Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NJP	12402	2023-04-27	2021-02-17	2.84	2.89	—	2.7	0.003	0.50	0.0	0.04	14.36	0.00	2.035	6.55	0.00	2.3	97.7	0.0	1.92	0.86	0.86	3.44	2.7	0.003	0.51	0.0	0.04	15.56	0.00	1.765	7.05	0.34	2.5	97.4	0.0	1.72	0.91	0.86	0.88	3.33	74554	4929	31	0	11	16	37305	logfile
✔	7NJN	12392	2023-04-27	2021-02-17	2.64	2.61	—	2.0	0.004	0.52	0.0	0.04	14.52	0.00	1.931	6.46	0.00	2.3	97.6	0.1	1.48	0.85	0.87	3.94	2.0	0.004	0.51	0.0	0.04	15.78	0.00	1.716	6.68	0.55	2.4	97.6	0.1	1.57	0.89	0.86	0.89	3.84	74548	4927	31	0	11	16	37299	logfile
✔	6VFX	21194	2023-04-27	2020-01-06	2.9	3.10	—	3.1	0.003	0.60	0.0	0.04	10.55	0.00	2.112	2.11	0.10	3.6	96.4	0.0	-1.34	0.59	0.59	2.34	3.1	0.003	0.62	0.0	0.04	16.78	0.00	1.842	8.74	2.09	3.6	96.4	0.0	-0.09	1.58	0.70	0.80	2.40	73348	4682	27	0	18	0	36896	logfile
✔	6MDN	9101	2023-04-27	2018-09-04	4.4	8.07	—	4.0	0.016	1.67	1.0	0.12	11.66	0.01	1.938	6.70	0.38	2.8	96.9	0.2	-3.67	0.87	0.70	—	3.9	0.003	0.63	0.0	0.06	11.77	0.00	1.875	15.75	0.03	5.7	94.3	0.0	-1.02	0.83	0.93	0.84	—	72910	4632	17	0	11	0	36496	logfile
✘	7ZQ9	14867	2023-04-21	2022-04-29	2.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	92130	4713	47	0	397	88	35670	logfile
✔	6B6H	7059	2023-04-27	2017-10-02	3.9	4.15	—	3.7	0.008	0.96	0.0	0.05	15.91	0.01	1.944	6.23	0.03	8.9	91.0	0.2	-4.47	0.71	0.48	1.58	3.8	0.004	0.67	0.0	0.04	17.34	0.00	1.132	13.86	0.28	8.5	91.4	0.0	-1.79	1.53	0.84	0.64	1.47	72070	4188	15	178	6	0	35400	logfile
✔	7L06	23095	2023-04-27	2020-12-11	3.3	3.96	—	3.6	0.014	1.65	2.0	0.15	12.73	0.02	1.189	3.42	0.87	3.8	96.2	0.0	-0.59	0.81	0.73	1.86	3.6	0.003	0.61	0.0	0.04	14.28	0.00	1.439	7.83	0.12	4.6	95.4	0.0	-0.20	0.91	0.84	0.80	1.99	71940	4636	28	0	77	0	35068	logfile
✔	7NYX	12657	2023-04-26	2021-03-23	4.6	7.95	4.57	3.3	0.003	0.61	0.0	0.04	17.28	0.00	1.844	11.21	0.00	3.4	96.6	0.0	1.74	0.88	0.79	—	3.2	0.004	0.59	0.0	0.04	17.03	0.00	0.850	17.45	0.00	5.3	94.7	0.0	0.67	0.56	0.90	0.83	—	70784	4186	18	104	6	0	34688	logfile
✔	7CPX	30434	2023-04-26	2020-08-08	2.91	3.01	2.94	3.0	0.004	0.66	0.0	0.04	11.47	0.00	1.981	9.55	2.99	5.1	94.9	0.1	-0.56	0.54	0.56	2.41	3.0	0.004	0.68	0.0	0.05	15.69	0.00	1.907	17.52	2.44	5.9	94.1	0.1	-1.16	1.36	0.70	0.75	2.87	70068	4524	4	0	2	0	34668	logfile
✔	6PB4	20286	2023-04-26	2019-06-13	4.35	5.03	—	4.3	0.010	1.16	0.0	0.06	16.29	0.01	1.840	11.04	0.06	11.5	88.1	0.4	-4.77	0.69	0.43	—	4.2	0.003	0.68	0.0	0.04	16.64	0.00	1.509	17.65	0.00	8.8	91.1	0.2	-2.71	1.23	0.83	0.73	—	69922	4091	14	158	6	0	34409	logfile
