Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ECY	28025	2022-12-21	2022-09-02	2.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	46485	5540	45	0	36	2024	0	logfile
✔	8EAX	27989	2022-12-14	2022-08-29	3.73	2.60	3.72	2.0	0.004	0.83	0.0	0.05	14.96	0.00	2.213	11.91	0.30	9.8	89.8	0.4	-3.99	0.73	0.74	1.75	2.0	0.003	0.87	0.0	0.04	17.71	0.00	1.956	11.48	0.35	5.8	94.2	0.0	-0.35	1.34	0.73	0.72	1.16	18458	2332	8	0	0	0	0	logfile
✔	8EAU	27986	2022-12-14	2022-08-29	3.1	3.32	3.11	3.3	0.004	0.64	0.0	0.04	12.72	0.00	2.097	9.21	0.00	1.7	98.3	0.0	1.07	0.67	0.82	3.62	3.3	0.003	0.58	0.0	0.04	14.75	0.00	2.131	10.09	0.27	1.7	98.3	0.0	1.70	1.52	0.70	0.85	2.72	21909	2946	16	0	0	0	0	logfile
✔	8EAT	27985	2022-12-19	2022-08-29	3.1	3.35	3.09	3.3	0.004	0.54	0.0	0.04	12.78	0.00	2.047	6.00	0.00	2.7	97.3	0.0	0.06	0.66	0.80	3.27	3.3	0.005	0.54	0.0	0.04	14.19	0.00	2.160	7.56	0.17	2.2	97.8	0.0	2.03	0.38	0.66	0.82	3.05	34663	2349	15	0	0	0	17463	logfile
✔	8EAS	27984	2022-12-15	2022-08-29	2.6	2.77	2.60	2.8	0.006	0.64	0.0	0.04	12.91	0.00	2.044	9.09	0.00	1.4	98.6	0.0	1.65	0.67	0.83	4.09	2.8	0.003	0.52	0.0	0.04	15.45	0.00	2.189	9.04	1.20	1.2	98.8	0.0	2.29	0.29	0.66	0.84	3.41	24802	3241	18	0	39	0	0	logfile
✘	8EAR	27983	2022-12-19	2022-08-29	3.5	3.77	3.66	3.7	0.003	0.64	0.0	0.04	13.92	0.00	1.382	11.75	0.18	4.1	95.6	0.3	0.42	0.68	0.69	1.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	78512	9556	8	0	56	0	0	logfile
✔	8EAQ	27982	2022-12-15	2022-08-29	3.26	3.39	3.29	3.3	0.004	0.64	0.0	0.04	14.30	0.01	2.177	10.57	0.42	4.1	95.5	0.4	1.05	0.72	0.77	1.71	3.3	0.003	0.63	0.0	0.04	15.80	0.00	2.137	10.28	0.13	4.4	95.4	0.2	0.70	0.48	0.75	0.79	1.76	77928	9496	8	0	52	0	0	logfile
✔	8EA4	27972	2022-12-12	2022-08-27	3.0	4.51	3.88	3.9	0.013	1.63	12.0	0.08	16.78	0.02	1.131	14.01	0.21	2.3	97.7	0.0	-1.13	0.76	0.60	1.23	3.9	0.003	0.70	0.0	0.04	18.71	0.00	1.930	12.49	1.37	2.4	97.6	0.0	1.44	1.46	0.89	0.84	1.04	58049	5875	46	495	28	0	0	logfile
✔	8EA3	27971	2022-12-11	2022-08-27	3.7	3.91	3.69	3.8	0.013	1.65	12.0	0.09	16.88	0.02	1.162	11.59	0.29	2.4	97.4	0.2	-1.04	0.75	0.70	2.00	3.8	0.004	0.62	0.0	0.04	18.89	0.00	1.836	9.43	0.27	2.7	97.2	0.0	1.41	1.78	0.81	0.82	1.36	55955	5618	44	495	26	0	0	logfile
✔	8EA0	27970	2022-12-11	2022-08-27	2.56	2.05	2.66	1.9	0.003	0.55	0.0	0.04	12.24	0.00	2.237	8.88	0.00	4.3	95.7	0.0	-0.24	0.72	0.77	2.21	1.9	0.004	0.56	0.0	0.04	14.88	0.00	2.244	7.37	0.42	4.6	95.4	0.0	0.69	0.41	0.74	0.80	2.82	2286	285	1	0	2	0	0	logfile
