Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7o71	12742	2022-12-19	2021-04-12	2.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67428	8041	102	0	49	1616	0	logfile
✔	7LQi	23487	2022-12-12	2021-02-13	3.5	3.92	—	3.9	0.016	1.40	0.0	0.03	20.42	0.00	2.242	22.86	5.00	0.0	100.0	0.0	-3.42	0.62	0.78	4.80	3.9	0.051	2.84	5.0	0.14	22.95	0.01	1.918	120.83	3.83	46.2	53.8	0.0	-7.03	1.54	0.65	0.83	2.47	8400	800	100	0	0	0	0	logfile
✘	3J06	5185	2022-12-19	2011-04-26	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64200	7750	100	150	0	0	0	logfile
✔	6TUP	10593	2022-12-14	2020-01-08	3.2	3.52	—	3.3	0.011	1.02	0.0	0.05	21.23	0.00	0.032	54.60	0.00	0.0	100.0	0.0	-7.04	0.49	0.47	1.19	3.4	0.039	2.56	0.0	0.24	27.07	0.01	1.098	116.88	1.25	3.2	96.8	0.0	-2.76	8.49	0.54	0.59	-0.09	22400	2300	100	300	0	0	0	logfile
✔	7VB9	31875	2022-12-19	2021-08-30	3.45	3.03	—	3.3	0.019	1.97	0.0	0.04	17.13	0.05	2.077	14.25	3.01	2.8	97.2	0.0	2.33	0.62	0.77	2.94	3.3	0.005	0.78	0.0	0.04	17.27	0.00	1.682	11.45	0.32	2.5	97.5	0.0	1.95	1.79	0.66	0.82	2.74	36474	3807	100	0	107	0	0	logfile
✘	2XEA	1730	2022-12-19	2010-05-12	4.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	63950	7700	100	150	0	0	0	logfile
✘	6TRC	10558	2022-12-19	2019-12-18	2.98	3.06	—	3.1	0.010	1.16	0.0	0.07	19.32	0.02	1.220	9.53	1.42	7.9	92.1	0.0	-3.92	0.71	0.79	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75591	6849	99	0	402	651	0	logfile
✔	7Q2Q	13780	2022-12-12	2021-10-26	4.3	3.37	—	3.6	0.010	1.40	0.0	0.08	11.79	0.01	1.166	18.08	0.00	8.5	90.7	0.8	-4.23	0.58	0.71	—	3.3	0.003	0.69	0.0	0.04	14.65	0.00	2.013	12.21	0.27	4.6	95.4	0.0	-1.38	1.52	0.60	0.75	—	62377	7497	98	147	0	0	0	logfile
✔	7Q2S	13782	2022-12-12	2021-10-26	3.7	3.23	—	3.3	0.010	1.40	0.0	0.08	11.79	0.01	1.217	18.46	0.00	8.6	90.7	0.7	-4.24	0.45	0.63	1.80	3.2	0.004	0.81	0.0	0.04	17.78	0.00	2.075	17.99	0.73	5.7	94.3	0.0	-2.26	1.12	0.52	0.68	1.93	62377	7497	98	147	0	0	0	logfile
✔	6J3Z	9776	2022-12-15	2019-01-07	3.6	3.78	—	3.6	0.019	1.77	4.0	0.15	18.06	0.01	1.392	13.74	0.28	4.3	95.7	0.0	-5.08	0.80	0.81	3.43	3.6	0.003	0.71	0.0	0.04	17.38	0.00	1.445	14.34	0.41	3.5	96.5	0.0	-0.06	0.76	0.81	0.82	2.50	74619	6984	97	0	978	0	0	logfile
✘	7FiX	31605	2022-12-19	2021-08-01	1.97	2.54	1.91	2.2	0.021	1.45	0.0	0.05	17.92	0.02	1.200	5.87	0.00	2.1	97.9	0.0	1.60	0.80	0.89	5.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	73929	7137	96	0	444	348	0	logfile
✔	6YJ4	10815	2022-12-13	2020-04-02	2.7	2.35	2.73	2.6	0.011	1.10	0.0	0.65	14.70	0.01	2.031	3.80	0.03	4.1	95.8	0.0	-2.17	0.58	0.79	4.22	2.5	0.005	1.03	0.0	0.18	16.77	0.00	1.390	7.99	1.56	3.3	96.7	0.0	0.77	0.57	0.63	0.84	3.75	66311	8126	94	0	50	275	0	logfile
✘	6KAD	9956	2022-12-19	2019-06-21	3.4	3.59	—	3.5	0.011	1.60	0.0	0.07	16.10	0.02	1.201	7.96	0.67	7.4	92.6	0.0	-5.09	0.77	0.84	3.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	105342	9734	94	0	560	0	0	logfile
✔	7JJJ	22354	2022-12-11	2020-07-26	4.5	4.63	4.47	4.5	0.020	1.77	0.0	0.13	9.94	0.01	2.377	1.07	0.07	2.0	98.0	0.0	0.68	0.79	0.80	—	4.5	0.005	0.71	0.0	0.05	12.06	0.00	2.170	12.50	0.00	4.7	95.3	0.0	-0.24	1.44	0.80	0.83	—	54614	6674	92	0	182	0	0	logfile
✔	6ET5	3951	2022-12-16	2017-10-25	2.87	4.09	3.11	3.5	0.025	2.86	202.0	0.21	21.56	0.03	1.592	33.57	8.13	12.2	83.7	4.1	-5.05	0.80	0.85	3.34	3.5	0.004	1.01	0.0	0.05	18.78	0.00	2.041	14.82	1.67	9.2	90.5	0.3	-0.25	1.31	0.79	0.85	3.02	31994	3492	92	0	75	0	0	logfile
✔	6J3Y	9775	2022-12-14	2019-01-07	3.3	3.49	—	3.4	0.019	1.72	4.0	0.14	17.45	0.01	1.372	10.17	0.32	4.1	95.9	0.0	-5.09	0.77	0.84	3.85	3.4	0.003	0.66	0.0	0.04	16.93	0.00	1.968	12.45	0.39	3.3	96.7	0.0	0.13	0.65	0.79	0.87	2.92	70136	6984	90	0	428	0	0	logfile
✘	7oFQ	12875	2022-12-19	2021-05-05	3.08	2.88	—	3.0	0.010	1.80	204.0	0.13	13.81	0.01	1.189	3.49	1.96	5.0	95.0	0.0	-1.69	0.71	0.88	2.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	80691	9493	90	0	849	0	0	logfile
✘	5XNM	6742	2022-12-19	2017-05-23	3.2	3.28	—	3.3	0.011	1.67	0.0	0.08	16.06	0.02	1.205	9.94	0.03	2.3	97.7	0.0	-2.60	0.71	0.82	3.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	92842	8712	90	0	486	0	0	logfile
✘	6JEo	9807	2022-12-19	2019-02-06	3.3	3.44	—	3.4	0.009	1.14	0.0	0.06	18.11	0.02	1.212	7.53	0.24	4.8	95.2	0.0	-5.26	0.73	0.81	4.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	94576	8774	88	0	504	0	0	logfile
✔	7V7i	31772	2022-12-22	2021-08-21	3.3	4.09	—	3.8	0.005	0.59	0.0	0.05	13.45	0.00	2.128	8.36	0.00	5.4	94.5	0.2	-0.23	0.86	0.85	2.37	3.8	0.004	0.57	0.0	0.04	14.85	0.00	1.991	7.32	0.18	5.6	94.3	0.1	-0.25	0.31	0.87	0.87	1.93	51072	6228	84	0	174	0	0	logfile

• ← previous
• Page 4 of 443
• next →