✔	7WD9	32435	2023-04-26	2021-12-21	3.7	4.02	—	3.8	0.003	0.46	0.0	0.04	7.35	0.00	1.967	2.78	0.00	4.2	95.6	0.1	-1.79	0.57	0.42	0.74	3.8	0.003	0.64	0.0	0.04	13.62	0.00	1.877	11.74	0.23	5.5	94.4	0.1	-0.85	1.33	0.75	0.68	1.07	69720	4533	9	0	0	0	34404	logfile
✔	6PB6	20288	2023-04-26	2019-06-13	4.29	5.03	—	4.3	0.010	1.13	0.0	0.05	16.04	0.01	1.968	10.82	0.11	10.6	89.1	0.3	-4.79	0.68	0.43	—	4.3	0.003	0.68	0.0	0.04	16.93	0.00	1.881	17.30	0.00	8.7	91.3	0.1	-2.58	0.93	0.83	0.74	—	69824	4091	13	156	5	0	34388	logfile
✔	7CWT	30487	2023-04-26	2020-08-31	3.7	3.88	—	3.7	0.009	1.18	16.0	0.11	11.08	0.01	1.257	28.32	1.43	6.9	92.5	0.6	-2.94	0.58	0.48	1.06	3.7	0.005	0.73	0.0	0.04	14.05	0.00	1.450	14.14	0.28	10.5	89.2	0.3	-2.51	1.90	0.65	0.64	1.40	70024	4584	18	0	14	0	34386	logfile
✔	6XRE	22294	2023-04-25	2020-07-12	4.6	7.52	—	4.5	0.011	1.16	1.0	0.07	10.73	0.01	0.771	5.15	0.24	7.9	91.5	0.6	-3.72	0.62	0.29	—	4.5	0.004	0.75	0.0	0.04	11.99	0.01	1.838	19.46	0.00	14.8	85.2	0.0	-2.98	0.93	0.85	0.65	—	68542	4289	18	0	9	0	34248	logfile
✔	7PGS	13394	2023-04-24	2021-08-15	3.4	3.61	3.34	3.4	0.002	0.40	0.0	0.03	10.77	0.00	1.972	3.57	0.66	1.2	98.8	0.0	-0.33	0.80	0.79	2.03	3.4	0.003	0.54	0.0	0.03	13.21	0.00	1.871	6.13	0.08	3.3	96.7	0.0	1.64	0.74	0.82	0.81	1.41	67202	4210	2	0	1	0	33807	logfile
✔	7KQE	22997	2023-04-25	2020-11-15	2.88	3.80	2.90	3.4	0.012	1.80	8.0	0.10	13.99	0.01	2.478	0.25	1.08	6.3	93.6	0.1	-1.09	0.73	0.37	2.42	2.9	0.003	0.59	0.0	0.04	14.25	0.00	2.025	4.55	0.77	4.4	95.6	0.0	-0.11	0.67	0.87	0.83	2.31	68370	4467	9	0	0	0	33744	logfile
✔	8AP7	15560	2023-04-28	2022-08-09	2.7	2.82	2.67	2.8	0.015	0.87	0.0	0.05	16.38	0.01	1.432	1.69	0.44	1.6	98.4	0.0	2.70	0.65	0.87	5.11	2.8	0.004	0.52	0.0	0.04	16.25	0.00	1.823	7.65	0.74	2.0	98.0	0.0	2.56	1.06	0.66	0.89	4.58	71476	4076	58	0	44	24	33618	logfile
✘	5WC3	8795	2023-04-23	2017-06-29	3.5	3.53	—	3.5	0.015	1.18	0.0	0.06	9.37	0.01	1.925	12.86	0.00	8.0	90.5	1.5	-5.20	0.79	0.76	2.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65880	4170	30	0	0	0	33390	logfile
✔	6HZ6	0312	2023-04-24	2018-10-22	4.3	4.35	4.18	4.3	0.010	1.00	0.0	0.05	14.61	0.01	1.941	3.48	0.59	2.8	97.2	0.0	-0.71	0.81	0.77	—	4.3	0.003	0.59	0.0	0.04	14.63	0.00	1.839	13.61	0.03	4.2	95.8	0.0	-0.20	1.90	0.82	0.78	—	67582	4120	26	6	12	0	33368	logfile
✔	6HZ8	0314	2023-04-24	2018-10-22	4.3	4.47	4.31	4.4	0.009	0.99	0.0	0.05	14.59	0.01	1.943	3.29	0.59	2.7	97.3	0.0	-0.48	0.77	0.73	—	4.4	0.005	0.67	0.0	0.04	14.60	0.00	1.739	14.95	0.00	5.3	94.7	0.0	-0.46	1.89	0.79	0.76	—	67582	4120	26	6	12	0	33368	logfile

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