✔	8E9Z	27969	2022-12-12	2022-08-27	2.69	2.09	2.64	1.9	0.004	0.80	2.0	0.05	15.12	0.01	2.248	9.78	0.34	3.2	96.8	0.0	-1.79	0.79	0.79	2.55	1.9	0.004	0.60	0.0	0.04	15.94	0.00	2.072	7.87	1.03	2.3	97.7	0.0	0.42	0.32	0.79	0.80	2.97	8566	1129	6	0	2	0	0	logfile
✔	8E9Y	27968	2022-12-12	2022-08-27	2.79	2.12	2.79	1.9	0.005	0.83	0.0	0.05	13.56	0.00	2.217	12.98	0.12	5.2	94.8	0.0	-1.06	0.76	0.75	3.19	1.9	0.003	0.61	0.0	0.04	15.88	0.00	2.206	10.75	2.20	4.4	95.5	0.1	-0.36	0.37	0.76	0.76	2.76	8479	1123	6	0	1	0	0	logfile
✔	8E9X	27967	2022-12-12	2022-08-27	2.7	2.10	2.72	1.9	0.004	0.61	0.0	0.04	12.41	0.00	2.200	6.58	0.00	4.2	95.8	0.0	-0.15	0.78	0.79	3.99	1.9	0.003	0.54	0.0	0.04	15.10	0.00	2.121	6.76	1.38	3.7	96.3	0.0	0.82	0.34	0.80	0.82	3.56	8380	1109	6	0	1	0	0	logfile
✔	8E9W	27966	2022-12-12	2022-08-27	2.69	2.11	2.70	1.9	0.004	0.68	0.0	0.04	12.70	0.00	2.210	7.67	0.11	2.9	97.1	0.0	0.23	0.78	0.78	3.54	1.9	0.003	0.57	0.0	0.04	15.46	0.00	2.152	8.09	1.37	3.2	96.8	0.0	0.59	0.35	0.80	0.82	3.00	8529	1123	6	0	1	0	0	logfile
✔	8E9i	27965	2022-12-19	2022-08-26	2.8	3.89	2.92	3.0	0.005	0.68	0.0	0.10	11.42	0.01	1.787	10.83	0.06	5.5	94.3	0.2	0.30	0.78	0.86	3.54	2.9	0.002	0.58	0.0	0.04	12.82	0.00	2.019	10.94	0.67	3.3	96.6	0.1	1.25	0.34	0.80	0.87	2.78	35471	5048	22	0	14	0	0	logfile
✔	8E9H	27964	2022-12-19	2022-08-26	2.7	3.77	2.71	2.9	0.005	0.62	0.0	0.10	11.74	0.01	1.727	9.45	0.03	3.9	96.0	0.2	1.08	0.82	0.87	3.82	2.9	0.003	0.58	0.0	0.04	13.38	0.00	2.019	11.98	0.69	3.2	96.7	0.1	1.43	0.28	0.82	0.90	2.96	36670	5058	22	0	14	0	0	logfile
✔	8E9G	27963	2022-12-19	2022-08-26	2.6	3.76	2.65	2.8	0.004	0.61	1.0	0.10	11.51	0.01	1.861	9.41	0.00	3.8	96.0	0.2	1.13	0.82	0.89	3.72	2.8	0.003	0.57	0.0	0.04	12.94	0.00	1.976	10.89	0.65	3.1	96.8	0.1	1.34	0.27	0.83	0.90	2.89	35941	5051	22	0	15	0	0	logfile
✔	8E7M	27939	2022-12-12	2022-08-24	3.3	3.56	3.36	3.6	0.003	0.74	0.0	0.05	13.41	0.01	2.154	7.57	0.00	4.5	95.5	0.0	-1.04	0.68	0.78	2.45	3.7	0.003	0.62	0.0	0.04	15.02	0.00	2.242	6.09	0.00	3.3	96.7	0.0	1.22	0.44	0.69	0.83	2.09	8293	1030	7	0	11	0	0	logfile
✘	8E70	27932	2022-12-18	2022-08-23	4.1	8.52	6.00	7.4	0.004	0.69	0.0	0.05	14.45	0.00	1.287	29.26	1.63	1.3	98.4	0.3	-0.83	0.64	0.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21097	2502	13	61	18	0	63	logfile
✔	8E6Z	27931	2022-12-20	2022-08-23	4.1	4.60	4.10	4.0	0.010	1.19	5.0	0.07	15.55	0.01	1.038	16.65	4.31	8.8	90.6	0.6	-4.36	0.74	0.58	—	4.0	0.003	0.60	0.0	0.04	14.25	0.00	1.923	39.10	0.00	7.2	92.8	0.1	-0.20	1.61	0.87	0.81	—	39505	3358	10	97	3	0	11239	logfile

• ← previous
• Page 4 of 443
• next →