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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7oHP | 12904 | 2024-03-21 | 2021-05-11 | 3.9 | 5.25 | 4.02 | 3.0 | 0.005 | 0.54 | 0.0 | 0.03 | 22.32 | 0.00 | 1.733 | 6.18 | 1.01 | 4.3 | 95.5 | 0.2 | 1.17 | 0.80 | 0.64 | 0.37 | 3.1 | 0.005 | 0.68 | 0.0 | 0.04 | 23.08 | 0.00 | 1.793 | 24.53 | 2.62 | 8.6 | 91.4 | 0.0 | -1.16 | 1.73 | 0.83 | 0.74 | 0.43 | 143939 | 5290 | 35 | 1781 | 1 | 0 | 63394 | logfile |
✔ | 8J4U | 35978 | 2024-03-15 | 2023-04-20 | 2.97 | 3.19 | 3.06 | 3.2 | 0.006 | 0.72 | 3.0 | 0.05 | 15.67 | 0.01 | 2.006 | 3.89 | 0.03 | 7.4 | 92.6 | 0.0 | -4.94 | 0.76 | 0.83 | 3.45 | 3.2 | 0.003 | 0.58 | 3.0 | 0.05 | 16.97 | 0.00 | 1.929 | 3.10 | 1.02 | 5.5 | 94.5 | 0.0 | -2.08 | 0.65 | 0.76 | 0.85 | 2.98 | 128773 | 8154 | 35 | 0 | 18 | 0 | 63203 | logfile |
✔ | 7U05 | 26254 | 2024-03-16 | 2022-02-17 | 3.7 | 3.56 | — | 3.5 | 0.004 | 0.81 | 0.0 | 0.05 | 14.14 | 0.01 | 2.019 | 4.02 | 0.07 | 9.7 | 90.2 | 0.1 | -1.55 | 0.51 | 0.72 | 2.03 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 16.47 | 0.00 | 1.864 | 10.58 | 3.46 | 9.8 | 90.0 | 0.1 | -1.06 | 0.53 | 0.53 | 0.74 | 2.00 | 127996 | 7632 | 32 | 0 | 722 | 0 | 62402 | logfile |
✘ | 8APK | 15573 | 2024-03-15 | 2022-08-09 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126493 | 7873 | 61 | 0 | 36 | 0 | 62392 | logfile |
✘ | 8APB | 15564 | 2024-03-16 | 2022-08-09 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126495 | 7873 | 61 | 0 | 36 | 0 | 62392 | logfile |
✘ | 8APD | 15566 | 2024-03-16 | 2022-08-09 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126495 | 7873 | 60 | 0 | 36 | 0 | 62392 | logfile |
✘ | 8APC | 15565 | 2024-03-16 | 2022-08-09 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126495 | 7873 | 59 | 0 | 36 | 0 | 62392 | logfile |
✘ | 8APA | 15563 | 2024-03-16 | 2022-08-09 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126495 | 7873 | 60 | 0 | 36 | 0 | 62392 | logfile |
✘ | 8APE | 15567 | 2024-03-16 | 2022-08-09 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126495 | 7873 | 60 | 0 | 36 | 0 | 62392 | logfile |
✘ | 8APF | 15568 | 2024-03-16 | 2022-08-09 | 4.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126490 | 7873 | 60 | 0 | 36 | 0 | 62387 | logfile |
✘ | 8APG | 15570 | 2024-03-16 | 2022-08-09 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126490 | 7873 | 61 | 0 | 36 | 0 | 62387 | logfile |
