 | 2.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 117990 | 10804 | 166 | 0 | 722 | 224 | 0 | logfile |
✔ | 7VEA | 31944 | 2024-03-11 | 2021-09-08 | 3.7 | 3.55 | — | 3.5 | 0.009 | 1.13 | 0.0 | 0.04 | 13.27 | 0.00 | 2.098 | 6.48 | 0.58 | 1.5 | 98.4 | 0.0 | 2.51 | 0.65 | 0.78 | 1.44 | 3.6 | 0.004 | 0.75 | 0.0 | 0.04 | 16.07 | 0.00 | 2.058 | 14.65 | 3.66 | 2.1 | 97.9 | 0.0 | 2.40 | 1.40 | 0.69 | 0.77 | 1.12 | 111542 | 15594 | 165 | 0 | 84 | 0 | 0 | logfile |
✘ | 7PiW | 13455 | 2024-03-27 | 2021-08-23 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 151508 | 14859 | 161 | 0 | 703 | 0 | 0 | logfile |
✔ | 7SC7 | 25028 | 2024-03-10 | 2021-09-27 | 2.8 | 3.66 | — | 3.3 | 0.007 | 1.08 | 1.0 | 0.06 | 14.60 | 0.01 | 2.240 | 6.50 | 1.49 | 2.4 | 97.6 | 0.0 | -1.25 | 0.73 | 0.87 | 1.85 | 3.2 | 0.004 | 0.91 | 0.0 | 0.05 | 16.57 | 0.00 | 2.044 | 21.20 | 3.09 | 2.9 | 97.1 | 0.0 | 1.01 | 1.24 | 0.72 | 0.88 | 1.68 | 107930 | 13756 | 156 | 0 | 72 | 0 | 0 | logfile |
✔ | 5LEG | 4042 | 2024-03-24 | 2016-06-29 | 3.6 | 3.32 | — | 3.8 | 0.012 | 1.21 | 0.0 | 0.04 | 18.49 | 0.00 | 2.383 | 44.75 | 0.00 | 8.2 | 91.8 | 0.0 | -5.72 | 0.71 | 0.75 | 3.30 | 3.3 | 0.005 | 0.77 | 0.0 | 0.04 | 17.39 | 0.00 | 2.140 | 11.58 | 3.68 | 5.6 | 94.4 | 0.0 | -1.24 | 0.92 | 0.72 | 0.84 | 2.14 | 41355 | 5040 | 155 | 0 | 75 | 0 | 0 | logfile |
✔ | 6WL7 | 21816 | 2024-03-22 | 2020-04-18 | 3.8 | 4.18 | — | 3.9 | 0.006 | 0.58 | 0.0 | 0.04 | 14.93 | 0.00 | 2.204 | 8.50 | 0.00 | 1.2 | 98.8 | 0.0 | 3.28 | 0.79 | 0.87 | 2.36 | 3.9 | 0.005 | 0.83 | 0.0 | 0.04 | 17.52 | 0.00 | 2.175 | 13.92 | 6.51 | 0.0 | 100.0 | 0.0 | 5.90 | 1.40 | 0.79 | 0.87 | 1.96 | 34350 | 4350 | 150 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TGH | 25882 | 2024-03-02 | 2022-01-07 | 2.6 | 2.85 | — | 2.7 | 0.005 | 0.59 | 0.0 | 0.69 | 16.31 | 0.00 | 2.115 | 6.27 | 0.01 | 3.2 | 96.8 | 0.0 | 0.89 | 0.79 | 0.86 | 3.66 | 2.7 | 0.006 | 1.08 | 0.0 | 0.21 | 17.04 | 0.00 | 1.468 | 6.56 | 1.21 | 3.0 | 97.0 | 0.0 | 1.36 | 0.89 | 0.80 | 0.88 | 3.35 | 153366 | 18084 | 146 | 0 | 313 | 0 | 0 | logfile |
✔ | 7LQG | 23485 | 2024-03-15 | 2021-02-13 | 3.4 | 3.13 | — | 3.3 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 1.842 | 31.02 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.61 | 0.81 | 5.57 | 3.2 | 0.110 | 4.32 | 163.0 | 0.30 | 24.12 | 0.02 | 1.769 | 115.03 | 20.14 | 35.2 | 64.8 | 0.0 | -8.00 | 1.14 | 0.67 | 0.87 | 3.69 | 12096 | 1152 | 144 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PQD | 13590 | 2024-03-25 | 2021-09-17 | 2.9 | 2.29 | — | 2.7 | 0.016 | 4.90 | 0.0 | 0.10 | 18.66 | 0.01 | 2.065 | 1.90 | 0.36 | 2.2 | 97.7 | 0.1 | -0.58 | 0.65 | 0.76 | 4.80 | 2.7 | 0.005 | 2.37 | 0.0 | 0.04 | 19.61 | 0.00 | 1.851 | 10.19 | 2.31 | 2.1 | 97.9 | 0.0 | 2.21 | 0.52 | 0.69 | 0.84 | 3.80 | 45952 | 4698 | 144 | 0 | 142 | 144 | 0 | logfile |
