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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8oUY | 17205 | 2023-07-07 | 2023-04-25 | 3.4 | 2.97 | 3.46 | 3.3 | 0.002 | 0.52 | 0.0 | 0.04 | 16.93 | 0.00 | 1.811 | 4.62 | 0.00 | 4.5 | 95.5 | 0.0 | -0.78 | 0.71 | 0.78 | 2.26 | 3.3 | 0.004 | 0.55 | 0.0 | 0.04 | 17.00 | 0.00 | 1.793 | 5.64 | 0.12 | 6.2 | 93.8 | 0.0 | -0.48 | 0.34 | 0.71 | 0.78 | 2.13 | 14695 | 925 | 7 | 0 | 6 | 0 | 7380 | logfile |
✔ | 8oTT | 17184 | 2023-07-06 | 2023-04-21 | 3.3 | 3.86 | 3.31 | 3.4 | 0.005 | 0.77 | 0.0 | 0.05 | 24.44 | 0.01 | 2.513 | 1.15 | 0.16 | 1.3 | 98.7 | 0.0 | 1.04 | 0.89 | 0.82 | 2.67 | 3.5 | 0.005 | 0.67 | 2.0 | 0.04 | 27.31 | 0.00 | 2.173 | 8.02 | 0.00 | 2.7 | 97.3 | 0.0 | 3.61 | 0.78 | 0.91 | 0.89 | 2.35 | 12973 | 859 | 17 | 288 | 8 | 0 | 0 | logfile |
✔ | 8oTS | 17183 | 2023-07-06 | 2023-04-21 | 3.3 | 4.05 | 3.44 | 3.6 | 0.009 | 1.03 | 0.0 | 0.06 | 25.68 | 0.01 | 2.508 | 0.66 | 0.63 | 0.3 | 99.7 | 0.0 | 1.70 | 0.89 | 0.85 | 2.32 | 3.7 | 0.005 | 0.56 | 0.0 | 0.03 | 25.90 | 0.00 | 2.174 | 7.52 | 0.00 | 1.2 | 98.8 | 0.0 | 4.62 | 1.37 | 0.89 | 0.88 | 1.45 | 13160 | 985 | 18 | 254 | 8 | 0 | 0 | logfile |
✔ | 8oSL | 17160 | 2023-07-07 | 2023-04-19 | 4.9 | 8.34 | 6.27 | 6.8 | 0.005 | 0.80 | 0.0 | 0.05 | 28.45 | 0.00 | 2.363 | 2.30 | 0.00 | 1.1 | 98.9 | 0.0 | -0.07 | 0.81 | 0.71 | — | 7.0 | 0.005 | 0.63 | 0.0 | 0.04 | 34.49 | 0.00 | 2.021 | 72.35 | 0.00 | 5.2 | 94.8 | 0.0 | 1.59 | 2.75 | 0.87 | 0.82 | — | 13541 | 1441 | 14 | 294 | 0 | 0 | 301 | logfile |
✔ | 8oSK | 17157 | 2023-07-07 | 2023-04-19 | 3.6 | 4.91 | — | 3.0 | 0.009 | 1.12 | 0.0 | 0.06 | 24.46 | 0.01 | 2.263 | 0.52 | 0.00 | 0.3 | 99.7 | 0.0 | 1.80 | 0.86 | 0.79 | 0.46 | 3.0 | 0.005 | 0.76 | 0.0 | 0.04 | 26.90 | 0.00 | 2.169 | 12.41 | 0.31 | 2.2 | 97.8 | 0.0 | 1.61 | 1.23 | 0.87 | 0.83 | 0.62 | 13995 | 1343 | 12 | 248 | 0 | 0 | 0 | logfile |
✔ | 8oPQ | 17085 | 2023-07-05 | 2023-04-07 | 3.28 | 2.33 | 3.33 | 2.2 | 0.003 | 0.52 | 0.0 | 0.04 | 9.91 | 0.01 | 2.245 | 8.25 | 0.00 | 3.8 | 96.2 | 0.0 | 1.64 | 0.77 | 0.77 | 3.11 | 2.2 | 0.003 | 0.65 | 0.0 | 0.04 | 14.96 | 0.00 | 2.147 | 8.54 | 0.55 | 3.7 | 96.3 | 0.0 | 2.09 | 0.54 | 0.77 | 0.79 | 2.88 | 10006 | 1296 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8oNT | 17000 | 2023-07-03 | 2023-04-03 | 3.66 | 3.95 | 3.45 | 3.9 | 0.006 | 0.67 | 0.0 | 0.04 | 16.01 | 0.01 | 1.908 | 33.89 | 0.87 | 6.7 | 93.3 | 0.0 | 1.63 | 0.63 | 0.79 | 0.81 | 3.9 | 0.003 | 0.54 | 0.0 | 0.04 | 15.80 | 0.00 | 2.083 | 7.87 | 0.00 | 5.6 | 94.4 | 0.0 | 1.77 | 0.33 | 0.63 | 0.77 | 1.05 | 4316 | 558 | 3 | 0 | 1 | 1 | 0 | logfile |
✔ | 8oMQ | 16974 | 2023-07-05 | 2023-03-31 | 3.11 | 2.37 | 3.05 | 3.0 | 0.007 | 1.23 | 0.0 | 0.08 | 16.49 | 0.00 | 1.847 | 16.52 | 2.99 | 7.3 | 92.7 | 0.0 | -3.30 | 0.75 | 0.78 | 1.53 | 3.0 | 0.004 | 0.68 | 0.0 | 0.04 | 17.78 | 0.00 | 1.899 | 17.36 | 0.51 | 4.0 | 96.0 | 0.0 | -0.67 | 0.53 | 0.73 | 0.73 | 1.35 | 10584 | 1322 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8oMo | 16973 | 2023-07-05 | 2023-03-31 | 3.43 | 2.51 | 3.47 | 3.2 | 0.007 | 1.36 | 2.0 | 0.09 | 17.30 | 0.00 | 1.488 | 21.48 | 4.68 | 8.0 | 92.0 | 0.0 | -3.82 | 0.75 | 0.80 | 1.33 | 2.1 | 0.005 | 0.80 | 0.0 | 0.05 | 18.65 | 0.00 | 1.786 | 20.36 | 0.88 | 6.1 | 93.9 | 0.0 | -0.88 | 1.11 | 0.71 | 0.72 | 1.19 | 10290 | 1288 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8oMA | 16972 | 2023-07-06 | 2023-03-31 | 3.29 | 2.61 | 3.29 | 3.2 | 0.008 | 1.30 | 1.0 | 0.09 | 19.39 | 0.01 | 1.878 | 28.14 | 2.97 | 7.9 | 92.1 | 0.0 | -1.51 | 0.68 | 0.70 | 0.46 | 1.6 | 0.004 | 0.78 | 0.0 | 0.04 | 19.82 | 0.00 | 1.907 | 24.91 | 0.42 | 6.7 | 93.3 | 0.0 | -0.58 | 1.94 | 0.63 | 0.60 | 0.62 | 11379 | 1337 | 6 | 34 | 3 | 0 | 0 | logfile |
✔ | 8oM9 | 16971 | 2023-07-06 | 2023-03-31 | 3.32 | 2.45 | 3.31 | 2.0 | 0.008 | 1.29 | 3.0 | 0.09 | 18.80 | 0.00 | 2.025 | 25.29 | 2.76 | 6.3 | 93.7 | 0.0 | -1.44 | 0.71 | 0.73 | 0.58 | 1.6 | 0.004 | 0.72 | 0.0 | 0.04 | 19.00 | 0.00 | 1.822 | 19.87 | 0.65 | 5.7 | 94.3 | 0.1 | -0.75 | 0.53 | 0.67 | 0.66 | 0.65 | 13314 | 1548 | 6 | 44 | 4 | 0 | 0 | logfile |
✔ | 8oM5 | 16969 | 2023-07-06 | 2023-03-31 | 3.52 | 2.68 | 3.58 | 2.9 | 0.007 | 1.08 | 1.0 | 0.08 | 17.61 | 0.00 | 1.974 | 21.73 | 1.93 | 7.9 | 92.0 | 0.1 | -1.45 | 0.75 | 0.80 | 1.43 | 2.2 | 0.004 | 0.82 | 0.0 | 0.05 | 18.38 | 0.00 | 1.946 | 22.22 | 0.55 | 8.2 | 91.7 | 0.1 | -1.05 | 1.04 | 0.70 | 0.71 | 1.07 | 13138 | 1640 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8oLX | 16964 | 2023-07-07 | 2023-03-30 | 3.1 | 2.39 | 3.11 | 2.1 | 0.007 | 0.97 | 0.0 | 0.07 | 19.60 | 0.01 | 1.992 | 17.01 | 2.00 | 5.4 | 94.6 | 0.0 | -0.32 | 0.77 | 0.78 | 2.47 | 2.1 | 0.004 | 0.65 | 0.0 | 0.04 | 19.84 | 0.00 | 2.114 | 14.26 | 0.53 | 4.2 | 95.8 | 0.0 | 0.08 | 0.35 | 0.74 | 0.76 | 2.56 | 14492 | 1699 | 5 | 45 | 2 | 0 | 0 | logfile |
