Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oUY	17205	2023-07-07	2023-04-25	3.4	2.97	3.46	3.3	0.002	0.52	0.0	0.04	16.93	0.00	1.811	4.62	0.00	4.5	95.5	0.0	-0.78	0.71	0.78	2.26	3.3	0.004	0.55	0.0	0.04	17.00	0.00	1.793	5.64	0.12	6.2	93.8	0.0	-0.48	0.34	0.71	0.78	2.13	14695	925	7	0	6	0	7380	logfile
✔	8oTT	17184	2023-07-06	2023-04-21	3.3	3.86	3.31	3.4	0.005	0.77	0.0	0.05	24.44	0.01	2.513	1.15	0.16	1.3	98.7	0.0	1.04	0.89	0.82	2.67	3.5	0.005	0.67	2.0	0.04	27.31	0.00	2.173	8.02	0.00	2.7	97.3	0.0	3.61	0.78	0.91	0.89	2.35	12973	859	17	288	8	0	0	logfile
✔	8oTS	17183	2023-07-06	2023-04-21	3.3	4.05	3.44	3.6	0.009	1.03	0.0	0.06	25.68	0.01	2.508	0.66	0.63	0.3	99.7	0.0	1.70	0.89	0.85	2.32	3.7	0.005	0.56	0.0	0.03	25.90	0.00	2.174	7.52	0.00	1.2	98.8	0.0	4.62	1.37	0.89	0.88	1.45	13160	985	18	254	8	0	0	logfile
✔	8oSL	17160	2023-07-07	2023-04-19	4.9	8.34	6.27	6.8	0.005	0.80	0.0	0.05	28.45	0.00	2.363	2.30	0.00	1.1	98.9	0.0	-0.07	0.81	0.71	—	7.0	0.005	0.63	0.0	0.04	34.49	0.00	2.021	72.35	0.00	5.2	94.8	0.0	1.59	2.75	0.87	0.82	—	13541	1441	14	294	0	0	301	logfile
✔	8oSK	17157	2023-07-07	2023-04-19	3.6	4.91	—	3.0	0.009	1.12	0.0	0.06	24.46	0.01	2.263	0.52	0.00	0.3	99.7	0.0	1.80	0.86	0.79	0.46	3.0	0.005	0.76	0.0	0.04	26.90	0.00	2.169	12.41	0.31	2.2	97.8	0.0	1.61	1.23	0.87	0.83	0.62	13995	1343	12	248	0	0	0	logfile
✔	8oPQ	17085	2023-07-05	2023-04-07	3.28	2.33	3.33	2.2	0.003	0.52	0.0	0.04	9.91	0.01	2.245	8.25	0.00	3.8	96.2	0.0	1.64	0.77	0.77	3.11	2.2	0.003	0.65	0.0	0.04	14.96	0.00	2.147	8.54	0.55	3.7	96.3	0.0	2.09	0.54	0.77	0.79	2.88	10006	1296	4	0	2	0	0	logfile
✔	8oNT	17000	2023-07-03	2023-04-03	3.66	3.95	3.45	3.9	0.006	0.67	0.0	0.04	16.01	0.01	1.908	33.89	0.87	6.7	93.3	0.0	1.63	0.63	0.79	0.81	3.9	0.003	0.54	0.0	0.04	15.80	0.00	2.083	7.87	0.00	5.6	94.4	0.0	1.77	0.33	0.63	0.77	1.05	4316	558	3	0	1	1	0	logfile
✔	8oMQ	16974	2023-07-05	2023-03-31	3.11	2.37	3.05	3.0	0.007	1.23	0.0	0.08	16.49	0.00	1.847	16.52	2.99	7.3	92.7	0.0	-3.30	0.75	0.78	1.53	3.0	0.004	0.68	0.0	0.04	17.78	0.00	1.899	17.36	0.51	4.0	96.0	0.0	-0.67	0.53	0.73	0.73	1.35	10584	1322	4	0	4	0	0	logfile
✔	8oMo	16973	2023-07-05	2023-03-31	3.43	2.51	3.47	3.2	0.007	1.36	2.0	0.09	17.30	0.00	1.488	21.48	4.68	8.0	92.0	0.0	-3.82	0.75	0.80	1.33	2.1	0.005	0.80	0.0	0.05	18.65	0.00	1.786	20.36	0.88	6.1	93.9	0.0	-0.88	1.11	0.71	0.72	1.19	10290	1288	4	0	4	0	0	logfile