✘ | 8APH | 15571 | 2024-03-16 | 2022-08-09 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126490 | 7873 | 60 | 0 | 36 | 0 | 62387 | logfile |
✘ | 8APJ | 15572 | 2024-03-16 | 2022-08-09 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126490 | 7873 | 60 | 0 | 36 | 0 | 62387 | logfile |
✘ | 7UND | 26621 | 2024-03-16 | 2022-04-10 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 129454 | 8269 | 40 | 269 | 10 | 0 | 61541 | logfile |
✔ | 7YFZ | 33802 | 2024-03-15 | 2022-07-09 | 3.19 | 2.87 | 2.92 | 2.9 | 0.006 | 0.86 | 3.0 | 0.05 | 12.31 | 0.01 | 1.749 | 18.46 | 0.20 | 6.2 | 93.6 | 0.2 | -0.92 | 0.62 | 0.79 | 3.45 | 2.9 | 0.003 | 0.57 | 1.0 | 0.04 | 14.53 | 0.00 | 1.866 | 12.22 | 0.94 | 4.8 | 95.2 | 0.1 | 0.60 | 1.25 | 0.61 | 0.81 | 3.04 | 128850 | 8814 | 42 | 0 | 0 | 0 | 61470 | logfile |
✔ | 7U06 | 26255 | 2024-03-15 | 2022-02-17 | 4.2 | 3.74 | — | 3.7 | 0.005 | 0.86 | 0.0 | 0.05 | 14.08 | 0.01 | 1.997 | 5.33 | 0.01 | 11.1 | 88.8 | 0.1 | -2.22 | 0.50 | 0.68 | — | 3.7 | 0.003 | 0.59 | 0.0 | 0.04 | 14.12 | 0.00 | 1.900 | 11.24 | 0.04 | 11.1 | 88.7 | 0.2 | -1.86 | 0.50 | 0.52 | 0.70 | — | 124310 | 7391 | 31 | 0 | 764 | 0 | 60450 | logfile |
✔ | 7oHT | 12908 | 2024-03-17 | 2021-05-11 | 4.7 | 6.83 | 4.99 | 3.5 | 0.002 | 0.48 | 0.0 | 0.04 | 22.77 | 0.00 | 1.855 | 6.77 | 1.28 | 5.3 | 94.6 | 0.1 | 0.83 | 0.81 | 0.61 | — | 3.4 | 0.003 | 0.57 | 0.0 | 0.03 | 22.76 | 0.00 | 1.820 | 18.58 | 0.00 | 8.5 | 91.3 | 0.1 | -0.69 | 1.74 | 0.86 | 0.78 | — | 135365 | 5154 | 30 | 1618 | 3 | 0 | 59714 | logfile |
✔ | 6PJ6 | 20353 | 2024-03-02 | 2019-06-27 | 2.2 | 2.48 | — | 2.5 | 0.011 | 1.07 | 14.0 | 0.06 | 23.52 | 0.02 | 1.227 | 5.24 | 2.25 | 5.6 | 94.4 | 0.1 | -2.65 | 0.62 | 0.85 | 4.58 | 2.5 | 0.005 | 0.70 | 1.0 | 0.04 | 23.53 | 0.01 | 0.951 | 7.52 | 3.47 | 5.6 | 94.4 | 0.0 | -0.87 | 1.29 | 0.63 | 0.86 | 4.40 | 154542 | 3356 | 67 | 3016 | 187 | 3897 | 59624 | logfile |
✘ | 6RW4 | 10021 | 2024-03-15 | 2019-06-03 | 2.97 | 2.14 | 2.98 | 2.8 | 0.008 | 0.67 | 0.0 | 0.08 | 18.29 | 0.01 | 1.650 | 2.42 | 0.06 | 3.0 | 97.0 | 0.1 | -2.57 | 0.85 | 0.84 | 4.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 128080 | 5920 | 47 | 955 | 85 | 59 | 59211 | logfile |
✔ | 8B9C | 15924 | 2024-03-13 | 2022-10-05 | 4.6 | 5.42 | 4.24 | 4.9 | 0.006 | 0.80 | 0.0 | 0.05 | 13.70 | 0.01 | 1.941 | 0.64 | 0.51 | 2.1 | 97.9 | 0.0 | 0.52 | 0.78 | 0.63 | — | 4.9 | 0.004 | 0.60 | 0.0 | 0.04 | 13.25 | 0.00 | 1.694 | 11.16 | 0.00 | 4.3 | 95.7 | 0.0 | 0.49 | 2.53 | 0.83 | 0.78 | — | 117985 | 7179 | 26 | 56 | 12 | 0 | 59018 | logfile |