Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VoR	32058	2022-07-07	2021-10-14	2.74	2.87	—	2.8	0.007	0.94	0.0	0.04	14.83	0.00	2.138	8.49	0.37	1.8	98.2	0.0	2.88	0.76	0.85	3.78	2.8	0.003	0.63	0.0	0.04	16.82	0.00	2.174	9.83	1.42	1.3	98.7	0.0	2.79	0.46	0.76	0.86	3.45	44980	4614	128	0	148	0	0	logfile
✘	6KAC	9955	2022-07-05	2019-06-21	2.7	2.84	—	2.8	0.011	1.46	0.0	0.06	14.99	0.02	1.198	8.43	0.64	4.9	95.0	0.1	-4.64	0.72	0.84	4.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	77947	7858	126	0	318	595	0	logfile
✘	5WDT	8813	2022-07-11	2017-07-06	3.0	3.20	3.19	3.2	0.007	1.11	2.0	0.10	17.56	0.01	1.180	4.78	3.29	9.7	88.1	2.3	-4.08	0.77	0.80	2.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	155275	6324	125	4802	1910	920	0	logfile
✘	7TXJ	26159	2022-07-06	2022-02-09	3.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	101029	10912	124	744	0	0	0	logfile
✔	7VA9	31835	2022-07-07	2021-08-27	3.08	2.58	—	2.9	0.020	2.12	0.0	0.05	18.34	0.05	1.992	15.70	2.83	2.3	97.7	0.0	1.34	0.60	0.79	3.23	2.8	0.005	0.84	0.0	0.04	17.49	0.01	1.761	8.81	0.38	1.8	98.2	0.0	2.18	0.52	0.63	0.81	3.25	42176	4350	124	0	131	0	0	logfile
✘	6J40	9777	2022-07-06	2019-01-07	3.8	4.30	—	3.8	0.011	1.29	4.0	0.07	15.80	0.01	1.167	17.75	0.33	4.5	95.5	0.0	-5.08	0.80	0.72	1.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	96390	8392	120	0	1656	0	0	logfile
✔	7A4F	11631	2022-07-07	2020-08-19	3.5	3.84	3.48	3.7	0.002	0.45	0.0	0.04	11.66	0.00	2.212	6.45	3.31	2.4	97.6	0.0	1.60	0.78	0.84	1.24	3.7	0.003	0.61	0.0	0.04	15.23	0.00	2.094	10.80	0.35	2.3	97.7	0.0	2.00	2.16	0.79	0.86	0.79	141432	18540	120	0	0	0	0	logfile
✔	6WH3	21667	2022-07-12	2020-04-07	2.96	3.01	—	3.0	0.011	1.09	60.0	0.08	9.53	0.01	2.204	31.73	0.68	3.9	96.1	0.0	-1.75	0.74	0.87	5.56	3.0	0.004	0.64	0.0	0.05	16.07	0.00	2.097	15.42	3.49	5.4	94.6	0.0	-1.05	0.61	0.71	0.88	4.59	157740	20040	120	0	60	0	0	logfile
✔	6TGY	10501	2022-07-06	2019-11-18	3.5	3.59	3.49	3.5	0.007	1.10	0.0	0.05	10.46	0.01	2.359	1.88	0.00	16.6	83.4	0.0	-5.42	0.69	0.73	3.89	3.5	0.004	0.65	0.0	0.04	14.75	0.01	2.113	6.63	0.57	13.6	86.4	0.0	-1.15	0.75	0.76	0.84	2.87	96960	12480	120	0	0	0	0	logfile
✘	7QSM	14134	2022-07-04	2022-01-13	2.3	2.31	—	2.3	0.007	0.92	0.0	0.85	15.59	0.00	1.178	2.95	0.58	2.3	97.6	0.0	0.75	0.76	0.90	6.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	71639	8262	118	0	62	2774	0	logfile
✘	5WE4	8814	2022-07-11	2017-07-07	3.1	3.04	3.02	3.0	0.007	1.13	3.0	0.10	17.39	0.01	1.181	3.79	3.52	9.8	87.9	2.3	-4.03	0.78	0.81	2.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	155067	6324	117	4802	1620	996	0	logfile
✔	7K00	22586	2022-07-09	2020-09-02	1.98	1.72	—	1.9	0.006	0.95	3.0	0.05	15.15	0.01	1.194	7.51	6.32	3.9	96.0	0.1	-1.76	0.69	0.83	5.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	149338	5585	117	4555	331	7248	0	logfile
✔	6X62	22068	2022-07-03	2020-05-27	3.5	3.69	—	3.7	0.014	1.87	45.0	0.09	15.63	0.01	2.185	7.00	4.90	8.5	91.5	0.0	-3.87	0.65	0.64	0.52	3.6	0.006	0.91	1.0	0.05	16.35	0.01	2.036	20.25	0.90	6.8	93.2	0.0	-1.80	1.27	0.74	0.82	1.21	109070	15548	117	0	0	0	0	logfile
✔	6X66	22071	2022-07-03	2020-05-27	4.2	6.75	—	8.4	0.016	1.73	27.0	0.08	14.04	0.01	2.162	21.83	0.38	12.3	87.7	0.0	-3.77	0.72	0.45	—	4.2	0.005	0.80	1.0	0.05	12.69	0.00	1.857	24.55	0.00	8.0	92.0	0.0	-2.10	2.52	0.76	0.69	—	109070	15548	117	0	0	0	0	logfile
✘	7QSK	14132	2022-07-04	2022-01-13	2.84	2.93	2.90	2.8	0.008	0.90	0.0	0.84	14.92	0.00	1.178	3.44	0.15	3.1	96.9	0.1	0.26	0.77	0.87	4.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	69986	8291	116	0	59	1060	0	logfile
✘	7ARD	11880	2022-07-04	2020-10-23	3.11	3.05	—	3.0	0.005	0.90	0.0	0.05	13.95	0.01	1.179	12.30	0.04	2.1	97.9	0.0	0.94	0.78	0.86	3.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	70559	8515	116	0	264	782	0	logfile
✘	7QSN	14139	2022-07-04	2022-01-13	2.81	2.74	2.82	2.7	0.008	0.92	0.0	0.85	15.07	0.00	1.179	3.93	0.01	3.3	96.7	0.0	-0.45	0.77	0.87	4.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	69319	8201	116	0	59	1096	0	logfile
✘	7P7Q	13241	2022-07-10	2021-07-20	2.4	2.95	2.36	2.3	0.005	1.18	0.0	0.06	15.29	0.00	1.201	4.78	0.76	2.6	97.3	0.0	0.28	0.89	0.91	4.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	151202	6096	115	4625	360	3601	0	logfile
✘	5WFS	8829	2022-07-11	2017-07-12	3.0	3.09	3.13	3.0	0.007	1.14	2.0	0.10	18.01	0.01	1.175	4.26	3.10	9.3	88.2	2.4	-4.11	0.73	0.77	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	155100	6324	114	4802	1479	1175	0	logfile
✘	6KiF	9994	2022-07-07	2019-07-18	3.3	3.42	—	3.3	0.010	1.30	0.0	0.06	19.33	0.01	1.357	9.08	0.03	2.9	97.1	0.0	-2.65	0.72	0.74	2.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	144312	13395	114	0	843	54	0	logfile

• ← previous
• Page 4 of 392
• next →