✔	8oMA	16972	2023-07-06	2023-03-31	3.29	2.61	3.29	3.2	0.008	1.30	1.0	0.09	19.39	0.01	1.878	28.14	2.97	7.9	92.1	0.0	-1.51	0.68	0.70	0.46	1.6	0.004	0.78	0.0	0.04	19.82	0.00	1.907	24.91	0.42	6.7	93.3	0.0	-0.58	1.94	0.63	0.60	0.62	11379	1337	6	34	3	0	0	logfile
✔	8oM9	16971	2023-07-06	2023-03-31	3.32	2.45	3.31	2.0	0.008	1.29	3.0	0.09	18.80	0.00	2.025	25.29	2.76	6.3	93.7	0.0	-1.44	0.71	0.73	0.58	1.6	0.004	0.72	0.0	0.04	19.00	0.00	1.822	19.87	0.65	5.7	94.3	0.1	-0.75	0.53	0.67	0.66	0.65	13314	1548	6	44	4	0	0	logfile
✔	8oM5	16969	2023-07-06	2023-03-31	3.52	2.68	3.58	2.9	0.007	1.08	1.0	0.08	17.61	0.00	1.974	21.73	1.93	7.9	92.0	0.1	-1.45	0.75	0.80	1.43	2.2	0.004	0.82	0.0	0.05	18.38	0.00	1.946	22.22	0.55	8.2	91.7	0.1	-1.05	1.04	0.70	0.71	1.07	13138	1640	4	0	4	0	0	logfile
✔	8oLX	16964	2023-07-07	2023-03-30	3.1	2.39	3.11	2.1	0.007	0.97	0.0	0.07	19.60	0.01	1.992	17.01	2.00	5.4	94.6	0.0	-0.32	0.77	0.78	2.47	2.1	0.004	0.65	0.0	0.04	19.84	0.00	2.114	14.26	0.53	4.2	95.8	0.0	0.08	0.35	0.74	0.76	2.56	14492	1699	5	45	2	0	0	logfile
✘	8oiT	16899	2023-07-06	2023-03-23	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	113095	9412	79	1704	265	0	0	logfile
✘	8oiS	16898	2023-07-11	2023-03-23	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72671	6150	48	1034	173	3	0	logfile
✔	8oiQ	16896	2023-07-06	2023-03-23	3.5	3.76	3.59	3.7	0.003	0.41	0.0	0.03	11.81	0.01	1.362	5.13	0.63	2.7	97.3	0.0	0.46	0.64	0.82	2.68	3.7	0.003	0.58	0.0	0.04	15.29	0.00	1.795	8.16	0.32	3.6	96.4	0.0	0.33	0.65	0.64	0.83	2.23	112981	9379	77	1718	238	0	0	logfile
✘	8oiP	16895	2023-07-11	2023-03-23	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72369	6162	47	1041	144	3	0	logfile
✔	8oHS	16884	2023-07-06	2023-03-21	4.1	4.12	3.94	4.0	0.009	1.09	0.0	0.08	14.89	0.00	0.697	2.69	0.41	4.5	95.5	0.0	-1.04	0.47	0.78	—	4.0	0.003	0.67	0.0	0.04	13.86	0.00	2.228	6.93	0.07	1.7	98.3	0.0	1.31	3.02	0.50	0.85	—	13335	1758	9	0	0	0	0	logfile
✔	8JJ5	36340	2023-07-07	2023-05-29	3.5	3.74	3.51	3.7	0.021	2.18	39.0	0.19	15.54	0.02	2.397	1.75	1.22	8.9	91.0	0.1	-2.93	0.38	0.61	1.08	3.7	0.003	0.71	0.0	0.04	16.25	0.00	2.080	16.29	0.41	6.1	93.9	0.0	-0.01	1.07	0.40	0.64	0.81	13594	866	10	0	14	0	6679	logfile
✔	8JD6	36177	2023-07-08	2023-05-12	3.4	3.44	—	3.4	0.003	0.56	0.0	0.04	15.12	0.00	2.218	12.40	0.35	5.9	94.0	0.0	-0.74	0.62	0.65	0.86	3.4	0.003	0.60	0.0	0.04	15.83	0.00	2.089	14.58	0.40	7.0	93.0	0.0	-1.01	1.57	0.66	0.72	1.39	17192	2312	8	0	1	0	0	logfile

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