✘ | 8oiT | 16899 | 2023-07-06 | 2023-03-23 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 113095 | 9412 | 79 | 1704 | 265 | 0 | 0 | logfile |
✘ | 8oiS | 16898 | 2023-07-11 | 2023-03-23 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72671 | 6150 | 48 | 1034 | 173 | 3 | 0 | logfile |
✔ | 8oiQ | 16896 | 2023-07-06 | 2023-03-23 | 3.5 | 3.76 | 3.59 | 3.7 | 0.003 | 0.41 | 0.0 | 0.03 | 11.81 | 0.01 | 1.362 | 5.13 | 0.63 | 2.7 | 97.3 | 0.0 | 0.46 | 0.64 | 0.82 | 2.68 | 3.7 | 0.003 | 0.58 | 0.0 | 0.04 | 15.29 | 0.00 | 1.795 | 8.16 | 0.32 | 3.6 | 96.4 | 0.0 | 0.33 | 0.65 | 0.64 | 0.83 | 2.23 | 112981 | 9379 | 77 | 1718 | 238 | 0 | 0 | logfile |
✘ | 8oiP | 16895 | 2023-07-11 | 2023-03-23 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72369 | 6162 | 47 | 1041 | 144 | 3 | 0 | logfile |
✔ | 8oHS | 16884 | 2023-07-06 | 2023-03-21 | 4.1 | 4.12 | 3.94 | 4.0 | 0.009 | 1.09 | 0.0 | 0.08 | 14.89 | 0.00 | 0.697 | 2.69 | 0.41 | 4.5 | 95.5 | 0.0 | -1.04 | 0.47 | 0.78 | — | 4.0 | 0.003 | 0.67 | 0.0 | 0.04 | 13.86 | 0.00 | 2.228 | 6.93 | 0.07 | 1.7 | 98.3 | 0.0 | 1.31 | 3.02 | 0.50 | 0.85 | — | 13335 | 1758 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 8JJ5 | 36340 | 2023-07-07 | 2023-05-29 | 3.5 | 3.74 | 3.51 | 3.7 | 0.021 | 2.18 | 39.0 | 0.19 | 15.54 | 0.02 | 2.397 | 1.75 | 1.22 | 8.9 | 91.0 | 0.1 | -2.93 | 0.38 | 0.61 | 1.08 | 3.7 | 0.003 | 0.71 | 0.0 | 0.04 | 16.25 | 0.00 | 2.080 | 16.29 | 0.41 | 6.1 | 93.9 | 0.0 | -0.01 | 1.07 | 0.40 | 0.64 | 0.81 | 13594 | 866 | 10 | 0 | 14 | 0 | 6679 | logfile |
✔ | 8JD6 | 36177 | 2023-07-08 | 2023-05-12 | 3.4 | 3.44 | — | 3.4 | 0.003 | 0.56 | 0.0 | 0.04 | 15.12 | 0.00 | 2.218 | 12.40 | 0.35 | 5.9 | 94.0 | 0.0 | -0.74 | 0.62 | 0.65 | 0.86 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 15.83 | 0.00 | 2.089 | 14.58 | 0.40 | 7.0 | 93.0 | 0.0 | -1.01 | 1.57 | 0.66 | 0.72 | 1.39 | 17192 | 2312 | 8 | 0 | 1 | 0 | 0 | logfile |