✔ | 7LQH | 23486 | 2024-03-15 | 2021-02-13 | 3.4 | 3.12 | — | 3.4 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 2.098 | 31.15 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.59 | 0.80 | 5.83 | 3.2 | 0.111 | 4.15 | 178.0 | 0.30 | 24.80 | 0.02 | 1.776 | 108.91 | 21.76 | 35.4 | 64.6 | 0.0 | -7.62 | 3.47 | 0.65 | 0.87 | 3.27 | 12096 | 1152 | 144 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VD5 | 31905 | 2024-03-20 | 2021-09-06 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 100884 | 9450 | 143 | 0 | 670 | 52 | 0 | logfile |
✔ | 8CUE | 26999 | 2024-03-23 | 2022-05-17 | 3.2 | 3.57 | 3.25 | 3.7 | 0.010 | 1.82 | 0.0 | 0.04 | 24.54 | 0.00 | 2.541 | 2.88 | 0.00 | 1.5 | 98.5 | 0.0 | 0.78 | 0.73 | 0.83 | 2.63 | 3.6 | 0.003 | 0.48 | 0.0 | 0.03 | 18.37 | 0.00 | 2.268 | 6.49 | 1.37 | 0.3 | 99.7 | 0.0 | 2.21 | 0.63 | 0.69 | 0.84 | 2.43 | 37240 | 4900 | 140 | 0 | 70 | 0 | 0 | logfile |
✘ | 5XNL | 6741 | 2024-03-20 | 2017-05-23 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98986 | 9364 | 136 | 0 | 490 | 1076 | 0 | logfile |
✔ | 8CW4 | 27023 | 2024-03-24 | 2022-05-18 | 3.0 | 3.18 | 3.05 | 3.1 | 0.007 | 0.80 | 0.0 | 0.04 | 28.78 | 0.03 | 2.109 | 6.32 | 0.00 | 2.9 | 97.1 | 0.0 | 2.21 | 0.75 | 0.87 | 4.87 | 3.1 | 0.002 | 0.47 | 0.0 | 0.04 | 17.09 | 0.00 | 2.183 | 3.20 | 0.70 | 1.0 | 99.0 | 0.0 | 1.99 | 1.15 | 0.74 | 0.88 | 3.22 | 39270 | 4900 | 135 | 0 | 70 | 0 | 0 | logfile |
✘ | 7Pi0 | 13429 | 2024-03-17 | 2021-08-19 | 2.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 77465 | 7442 | 133 | 0 | 354 | 1724 | 0 | logfile |
✔ | 8Bi4 | 16076 | 2024-03-22 | 2022-11-01 | 4.3 | 4.52 | 4.39 | 4.5 | 0.004 | 0.97 | 0.0 | 0.05 | 11.50 | 0.01 | 0.452 | 10.80 | 0.14 | 4.0 | 95.6 | 0.3 | -0.49 | 0.64 | 0.81 | — | 4.5 | 0.004 | 0.75 | 0.0 | 0.05 | 13.48 | 0.00 | 2.050 | 8.51 | 0.04 | 4.9 | 95.1 | 0.0 | -0.55 | 1.64 | 0.65 | 0.83 | — | 145200 | 19404 | 132 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VY2 | 32192 | 2024-03-25 | 2021-11-13 | 2.75 | 2.61 | — | 2.7 | 0.019 | 1.91 | 0.0 | 0.06 | 21.91 | 0.02 | 1.943 | 15.57 | 3.39 | 2.9 | 97.1 | 0.0 | 1.62 | 0.71 | 0.79 | 3.16 | 2.7 | 0.004 | 0.75 | 0.0 | 0.04 | 18.43 | 0.00 | 1.891 | 14.63 | 2.99 | 2.8 | 97.2 | 0.0 | 1.99 | 0.46 | 0.72 | 0.83 | 2.84 | 46292 | 4534 | 131 | 0 | 201 | 0 | 0 | logfile |
✔ | 7MUD | 24005 | 2024-03-17 | 2021-05-14 | 2.8 | 2.89 | — | 2.9 | 0.003 | 0.75 | 0.0 | 0.05 | 14.02 | 0.01 | 2.294 | 3.05 | 0.07 | 4.7 | 95.3 | 0.0 | -0.51 | 0.79 | 0.85 | 2.78 | 2.8 | 0.002 | 0.56 | 0.0 | 0.04 | 16.63 | 0.00 | 2.185 | 5.42 | 1.93 | 4.7 | 95.3 | 0.0 | 0.68 | 1.16 | 0.81 | 0.88 | 2.59 | 134758 | 17147 | 130 | 0 | 117 | 0 | 0 | logfile |
✘ | 6JLU | 9839 | 2024-03-21 | 2019-03-06 | 3.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 102777 | 9704 | 128 | 0 | 820 | 1 | 0 | logfile |
✘ | 7VoR | 32058 | 2024-03-24 | 2021-10-14 | 2.74 | 2.87 | — | 2.8 | 0.007 | 0.96 | 0.0 | 0.04 | 15.58 | 0.00 | 2.138 | 8.41 | 0.37 | 1.8 | 98.2 | 0.0 | 2.88 | 0.76 | 0.85 | 3.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44980 | 4614 | 128 | 0 | 148 | 0 | 0 | logfile |